BLAST/PSIBLAST alignment of GI: 254780511 and GI: 86356338 at iteration 1
>gi|86356338|ref|YP_468230.1| flagellar biosynthesis protein FliR [Rhizobium etli CFN 42] Length = 250
>gi|86280440|gb|ABC89503.1| flagellar byosinthesis transmembrane protein [Rhizobium etli CFN 42] Length = 250
 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 104/244 (42%), Positives = 156/244 (63%), Gaps = 2/244 (0%)

Query: 1   MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
           M   P+  +++LFL+ CR+G C+++LPG S + +P Q+R+  A+A SI ++P LWDT+  
Sbjct: 1   MITDPQGTVLALFLVFCRIGGCVLVLPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60

Query: 61  QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
                 A Y  L+  E  +G ++G+L R+YTLG+QF  ++I+  +G     S  + +   
Sbjct: 61  AVHTGSATYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDSP 120

Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
           ET L + I   G++ L+++DFHH VF AL+ SY T+P G          SF + L+ T  
Sbjct: 121 ETSLTAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180

Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL-CLSIEIIVYQF 239
           IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL  +S+  +V QF
Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLFYVSVAALVSQF 239

Query: 240 SHSF 243
             +F
Sbjct: 240 GQAF 243