BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62] (248 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62] gi|254040188|gb|ACT56984.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62] Length = 248 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 248/248 (100%), Positives = 248/248 (100%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL Sbjct: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA Sbjct: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM Sbjct: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS Sbjct: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 Query: 241 HSFLYGFF 248 HSFLYGFF Sbjct: 241 HSFLYGFF 248 >gi|315122292|ref|YP_004062781.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495694|gb|ADR52293.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 247 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/243 (78%), Positives = 216/243 (88%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M SPEII+MSLFLI CR+GSCIM LPG SM Y+PMQVR F+M FSIVLLPFLWDTIDL Sbjct: 1 MIASPEIIIMSLFLICCRIGSCIMFLPGFSMPYVPMQVRFFFSMTFSIVLLPFLWDTIDL 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q F +RAYY KLV+VELFLGCVHG+L+R+YT GLQF GSVISTAIGLNLQ+SMGISDS+ Sbjct: 61 QIFADRAYYLKLVIVELFLGCVHGVLVRIYTFGLQFMGSVISTAIGLNLQSSMGISDSIP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET +SLIG IGLLALW+IDFHHQ+FYALVKSYGT PIG+EL+F NIFSS +N+LQ TF+ Sbjct: 121 ETSFSSLIGTIGLLALWIIDFHHQIFYALVKSYGTTPIGKELHFDNIFSSLINILQMTFI 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFLFFY+VFNISIG LNK+VPQIP+YFISTPY++GLG LFL SIE+I+YQF Sbjct: 181 IMLRLSSPFLFFYVVFNISIGFLNKIVPQIPVYFISTPYMVGLGFLFLYSSIEMIIYQFI 240 Query: 241 HSF 243 HSF Sbjct: 241 HSF 243 >gi|222084893|ref|YP_002543422.1| flagellar byosinthesis transmembrane protein [Agrobacterium radiobacter K84] gi|221722341|gb|ACM25497.1| flagellar byosinthesis transmembrane protein [Agrobacterium radiobacter K84] Length = 250 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/244 (47%), Positives = 156/244 (63%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL CR+G C+M+LPG S +P Q+RL A A S+ +LP LW+TI Sbjct: 1 MISDPQGTILALFLAFCRIGGCVMVLPGFSSGRVPPQIRLLLAAALSMAILPLLWNTIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + A Y L+ E +G ++G++ R+YTLGLQF G+VIS IG N M + + Sbjct: 61 EVSKSSATYISLIFTETVIGLMYGMMARLYTLGLQFAGTVISMLIGFNAPGGMDVIEDSN 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L SLI GL+ L+V+DFHH V ALV+SY IP G ++ S + L TT Sbjct: 121 ETSLTSLISFCGLMILFVLDFHHYVLQALVESYSVIPFGGHVDVRASLISVTDTLATTTF 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRL+SPFL + ++F ISIG +NKL PQIPIYFISTPYL+ G L LSI ++ QFS Sbjct: 181 IMLRLASPFLLYGLMFQISIGFINKLAPQIPIYFISTPYLLMGGLFMLYLSIAAMISQFS 240 Query: 241 HSFL 244 +FL Sbjct: 241 GAFL 244 >gi|209547954|ref|YP_002279871.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533710|gb|ACI53645.1| type III secretion system inner membrane R protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 250 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 110/247 (44%), Positives = 161/247 (65%), Gaps = 8/247 (3%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A+A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L++ E +G ++G+L R+YTLG+QF ++I+T +G T G +D + Sbjct: 61 AVHTGSGTYIGLIVSESLIGVMYGMLARIYTLGMQFAATIIATMVGY---TQPGSADIIE 117 Query: 121 ETPLNSLIGII---GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177 +TP +SL G I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ Sbjct: 118 DTPESSLSGFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFSDTLEQ 177 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIV 236 T IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL SI +V Sbjct: 178 TTYIMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLVYFSIAALV 236 Query: 237 YQFSHSF 243 QF SF Sbjct: 237 SQFGQSF 243 >gi|218681681|ref|ZP_03529482.1| flagellar biosynthesis protein FliR [Rhizobium etli CIAT 894] Length = 250 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 110/247 (44%), Positives = 161/247 (65%), Gaps = 8/247 (3%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C+++LPG S + +P Q+R+ A A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLVLPGFSSARVPEQLRVFIAGALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++GLL R+YTLG+QF ++++T +G T G +D + Sbjct: 61 AVHTGSPTYIGLIFSESLVGVMYGLLARIYTLGMQFAATILATMVGY---TQPGSADIIE 117 Query: 121 ETPLNSLIGII---GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177 +TP +SL G I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ Sbjct: 118 DTPESSLSGFITFAGIMILFMMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQ 177 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIV 236 T IMLRL+SPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL SI +V Sbjct: 178 TTYIMLRLASPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLIYFSIAAMV 236 Query: 237 YQFSHSF 243 QFS SF Sbjct: 237 SQFSQSF 243 >gi|116250508|ref|YP_766346.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. viciae 3841] gi|115255156|emb|CAK06230.1| putative flagellar biosynthetic protein FliR [Rhizobium leguminosarum bv. viciae 3841] Length = 250 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 106/244 (43%), Positives = 153/244 (62%), Gaps = 2/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPQQLRVFIAGALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF S+ + +G S I + Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAASITAMMVGYTQPGSADILEDTP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L++ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T Sbjct: 121 ETSLSAFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIVYQF 239 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL SI +V QF Sbjct: 181 IMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLIYFSIAAMVSQF 239 Query: 240 SHSF 243 SF Sbjct: 240 GQSF 243 >gi|86356338|ref|YP_468230.1| flagellar biosynthesis protein FliR [Rhizobium etli CFN 42] gi|86280440|gb|ABC89503.1| flagellar byosinthesis transmembrane protein [Rhizobium etli CFN 42] Length = 250 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 104/244 (42%), Positives = 156/244 (63%), Gaps = 2/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C+++LPG S + +P Q+R+ A+A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLVLPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 A Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + + Sbjct: 61 AVHTGSATYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDSP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L + I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T Sbjct: 121 ETSLTAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL-CLSIEIIVYQF 239 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL +S+ +V QF Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLFYVSVAALVSQF 239 Query: 240 SHSF 243 +F Sbjct: 240 GQAF 243 >gi|241203132|ref|YP_002974228.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857022|gb|ACS54689.1| type III secretion system inner membrane R protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 250 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 110/247 (44%), Positives = 157/247 (63%), Gaps = 8/247 (3%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPDQLRVFIAGALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G T G +D L Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGY---TQPGSADILE 117 Query: 121 ETPLNSLIGII---GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177 +TP SL G I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ Sbjct: 118 DTPETSLSGFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQ 177 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIV 236 T IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL SI +V Sbjct: 178 TTYIMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLIYFSIAAMV 236 Query: 237 YQFSHSF 243 QF SF Sbjct: 237 SQFGQSF 243 >gi|218463239|ref|ZP_03503330.1| flagellar biosynthesis protein FliR [Rhizobium etli Kim 5] Length = 250 Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 104/244 (42%), Positives = 155/244 (63%), Gaps = 2/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI +LP LWDT+ Sbjct: 1 MISDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVLPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S +++ Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVTEDSP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L++ I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T Sbjct: 121 ETSLSAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL-CLSIEIIVYQF 239 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL +S+ +V QF Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLFYVSVAALVSQF 239 Query: 240 SHSF 243 +F Sbjct: 240 GQAF 243 >gi|190890390|ref|YP_001976932.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] gi|190695669|gb|ACE89754.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] Length = 250 Score = 204 bits (519), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 105/244 (43%), Positives = 153/244 (62%), Gaps = 2/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI L+P LWDT+ Sbjct: 1 MIADPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIALMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + + Sbjct: 61 AVHTGAGTYIGLIFSESLVGLMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDAP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L+ I G++ L+++DFHH VF ALV SY T+P G SF + L+ T Sbjct: 121 ETSLSGFITFAGIMILFIMDFHHIVFRALVDSYTTMPFGGVTQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL-CLSIEIIVYQF 239 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL +S+ +V QF Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLFYVSVAALVSQF 239 Query: 240 SHSF 243 +F Sbjct: 240 GQAF 243 >gi|218662875|ref|ZP_03518805.1| flagellar biosynthesis protein FliR [Rhizobium etli IE4771] Length = 250 Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 103/244 (42%), Positives = 154/244 (63%), Gaps = 2/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+ Sbjct: 1 MISDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + + Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDSP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L++ I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T Sbjct: 121 ETSLSAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL-CLSIEIIVYQF 239 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL +S+ +V QF Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLFYVSVAALVSQF 239 Query: 240 SHSF 243 +F Sbjct: 240 GQAF 243 >gi|222147597|ref|YP_002548554.1| flagellar biosynthesis protein FliR [Agrobacterium vitis S4] gi|221734585|gb|ACM35548.1| flagellar biosynthetic protein FLIR [Agrobacterium vitis S4] Length = 250 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 156/244 (63%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+GSC M +PG + S IP Q+RL A+A S+ P +WDT+ Sbjct: 1 MITDPQGSVLALFLVFCRIGSCFMTMPGFASSRIPTQIRLLLAVAVSMACTPLVWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + + L+ E +G V GL+ R +TLGLQF G++++ IG N + + + A Sbjct: 61 KVSSGGSIFVALIFTETLIGAVFGLITRFFTLGLQFAGAILTMMIGFNSTATADVLEDGA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E + ++I GL+ L+++DFHH VF AL+ SY +P+G + + + + T+M Sbjct: 121 ENQMTNMISFCGLMMLFMMDFHHVVFRALIDSYTVMPMGGVPDTQKMLITLTDTASRTYM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +MLRLSSPF+ + ++FN+ +GL+NKL PQIP+Y+ISTPYLI G L + SI +++ QF+ Sbjct: 181 LMLRLSSPFIIYGLMFNLGVGLVNKLAPQIPVYYISTPYLITGGMLLVYWSIGVMMRQFA 240 Query: 241 HSFL 244 +F+ Sbjct: 241 DAFI 244 >gi|15964440|ref|NP_384793.1| flagellar biosynthesis protein FliR [Sinorhizobium meliloti 1021] gi|307311582|ref|ZP_07591223.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti BL225C] gi|15073617|emb|CAC45259.1| Probable flagellar biosynthetic transmembrane protein [Sinorhizobium meliloti 1021] gi|306899599|gb|EFN30228.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti BL225C] Length = 250 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 104/244 (42%), Positives = 152/244 (62%), Gaps = 2/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE ++++LF CR+G C+M++PG S + +PMQ+RL A+A S+ +LP +W I Sbjct: 1 MITDPEGMVLALFAAFCRIGGCVMIMPGFSTARVPMQIRLFIAVALSMAILPIMWTDIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y LV E +G V GL+ R Y LGLQF G+ I+ +G + + + A Sbjct: 61 QVTGKGHDYLYLVATETAIGAVIGLVARYYVLGLQFAGTAITMLMGFGSPPAADVLEDTA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E L S+IG GL+ L+++DFHH +F A+ +SY +PIG + + N L TFM Sbjct: 121 ENQLTSMIGFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGTLITLTNSLGQTFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIVYQF 239 IMLRL+SPF+ + ++FN++IG++NKL PQIP+YFIS PYLI +G LFL L I ++ F Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLI-MGGLFLLYLGIAAMLRLF 239 Query: 240 SHSF 243 + F Sbjct: 240 ADGF 243 >gi|307318937|ref|ZP_07598368.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti AK83] gi|306895351|gb|EFN26106.