RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780510|ref|YP_003064923.1| hypothetical protein CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62] (137 letters) >1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (B:294-629) Length = 336 Score = 25.6 bits (56), Expect = 2.7 Identities = 7/17 (41%), Positives = 9/17 (52%) Query: 110 RQYDDENNNDNIEQRIL 126 R YD N N+ R+L Sbjct: 106 RDYDPAQNKGNVLDRVL 122 >1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (A:318-661) Length = 344 Score = 24.8 bits (54), Expect = 4.8 Identities = 7/17 (41%), Positives = 10/17 (58%) Query: 110 RQYDDENNNDNIEQRIL 126 R YD N +N+ R+L Sbjct: 101 RDYDPAMNQNNVLDRVL 117 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.315 0.128 0.335 Gapped Lambda K H 0.267 0.0650 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 869,875 Number of extensions: 32799 Number of successful extensions: 85 Number of sequences better than 10.0: 1 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 13 Length of query: 137 Length of database: 4,956,049 Length adjustment: 80 Effective length of query: 57 Effective length of database: 2,251,649 Effective search space: 128343993 Effective search space used: 128343993 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.2 bits)