Query gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 248
No_of_seqs 114 out of 860
Neff 6.8
Searched_HMMs 33803
Date Wed Jun 1 16:52:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780511.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2c4w_A 3-dehydroquinate dehyd 8.2 56 0.0017 11.4 -1.1 47 73-119 126-172 (176)
2 >1qlo_A Herpes simplex virus p 5.9 1.3E+02 0.0037 9.3 -0.3 13 92-104 3-15 (34)
3 >1q3q_A Thermosome alpha subun 4.1 2.2E+02 0.0066 7.8 1.1 59 92-158 11-74 (77)
4 >2iw3_A Elongation factor 3A; 3.9 2.4E+02 0.007 7.7 1.9 12 92-103 35-46 (93)
5 >2gv9_A DNA polymerase; polyme 3.8 2.4E+02 0.0071 7.6 0.5 15 104-118 24-38 (71)
6 >2zy9_A Mg2+ transporter MGTE; 3.7 2.5E+02 0.0073 7.5 4.9 33 62-94 74-106 (179)
7 >2zfd_B Putative uncharacteriz 3.7 2.5E+02 0.0075 7.5 0.4 22 99-120 10-31 (123)
8 >2jwa_A Receptor tyrosine-prot 3.7 2.6E+02 0.0076 7.5 3.2 26 115-140 3-28 (44)
9 >1pp9_C Cytochrome B; cytochro 3.5 2.7E+02 0.0079 7.4 1.7 24 32-55 23-46 (120)
10 >3bz1_T PSII-T, PSII-TC, photo 3.5 2.7E+02 0.0079 7.3 3.5 23 10-32 4-26 (32)
No 1
>>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* (A:)
Probab=8.23 E-value=56 Score=11.38 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999999999999998754222026888875
Q gi|254780511|r 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 (248)
Q Consensus 73 ~l~E~~iGl~lG~~~~i~f~a~~~AG~~id~q~Gls~a~~~dP~~~~ 119 (248)
.+.+.+.|..-||-..=...|++..-+.++.+.++..++--+|....
T Consensus 126 ~is~~~~G~I~G~G~~gY~lAl~al~~~l~~~~~~~~~~~~~~~~~~ 172 (176)
T 2c4w_A 126 YTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPNNPI 172 (176)
T ss_dssp HHHHHSSEEEESSTTHHHHHHHHHHHHHHHHHHHHHTTTTCCC----
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 34740418993698477999999999999976888987359988854
No 2
>>1qlo_A Herpes simplex virus protein ICP47; membrane proteins; NMR {Herpes simplex virus} (A:)
Probab=5.86 E-value=1.3e+02 Score=9.30 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254780511|r 92 LGLQFTGSVISTA 104 (248)
Q Consensus 92 ~a~~~AG~~id~q 104 (248)
|++++|..++|+.
T Consensus 3 walemadtfldnm 15 (34)
T 1qlo_A 3 WALEMADTFLDNM 15 (34)
T ss_dssp TSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHC
T ss_conf 4999899998741
No 3
>>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} (A:120-148,A:405-444,A:492-499)
Probab=4.06 E-value=2.2e+02 Score=7.79 Aligned_cols=59 Identities=8% Similarity=-0.002 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999998754222026888-----875301699999999999999945189999999999975556
Q gi|254780511|r 92 LGLQFTGSVISTAIGLNLQTSMGIS-----DSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158 (248)
Q Consensus 92 ~a~~~AG~~id~q~Gls~a~~~dP~-----~~~~~~~~~~l~~~~~~~lF~~~ggh~~li~~l~~Sf~~iP~ 158 (248)
.+.+-|-+++|- .+--.||. .|.-+.-+++.+...+-- ..|--.+.++.+.++++.+|-
T Consensus 11 ~~~~~~~~~~~~-----~~~~~~~~~iVpGGGA~Ei~LS~~L~~~Ak~---i~GkeQlaIeAFAeALevIP~ 74 (77)
T 1q3q_A 11 LAAEKAQEILDE-----IAIRVDPGAVLPAGGAPEIELAIRLDEYAKQ---VGGKEALAIENFADALKGIIE 74 (77)
T ss_dssp HHHHHHHHHHHH-----HCEECCTCEEEECTTHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999985-----1664568885667679999999998876524---887899999999999976824
No 4
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:335-427)
Probab=3.89 E-value=2.4e+02 Score=7.66 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780511|r 92 LGLQFTGSVIST 103 (248)
Q Consensus 92 ~a~~~AG~~id~ 103 (248)