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti AK83] Length = 250 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 104/244 (42%), Positives = 151/244 (61%), Gaps = 2/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE +++LF CR+G C+M++PG S + +PMQ+RL A+A S+ +LP +W I Sbjct: 1 MITDPEGTVLALFAAFCRIGGCVMIMPGFSTARVPMQIRLFIAVALSMAILPIMWTDIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y LV E +G V GL+ R Y LGLQF G+ I+ +G + + + A Sbjct: 61 QVTGKGHDYLYLVATETAVGAVIGLVARYYVLGLQFAGTAITMLMGFGSPPAADVLEDTA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E L S+IG GL+ L+++DFHH +F A+ +SY +PIG + + N L TFM Sbjct: 121 ENQLTSMIGFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGTLITLTNSLGQTFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIVYQF 239 IMLRL+SPF+ + ++FN++IG++NKL PQIP+YFIS PYLI +G LFL L I ++ F Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLI-MGGLFLLYLGIAAMLRLF 239 Query: 240 SHSF 243 + F Sbjct: 240 ADGF 243 >gi|325291970|ref|YP_004277834.1| flagellar biosynthesis protein FliR [Agrobacterium sp. H13-3] gi|325059823|gb|ADY63514.1| flagellar biosynthesis protein FliR [Agrobacterium sp. H13-3] Length = 251 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 156/244 (63%), Gaps = 1/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL +CR+G+C M +PG S S I Q+R+ +A S+ LLP LWDTI Sbjct: 1 MITDPQGTIIALFLAICRIGACFMTMPGFSSSRISPQIRILLCVAVSMALLPVLWDTIYP 60 Query: 61 Q-NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + + ++ L+ E+ +G ++GL+ R YTLG QFTG++I +IGL+ + + Sbjct: 61 KVSGASQGAVVGLIFTEIVIGAMYGLIARFYTLGFQFTGALIGASIGLSAPGGADAVEDV 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 E +++ I GL+ L+++DFHH V ALV SY T P+G ++ + + + L+ +F Sbjct: 121 QENQISNFITFGGLMVLFILDFHHIVLRALVDSYATTPVGALISGQKMLITLTDTLRASF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 IMLRL+SPF+ + ++FN+++GL+NKL PQIP+YFISTP+++ G L LSI ++ QF Sbjct: 181 SIMLRLASPFVIYGLMFNVAVGLINKLAPQIPVYFISTPFVLAGGIFMLYLSIAALIRQF 240 Query: 240 SHSF 243 F Sbjct: 241 VDGF 244 >gi|150395511|ref|YP_001325978.1| flagellar biosynthesis protein FliR [Sinorhizobium medicae WSM419] gi|150027026|gb|ABR59143.1| flagellar biosynthetic protein FliR [Sinorhizobium medicae WSM419] Length = 250 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 149/243 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE +++LF CR+G CIM++PG S + +PMQ+RL A+A S+ +LP +W I Sbjct: 1 MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y LV E +G V GL+ R Y LGLQF G+ ++ +G + + + + A Sbjct: 61 QVTGKGHDYLYLVATETAVGAVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E L SLI GL+ L+++DFHH +F A+ +SY +PIG + + + N L+ TFM Sbjct: 121 ENQLTSLISFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGMLITLTNSLEQTFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRL+SP + + ++FN++IG++NKL PQIP+YFIS PYLI G L L I ++ F+ Sbjct: 181 IMLRLASPLVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA 240 Query: 241 HSF 243 F Sbjct: 241 DGF 243 >gi|227820883|ref|YP_002824853.1| flagellar biosynthesis protein FliR [Sinorhizobium fredii NGR234] gi|227339882|gb|ACP24100.1| flagellar biosynthesis protein FliR [Sinorhizobium fredii NGR234] Length = 250 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 137/218 (62%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE +++LF CR+G CIM++PG S + +PMQVRL A+A S+ +LP +W I Sbjct: 1 MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQVRLFIAVALSMAILPIMWTDIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y L+ E +G V GL+ R Y LGLQF G+ I+ IG N + + + A Sbjct: 61 QVAGKGHTYIYLIATESVIGAVIGLVARYYVLGLQFAGTAITMLIGFNPPPATDVLEETA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E L S+I GL+ L+++DFHH +F A+ +SY +PIG + + + N L TF+ Sbjct: 121 ENQLTSMISFAGLMLLFMLDFHHVIFEAIAQSYRVMPIGIGFDPQGMLITLTNSLGQTFL 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 IMLRL+SPF+ + ++FN++IG++N+L PQ+P+YFIS P Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNRLAPQVPVYFISQP 218 >gi|159184373|ref|NP_353608.2| flagellar biosynthesis protein FliR [Agrobacterium tumefaciens str. C58] gi|159139686|gb|AAK86393.2| flagellar biosynthetic protein FLIR [Agrobacterium tumefaciens str. C58] Length = 240 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 148/233 (63%), Gaps = 1/233 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-NFVNRAYYS 70 +FL +CR+G+C M +PG S S I Q+R+ +A S+ LLP LWDTI + + ++ Sbjct: 1 MFLAICRIGACFMTMPGFSSSRISPQIRMLLCVAVSMALLPVLWDTIYPKVSGASQGAVV 60 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+ E+ +G ++GL+ R YTLG QFTG++I +IGL+ + + E + + I Sbjct: 61 GLIFSEVLIGAMYGLIARFYTLGFQFTGALIGASIGLSAPGGADPIEDVQENQIANFITF 120 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 GLL L+++DFHH V ALV SY P+G ++ + + + L+ +F IMLRL+SPF+ Sbjct: 121 GGLLVLFMMDFHHIVLKALVDSYSATPVGALISGQKMLITLTDTLRASFSIMLRLASPFV 180 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++FN+++GL+NKL PQIP++FISTP+++ G L LS+ ++ QF F Sbjct: 181 IYGLMFNVAVGLINKLAPQIPVFFISTPFVLAGGLFMLYLSVAALIRQFVDGF 233 >gi|163758040|ref|ZP_02165128.1| flagellar biosynthesis protein R [Hoeflea phototrophica DFL-43] gi|162284329|gb|EDQ34612.1| flagellar biosynthesis protein R [Hoeflea phototrophica DFL-43] Length = 251 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 130/218 (59%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE +++LF CR+G CIM+LPG S +P+Q+RL A+A S+ LLP LW+T+ Sbjct: 1 MMSDPEGTILALFAAFCRIGGCIMVLPGFSSFRVPVQIRLFIAVAISMALLPMLWETLYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ EL +G GL+ R L LQF G+ +S AIG N G+ ++ Sbjct: 61 NVQTGGGIYIGLIGTELLIGVTFGLIARYIVLALQFAGTGLSMAIGFNAAPGGGLLETEQ 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E + SLI +L L++ DFHH V AL++SY +P+G + + + L FM Sbjct: 121 EGNITSLITFTAVLLLFLSDFHHMVIEALLRSYDFMPLGSGFDPQMALMTLTDTLAGAFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++LRL+SPFL + + FN+SIGL+NKL P IP+YFI+ P Sbjct: 181 LVLRLASPFLVYSMAFNLSIGLINKLAPAIPVYFITIP 218 >gi|110632632|ref|YP_672840.1| flagellar biosynthesis protein FliR [Mesorhizobium sp. BNC1] gi|110283616|gb|ABG61675.1| flagellar biosynthetic protein FliR [Chelativorans sp. BNC1] Length = 248 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 133/240 (55%), Gaps = 1/240 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 PE +++ FL CRVG+C ML+PGL + +PMQVRL A+ S+ LL LWD I Sbjct: 2 PETAILAAFLAFCRVGACFMLMPGLGSARVPMQVRLFVAVGASLALLAHLWDVIAPHASD 61 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS-MGISDSLAETP 123 L+ E+ +G + GL+ R+Y L LQF GS I+ G + + I ++ + Sbjct: 62 RPDILLLLIGSEILIGSLIGLVARLYVLALQFIGSAIALMTGFGMAAGGVAIEENEPQPA 121 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + +LI L+ L+V++FHH + ALV SY PI + + + L F +M+ Sbjct: 122 VAALISFSALMLLFVLNFHHAIIEALVASYRLAPIEALFDPRAALTDIADTLSEAFFVMI 181 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 RL SPF+ + I+ N++ G +NKL PQIPIYFIS P++I G L L I + F+ F Sbjct: 182 RLGSPFVAYAILINLAFGFINKLTPQIPIYFISLPFVIAGGLLLLYFGIGTFLSLFADGF 241 >gi|13472611|ref|NP_104178.1| flagellar biosynthesis protein FliR [Mesorhizobium loti MAFF303099] gi|14023357|dbj|BAB49964.1| flagellar biosynthesis protein; FliR [Mesorhizobium loti MAFF303099] Length = 250 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 136/244 (55%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I Sbjct: 1 MSVLSQSVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDRIIP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 +++ EL +G + G + R+Y L+F GS I+ IG I + Sbjct: 61 FVDPRPQILVPMIISELLIGGLIGAMTRLYMEALRFMGSAIAMLIGYGGSGGPAIEEPEP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L ++I LL L+V DF H++ ALV SY P+ N + + TF Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIVRALVASYTVAPVNVFFNPQAALVDITDTVSDTFF 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +++RL SPF+ + I+ N++IG +NKL PQIPIYFIS P++I G + +I ++ F Sbjct: 181 LVIRLGSPFVAYAILVNLTIGFVNKLTPQIPIYFISQPFVIAGGMIIFYFAIGTMLSLFV 240 Query: 241 HSFL 244 F+ Sbjct: 241 DGFV 244 >gi|319781654|ref|YP_004141130.1| flagellar biosynthetic protein FliR [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167542|gb|ADV11080.1| flagellar biosynthetic protein FliR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 250 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 136/244 (55%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I Sbjct: 1 MSVLSQGVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDKIFP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 +++ EL +G + G + R+Y L+F GS I+ +G I + Sbjct: 61 FVDPRPQILVPMIISELLVGGLIGAMTRLYMEALRFMGSAIAMLVGYGGTGGPAIEEPEP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L ++I LL L+V DF H++ ALV SY P+ N + + TF Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIIRALVSSYTVAPVNIFFNPQAALVDVTDTVSDTFF 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +++RL SPF+ + I+ N++IG +NKL PQIPIYFIS P++I G + ++ ++ F Sbjct: 181 LVIRLGSPFVAYAILVNLTIGFVNKLTPQIPIYFISQPFIIAGGMIIFYFAVGTMLSLFV 240 Query: 241 HSFL 244 F+ Sbjct: 241 DGFV 244 >gi|260466592|ref|ZP_05812780.1| flagellar biosynthetic protein FliR [Mesorhizobium opportunistum WSM2075] gi|259029598|gb|EEW30886.1| flagellar biosynthetic protein FliR [Mesorhizobium opportunistum WSM2075] Length = 250 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 136/244 (55%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I Sbjct: 1 MSVLSQSVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDKIFP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 +++ EL +G + G + R+Y L+F GS I+ IG I + Sbjct: 61 FVDARPQILVPMIISELLVGGLIGAMTRLYMEALRFMGSAIAMLIGYGGSGGPAIEEPEP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L ++I LL L+V DF H++ ALV SY P+ N + + TF Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIIRALVTSYTVAPVNIFFNPQAALVDVADTVSDTFF 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +++RL SPF+ + ++ N++IG +NKL PQIPIYFIS P++I G + +I ++ F Sbjct: 181 LVIRLGSPFVAYALLVNLTIGFVNKLTPQIPIYFISQPFVIVGGMIIFYFAIGTMLSLFV 240 Query: 241 HSFL 244 F+ Sbjct: 241 DGFV 244 >gi|90418351|ref|ZP_01226263.1| putative flagellar biosynthesis protein FliR [Aurantimonas manganoxydans SI85-9A1] gi|90338023|gb|EAS51674.1| putative flagellar biosynthesis protein FliR [Aurantimonas manganoxydans SI85-9A1] Length = 251 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 139/246 (56%), Gaps = 5/246 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M++ ++ SLFLI CR GSC++L+PG S S +P+QVRL ++A S+ L P L T L Sbjct: 1 MSVELSELVFSLFLIFCRFGSCLLLMPGFSSSRVPLQVRLFLSLAVSVALSPALLPT--L 58 Query: 61 QNFVNRAYYS---KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117 Q V A + L++ E+ G GLL R + + LQF G V++ +IG+ +Q + I + Sbjct: 59 QPLVAAADDNGKLALMISEILNGLFIGLLGRSFMIALQFAGHVVANSIGMGMQMGVPIDE 118 Query: 118 SLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177 S + SLI + ++V++ H ++ ALV SY +P + + + L Sbjct: 119 SDPMPAVASLITLTATTLIFVLNLHAEIARALVASYTAMPAAAGFSIRGSLVNITDNLDE 178 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 F++ LR+SSPF+ + +V N +IGL NKL P IPIYFIS P+++ G + L +I + Sbjct: 179 AFLLCLRISSPFVLYGVVVNFAIGLANKLTPTIPIYFISLPFVLAGGLVLLGYTISDFLI 238 Query: 238 QFSHSF 243 F F Sbjct: 239 LFMQDF 244 >gi|239834419|ref|ZP_04682747.1| flagellar biosynthetic protein FliR [Ochrobactrum intermedium LMG 3301] gi|239822482|gb|EEQ94051.1| flagellar biosynthetic protein FliR [Ochrobactrum intermedium LMG 3301] Length = 255 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPF-LWDTIDLQNFV 64 EII+ ++ L CR+G+C+ML+PGLS + IP+QVRL A+A S +LP L I + + Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGLSSARIPLQVRLFIALACSFAVLPLVLQRIITVVDAG 68 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 +L+ E+F+G V G+L +Y LQF S ++ +IG + + I++S + L Sbjct: 69 QPLTLFRLMASEIFIGAVIGILAHIYFWALQFMASTMAVSIGYSGSPADAITESEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L ++ D H ++F AL+ SY IP+ + + F + L F+ LR Sbjct: 129 ATIVTFSALFLFFITDMHLEIFRALLNSYVAIPVDGQFRPDAVMIDFTDALSGAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +++PF+ F I+ N +IGL+NKL P IP+YF+S P+++G G Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPTIPVYFVSMPFVLGGG 228 >gi|153011500|ref|YP_001372714.1| flagellar biosynthesis protein FliR [Ochrobactrum anthropi ATCC 49188] gi|151563388|gb|ABS16885.1| flagellar biosynthetic protein FliR [Ochrobactrum anthropi ATCC 49188] Length = 255 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 130/220 (59%), Gaps = 2/220 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PGLS + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGLSSARIPLQVRLYIALACSFAVLPLVLQRIVTVVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L+ E+F+G V G+L +Y LQF S ++ ++G + + I++S + L Sbjct: 69 QPWTLFRLMASEMFVGAVIGILAHIYFWALQFMASTMAVSVGYSGSPADAITESEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L ++ D H ++F AL+ SY IP+ + F + L F+ LR Sbjct: 129 ATIVTFSALFLFFITDMHLEIFRALLNSYVAIPVDGQFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +++PF+ F I+ N +IGL+NKL P IP+YF+S P+++G G Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPTIPVYFVSMPFVLGGG 228 >gi|256059812|ref|ZP_05450007.1| flagellar biosynthesis protein FliR [Brucella neotomae 5K33] gi|261323792|ref|ZP_05962989.1| flagellar biosynthetic protein FliR [Brucella neotomae 5K33] gi|261299772|gb|EEY03269.1| flagellar biosynthetic protein FliR [Brucella neotomae 5K33] Length = 255 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 140/238 (58%), Gaps = 2/238 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY TIP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVTIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246 >gi|158422279|ref|YP_001523571.1| flagellar biosynthesis protein FliR [Azorhizobium caulinodans ORS 571] gi|158329168|dbj|BAF86653.1| type III secretion system inner