RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780510|ref|YP_003064923.1| hypothetical protein
CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)



>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane
           protein, multiprotein-pigment complex, photosynthesis;
           HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus
           elongatus} (B:294-629)
          Length = 336

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 110 RQYDDENNNDNIEQRIL 126
           R YD   N  N+  R+L
Sbjct: 106 RDYDPAQNKGNVLDRVL 122


>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane
           protein, multiprotein-pigment complex, photosynthesis;
           HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus
           elongatus} (A:318-661)
          Length = 344

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 110 RQYDDENNNDNIEQRIL 126
           R YD   N +N+  R+L
Sbjct: 101 RDYDPAMNQNNVLDRVL 117


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.128    0.335 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 869,875
Number of extensions: 32799
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 13
Length of query: 137
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 57
Effective length of database: 2,251,649
Effective search space: 128343993
Effective search space used: 128343993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)