BLAST/PSIBLAST alignment of GI: 254780511 and GI: 241203132 at iteration 1
>gi|241203132|ref|YP_002974228.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 250
>gi|240857022|gb|ACS54689.1| type III secretion system inner membrane R protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 250
 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 110/247 (44%), Positives = 157/247 (63%), Gaps = 8/247 (3%)

Query: 1   MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
           M   P+  +++LFL+ CR+G C++ LPG S + +P Q+R+  A A SI ++P LWDT+  
Sbjct: 1   MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPDQLRVFIAGALSIAVMPLLWDTVYP 60

Query: 61  QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
                   Y  L+  E  +G ++G+L R+YTLG+QF  ++I+  +G    T  G +D L 
Sbjct: 61  AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGY---TQPGSADILE 117

Query: 121 ETPLNSLIGII---GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177
           +TP  SL G I   G++ L+++DFHH VF AL+ SY T+P G  +       SF + L+ 
Sbjct: 118 DTPETSLSGFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQ 177

Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIV 236
           T  IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL   SI  +V
Sbjct: 178 TTYIMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLIYFSIAAMV 236

Query: 237 YQFSHSF 243
            QF  SF
Sbjct: 237 SQFGQSF 243