membrane R protein [Azorhizobium caulinodans ORS 571] Length = 249 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 132/218 (60%), Gaps = 8/218 (3%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 ++ ++S FL+ CR+GSCIM++PGLS +P++VRL A+A S+ +LP ++D DL NF+ Sbjct: 5 DVSILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYD--DLVNFIR 62 Query: 66 RAYYSKLVM---VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 A ++L++ E+ G + G L R++ L LQ I+ IGL+ + MG+ + Sbjct: 63 NANSAQLLLSIGTEMATGAIIGTLARIFYLMLQMMLVAIAQFIGLS--SPMGLPEDGEVL 120 Query: 123 P-LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 P L +L+ + +++ D H+++ L+ SY IP+G + L MI Sbjct: 121 PSLATLMILAATTMMFLTDQHYEMLRGLIASYRQIPVGVGFGGRGALIQASDQLSAALMI 180 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY 219 +RL+SPFL + ++ N ++GL+NKLVPQIP+YFIS P+ Sbjct: 181 AMRLASPFLIYSLIINFAVGLINKLVPQIPVYFISAPF 218 >gi|23500846|ref|NP_700286.1| flagellar biosynthesis protein FliR [Brucella suis 1330] gi|161621174|ref|YP_001595060.1| flagellar biosynthesis protein FliR [Brucella canis ATCC 23365] gi|254699255|ref|ZP_05161083.1| flagellar biosynthesis protein FliR [Brucella suis bv. 5 str. 513] gi|254702375|ref|ZP_05164203.1| flagellar biosynthesis protein FliR [Brucella suis bv. 3 str. 686] gi|254711811|ref|ZP_05173622.1| flagellar biosynthesis protein FliR [Brucella ceti M644/93/1] gi|254714879|ref|ZP_05176690.1| flagellar biosynthesis protein FliR [Brucella ceti M13/05/1] gi|256015890|ref|YP_003105899.1| flagellar biosynthesis protein FliR [Brucella microti CCM 4915] gi|260568722|ref|ZP_05839191.1| flagellar biosynthesis protein FliR [Brucella suis bv. 4 str. 40] gi|261216568|ref|ZP_05930849.1| flagellar biosynthetic protein FliR [Brucella ceti M13/05/1] gi|261319439|ref|ZP_05958636.1| flagellar biosynthetic protein FliR [Brucella ceti M644/93/1] gi|261749694|ref|ZP_05993403.1| flagellar biosynthetic protein FliR [Brucella suis bv. 5 str. 513] gi|261752938|ref|ZP_05996647.1| flagellar biosynthetic protein FliR [Brucella suis bv. 3 str. 686] gi|23464510|gb|AAN34291.1| flagellar biosynthesis protein FliR, putative [Brucella suis 1330] gi|161337985|gb|ABX64289.1| flagellar biosynthetic protein FliR [Brucella canis ATCC 23365] gi|255998550|gb|ACU50237.1| flagellar biosynthesis protein FliR [Brucella microti CCM 4915] gi|260155387|gb|EEW90468.1| flagellar biosynthesis protein FliR [Brucella suis bv. 4 str. 40] gi|260921657|gb|EEX88225.1| flagellar biosynthetic protein FliR [Brucella ceti M13/05/1] gi|261292129|gb|EEX95625.1| flagellar biosynthetic protein FliR [Brucella ceti M644/93/1] gi|261739447|gb|EEY27373.1| flagellar biosynthetic protein FliR [Brucella suis bv. 5 str. 513] gi|261742691|gb|EEY30617.1| flagellar biosynthetic protein FliR [Brucella suis bv. 3 str. 686] Length = 255 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 139/238 (58%), Gaps = 2/238 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246 >gi|225628421|ref|ZP_03786455.1| flagellar biosynthetic protein FliR [Brucella ceti str. Cudo] gi|254711211|ref|ZP_05173022.1| flagellar biosynthesis protein FliR [Brucella pinnipedialis B2/94] gi|256030160|ref|ZP_05443774.1| flagellar biosynthesis protein FliR [Brucella pinnipedialis M292/94/1] gi|256158339|ref|ZP_05456243.1| flagellar biosynthesis protein FliR [Brucella ceti M490/95/1] gi|256252727|ref|ZP_05458263.1| flagellar biosynthesis protein FliR [Brucella ceti B1/94] gi|260166788|ref|ZP_05753599.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99] gi|261219805|ref|ZP_05934086.1| flagellar biosynthetic protein FliR [Brucella ceti B1/94] gi|261318802|ref|ZP_05957999.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis B2/94] gi|261756165|ref|ZP_05999874.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99] gi|265987191|ref|ZP_06099748.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis M292/94/1] gi|265996854|ref|ZP_06109411.1| flagellar biosynthetic protein FliR [Brucella ceti M490/95/1] gi|225616267|gb|EEH13315.1| flagellar biosynthetic protein FliR [Brucella ceti str. Cudo] gi|260918389|gb|EEX85042.1| flagellar biosynthetic protein FliR [Brucella ceti B1/94] gi|261298025|gb|EEY01522.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis B2/94] gi|261736149|gb|EEY24145.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99] gi|262551151|gb|EEZ07312.1| flagellar biosynthetic protein FliR [Brucella ceti M490/95/1] gi|264659388|gb|EEZ29649.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis M292/94/1] Length = 255 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 139/238 (58%), Gaps = 2/238 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246 >gi|306845411|ref|ZP_07477985.1| flagellar biosynthetic protein FliR [Brucella sp. BO1] gi|306274154|gb|EFM55970.1| flagellar biosynthetic protein FliR [Brucella sp. BO1] Length = 255 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 138/238 (57%), Gaps = 2/238 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L+ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMAGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246 >gi|254720780|ref|ZP_05182591.1| flagellar biosynthesis protein FliR [Brucella sp. 83/13] gi|265985839|ref|ZP_06098574.1| flagellar biosynthetic protein FliR [Brucella sp. 83/13] gi|306840129|ref|ZP_07472914.1| flagellar biosynthetic protein FliR [Brucella sp. NF 2653] gi|264664431|gb|EEZ34692.1| flagellar biosynthetic protein FliR [Brucella sp. 83/13] gi|306404774|gb|EFM61068.1| flagellar biosynthetic protein FliR [Brucella sp. NF 2653] Length = 255 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 139/238 (58%), Gaps = 2/238 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + ++++ + L Sbjct: 69 QPWMLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSVTENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246 >gi|261313959|ref|ZP_05953156.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Brucella pinnipedialis M163/99/10] gi|261302985|gb|EEY06482.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Brucella pinnipedialis M163/99/10] Length = 255 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGEG 228 >gi|294852959|ref|ZP_06793631.1| flagellar biosynthetic protein FliR [Brucella sp. NVSL 07-0026] gi|294818614|gb|EFG35614.1| flagellar biosynthetic protein FliR [Brucella sp. NVSL 07-0026] Length = 245 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 130/218 (59%), Gaps = 2/218 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIG 222 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLG 226 >gi|62317950|ref|YP_223803.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 1 str. 9-941] gi|83269927|ref|YP_419218.1| flagellar biosynthesis protein FliR [Brucella melitensis biovar Abortus 2308] gi|189023201|ref|YP_001932942.1| flagellar biosynthesis protein FliR [Brucella abortus S19] gi|237817495|ref|ZP_04596486.1| flagellar biosynthetic protein FliR [Brucella abortus str. 2308 A] gi|254691620|ref|ZP_05154874.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 6 str. 870] gi|254695084|ref|ZP_05156912.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 3 str. Tulya] gi|254698181|ref|ZP_05160009.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 2 str. 86/8/59] gi|254731626|ref|ZP_05190204.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 4 str. 292] gi|256256807|ref|ZP_05462343.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 9 str. C68] gi|260544134|ref|ZP_05819955.1| flagellar biosynthesis protein FliR [Brucella abortus NCTC 8038] gi|260757250|ref|ZP_05869598.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 6 str. 870] gi|260759385|ref|ZP_05871733.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 4 str. 292] gi|260762628|ref|ZP_05874960.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 2 str. 86/8/59] gi|260883054|ref|ZP_05894668.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 9 str. C68] gi|261215436|ref|ZP_05929717.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 3 str. Tulya] gi|297250158|ref|ZP_06933859.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 5 str. B3196] gi|62198143|gb|AAX76442.1| hypothetical FliR, flagellar biosynthesis protein [Brucella abortus bv. 1 str. 9-941] gi|82940201|emb|CAJ13254.1| Bacterial export protein, family 1:Flagellar biosynthesis protein FliR [Brucella melitensis biovar Abortus 2308] gi|189021775|gb|ACD74496.1| Flagellar biosynthesis protein FliR [Brucella abortus S19] gi|237787330|gb|EEP61547.1| flagellar biosynthetic protein FliR [Brucella abortus str. 2308 A] gi|260097405|gb|EEW81279.1| flagellar biosynthesis protein FliR [Brucella abortus NCTC 8038] gi|260669703|gb|EEX56643.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 4 str. 292] gi|260673049|gb|EEX59870.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 2 str. 86/8/59] gi|260677358|gb|EEX64179.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 6 str. 870] gi|260872582|gb|EEX79651.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 9 str. C68] gi|260917043|gb|EEX83904.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 3 str. Tulya] gi|297174027|gb|EFH33391.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 5 str. B3196] Length = 255 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 138/238 (57%), Gaps = 2/238 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QV L A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVCLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246 >gi|17988512|ref|NP_541145.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. 16M] gi|225686878|ref|YP_002734850.1| flagellar biosynthesis protein FliR [Brucella melitensis ATCC 23457] gi|256261987|ref|ZP_05464519.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 2 str. 63/9] gi|17984304|gb|AAL53409.1| flagellar biosynthetic protein flir [Brucella melitensis bv. 1 str. 16M] gi|225642983|gb|ACO02896.1| flagellar biosynthetic protein FliR [Brucella melitensis ATCC 23457] gi|263091471|gb|EEZ16007.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 2 str. 63/9] gi|326411294|gb|ADZ68358.1| flagellar biosynthesis protein FliR [Brucella melitensis M28] gi|326554583|gb|ADZ89222.1| flagellar biosynthesis protein FliR [Brucella melitensis M5-90] Length = 255 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 138/238 (57%), Gaps = 2/238 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFS-IVLLPFLWDTIDLQNFV 64 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S VLL L + + Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLLLVLQRIVTAVDAG 68 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246 >gi|254503465|ref|ZP_05115616.1| Bacterial export protein, family 1 [Labrenzia alexandrii DFL-11] gi|222439536|gb|EEE46215.1| Bacterial export protein, family 1 [Labrenzia alexandrii DFL-11] Length = 258 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 7/243 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++ FL+ CR+G+C+M++PG + IPM+VRL A S+ L P L I Q + A Sbjct: 15 LVLATFLLFCRIGACLMVIPGFGSNRIPMRVRLFVAFGISLALSPLLVPDIQ-QALPDEA 73 Query: 68 --YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 S + EL G G L R++ L+ +++S AIGL+ M I A P+ Sbjct: 74 LGTVSFFIGAELLTGLFIGFLGRIFIAALETLTTLVSMAIGLSNMPGMPIDGVDALPPVA 133 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 +L + +++ D H ++ LV+SY IP G+ L F L TF++ LR+ Sbjct: 134 NLFTLTATAMIFIADQHWEILRGLVQSYEVIPPGRPLAAMASLEQFAEQLARTFVLALRV 193 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 SPF+ + IV N+++GL+NKL PQIP+YFIS P++I G FL L + + FL Sbjct: 194 VSPFIVYTIVVNLAVGLINKLTPQIPVYFISLPFVIAGGLYFLYL----VAAEAIMIFLD 249 Query: 246 GFF 248 G+F Sbjct: 250 GYF 252 >gi|256112184|ref|ZP_05453105.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 3 str. Ether] gi|265993611|ref|ZP_06106168.1| flagellar biosynthetic protein FliR [Brucella melitensis bv. 3 str. Ether] gi|262764481|gb|EEZ10513.1| flagellar biosynthetic protein FliR [Brucella melitensis bv. 3 str. Ether] Length = 255 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 129/220 (58%), Gaps = 2/220 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFS-IVLLPFLWDTIDLQNFV 64 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S VLL L + + Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLLLVLQRIVTAVDAG 68 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFPATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGG 228 >gi|118589958|ref|ZP_01547362.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614] gi|118437455|gb|EAV44092.