BLAST/PSIBLAST alignment of GI: 254780511 and GI: 241203132 at iteration 1
>gi|241203132|ref|YP_002974228.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 250
>gi|240857022|gb|ACS54689.1| type III secretion system inner membrane R protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 250
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 157/247 (63%), Gaps = 8/247 (3%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPDQLRVFIAGALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ E +G ++G+L R+YTLG+QF ++I+ +G T G +D L
Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGY---TQPGSADILE 117
Query: 121 ETPLNSLIGII---GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177
+TP SL G I G++ L+++DFHH VF AL+ SY T+P G + SF + L+
Sbjct: 118 DTPETSLSGFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQ 177
Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIV 236
T IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL SI +V
Sbjct: 178 TTYIMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLIYFSIAAMV 236
Query: 237 YQFSHSF 243
QF SF
Sbjct: 237 SQFGQSF 243