BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780510|ref|YP_003064923.1| hypothetical protein
CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780510|ref|YP_003064923.1| hypothetical protein CLIBASIA_01985 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 137

 Score =  275 bits (703), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MRSRKSRALYKIITAQCCIKSIAESNLAYTISERKKINILREKLKDSINSTALMNPALAS 60
           MRSRKSRALYKIITAQCCIKSIAESNLAYTISERKKINILREKLKDSINSTALMNPALAS
Sbjct: 1   MRSRKSRALYKIITAQCCIKSIAESNLAYTISERKKINILREKLKDSINSTALMNPALAS 60

Query: 61  HYLKFYHSLSQNDQKMASLQLVQENTLLSEKIKIDRLTEMKDETYLLEERQYDDENNNDN 120
           HYLKFYHSLSQNDQKMASLQLVQENTLLSEKIKIDRLTEMKDETYLLEERQYDDENNNDN
Sbjct: 61  HYLKFYHSLSQNDQKMASLQLVQENTLLSEKIKIDRLTEMKDETYLLEERQYDDENNNDN 120

Query: 121 IEQRILFNAVSRKFMSL 137
           IEQRILFNAVSRKFMSL
Sbjct: 121 IEQRILFNAVSRKFMSL 137


>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 864

 Score = 23.9 bits (50), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 18/23 (78%)

Query: 33  ERKKINILREKLKDSINSTALMN 55
           ERK+INIL++K+ + +++  L N
Sbjct: 606 ERKEINILKDKVSNKMHALVLDN 628


>gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 250

 Score = 23.5 bits (49), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 24  ESNLAYTISERKKINILREKLKDSINSTALMN 55
           E+ + + +SE     +LR+ LK  I +T L N
Sbjct: 130 ENMIPWEVSETHAPRVLRQLLKTQIPNTTLCN 161


>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 509

 Score = 22.7 bits (47), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 66  YHSLSQNDQKMASLQLVQENTLLSEKIKI 94
           ++ +   DQKM  L L+ EN    ++IKI
Sbjct: 481 WNDVEAYDQKMRELLLMFENNAEKKQIKI 509


>gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 341

 Score = 22.3 bits (46), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 8/47 (17%)

Query: 3  SRKSRALYKIITAQCCIKSIAESNLAYTISERKKINILREKLKDSIN 49
          +RK  +L K  T QC ++SI        I+E++ ++ L   L+  ++
Sbjct: 12 TRKGHSLMKNSTVQCALRSI--------IAEKRGLSSLESSLQGELS 50


>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score = 21.9 bits (45), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 36 KINILREKLKDSINSTALMNPALAS 60
          K+NI+++ LKD   +TA+    LAS
Sbjct: 2  KMNIVKDFLKDESGATAIEYGLLAS 26


>gi|254780763|ref|YP_003065176.1| hypothetical protein CLIBASIA_03260 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 107

 Score = 21.2 bits (43), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 17/85 (20%)

Query: 25  SNLAYTISERKKINILREKLKDSINSTALMNPALASHYLKFYHSLSQNDQKMASLQLVQE 84
           SN+   + + K+I    EK+K+SI S                 +       M S+++  +
Sbjct: 2   SNIMKMVGQFKEIQGKMEKMKESITS---------------LEAEGNAGGGMVSVRINGK 46

Query: 85  NTLLSEKIKIDRLTEMKDETYLLEE 109
           N L    +KIDR    +D   +LE+
Sbjct: 47  NMLTG--VKIDRSLLFEDNVEILED 69


>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 294

 Score = 20.8 bits (42), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 12  IITAQCCIKSIAESNLAYTISERKKINILREKLKDSINSTALMNPA---LASHYLKFYHS 68
            +T++ C+  +AE +  +       IN       DS  S ++M  A   + SH +KF  S
Sbjct: 187 FVTSEGCLVYLAE-DFGFKSLYLWPIN------SDSERSPSMMRHAINQMRSHKIKFIFS 239

Query: 69  LSQNDQKMASLQLVQENTLLSEKIKIDRLT--EMKDETYL 106
            S N  + A     + N      + +D L+  +    TYL
Sbjct: 240 ESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYL 279


>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 463

 Score = 20.8 bits (42), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 9   LYKIITAQCCIKSI---AESNLAYTISERKKINILREKLKDSINSTALMNPALAS 60
           +YK + A   ++SI   ++S  ++TI+  + I   +E ++ S+N + ++  AL S
Sbjct: 360 VYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTS 414


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.128    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,208
Number of Sequences: 1233
Number of extensions: 2726
Number of successful extensions: 19
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 16
length of query: 137
length of database: 328,796
effective HSP length: 65
effective length of query: 72
effective length of database: 248,651
effective search space: 17902872
effective search space used: 17902872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)