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614] Length = 258 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 132/242 (54%), Gaps = 5/242 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR- 66 +++++FL+ CR+G+C+M++PG + +P+ VRL A++ ++ L P L + + Sbjct: 15 LLLAVFLLFCRIGACLMVIPGFGSNRVPVHVRLFIALSVALALSPLLAPGVQASLPDEQL 74 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + EL G G L R++ L+ +++S AIGL+ M I + P+ + Sbjct: 75 GTVAGFIGAELLTGAFIGFLGRIFLAALETLTTLVSMAIGLSNMPGMPIDGVDSLPPVAN 134 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L + +++ + H ++ L SY IP+GQ L F L TF++ LR+ Sbjct: 135 LFTVTATAMVFITNQHWEILRGLAASYEAIPVGQPLAAVTGLEQFAEQLAKTFLLALRVC 194 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 SPF+ + +V N ++GL+NKL PQIP+YFIS P++I G FL L ++ + FL G Sbjct: 195 SPFIVYTVVVNFAVGLVNKLTPQIPVYFISMPFVIAGGLYFLYL----VIAEAIMIFLDG 250 Query: 247 FF 248 +F Sbjct: 251 YF 252 >gi|148558044|ref|YP_001257996.1| flagellar biosynthesis protein FliR [Brucella ovis ATCC 25840] gi|148369329|gb|ABQ62201.1| flagellar biosynthetic protein FliR [Brucella ovis ATCC 25840] Length = 239 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 123/211 (58%), Gaps = 2/211 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ ++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 10 EIILAAV-LAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAG 68 Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + +L++ E+F+G + G+L +Y QF ++++ A+G + + I+++ + L Sbjct: 69 QPWTLFRLMVGEMFIGALIGILAHIYFWAQQFMANMMAMAVGYSGSPADSITENEPQATL 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ L +V D H ++F AL+ SY IP+ F + L F+ LR Sbjct: 129 ATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLR 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFI 215 +++PF+ F I+ N +IGL+NKL P IP+YFI Sbjct: 189 IAAPFIVFAILVNFAIGLVNKLTPAIPVYFI 219 >gi|121602553|ref|YP_989418.1| flagellar biosynthesis protein FliR [Bartonella bacilliformis KC583] gi|120614730|gb|ABM45331.1| flagellar biosynthetic protein FliR [Bartonella bacilliformis KC583] Length = 265 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 125/216 (57%), Gaps = 2/216 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNRAYYSKL 72 L+ RVG+C+ML+PG+S IP+QVRL A++FS+++LP + D D + A + + Sbjct: 27 LVFARVGACLMLMPGVSSIRIPVQVRLFIAVSFSLIILPMVADFFKDFGEKPDFALFVRA 86 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G G++ VY LQF ++I+ ++G + Q + DS ET + L+ ++G Sbjct: 87 LCSEMLIGVTFGVIAHVYLWALQFMATIIAMSMGYSGQPGHNVIDSTPETQIAHLLVLVG 146 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + D H L+ SY + N + + L F+ LR+++PF+ + Sbjct: 147 VMLFFASDLHMFAIRGLLASYDVVSPVFIPNPEAALIDYRDALSKAFLTTLRIAAPFIVY 206 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 ++ NI++GL+NKL P IP+YFIS P+++ G LFL Sbjct: 207 AVLVNIAVGLVNKLTPNIPVYFISLPFVVA-GGLFL 241 >gi|328545480|ref|YP_004305589.1| Bacterial export protein, family 1 [polymorphum gilvum SL003B-26A1] gi|326415221|gb|ADZ72284.1| Bacterial export protein, family 1 [Polymorphum gilvum SL003B-26A1] Length = 258 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 137/230 (59%), Gaps = 2/230 (0%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQN 62 P+ ++ + FL+ CR+G+C+M++PG S I +++RL A+A ++ L P L + + Sbjct: 12 GPQAVLAT-FLLFCRIGACLMVIPGFSSDRIAVRIRLLVAVAATLALAPLLLPVMSEALP 70 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 ++ A + ++ ELF+G + GLL R + L+ G++++ AIG++ + I + A Sbjct: 71 DMSLATTVRFIVAELFVGLLIGLLGRAFMAALETIGTLVAMAIGMSNIPGVAIDGADALP 130 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 PL SL+ + +++ H +VF L SY T+P G ++ + F L TTF++ Sbjct: 131 PLASLMTLTATALIFISGHHWEVFRGLAASYETLPPGGAISLRSGLEQFTEQLATTFVLA 190 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 LR+ SPF+ + +V N +IGL NKL PQIP+YFI+ P++I G FL +++ Sbjct: 191 LRIGSPFIVYSVVVNFAIGLTNKLTPQIPVYFIAMPFVIAGGLYFLFVAV 240 >gi|115523201|ref|YP_780112.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisA53] gi|115517148|gb|ABJ05132.1| type III secretion system inner membrane R protein [Rhodopseudomonas palustris BisA53] Length = 248 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 5/237 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRA 67 ++++FLI CRVG+C+M+ PG S S IPMQVRL A+ +++L P L T+ L Sbjct: 9 VLAVFLIFCRVGTCMMVAPGYSRSNIPMQVRLFLAINVTLMLSPLLVATVRPLVEGAAAP 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNS 126 ++ EL +G V GL RV+ L+ ++I++AIGLNL G ++ P L Sbjct: 69 AIIAIIWSELVVGLVIGLTARVFFAALETMATMIASAIGLNLA---GTTEDTEHVPALVP 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 LI + + ++ D H ++ L+ SY ++ N + V L F + LR++ Sbjct: 126 LITLTATVLFFITDQHWELLRGLISSYRVWVPAVGISGENGLAQLVEHLSQAFTLALRIA 185 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 SPF+ + I+ N++IGL NKL P IP+YFIS P+++ G L L L+ V QFS +F Sbjct: 186 SPFVVYSIIVNLAIGLANKLTPSIPVYFISLPFVLFGGLLLLYLTSREAVLQFSIAF 242 >gi|319405382|emb|CBI79001.1| Flagellar biosynthetic protein fliR [Bartonella sp. AR 15-3] Length = 259 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 123/216 (56%), Gaps = 2/216 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKL 72 L+ RVG+C+ML+PG+S IPM +RL ++FS+ +LP + D+ L + + A + Sbjct: 23 LVFSRVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTDSFKTLGDKPDLALLVRA 82 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + G++ Y LQF S+I +IG + Q S I++S E+ + +++ Sbjct: 83 LFAEMLIGAILGIIAHAYLWALQFMASIIGMSIGFSGQPSHSITESTPESHVANVLVFAT 142 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + D H L+ SY IP+ N + + L F+ L +++PF+ + Sbjct: 143 IILFFASDLHIITIQRLLASYDIIPLAFIPNPEAALTDYHEALSRAFLTTLSIAAPFIIY 202 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 I+ NI+IGLLNKL P IP+YFIS P+++ G LFL Sbjct: 203 AILINITIGLLNKLTPTIPVYFISLPFVM-CGGLFL 237 >gi|304392485|ref|ZP_07374425.1| flagellar biosynthetic protein flir [Ahrensia sp. R2A130] gi|303295115|gb|EFL89475.1| flagellar biosynthetic protein flir [Ahrensia sp. R2A130] Length = 237 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 121/229 (52%), Gaps = 6/229 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVR--LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 CRVG C ++LPGLS IP R L A+A SI + Q + + +L+ Sbjct: 6 CRVGGCFIVLPGLSSGRIPGPARIYLTLAVALSIAF----ARGGEGQAVIYGSGLLRLIF 61 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E +G GL R+ L L F G+ I IG N G+ DS ++ L +LI L+ Sbjct: 62 AESLVGLFIGLAARMMMLALSFAGTSIGMVIGFNNLFGQGVEDSESQAALTTLITFSALV 121 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 L+ +DFHH V +L +SY P G + + +L + F I+L L+ PFL + + Sbjct: 122 LLFQMDFHHAVIASLHRSYEIFPQGAVPEPQMLLVNITRILSSAFFIVLGLAGPFLVYGL 181 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +FN +IG+LNKL PQIPI+F+S P LI G + L++ ++ +F +F Sbjct: 182 IFNTAIGVLNKLTPQIPIFFVSLPVLIMGGLMLAYLALPELLRRFVDAF 230 >gi|114705550|ref|ZP_01438453.1| flagellar biosynthesis protein [Fulvimarina pelagi HTCC2506] gi|114538396|gb|EAU41517.1| flagellar biosynthesis protein [Fulvimarina pelagi HTCC2506] Length = 250 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 8/228 (3%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M+ + + + FL+ CR+G+C+MLLPG S + IP QVRL A A S+ L P L I+ Sbjct: 1 MSEAASAFVFAHFLVFCRIGTCLMLLPGYSSNRIPAQVRLFLAFAISLALSPLLLPLIEP 60 Query: 61 QNF-VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + A +LV E+ G GLL R + + L F G VI+ AIG+ Q DS Sbjct: 61 LVVGASDARRLELVFSEMMTGFFIGLLGRCFLIALSFVGYVIANAIGMGQQLGPVYEDS- 119 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM---LQ 176 + + +LI + + +++ + H ++ ALV SY +P + FG I +S VN+ L+ Sbjct: 120 PDPAIGTLITMTATVLIFITNLHAEIARALVASYTALPAAE--GFG-IQASLVNLTDNLK 176 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 TF++ LR++SPF+ + I+ N +IGL NKL PQIP+YF+S P+++ G Sbjct: 177 LTFVLCLRIASPFVLYAIIVNFAIGLANKLTPQIPVYFVSLPFVLAGG 224 >gi|319409206|emb|CBI82850.1| Flagellar biosynthetic protein fliR [Bartonella schoenbuchensis R1] Length = 261 Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 1/228 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNRAYYSKL 72 L+ RVG+C+ML+PG+S IPM RL A+AFS V+LP + D +L + + A ++ Sbjct: 23 LVFARVGACLMLMPGISSLRIPMNFRLFLAIAFSFVMLPLVVDFFKELGDKPDIAVLTRA 82 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G G++ VY LQF ++I+ ++G + Q + DS+ ET + L + Sbjct: 83 LFSEMLIGASLGVIAHVYLWALQFMATIIAMSMGYSGQPGHSVIDSMPETQIAHLFVLAA 142 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + D H L+ SY + N + ++L F+ L +++PF+ + Sbjct: 143 VMLFFASDLHMVTIRGLLASYDVVSPSFVPNPEAALIDYRDVLSRAFLTTLSIAAPFITY 202 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I+ NI IGL+NKL P IP+YFIS P+++ G L I +++ FS Sbjct: 203 AILINIGIGLVNKLTPTIPVYFISLPFVVAGGVFLLYFLIPELLHFFS 250 >gi|319406958|emb|CBI80595.1| Flagellar biosynthetic protein fliR [Bartonella sp. 1-1C] Length = 261 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 1/231 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKL 72 LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + ++ L + N A + Sbjct: 23 LIFARVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTESFKVLGDKPNLALLVRS 82 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G G++ Y LQF S+I +IG + Q I +S E+ + +++ Sbjct: 83 LFAEMLIGSTFGIIAHAYLWALQFMASIIGMSIGFSGQPGHSIIESTPESHVANVLVFAA 142 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + D H L+ SY +P+ N + + L F+ L +++PF+ + Sbjct: 143 IILFFASDLHIITIQGLLASYDIVPLAFIPNPEAALTDYHEALSRAFLTTLSIAAPFIIY 202 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 I+ NI+IGLLNKL P IP+YFIS P+++ G L + I +++ F+ F Sbjct: 203 AILINITIGLLNKLTPTIPVYFISLPFVMCGGLFLLYILIPELLHLFNSEF 253 >gi|90422632|ref|YP_531002.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisB18] gi|90104646|gb|ABD86683.1| type III secretion system inner membrane R protein [Rhodopseudomonas palustris BisB18] Length = 248 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 8/245 (3%) Query: 3 ISP-EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-- 59 I+P I ++ +FLI CRVG+C+M+ PG S S IP+QVRL A++ +++L P L T+ Sbjct: 2 IAPASISVLVVFLIFCRVGTCMMVAPGYSRSNIPVQVRLFLALSVTLMLSPLLEATVRPA 61 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 L+ A L+ EL +G + GL RV+ L+ + +++AIGLNL G D Sbjct: 62 LEGAAAPAILG-LIWSELVVGLMIGLTARVFFAALETLATFVASAIGLNLA---GTVDDG 117 Query: 120 AETP-LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT 178 P L LI + + ++ + H Q+ L+ SY + G+ + V+ L Sbjct: 118 EHVPALVPLITVSATVLFFMTEQHWQLLRGLLGSYRIWLPATGVGIGDGVAQLVDHLSQA 177 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 F + LR++SPF+ + ++ N++IGL NKL P IP+YFIS P+++ G L L L+ +V Q Sbjct: 178 FTLALRVASPFVIYSVIVNLAIGLANKLTPSIPVYFISLPFVLFGGLLLLYLTGREMVLQ 237 Query: 239 FSHSF 243 FS +F Sbjct: 238 FSIAF 242 >gi|296445188|ref|ZP_06887148.1| type III secretion system inner membrane R protein [Methylosinus trichosporium OB3b] gi|296257362|gb|EFH04429.1| type III secretion system inner membrane R protein [Methylosinus trichosporium OB3b] Length = 251 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 1/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59 MT+ E + +LF++ CR+G CIM +PG S IP+Q RL A+A +I L P L + + Sbjct: 1 MTLGVEALAATLFVLFCRIGGCIMAMPGFSSPRIPVQARLYIAIAITIALAPRLVEVVAP 60 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + + + + L++ EL +G + G L R++ L+ + TA GL + ++ Sbjct: 61 IASSASATGLAVLLVGELLVGVLIGSLARLFFFALETLATAGVTAAGLGNVLGAPMEEAE 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 ++S I + ++++D H ++ + SY IPI N+ S + +L F Sbjct: 121 PLPAMSSFIMLGATALIFLLDLHWEMVRGVFLSYTAIPIRDAFQARNMLSEYTKVLTQAF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ LR+SSP L F ++ N++ G LN++ PQ+P++F+STP LIGLG + L + F Sbjct: 181 LVALRISSPLLLFGLIVNLAFGFLNRMTPQVPVFFVSTPLLIGLGCYWFYLMADDFFAAF 240 Query: 240 SHSF 243 SF Sbjct: 241 ISSF 244 >gi|319898617|ref|YP_004158710.1| flagellar biosynthetic protein FliR [Bartonella clarridgeiae 73] gi|319402581|emb|CBI76126.1| Flagellar biosynthetic protein FliR [Bartonella clarridgeiae 73] Length = 259 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 119/216 (55%), Gaps = 2/216 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFVNRAYYSKL 72 LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + D + + + A + Sbjct: 21 LIFSRVGTCLMLMPGISSVRIPMSLRLFIGISFSLAILPMVTDFFKVFSDKSDLALLIRA 80 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G G++ Y LQF S+I +IG + Q I DS E+ + +++ Sbjct: 81 LFAEMLIGATFGVIAHAYLWALQFMSSIIGMSIGFSGQPGHSIIDSTPESHVANILVFAA 140 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + D H L+ SY +P+ N + + L F+ L +++PF+ + Sbjct: 141 IMLFFASDLHIITIRGLLASYDIVPLAFIPNPEAALTDYREALSRAFLTTLSIAAPFIIY 200 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 I+ NI+IGLLNKL P IP+YFIS P+++ G LFL Sbjct: 201 AILINIAIGLLNKLTPTIPVYFISLPFVM-CGGLFL 235 >gi|319403941|emb|CBI77529.1| Flagellar biosynthetic protein fliR [Bartonella rochalimae ATCC BAA-1498] Length = 261 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 120/216 (55%), Gaps = 2/216 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKL 72 LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + ++ L + N A + Sbjct: 23 LIFARVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTESFKVLGDKPNLALLVRA 82 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G G++ Y LQF S+I +IG + Q I +S E+ + +++ Sbjct: 83 LFAEMLIGSTFGVIAHAYLWALQFMASIIGMSIGFSGQPGHSIIESTPESHVANILVFAA 142 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + D H L+ SY +P+ N + + L F+ L +++PF+ + Sbjct: 143 VILFFASDLHIITIQGLLTSYDIVPLAFIPNPEAALTDYHEALSRAFLTTLSIAAPFIIY 202 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 I+ NI+IGLLNKL P IP+YFIS P+++ G LFL Sbjct: 203 AILINITIGLLNKLTPTIPVYFISLPFVM-CGGLFL 237 >gi|323136993|ref|ZP_08072073.1| type III secretion system inner membrane R protein [Methylocystis sp. ATCC 49242] gi|322397754|gb|EFY00276.1| type III secretion system inner membrane R protein [Methylocystis sp. ATCC 49242] Length = 250 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + F+I CR+G C+M+ PG S +P+++RL A+ ++ L P L DT LQ + Sbjct: 5 ESAIAPTFIIFCRIGGCLMVAPGFSSERVPVRIRLYIAIGVTLALAPALIDT--LQPGLR 62 Query: 66 RAYYSKL---VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 A KL +M EL +G GLL R+Y L L+ + ++ IGL + ++ Sbjct: 63 GADPLKLGAIIMGELTIGVFIGLLARLYFLALETLATAVAMTIGLGNIFGSALIEAEPAP 122 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 L++ + I ++ ++V D H ++ L SY T P+ + + +L ++++ Sbjct: 123 ALSTFVVICAIMLVFVTDQHLEMIRGLYLSYQTTPVFSPAAPESYLNELTRVLTQSYLLA 182 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 LR+SSPFL F ++ N++ G L +L PQ+P+YFIS P++I LG Sbjct: 183 LRISSPFLLFGLIVNLAFGFLARLTPQVPVYFISGPFVIVLG 224 >gi|240137265|ref|YP_002961734.