BLAST/PSIBLAST alignment of GI: 254780511 and GI: 86356338 at iteration 1
>gi|86356338|ref|YP_468230.1| flagellar biosynthesis protein FliR [Rhizobium etli CFN 42] Length = 250
>gi|86280440|gb|ABC89503.1| flagellar byosinthesis transmembrane protein [Rhizobium etli CFN 42] Length = 250
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 156/244 (63%), Gaps = 2/244 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C+++LPG S + +P Q+R+ A+A SI ++P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLVLPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
A Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + +
Sbjct: 61 AVHTGSATYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDSP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L + I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T
Sbjct: 121 ETSLTAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL-CLSIEIIVYQF 239
IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL +S+ +V QF
Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLFYVSVAALVSQF 239
Query: 240 SHSF 243
+F
Sbjct: 240 GQAF 243