HHsearch alignment for GI: 254780511 and conserved domain: pfam01313
>pfam01313 Bac_export_3 Bacterial export proteins, family 3. This family includes the following members; FliQ, MopD, HrcS, Hrp, YopS and SpaQ All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.
Probab=95.84 E-value=0.11 Score=27.88 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999985332548999999999999999999999999999999995
Q gi|254780511|r 170 SFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 (248)
Q Consensus 170 ~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f~~ 245 (248)
T Consensus 2 ~~i~l~~~al~~~l~~s~P~l~~alvVGlvIsi~-QA~TqIqEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~ 76 (76)
T pfam01313 2 DVIDLGRQALWLVLLLSAPLLLVALVVGLVVSLF-QAATQIQEQTLSFVPKLLAVLLTLLLAGPWMLQTLLDFTRE 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4899999999999999988999999999999999-99999989689869999999999999878999999987529