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens AM1] gi|240007231|gb|ACS38457.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens AM1] Length = 256 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 7/240 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + +FLI CR+G C++++PG S +P QVRL A S+ + P L + + +A Sbjct: 15 LGVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAGGVSLAVTPLLLPLFQTK-LLGQAPT 73 Query: 70 SKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + E G + GLL R++ L+ + +ST +G + + A + SL Sbjct: 74 ETLTWIASETVTGLLIGLLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + ++ D H ++F LV SYG IP G+ + + F + LR+++ Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYGRIPPGEGFGTQTALVRIADQIAEAFTLALRIAA 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 PF+ + + N++ G +NKL P IP+YF++TP+++ G+L L ++ +F FL G+ Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFVATPFVM-FGALLLLYTLS---SEFMTQFLSGY 249 >gi|182680488|ref|YP_001834634.1| flagellar biosynthesis protein FliR [Beijerinckia indica subsp. indica ATCC 9039] gi|182636371|gb|ACB97145.1| flagellar biosynthesis protein FliR [Beijerinckia indica subsp. indica ATCC 9039] Length = 251 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 140/249 (56%), Gaps = 7/249 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID- 59 MT SP +++ + ++ CR+G C+MLLPG S IP++VRL A+A ++ L PFL + + Sbjct: 1 MTFSPSHLVLFVTILFCRIGFCVMLLPGFSSPRIPLKVRLALALALTLTLTPFLAEEVRP 60 Query: 60 -LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 L++ + L++ E +G G R++ L+ T + ++ IG+ +++ Sbjct: 61 ALRD-ETPLLLAHLMISESLMGFFIGFSARIFFAALETTANAMAMMIGMTNVLGAPVNEE 119 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT 178 L++L+ + + L+++D H ++ LV SY +P+ N + L Sbjct: 120 EPLPVLSALVTLSATVLLFIMDLHWEILRGLVGSYKAVPVIDHFNARLDLVQVADSLSKA 179 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 F + RL+ PF+ F I+ N+++GL+NK++PQIPIYFI+ P+++ +G LFL + +++ Sbjct: 180 FFLSFRLAGPFIIFSIIVNLAVGLINKMIPQIPIYFITMPFVL-IGGLFLFFATSTQLFE 238 Query: 239 FSHSFLYGF 247 F++GF Sbjct: 239 L---FMFGF 244 >gi|163850131|ref|YP_001638174.1| flagellar biosynthesis protein FliR [Methylobacterium extorquens PA1] gi|218528735|ref|YP_002419551.1| flagellar biosynthesis protein FliR [Methylobacterium chloromethanicum CM4] gi|254559276|ref|YP_003066371.1| flagellar biosynthesis protein FliR [Methylobacterium extorquens DM4] gi|163661736|gb|ABY29103.1| putative flagellar biosynthetic protein [Methylobacterium extorquens PA1] gi|218521038|gb|ACK81623.1| flagellar biosynthesis protein FliR [Methylobacterium chloromethanicum CM4] gi|254266554|emb|CAX22318.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens DM4] Length = 256 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 7/240 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + +FLI CR+G C++++PG S +P QVRL A S+ + P L + +A Sbjct: 15 LGVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAGGVSLAVTPLLLPLFQTK-LSGQAPT 73 Query: 70 SKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + E G + GLL R++ L+ + +ST +G + + A + SL Sbjct: 74 ETLTWIASETVTGLLIGLLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + ++ D H ++F LV SYG IP G+ + + F + LR+++ Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYGRIPPGEGFGTQTALVRIADQIAEAFTLALRIAA 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 PF+ + + N++ G +NKL P IP+YF++TP+++ G+L L ++ +F FL G+ Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFVATPFVM-FGALLLLYTLS---SEFMTQFLSGY 249 >gi|300024562|ref|YP_003757173.1| type III secretion system inner membrane R protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526383|gb|ADJ24852.1| type III secretion system inner membrane R protein [Hyphomicrobium denitrificans ATCC 51888] Length = 254 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 117/220 (53%), Gaps = 1/220 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ CRVG+C M+LPG S IP+Q+RL A+A S+ ++P ++D + ++ Sbjct: 14 IVFCRVGACFMVLPGFSSDRIPVQLRLFVAIAISLAIMPIVYDDVRPVAAGPAEGLVSII 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E G G ++R++ L L+F ++ G S I + TP + + + + Sbjct: 74 VTESLAGLFLGFIVRIFFLALEFAAIAMANLAGYGSAFSHAIEGNDPSTPYSVFVTLPAV 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + +V D H + L SY + +G E S V+ + F + L+LS+ + + Sbjct: 134 VMFFVADLHIAIIRMLHNSYAALKVGSEFAAPPNLSMIVSTFGSAFKLTLQLSAALVVYS 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 ++ N++ G LNK++PQIP YF+STP+++ LG L + L I+ Sbjct: 194 VMVNLAFGFLNKMIPQIPSYFVSTPFVV-LGGLIILLQID 232 >gi|288962717|ref|YP_003453011.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288914983|dbj|BAI76467.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 256 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 128/220 (58%), Gaps = 2/220 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F+++ RV + I LLPG + +PM+VR A+ ++VLLP + D + + ++ Sbjct: 20 FVVLARVAAAIGLLPGFGEAAVPMRVRAALAIIVTLVLLPGV-DGLPDRMPEQPVEMLRI 78 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E +G GL R++ LQ TG++ + +GL+ SM + + L+ ++ I G Sbjct: 79 LAGETLVGAYLGLGARLFMAALQTTGALAAQVVGLSNPFSMAAAGFEGGSVLSGVLLIGG 138 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L L+ D H+ + AL +SYG+ P + + G + F +L TTF + + L++PF+ + Sbjct: 139 LALLFASDVHYLMIGALARSYGSWPAAEFPDLGMVAQRFAELLATTFRLGVGLAAPFILY 198 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG-SLFLCLS 231 +V N+++GL+N+++P +P+YF++TP ++ LG LF+ + Sbjct: 199 GLVMNLALGLVNRVMPAMPVYFVATPGVLMLGLGLFMATA 238 >gi|188579933|ref|YP_001923378.1| flagellar biosynthesis protein FliR [Methylobacterium populi BJ001] gi|179343431|gb|ACB78843.1| putative flagellar biosynthetic protein [Methylobacterium populi BJ001] Length = 256 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 7/240 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +S+FLI CR+G C++++PG S +P QVRL A S+ + P L +A Sbjct: 15 LSVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAAGVSLAVTPLLLPLFQ-GRLPGQAPT 73 Query: 70 SKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV + E G + G L R++ L+ + +ST +G + + A + SL Sbjct: 74 ETLVWIASESITGLLIGFLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + ++ D H ++F LV SY IP G+ + + F + LR+++ Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYARIPPGEGFGTQTALVRIADQIGEAFTLALRIAA 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 PF+ + + N++ G +NKL P IP+YFI+TP+++ G+L L ++ +F FL G+ Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFIATPFVM-FGALILLYTLS---SEFMTQFLSGY 249 >gi|170748117|ref|YP_001754377.1| flagellar biosynthesis protein FliR [Methylobacterium radiotolerans JCM 2831] gi|170654639|gb|ACB23694.1| putative flagellar biosynthetic protein [Methylobacterium radiotolerans JCM 2831] Length = 248 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 12/225 (5%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 +SP+ I+ +F+I CRVG C+++ PGLS + + ++RL A+ ++ + P L L Sbjct: 1 MSPDTIL-GVFVIFCRVGGCLLVAPGLSSARVAPRIRLLVALTVTLAVAPLL-----LPR 54 Query: 63 FVNRAYYSKLVMVELFLGC--VHGLLI----RVYTLGLQFTGSVISTAIGLNLQTSMGIS 116 F + V + ++GC + GL I R + L+ S ++T IGL ++ Sbjct: 55 FGAGLRDAAPVDILWWIGCETLTGLAIGFFGRSFYFALETLASGVATMIGLGGIPGNPVA 114 Query: 117 DSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ 176 D+ A + SLI + + ++ +D H ++F L+ SY IP G + + V+ Sbjct: 115 DTEAASLAGSLIVMAATILVFALDLHWELFRGLIASYDRIPPGHPFGSRLMLAGLVDRTG 174 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 F + LR++SPF+ + ++ N+++GL NKL PQIP++FI+TP+++ Sbjct: 175 AAFAMALRVTSPFIIYSVIVNLALGLANKLTPQIPVFFIATPFIL 219 >gi|312115272|ref|YP_004012868.1| type III secretion system inner membrane R protein [Rhodomicrobium vannielii ATCC 17100] gi|311220401|gb|ADP71769.1| type III secretion system inner membrane R protein [Rhodomicrobium vannielii ATCC 17100] Length = 255 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVNRA 67 ++S+FL++CR+G C+M+LP + + +P++VRL +A S+ + L + ++ + Sbjct: 13 VLSIFLVLCRIGGCLMVLPAIGGARVPVRVRLMVCLAISVAVAFALGNFESARESLSSTP 72 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+VE G V G++IR++ +F S A+GL + + D PL Sbjct: 73 SLVSLVLVETAKGLVIGIMIRLFFASFKFLAVAGSAALGLAMPVNAVEEDGETTPPLAEF 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H +V AL++SY +PIG + S V+ L+ ++ L++ + Sbjct: 133 VSLTAAFLFLATDQHLEVLKALLQSYTVLPIGTGIGLAPSLSGVVDTLRDACLVSLQVVA 192 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL 226 P L F + N+ G+LN++ PQ P YF+S P++IG G L Sbjct: 193 PLLVFAFLVNLLFGVLNRIAPQTPAYFLSMPFVIGGGML 231 >gi|27381961|ref|NP_773490.1| flagellar biosynthesis protein FliR [Bradyrhizobium japonicum USDA 110] gi|27355131|dbj|BAC52115.1| fliR [Bradyrhizobium japonicum USDA 110] Length = 250 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 5/211 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F++ CR+G+C+M +PG S +P QVRL A+ + L P L L+ ++A L Sbjct: 13 FIVFCRIGACLMFVPGYSSVNVPAQVRLFIALVTTFALTPILIAV--LKPLTDQAAPLTL 70 Query: 73 VMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ +G V GL RV+ L LQ +V+++AIGL+ I D+ L LI Sbjct: 71 ALLIGSEVLVGSVIGLGGRVFFLALQTMATVMASAIGLSNIPGTPIGDTDPAPALVPLIM 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ D H QV L+ SY G L V+ L F++ LR++SPF Sbjct: 131 ASVTTLFFMTDQHWQVLRGLMNSYDVWHPGARLGGSMALDQLVSRLSEAFVLTLRIASPF 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 + + ++ N+++GL+NKL P IP+YFIS P++ Sbjct: 191 IVYSVIVNLAVGLINKLTPAIPVYFISVPFV 221 >gi|197104397|ref|YP_002129774.1| flagellar biosynthesis protein FliR [Phenylobacterium zucineum HLK1] gi|196477817|gb|ACG77345.1| flagellar biosynthesis protein FliR [Phenylobacterium zucineum HLK1] Length = 253 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+G+ IML+PGL ++IP ++RL FA+A +++L P L T A + V Sbjct: 15 LVFARLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAPPIPASAGALAGE-V 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + EL +G + G ++R++ L L G ++S L+ + + L++ +G++G+ Sbjct: 74 IRELLIGLMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTFLGMLGI 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + D HH ALV+SY P G+E+ G+ + F + L+L++P + Sbjct: 134 VLILTTDLHHMFLAALVRSYAIFPFGREVPVGDAGQLAIQTTSRAFALGLQLAAPVVVLS 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ N+++GL+ +++P ++FI++P L+ LG +S+ +I Sbjct: 194 LIVNVAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVI 235 >gi|170744552|ref|YP_001773207.1| flagellar biosynthesis protein FliR [Methylobacterium sp. 4-46] gi|168198826|gb|ACA20773.1| putative flagellar biosynthetic protein [Methylobacterium sp. 4-46] Length = 256 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 7/238 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAM----AFSIVLLPFLWDTIDLQNFVN 65 + +FL+ CR+G C++++PG+S + IP+QVRL A+ A S ++LP + Q Sbjct: 15 LGIFLMFCRIGGCLLVVPGVSSARIPVQVRLFLALSVTFALSPLILPLFRGRLAAQE--- 71 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A ++ E G + GLL RV+ L+ + ++ A+G + + + L Sbjct: 72 PAVTFLWILSESLTGFLIGLLGRVFLFVLETVMTAVTMAVGFGTIPGTPMEGNEPQGALV 131 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 SL+ + L+ H ++F LV SY +P G+ L V+ + + F++ LR+ Sbjct: 132 SLVMVAATALLFSAGLHWELFRGLVDSYARLPPGEGLGSQAALVQIVDQITSVFVLGLRI 191 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +SPF+ + IV N+++G NKL P IP+YFI+TP+++ G L L L ++ QF S+ Sbjct: 192 TSPFIVYSIVVNLAVGFANKLTPTIPVYFIATPFVMVGGILMLYLISGEVLMQFLGSY 249 >gi|217976248|ref|YP_002360395.1| type III secretion system inner membrane R protein [Methylocella silvestris BL2] gi|217501624|gb|ACK49033.1| type III secretion system inner membrane R protein [Methylocella silvestris BL2] Length = 249 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 131/240 (54%), Gaps = 11/240 (4%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ F++ CR+G+C+M++PG+S + IP++VRL A ++ L P L D + + + Sbjct: 7 VLTAFVLFCRIGACLMIMPGISSARIPVRVRLFVGFAITLGLTPILSDEVGPKISAESPF 66 Query: 69 -YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ E +G + G L R++ L + I+ AIGL+ + D+ + SL Sbjct: 67 ILVQTILSESLIGGLIGFLGRIFFGALDALANAIAMAIGLSSPLAPPTDDNEPAPAIVSL 126 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRL 185 I + L+ ++ + H +V L+ SY P+ E G + N L +F + LR+ Sbjct: 127 ISLGALVLFFLTNLHWEVLRGLLASYSVWPVSGLFEARLGLV--EIGNSLARSFALALRV 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL----CLS-IEIIVYQFS 240 SSPF+ + ++ N++IG+ ++ PQIPIYFI+ P + G LFL C S +E+ V FS Sbjct: 185 SSPFIVYALIVNLAIGIASRFAPQIPIYFITVPA-VAAGGLFLLYITCRSLLELFVAGFS 243 >gi|162138518|ref|YP_487378.2| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris HaA2] Length = 255 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 5/216 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAY 68 + L+ RVG+ +MLLP L S IP +++L A+ ++++LP + +D+ + Sbjct: 14 AFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQVDMSSLTPLLV 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G V G RV LQ GSVI+ +GL T++ + + + + Sbjct: 74 ---LMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+G+ L+ D HH V AL SY G+ LN G++ + +F I ++L++P Sbjct: 131 TILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAASFKIGMQLAAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 FL F +VFNI +G+L +L+PQ+ +YF+ P I +G Sbjct: 191 FLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIG 226 >gi|75675329|ref|YP_317750.1| flagellar biosynthesis protein FliR [Nitrobacter winogradskyi Nb-255] gi|74420199|gb|ABA04398.1| Flagellar biosynthesis protein FliR [Nitrobacter winogradskyi Nb-255] Length = 256 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 5/210 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAY 68 + L+ RVG+ +MLLPG YIP++V+L A+ + ++LP +D+Q+ A Sbjct: 14 AFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAAYHVDMQSV---AP 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E+ +G V G RV L GSVI+ +GL TS+ + + + + Sbjct: 71 LAVLLVHEIIIGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQGQQGALMGNFL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+P Sbjct: 131 TLLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGAFKIGLQLSAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 FL F +VFNI +G+L +L+PQ+ +YF+ P Sbjct: 191 FLVFGLVFNIGLGVLARLMPQMQVYFVGVP 220 >gi|86573910|gb|ABD08467.