BLAST/PSIBLAST alignment of GI: 254780511 and GI: 209547954 at iteration 1
>gi|209547954|ref|YP_002279871.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 250
>gi|209533710|gb|ACI53645.1| type III secretion system inner membrane R protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 250
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 161/247 (65%), Gaps = 8/247 (3%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A+A SI ++P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L++ E +G ++G+L R+YTLG+QF ++I+T +G T G +D +
Sbjct: 61 AVHTGSGTYIGLIVSESLIGVMYGMLARIYTLGMQFAATIIATMVGY---TQPGSADIIE 117
Query: 121 ETPLNSLIGII---GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177
+TP +SL G I G++ L+++DFHH VF AL+ SY T+P G + SF + L+
Sbjct: 118 DTPESSLSGFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFSDTLEQ 177
Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIV 236
T IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL SI +V
Sbjct: 178 TTYIMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLVYFSIAALV 236
Query: 237 YQFSHSF 243
QF SF
Sbjct: 237 SQFGQSF 243