+..-+|||++|-
T Consensus 35 YIaAIAgqLVDE 46 (93)
T 2iw3_A 35 YIAAIGADLIDE 46 (93)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999876
No 5
>>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B* (A:628-668,A:888-917)
Probab=3.84 E-value=2.4e+02 Score=7.62 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 875422202688887
Q gi|254780511|r 104 AIGLNLQTSMGISDS 118 (248)
Q Consensus 104 q~Gls~a~~~dP~~~ 118 (248)
..|+.=|.+.||.+|
T Consensus 24 ~VGYQGAKVLDP~sG 38 (71)
T 2gv9_A 24 HVGYQGAKVLDPTSG 38 (71)
T ss_dssp --------CCCCCCE
T ss_pred CCCCCCCEECCCCCC
T ss_conf 002368586167778
No 6
>>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:295-473)
Probab=3.74 E-value=2.5e+02 Score=7.54 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 012206899999999999999999999999999
Q gi|254780511|r 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94 (248)
Q Consensus 62 ~~~~~~~~~~l~l~E~~iGl~lG~~~~i~f~a~ 94 (248)
...+..+..-.+.||..+|..+|......-...
T Consensus 74 g~i~~~~~~~~~~~e~~~~~~lg~i~~~i~~~~ 106 (179)
T 2zy9_A 74 RDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGK 106 (179)
T ss_dssp TSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 105657899999999999999999999999999
No 7
>>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP- binding, kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} (B:)
Probab=3.66 E-value=2.5e+02 Score=7.47 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999987542220268888753
Q gi|254780511|r 99 SVISTAIGLNLQTSMGISDSLA 120 (248)
Q Consensus 99 ~~id~q~Gls~a~~~dP~~~~~ 120 (248)
++|+...|+.....|+......
T Consensus 10 diIs~SsG~DLSgLFe~~~~~~ 31 (123)
T 2zfd_B 10 DIISGSPGFNLSGLFGDARKYD 31 (123)
T ss_dssp HHHHTSTTSSSGGGGGGGCSSC
T ss_pred HHHHHCCCCCHHHHCCCCCCCC
T ss_conf 9998786888368438766664
No 8
>>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} (A:)
Probab=3.66 E-value=2.6e+02 Score=7.46 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 88875301699999999999999945
Q gi|254780511|r 115 ISDSLAETPLNSLIGIIGLLALWVID 140 (248)
Q Consensus 115 P~~~~~~~~~~~l~~~~~~~lF~~~g 140 (248)
|..+..+++.+..-...+.++++..|
T Consensus 3 paeqraspvtsiia~vvgill~~v~g 28 (44)
T 2jwa_A 3 PAEQRASPLTSIISAVVGILLVVVLG 28 (44)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 65642580899999999999999999
No 9
>>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} (C:260-379)
Probab=3.54 E-value=2.7e+02 Score=7.36 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 886288999999999999995214
Q gi|254780511|r 32 SYIPMQVRLCFAMAFSIVLLPFLW 55 (248)
Q Consensus 32 ~~iP~~vr~~l~l~ls~~~~p~v~ 55 (248)
|++|+..-..+|+..|+.+.-.++
T Consensus 23 RSIPNKLGGVlAL~~SiliL~~~P 46 (120)
T 1pp9_C 23 RSIPNKLGGVLALAFSILILALIP 46 (120)
T ss_dssp HTCSSHHHHHHHHHHHHHGGGGGG
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 725732156899999999999987
No 10
>>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3a0b_T* 3a0h_T* (T:)
Probab=3.52 E-value=2.7e+02 Score=7.34 Aligned_cols=23 Identities=4% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999998552788
Q gi|254780511|r 10 MSLFLIVCRVGSCIMLLPGLSMS 32 (248)
Q Consensus 10 ~~f~li~~Ri~~~~~~~P~f~~~ 32 (248)
+++.++++-+.|.++++-+|-.+
T Consensus 4 iayv~i~acii~lfffaiffre~ 26 (32)
T 3bz1_T 4 ITYVFIFACIIALFFFAIFFREP 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCC
T ss_pred EHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 13589999999999999984379
Done!