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris HaA2] Length = 283 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 5/216 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAY 68 + L+ RVG+ +MLLP L S IP +++L A+ ++++LP + +D+ + Sbjct: 42 AFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQVDMSSLTPLLV 101 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G V G RV LQ GSVI+ +GL T++ + + + + Sbjct: 102 ---LMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFL 158 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+G+ L+ D HH V AL SY G+ LN G++ + +F I ++L++P Sbjct: 159 TILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAASFKIGMQLAAP 218 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 FL F +VFNI +G+L +L+PQ+ +YF+ P I +G Sbjct: 219 FLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIG 254 >gi|148256776|ref|YP_001241361.1| flagellar biosynthesis protein FliR [Bradyrhizobium sp. BTAi1] gi|146408949|gb|ABQ37455.1| Flagellar biosynthetic protein fliR [Bradyrhizobium sp. BTAi1] Length = 255 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 9/227 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAYYSKLVM 74 R+G+ +MLLPGL IP++++L A+ ++++LP +DLQ A LVM Sbjct: 20 ARIGAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLHRQAYQVDLQ-----ALSPLLVM 74 Query: 75 V--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G V G RV LQ GSVI+ +GL T++ + + + + ++G Sbjct: 75 MVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFLTMLG 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + L+ D HH V AL SY G+ + G++ S F I L+LS+PFL F Sbjct: 135 VTLLFSTDSHHLVIAALSDSYKIFAPGEVIPSGDVASLATRAFAAAFKIGLQLSAPFLVF 194 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 +VFNI +G+L +L+PQ+ +YF+ P I +G L L + ++ F Sbjct: 195 GLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFGLVLAAMMGTF 241 >gi|91976175|ref|YP_568834.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisB5] gi|91682631|gb|ABE38933.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris BisB5] Length = 255 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 9/237 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAY 68 + L+ R+G+ +ML P L S IP++++L A+ ++++LP +D+ + Sbjct: 14 AFMLVFARIGAMVMLFPTLGESNIPVRIKLSIALGLTLIILPLHRSAYQVDMSSLT---- 69 Query: 69 YSKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 LVM+ E+ +G V G RV LQ GSVI+ +GL T++ + + + Sbjct: 70 -PLLVMMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGN 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+G+ L+ D HH V AL SY G+ L+ G++ + +F I ++L+ Sbjct: 129 FLTILGVTMLFATDSHHLVIQALSDSYKIFAPGELLSSGDVAALATKAFAASFKIGMQLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +PFL F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + ++ F + F Sbjct: 189 APFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIAIGFIILAAVLTTMMSTFLNYF 245 >gi|316932837|ref|YP_004107819.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris DX-1] gi|315600551|gb|ADU43086.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris DX-1] Length = 268 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAYYSK 71 L+ R+G+ +ML+P L S IP +++L A+ ++++LP ID+ + Sbjct: 30 LVFARIGAMVMLMPALGESNIPTRIKLSIALLLTMIMLPLHRSAYQIDMSSLTPLLV--- 86 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G V G RV LQ G+VI+ +GL +++ + + + + ++ Sbjct: 87 LMVQEIAIGIVLGATARVTLSALQVAGAVIAQQLGLGFVSAVDPTQGQQGVLVGNFLTLL 146 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G+ L+ D HH V AL SY G+ LN G++ + F + L+L++PFL Sbjct: 147 GVTMLFATDMHHLVIQALSDSYKVFAPGELLNTGDVAALATQAFAAAFKLGLQLAAPFLV 206 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + + ++ F Sbjct: 207 FGLVFNIGLGVLARLMPQMQVYFVGVPLSIVIGFIVLAVVLTTMMGAF 254 >gi|83594154|ref|YP_427906.1| flagellar biosynthesis protein FliR [Rhodospirillum rubrum ATCC 11170] gi|83577068|gb|ABC23619.1| Flagellar biosynthesis protein FliR [Rhodospirillum rubrum ATCC 11170] Length = 253 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 127/233 (54%), Gaps = 1/233 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+G+ +++LPGLS +Y+ + +R+ A+ ++V LP + + N A+ L+ Sbjct: 15 LVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALPPAP-DNTAFLVLLI 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 VE +G G++ + + + F G+++ + GL + + + + + +G + + Sbjct: 74 AVEATIGVFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQSALIAGFLGEVAM 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + ++V HH + A+V SY P GQ + G++ V +L + F + L+L++PF+ + Sbjct: 134 VMVFVTGMHHLMIEAVVNSYDAFPPGQMPDTGDMVQLLVTILSSGFRLGLQLAAPFIIYA 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 I+FN ++G++ +L+PQ+ + F++ P I G L ++ ++Y F F G Sbjct: 194 IIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFLGHFERG 246 >gi|115523574|ref|YP_780485.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisA53] gi|115517521|gb|ABJ05505.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris BisA53] Length = 256 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 1/211 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ +ML+PG S IP +++L A+ ++++LP + + + A L++ E+ Sbjct: 21 RIGTMVMLMPGFGESNIPARIKLSIALGLTLIILPLHRSAYQV-DMTSMAPLIVLMLHEI 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G +RV LQ GSVI+ +GL T++ + + + + ++GL L+ Sbjct: 80 VIGIVLGATVRVTLAALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLTLLGLTLLF 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 D HH V AL +SY G+ L G+I + F I ++L++PFL F +VFN Sbjct: 140 ATDSHHLVIAALNESYRVFSPGELLPSGDIAALATRAFSAAFKIGMQLAAPFLVFGLVFN 199 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 I +G+L +L+PQ+ +YF+ P I +G L L Sbjct: 200 IGLGVLARLMPQMQVYFVGVPLSIVVGFLIL 230 >gi|260564095|ref|ZP_05834580.1| LOW QUALITY PROTEIN: flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. 16M] gi|260151738|gb|EEW86831.1| LOW QUALITY PROTEIN: flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. 16M] Length = 221 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 99/172 (57%) Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L +++ Sbjct: 41 RLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLATIVTF 100 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L +V D H ++F AL+ SY IP+ F + L F+ LR+++PF+ Sbjct: 101 SALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRIAAPFI 160 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 161 VFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 212 >gi|254502657|ref|ZP_05114808.1| flagellar biosynthetic protein FliR [Labrenzia alexandrii DFL-11] gi|222438728|gb|EEE45407.1| flagellar biosynthetic protein FliR [Labrenzia alexandrii DFL-11] Length = 257 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 1/218 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+G+ IMLLP L S IP + RL A+A ++VL P N A Sbjct: 11 VAAAFMLMFARLGTMIMLLPALGESSIPTRFRLTIALAMTLVLYPVGSQLYPADLVSNPA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NS 126 L++ E+ +G GL ++ T +Q G +++ GL IS+ + L + Sbjct: 71 QLGVLLISEIVIGVAIGLCAKLVTSAVQIAGVIMANQSGLAFALGTDISNEGQQGALYGN 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++G+ ++ D H+ V AL S+ P G G+ +F + F I +R+S Sbjct: 131 FLALVGITLIFTTDTHYLVIAALHDSFTLFPPGSMPPVGDFSENFAETVAMVFSIAVRMS 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +PFL +VF +GLLNKL+PQ+ I+FI+ P I +G Sbjct: 191 APFLVVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIG 228 >gi|256042857|ref|ZP_05445803.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. Rev.1] gi|265989293|ref|ZP_06101850.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. Rev.1] gi|262999962|gb|EEZ12652.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. Rev.1] Length = 203 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 99/172 (57%) Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L +++ Sbjct: 23 RLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLATIVTF 82 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L +V D H ++F AL+ SY IP+ F + L F+ LR+++PF+ Sbjct: 83 SALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRIAAPFI 142 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 143 VFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 194 >gi|146341891|ref|YP_001206939.1| flagellar biosynthesis protein FliR [Bradyrhizobium sp. ORS278] gi|146194697|emb|CAL78722.1| Flagellar biosynthetic protein fliR [Bradyrhizobium sp. ORS278] Length = 255 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 11/219 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAYYSKLVM 74 R+ + +MLLPGL IP++++L A+ ++++LP +DLQ S LV+ Sbjct: 20 ARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQAYQVDLQAL------SPLVV 73 Query: 75 V---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E+ +G V G RV LQ GSVI+ +GL T++ + + + + ++ Sbjct: 74 MMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFLTML 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G+ L+ D HH V AL SY G+ + G++ S F I L+LS+PFL Sbjct: 134 GVTLLFATDSHHLVIAALSDSYKIFAPGELVPSGDVASLATKAFAAAFKIGLQLSAPFLV 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 F +VFNI +G+L +L+PQ+ +YF+ P I +G L L Sbjct: 194 FGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFAL 232 >gi|306841284|ref|ZP_07473995.1| flagellar biosynthesis protein FliR [Brucella sp. BO2] gi|306288686|gb|EFM60017.1| flagellar biosynthesis protein FliR [Brucella sp. BO2] Length = 203 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 98/172 (56%) Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +L+ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L +++ Sbjct: 23 RLMAGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLATIVTF 82 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L +V D H ++F AL+ SY IP+ F + L F+ LR+++PF+ Sbjct: 83 SALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRIAAPFI 142 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 143 VFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 194 >gi|307945651|ref|ZP_07660987.1| flagellar biosynthetic protein FliR [Roseibium sp. TrichSKD4] gi|307771524|gb|EFO30749.1| flagellar biosynthetic protein FliR [Roseibium sp. TrichSKD4] Length = 257 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 2/221 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 P+I + L L+ R+G+ IML+P L + IP ++RL A+ ++VL P + + Sbjct: 9 PQITAIFL-LMFARIGTLIMLMPALGETSIPTRIRLTIALGITLVLYPVISGSYPAGLTD 67 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 N A + E+ +G GL IR++T LQ G +++ GL +++ + L Sbjct: 68 NPARLLVFMGGEMIIGFAVGLCIRLFTTTLQTAGVIMANQSGLAFAFGADLANGGQQGTL 127 Query: 125 -NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + + ++G+ ++ D H+ V AL S+ P G+ + G+ ++ N + F I L Sbjct: 128 FGNYLSMVGIAMVFATDSHYLVIAALHDSFTLFPPGELVPVGDFVTNATNTVAEVFSIAL 187 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 R+S+PF+ +VF +GLLNKL+PQ+ I+FI+ P I +G Sbjct: 188 RMSAPFIVMGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIG 228 >gi|90423032|ref|YP_531402.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisB18] gi|90105046|gb|ABD87083.