RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780510|ref|YP_003064923.1| hypothetical protein
CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)



>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 307

 Score = 25.8 bits (56), Expect = 1.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 24  ESNLAYTISERKKINILREKLKDSINSTALMN 55
           + N+  ++SE+ K N  + K K + N+TA++ 
Sbjct: 274 DKNIHQSVSEQIKKNFAKSKWKQAFNATAVVR 305


>d2ohwa1 d.79.8.1 (A:3-130) Uncharacterized protein YueI {Bacillus
          subtilis [TaxId: 1423]}
          Length = 128

 Score = 23.5 bits (51), Expect = 6.7
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 27 LAYTISERKKINILRE---KLKDSINSTALMNPALASHYLKFYHSLSQ 71
          LA T  +  +    +E   +LK+S N T L+N  L       Y  ++ 
Sbjct: 36 LALTKGQVLRSKPYKEAEHELKNSHNVTLLINGELQYQSYSSYIQMAS 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.335 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 440,825
Number of extensions: 17774
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 6
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)