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris BisB18] Length = 256 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 7/211 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + +ML+PG + IP++++L A+ ++V+LP D Q V+ + Sbjct: 14 AFMLVFARIAAMVMLMPGFGETNIPVRIKLAIALVLTLVILPLHRS--DYQ--VDMTSLT 69 Query: 71 KLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+++ E+ +G V G RV LQ GSVI+ +GL TS+ + + + Sbjct: 70 PLIVLMLHEIVIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTSVDPTQGQQGAVIGNF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++GL L+ D HH V AL +SY G+ ++ G++ S F I ++LS+ Sbjct: 130 LTLLGLTLLFATDTHHLVIAALNESYRIFSPGEFMSSGDVASLATRAFAAAFKIGMQLSA 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 PFL F +VFNI +G+L +L+PQ+ +YF+ P Sbjct: 190 PFLVFGLVFNIGLGVLARLMPQMQVYFVGVP 220 >gi|170743255|ref|YP_001771910.1| flagellar biosynthetic protein FliR [Methylobacterium sp. 4-46] gi|168197529|gb|ACA19476.1| flagellar biosynthetic protein FliR [Methylobacterium sp. 4-46] Length = 252 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 124/228 (54%), Gaps = 3/228 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 RVG+ +ML+PG+ + + ++RL FA+ ++VL PF+ + Q A L+ E Sbjct: 17 ARVGTLVMLMPGIGETVVAPRLRLAFALLVALVLFPFVRPLLPQQAGTGPALIGVLIG-E 75 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G V GL +R LQ TG++++ +GL ++ + S + L S + ++G+ + Sbjct: 76 IAVGLVLGLSVRAVLAALQTTGTIVAQQLGLAYAMTVDPTTSGQQATLGSFLTMLGITLV 135 Query: 137 WVIDFHHQVFYALVKSYGTIP-IGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D HH + SY +P IG G+ + + + F + +++++PF+ F I+ Sbjct: 136 LAADLHHLAIAGIRDSYALMPPIGVPAT-GDAAAFAIRAVARGFALAVQIAAPFIAFGIL 194 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 FN+ +G+L++L+PQ+ ++F++TP I +G L S+ +++ F Sbjct: 195 FNLGLGVLSRLMPQMQVFFVATPASILIGMAVLLASLGVVMGVFVEDL 242 >gi|170748649|ref|YP_001754909.1| flagellar biosynthetic protein FliR [Methylobacterium radiotolerans JCM 2831] gi|170655171|gb|ACB24226.1| flagellar biosynthetic protein FliR [Methylobacterium radiotolerans JCM 2831] Length = 253 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+G+ IML+PG+ + ++RL FA+ ++VL P + + V L+ E Sbjct: 17 ARIGTLIMLMPGIGEQTVSPRLRLAFALLTALVLFPTVRPLLGGTEGVAGPRLIGLLFGE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G V GL +R+ LQ G +IS +GL+ ++ S + + + + ++G+ + Sbjct: 77 TIIGLVLGLTVRMILAALQTAGVIISAQVGLSYAMTVDPSQGGQQVAIGNFLSLLGITLI 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 + D HH + +SY +P +F + L F + +++S PF+ F I+F Sbjct: 137 FAADLHHLAIEGVARSYEVLPPDGVPSFSDALMLATKALARGFTLAVQISGPFIAFGILF 196 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFL--CLSIEIIVY 237 N+ +G+L++L+PQ+ ++F++ P + +G L L CL + + V+ Sbjct: 197 NLGLGVLSRLMPQMQVFFLAVPASVLIGMLLLMGCLGVMMGVF 239 >gi|167645348|ref|YP_001683011.1| flagellar biosynthesis protein FliR [Caulobacter sp. K31] gi|167347778|gb|ABZ70513.1| flagellar biosynthetic protein FliR [Caulobacter sp. K31] Length = 251 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 116/205 (56%), Gaps = 1/205 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+G+ +ML+PG+ + +P ++RL FA+ +I+L P + +I + + V Sbjct: 15 LVFARIGAMVMLMPGVGEAVVPPRIRLSFAVLMAILLAPLVSSSITTVPS-SVGAVAGAV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G++++++ L G +IS L+ + + + + T + + + ++GL Sbjct: 74 IHEVLIGLMIGMVLKLFVSSLTTAGEIISIQTTLSFAQTANPAGAPSSTAVATFLSMLGL 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + V D HH A+VKSY P + + + + V + +F + ++L++P L F Sbjct: 134 VLIMVTDLHHLFIGAMVKSYDIFPFSRAIPVNDAATLAVRTVADSFKLGVQLAAPVLVFS 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTP 218 IVFN++ GL+ +++P I+F+++P Sbjct: 194 IVFNLATGLVGRVMPSFQIFFVTSP 218 >gi|144900465|emb|CAM77329.1| Type III secretion system inner membrane R protein [Magnetospirillum gryphiswaldense MSR-1] Length = 254 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 9/238 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSK 71 FLI R+G+ +M++PGL S +P +VRL FA+A S+VLLP L + L N ++ ++ Sbjct: 14 FLIFTRIGAALMIVPGLGGSLVPTRVRLIFALAMSLVLLPVLGGGLPPLPNRLSNLFF-- 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI- 130 L+ E +G G+L + L G+ I +GL S D++AE ++L Sbjct: 72 LIGSEAMIGVYLGILTQTLMSTLHVAGTFIGFQVGLTNAFSY---DAVAEQQSSTLTAFF 128 Query: 131 --IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L+A++V + HH + A+ SY + GQ L G+ + +L +F L+L++P Sbjct: 129 TNTALIAIFVTNLHHLMIEAIAGSYAVMVPGQPLPLGDFAETLSKLLSASFNFALQLAAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 L F I++N+++GL+++L PQI ++FI+ P + G + +++ +I+ F F G Sbjct: 189 LLAFGIIYNVALGLMSRLSPQIQVFFIALPLQVMAGLWMMMVALPLIIILFLRWFQDG 246 >gi|220925377|ref|YP_002500679.1| flagellar biosynthetic protein FliR [Methylobacterium nodulans ORS 2060] gi|219949984|gb|ACL60376.1| flagellar biosynthetic protein FliR [Methylobacterium nodulans ORS 2060] Length = 254 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 124/232 (53%), Gaps = 5/232 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L RVG+ IML+PG+ + + ++RL FA+ ++VL P + + + Sbjct: 11 SYLLTFARVGTLIMLMPGIGEAVVSPRLRLAFALLVALVLFPAVRPLLPQPD--GAGAGP 68 Query: 71 KLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +L+ V E+ +G V GL +R LQ TG++I+ +GL ++ + + + L + Sbjct: 69 RLIGVLIGEVAVGLVLGLSVRAVLAALQTTGTIIAQQLGLAYAMTVDPTAAGQQATLGTF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++G+ + D HH + SY +P G+ + + F + +++S+ Sbjct: 129 LTLLGITLVLAADLHHLAIAGIRDSYALMPPVGVPATGDAADLVIRAVARGFALAVQISA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 PF+ F I+FN+ +G+L++L+PQ+ ++F++TP I +G + L +I +++ F Sbjct: 189 PFIAFGILFNLGLGVLSRLMPQMQVFFVATPASILIGMMVLLATIGVVMGVF 240 >gi|23016624|ref|ZP_00056378.1| COG1684: Flagellar biosynthesis pathway, component FliR [Magnetospirillum magnetotacticum MS-1] Length = 254 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 5/236 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ R+G+ +ML PGL S + ++RL A+A + V++P + V ++ L Sbjct: 14 FLVFTRIGAALMLFPGLGGSLVSTRIRLLLALAVAFVIMPVVAPVFPA---VPKSVGGML 70 Query: 73 VMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + V E +G G ++ L GS+I GL S L + Sbjct: 71 LSVFGEAVVGAYIGTVVMFIMSTLNMAGSMIGYQTGLTNAFSFDPISQQQSQLLTGFLSN 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 IGL+A++ D HH +F A +SY P GQ L FG+ + ++ TF + + ++P + Sbjct: 131 IGLVAVFATDLHHLMFQAAYESYALFPPGQPLQFGDYAETLGHLATDTFKVGTQFAAPLV 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 F +VF +GLL++LVPQ+ ++F++ P + +G ++I +++ F F G Sbjct: 191 VFGLVFYTGLGLLSRLVPQLQVFFVAMPVQVMVGMWLFMVTIPLVISLFLRFFESG 246 >gi|83309717|ref|YP_419981.1| flagellar biosynthesis protein FliR [Magnetospirillum magneticum AMB-1] gi|82944558|dbj|BAE49422.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1] Length = 254 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 11/239 (4%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ R+G+ +ML PGL S + ++RL A++ + V+LP + + V R+ L Sbjct: 14 FLVFTRIGAALMLFPGLGGSLVSTRIRLLLALSVAFVMLPVVGASFPA---VPRSVGGML 70 Query: 73 VMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + V E +G G +I L GS+I GL S D +A+ L G Sbjct: 71 LAVFGEAVVGVYLGTVIMFIMSTLNMAGSMIGYQTGLTNAFSF---DPIAQQQSQLLTGF 127 Query: 131 ---IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 IGL+A++ D HH +F A+ +SY P GQ L FG+ + ++ TF + + ++ Sbjct: 128 LANIGLVAVFATDMHHLMFQAVFESYYLFPPGQPLQFGDYAETLGHLATDTFKVGTQFAA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + F +VF +GLL++LVPQ+ ++F+ P + +G +++ +++ F F G Sbjct: 188 PLVVFGLVFYTGLGLLSRLVPQLQVFFVGMPVQVMVGMWLFMVTMPLVISLFLRFFESG 246 >gi|329849683|ref|ZP_08264529.1| flagellar biosynthetic protein FliR [Asticcacaulis biprosthecum C19] gi|328841594|gb|EGF91164.1| flagellar biosynthetic protein FliR [Asticcacaulis biprosthecum C19] Length = 273 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 126/238 (52%), Gaps = 5/238 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKL 72 LI+ R+ S IML+PGL +P ++R+ A+ ++V+ P + +T+ L N + + Sbjct: 33 LILLRLASMIMLMPGLGDQAVPARLRIGLALMLALVITPIVGNTLPPLPNSLGDML--GI 90 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + G L+RV L G ++S L+ + + + T L + + ++G Sbjct: 91 ALHEIIIGLMIGTLMRVLIFALVIAGEIMSLQTTLSFAQTANPAQAQPSTSLGTFLAMLG 150 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ ++ + HH A+V SY +++ G+ + + + TF++ L++S+P + F Sbjct: 151 MVLIYATNLHHLFIRAMVDSYQVFAPTRDVMVGDATTLMLQTVTKTFLLALQMSAPLIAF 210 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 ++FNI+ G + +++P P++F +TP L GL + L L +V+ + L +F Sbjct: 211 ALIFNIATGFIGRMMPNFPVFFAATPVSVLAGLSIMALGLGATGMVFIEHYEELLAYF 268 >gi|299131772|ref|ZP_07024967.1| flagellar biosynthetic protein FliR [Afipia sp. 1NLS2] gi|298591909|gb|EFI52109.1| flagellar biosynthetic protein FliR [Afipia sp. 1NLS2] Length = 259 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 111/207 (53%), Gaps = 5/207 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAYYSK 71 L+ R+G+ +MLLPG + +P+++RL A+ ++++LP +DL + + Sbjct: 17 LVFARIGAMMMLLPGFGEANVPVRLRLGIALMLTLIMLPLHRAAYHVDLSSMTS---VMV 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G V G R L GS+I+ +GL T++ + + + + I+ Sbjct: 74 LMVHEIIVGVVLGATARFTLAALSVAGSIIAQQVGLGFVTAVDPTQDQQSVIVANFLTIL 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G+ ++ D H+ V AL SY G+ + G++ + F I ++LS+PF+ Sbjct: 134 GIALIFATDTHYLVLAALSDSYTLFSPGELMPSGDVAALATKAFTVAFKIGVQLSAPFII 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTP 218 F +VFN+ +G+L +++PQ+ +YF+ P Sbjct: 194 FGLVFNLGLGMLARMMPQMQVYFVGVP 220 >gi|254292631|ref|YP_003058654.1| flagellar biosynthetic protein FliR [Hirschia baltica ATCC 49814] gi|254041162|gb|ACT57957.1| flagellar biosynthetic protein FliR [Hirschia baltica ATCC 49814] Length = 247 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 111/212 (52%), Gaps = 3/212 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKL 72 L+ CR+GS +ML PG S +P Q RL A+ ++ L+P L D + + V+++ L Sbjct: 9 LLFCRIGSVLMLAPGWGESSVPAQFRLSAALLATMALVPNLIDQMPPVPELVSQSAL--L 66 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E+ +G + G R+ LQ G +I + GL + T + + + + + Sbjct: 67 IISEILIGIMMGAGARILMSALQVGGQIIGISSGLAMATQFDPTIGSSSAIIGVFMSMTA 126 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + + H + A V SY G+ L G+ + + + F + L++++P L Sbjct: 127 IVLIMIAGIHRDMLQAAVDSYQLFKPGEPLPIGDAAQWELGAMSSAFKLGLQIAAPILVV 186 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +VFN+SIGL+ +L+PQ+ ++FI+ P + LG Sbjct: 187 ALVFNLSIGLVARLIPQVQVFFIAMPIQVMLG 218 >gi|85716546|ref|ZP_01047516.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] gi|85696547|gb|EAQ34435.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] Length = 256 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 114/210 (54%), Gaps = 5/210 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAY 68 + L+ R+G+ +MLLPG +IP++V+L A+ ++++LP +D Q+ A Sbjct: 14 AFMLVFARIGAMVMLLPGFGEGFIPVRVKLAIALLLTLIILPLHRTAYHVDTQSI---AP 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E+ +G V G RV L GS+I+ +GL TS+ + + + + Sbjct: 71 LTVLLVHEIIIGVVLGATARVTLAALHVAGSIIAQQLGLGFVTSVDPTQGQQGALMGNFL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+P Sbjct: 131 TLLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGAFKIGLQLSAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 FL F +VFNI +G+L +L+PQ+ +YF+ P Sbjct: 191 FLVFGLVFNIGLGVLARLMPQMQVYFVGVP 220 >gi|92116949|ref|YP_576678.1| flagellar biosynthesis protein FliR [Nitrobacter hamburgensis X14] gi|91799843|gb|ABE62218.1| flagellar biosynthetic protein FliR [Nitrobacter hamburgensis X14] Length = 256 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAY 68 + L+ R+G+ +MLLPG +IP++V+L A+ ++++LP +D+Q+ A Sbjct: 14 AFMLVFARIGAMVMLLPGFGEVFIPVRVKLAIALLLTLIILPLHRSAYHVDMQSV---AP 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E+ +G V G RV L GSVI+ +GL TS+ + + + + Sbjct: 71 LAVLMVHEIIIGVVLGATARVTLAALSVAGSVIAQQLGLGFVTSIDPTQGQQGALMGNFL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+P Sbjct: 131 TLLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAAAFKIGLQLSAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 FL F +VFNI +G+L +L+PQ+ +YF+ P I +G + L Sbjct: 191 FLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFVILA 231 >gi|27380921|ref|NP_772450.1| flagellar biosynthesis protein FliR [Bradyrhizobium japonicum USDA 110] gi|27354087|dbj|BAC51075.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 256 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 5/231 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAY 68 + L+ RVG+ +MLLPGL + IP +V+L A+ ++++LP +D+ + A Sbjct: 14 AFMLVFARVGAMVMLLPGLGETNIPTRVKLSIALLLTLIILPLHRSAYHVDMGSL---AP 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G V G RV LQ GSVI+ +GL TS+ + + + + Sbjct: 71 LLVLMLHEIAIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTSVDPTQGQQGVLVGNFL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G+ L+ D HH V AL SY G+ ++ G++ S F + L+LS P Sbjct: 131 TMLGVTLLFATDSHHLVIAALNDSYAIFSPGETVSSGDVASLATRAFAAAFRLGLQLSGP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 FL F +VFNI +G+L +L+PQ+ +YF+ P I G L L + + ++ F Sbjct: 191 FLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFAGFLVLAVVLTAMMGTF 241 >gi|315498432|ref|YP_004087236.1| flagellar biosynthetic protein flir [Asticcacaulis excentricus CB 48] gi|315416444|gb|ADU13085.1| flagellar biosynthetic protein FliR [Asticcacaulis excentricus CB 48] Length = 268 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 115/225 (51%), Gaps = 1/225 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + +I RVGS +L+PGL +P ++RL FA F+++L+P + + Sbjct: 23 VVFTAMMIFVRVGSVAILIPGLGDQAVPPRMRLSFAFVFTLMLVPVVQSQMPALP-PKLG 81 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ E +G + G+L+R + L G V+S L+ + + + T + + Sbjct: 82 AMAGLIIHEAVIGLMLGMLMRTFLGALAIAGEVVSLQTTLSFAQTANPAQAQPSTSIGTF 141 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++GL+ ++ + HH + SY P + + G+ + + TFM+ +++++ Sbjct: 142 LAMLGLVLIYATNLHHLFIAGMRDSYWVFPPMRPVMVGDATQLMIRTVGDTFMLAIQMTT 201 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 P L F ++ N++ G + +++P PI+F TP + LG LS+ Sbjct: 202 PILVFGLIINVAAGFIGRIMPAFPIFFAVTPVSVLLGLAIFALSL 246 >gi|218515804|ref|ZP_03512644.1| flagellar biosynthesis protein FliR [Rhizobium etli 8C-3] Length = 161 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI L+P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIALMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G T G +D + Sbjct: 61 AVHTGAGTYIGLIFSESLVGLMYGMLARIYTLGMQFAATIIAMMVGY---TQPGSADVIE 117 Query: 121 ETPLN 125 + P N Sbjct: 118 DAPEN 122 >gi|254470011|ref|ZP_05083415.1| flagellar biosynthetic protein FliR [Pseudovibrio sp. JE062] gi|211960322|gb|EEA95518.1| flagellar biosynthetic protein FliR [Pseudovibrio sp. JE062] Length = 257 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 3/228 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +I++S L+ R+G+ IML+P ++IP++VRL A+ + V LP + + Sbjct: 10 VIVVSFLLMFARIGTMIMLVPAFGETFIPVRVRLTIALLLTYVFLPINSNLYPDDVMSSL 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-N 125 L+ EL +G GL +++ + L G++++ GL ++S + L Sbjct: 70 PKLLALLGGELMVGFFIGLSMKLISYALSVAGTIMANQSGLAFAMGGDATNSGQQGALMG 129 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + ++G+ ++V + H+ + A+ S+ P G L G++ + V + F + +RL Sbjct: 130 NFLNVLGICMVFVTNLHYVMIAAMQDSFVLFPPGNPLPVGDLSTLAVETVTHMFSVAVRL 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLS 231 +PF+ IVF S+GLLNKL+PQ+ I+FI+ P +IG G L LS Sbjct: 190 GAPFIVVGIVFYFSLGLLNKLMPQMQIFFIAMPVNIMIGFGIFLLLLS 237 >gi|16125328|ref|NP_419892.1| flagellar biosynthesis protein FliR [Caulobacter crescentus CB15] gi|221234067|ref|YP_002516503.1| flagellar biosynthesis protein FliR [Caulobacter crescentus NA1000] gi|3023777|sp|Q45975|FLIR_CAUCR RecName: Full=Flagellar biosynthetic protein fliR gi|535424|gb|AAA66207.1| FliR [Caulobacter crescentus CB15] gi|13422378|gb|AAK23060.1| flagellar biosynthesis protein FliR [Caulobacter crescentus CB15] gi|220963239|gb|ACL94595.1| flagellar biosynthesis protein FliR [Caulobacter crescentus NA1000] Length = 251 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 109/205 (53%), Gaps = 1/205 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ RVG+ +M +PG+ IP ++RL FA+ +++L P + +T+ V Sbjct: 15 LVFARVGAMVMTMPGIGDQAIPARIRLSFALLMALILAPLVQNTVGPIP-STLGGLGGAV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G ++R++ L G +IS L+ S S + T + + + ++GL Sbjct: 74 IHEVLIGLMIGSVLRLFMTSLTTAGEIISMQTTLSFAQSTNPSMEGSSTAVATFLSMLGL 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + D HH A+VKSY P + + + + V + +F + ++L++P + F Sbjct: 134 TLVMATDLHHLFIAAIVKSYTIFPFTRAVPVNDAAALAVQTVAQSFSLGVQLAAPVIVFS 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTP 218 +VFN++ GL+ +++P I+F+++P Sbjct: 194 LVFNLATGLVGRIMPAFQIFFVASP 218 >gi|118588697|ref|ZP_01546105.1| flagellar biosynthesis protein R [Stappia aggregata IAM 12614] gi|118438683|gb|EAV45316.1| flagellar biosynthesis protein R [Stappia aggregata IAM 12614] Length = 257 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 108/212 (50%), Gaps = 1/212 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+G+ +MLLP L S IP + RL A+A ++VL P ++ N L+ Sbjct: 17 LMFARLGTMVMLLPALGESTIPTRFRLTIALALTMVLYPVGSQYYPVEVTSNTYRMIALL 76 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIG 132 E+ +G GL ++ T LQ G +++ GL ++ + L + + I+G Sbjct: 77 FGEVAIGLGIGLCAKMITSVLQIAGMIMANQSGLAFALGTDFANQGQQGALFGNFLSILG 136 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + ++V D H+ V AL S+ P G G+ + + F I +R+S+PFL Sbjct: 137 ITLVFVSDSHYLVIAALHDSFMIFPPGLAPPVGDFSQNATETVAHVFSIAVRMSAPFLVV 196 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +VF +GLLNKL+PQ+ I+FI+ P I +G Sbjct: 197 GLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIG 228 >gi|163794130|ref|ZP_02188103.1| flagellar biosynthetic protein FliR [alpha proteobacterium BAL199] gi|159180744|gb|EDP65263.1| flagellar biosynthetic protein FliR [alpha proteobacterium BAL199] Length = 255 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R + ++LLPG+ +IP++VRL FA+A ++ + P + + + + A Sbjct: 13 QIMLVFARTSAVLLLLPGIGEVFIPVRVRLLFAVALALAVAPVIAPQLPPEP-TSAAGLL 71 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E+ +G GL+ R+ L L G VIS + GL T S S + + ++ + Sbjct: 72 TLVVGEVLIGLYFGLVARILWLTLDTAGRVISFSTGLASATVFNPSLSEQGSAIGLVLTL 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 +G++ L++ D HH V A+V+SY G EL G+ + ++ +F + ++LS+PF Sbjct: 132 LGIMMLFIADLHHMVIRAVVESYAVFRPGGELMIGDFSEAITELVSGSFKVAVQLSAPFF 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 F ++F +++G+L +L+PQ+ I+FI P I LG LF+ ++I Sbjct: 192 VFGLLFFVTLGVLARLMPQLQIFFIGLPAQIYLG-LFVWVTI 232 >gi|84502406|ref|ZP_01000542.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597] gi|84389218|gb|EAQ02015.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597] Length = 250 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 8/233 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS--K 71 L+ R+G+ +M LPG S++ ++ RL A+ S+V+ P + Q V + + Sbjct: 16 LVFGRIGAAMMFLPGFGESFVFVRHRLAAAVLLSLVITPLV-----AQGPVPSSPTDLVR 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + VE+ LG GL RV +Q G+ I GL+ + I T + + + + Sbjct: 71 AMAVEVTLGIWIGLAARVLLTAMQVAGAQIGMVSGLSNAFAPDIGSFQGSTLIATALLLG 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + ++ D HH + AL++SY T P G L G++ QT I L +++PF Sbjct: 131 AVAVIFAADIHHLIIEALIESYFTFPPGL-LMPGDLAEQMAMAAQTALHIGLSVAAPFYV 189 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +V N+ +GL N+++P +P++F++ P LI G L L++ + F F+ Sbjct: 190 MGVVLNVGLGLTNRMLPSLPVFFVAAPVLIAAGLFVLVLAVPTAIRTFMTRFV 242 >gi|328543169|ref|YP_004303278.1| flagellar biosynthetic protein fliR [polymorphum gilvum SL003B-26A1] gi|326412915|gb|ADZ69978.1| Flagellar biosynthetic protein fliR [Polymorphum gilvum SL003B-26A1] Length = 257 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 8/218 (3%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 PEI + LI R+G+ +MLLP L S IPM++RL A+A ++V P Sbjct: 9 PEIAAV-FMLIFARLGTMLMLLPALGESSIPMRLRLTVALALTLVFYPIGARAYPAGLVS 67 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + L+ EL +G GL R+ T LQ G +I+ +L +++G +D Sbjct: 68 DPGGLGILLAGELAIGFGIGLCARMITSVLQIAGMIIANQS--SLASALG-TDVTMSGQQ 124 Query: 125 NSLIG----IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 +L+G I+G+ ++V D H + AL S+ P G+ L + + ++ F Sbjct: 125 GALVGNFLAILGVTLVFVTDTHFLIIAALHDSFTLFPPGEWLPVADFATLATQIVAGMFS 184 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 I +R+S+PFL +VF +GLLNKL+PQ+ I+FI+ P Sbjct: 185 IAVRMSAPFLVVGLVFYFGLGLLNKLMPQMQIFFIAMP 222 >gi|39936945|ref|NP_949221.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris CGA009] gi|192292773|ref|YP_001993378.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris TIE-1] gi|39650802|emb|CAE29325.1| putative flagellar biosynthetic protein FliR [Rhodopseudomonas palustris CGA009] gi|192286522|gb|ACF02903.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris TIE-1] Length = 255 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 5/228 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAYYSK 71 L+ R+G+ +ML+P S IP +V+L A+ ++++LP ID+ + Sbjct: 17 LVFARIGAMVMLMPTFGESNIPTRVKLSIALLLTLIMLPLHRSAYQIDMSSLTPLLV--- 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G V G RV LQ G+VI+ +GL +++ + + + + ++ Sbjct: 74 LMLQEIAVGIVLGATARVTLSALQVAGAVIAQQLGLGFVSAVDPTQGQQGVVVGNFLTML 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G+ L+ D H+ V AL SY G+ L+ G++ + F + L+LS+PFL Sbjct: 134 GVTLLFATDMHYLVIQALSDSYKVFAPGELLHTGDVAALATKAFAAAFKLGLQLSAPFLV 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + + ++ F Sbjct: 194 FGLVFNIGLGVLARLMPQMQVYFVGVPLSIVIGFIVLAVVLTTMMGAF 241 >gi|89056678|ref|YP_512129.1| flagellar biosynthetic protein FliR [Jannaschia sp. CCS1] gi|88866227|gb|ABD57104.1| flagellar biosynthetic protein FliR [Jannaschia sp. CCS1] Length = 256 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 120/241 (49%), Gaps = 11/241 (4%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EI + + + RVG+C ++LPGL IP++VRL A+AF++ L P + + + + Sbjct: 13 EIWLATGIAVFLRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVSAVIP 72 Query: 66 --RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 A++S E G + G+ +R LQ G++ + + L+ D L P Sbjct: 73 PLTAFFS-----EAIAGLIIGMALRYLVHALQVAGTIAAQSTSLSQILGGATPDPL---P 124 Query: 124 LNSLIGIIGLLALWVID-FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 I ++G L L VI H + + SY +P G ++ V+ + +F + Sbjct: 125 AMGAILMLGGLTLAVISGLHVHLVQTFLHSYDVLPFGNLPGPRDLAGWSVDQVSASFSLA 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + L++PFL +++N+++G++NK +PQ+ + F+ P + G L ++ I+ + H+ Sbjct: 185 VSLAAPFLVASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPVWLHA 244 Query: 243 F 243 F Sbjct: 245 F 245 >gi|114765218|ref|ZP_01444350.1| flagellar biosynthesis protein [Pelagibaca bermudensis HTCC2601] gi|114542353|gb|EAU45381.1| flagellar biosynthesis protein [Roseovarius sp. HTCC2601] Length = 251 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 9/233 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+G +M +P L + IP++ RL F + S+ L P + Q V+ LV Sbjct: 16 LVFARIGGMLMFVPALGETVIPVRHRLAFGVLLSLALYPAVP-----QGPVSLDAPGPLV 70 Query: 74 ---MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +EL LG G+ R+ L+F G I GL+ S + T +++ + + Sbjct: 71 GALAIELTLGLWIGVTARILLSALEFAGYQIGLVSGLSNAFSPSLGSFQGSTLISTGLML 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 G+ ++ D HH + A+V SY P GQ L ++ V + +F + L + +PF Sbjct: 131 GGVAMIFATDLHHLIIGAMVSSYDLFPPGQILP-SDLAQQIVKAVSQSFYLGLSIVAPFY 189 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ N+ +GL +++P +P++F++ P LI G L L ++ +++ +F+ F Sbjct: 190 VMGLLVNLGMGLAARMMPSLPVFFVAAPVLIMAGLLVLVMATPVMLREFAERF 242 >gi|254461302|ref|ZP_05074718.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium HTCC2083] gi|206677891|gb|EDZ42378.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium HTCC2083] Length = 253 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 117/233 (50%), Gaps = 4/233 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +S L++ RV + + LLP L + IP +V+L ++ S+++ P + D QN + A + Sbjct: 14 LSFILVLFRVAALVSLLPALGEASIPARVKLVMSVCMSLIVFPIVHDVS--QNSLAGANW 71 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + E+ +G G ++RV+ LQ GS+ + + +L +G + + L +I Sbjct: 72 LSAAIAEVGIGLWFGFMLRVFVFCLQIAGSIAAQST--SLSQILGSAGAEPLPALGHVIT 129 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 G+ + H L+ SY +P GQ + I + V + F + L++PF Sbjct: 130 TAGMTLALSLGLHVSAVQYLIGSYTILPTGQLPDISTISEAGVAQIAWGFQLAFSLAAPF 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++N+++G++N+ +PQ+ + F+ P + + L +SI +I+ ++ + Sbjct: 190 FILSLLYNLTLGVINRAMPQLMVAFVGAPVITAGALVLLAISIPVILKTWAGA 242 >gi|209884539|ref|YP_002288396.1| flagellar biosynthetic protein FliR [Oligotropha carboxidovorans OM5] gi|209872735|gb|ACI92531.1| flagellar biosynthetic protein FliR [Oligotropha carboxidovorans OM5] Length = 258 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 121/239 (50%), Gaps = 23/239 (9%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ + L+ RVG+ +MLLPG + +P+++RL A+ +++LL ++R Sbjct: 10 VLAATFMLVFARVGAMMMLLPGFGEANVPVRLRLGIALLLAMILL-----------PLHR 58 Query: 67 AYYS------KLVMV----ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGIS 116 A Y VM+ E+ +G V G R L GS+I+ IGL T++ + Sbjct: 59 AAYHVDLTSINAVMILMVHEIIIGVVLGATARFTLAALSVAGSIIAQQIGLGFVTAVDPT 118 Query: 117 DSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ 176 L + + I+GL ++ D H+ V AL SY G+ + G++ + Sbjct: 119 QDQQSVILANFLTILGLTLIFATDTHYLVIAALNDSYTLFQPGELMPSGDVAALATKAFT 178 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 F I ++L++PF+ F ++FN+ +GLL +++PQ+ +YF+ P I G FL L I ++ Sbjct: 179 MAFTIGVQLAAPFIIFGLIFNLGLGLLARMMPQMQVYFVGVPLSILAG--FLLLGIVLV 235 >gi|126738572|ref|ZP_01754277.1| flagellar biosynthetic protein FliR [Roseobacter sp. SK209-2-6] gi|126720371|gb|EBA17077.1| flagellar biosynthetic protein FliR [Roseobacter sp. SK209-2-6] Length = 259 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 122/219 (55%), Gaps = 10/219 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ RV + +LP Y+PM+V+L A+AF+ V+ P L I + V + +LV Sbjct: 23 IVFLRVAAMSSVLPAFGEQYVPMRVKLAIAIAFTFVVAPAL-PQIGAPDHV--VLFGRLV 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E +G G+ +R++ +GLQ G++ + + L+ Q GI P + ++G Sbjct: 80 VSEAIIGLALGMGVRLFIMGLQTAGTIAAQSTSLS-QVLGGIGAE--AMPAIGAVLMVGG 136 Query: 134 LALWVI-DFHHQVFYALVKSYGTIPIGQELNFGNIFSSF-VNMLQTTFMIMLRLSSPFLF 191 LAL V+ H ++ L+ SY P+G E ++FS + V+ + +F + L++PFL Sbjct: 137 LALAVMMGLHVRIAEFLIYSYQFFPVG-EFPAASMFSKWGVHRISQSFYMAFTLAAPFLV 195 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 +++N+++G++N+ +PQ+ ++F+ P +I LG + + + Sbjct: 196 TAVIYNLTLGVINRAMPQLMVFFVGAP-VITLGGMLILM 233 >gi|154253016|ref|YP_001413840.1| flagellar biosynthesis protein FliR [Parvibaculum lavamentivorans DS-1] gi|154156966|gb|ABS64183.1| flagellar biosynthetic protein FliR [Parvibaculum lavamentivorans DS-1] Length = 253 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 108/208 (51%), Gaps = 7/208 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ + IML+P L + IP QVRL A+ S V++P + + A LV Sbjct: 16 LVFSRLAAMIMLMPALGEASIPAQVRLMLALLLSFVMMPLVAGSYG----AIPATVPGLV 71 Query: 74 MV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E+ +G G R+ L G++I+ + L+ ++ S + + + + Sbjct: 72 FIVCSEIAVGLFIGTAARLIMSALHVAGNIIAAQMSLSFAMNVDPSQGQQGVLIANFLSL 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 +G+ ++ + H + A+ SY G+ + G+ + V M+ +F + L+L++PFL Sbjct: 132 LGVTLIFATNLDHVLIAAMRDSYELFKPGEPIPVGDFLAMAVKMVSGSFRLGLQLAAPFL 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++F + IG+L++L+PQI I+FI+ P Sbjct: 192 VFGLIFYLGIGILSRLMPQIQIFFIAMP 219 >gi|254473504|ref|ZP_05086901.1| type III secretion system inner membrane R protein [Pseudovibrio sp. JE062] gi|211957620|gb|EEA92823.1| type III secretion system inner membrane R protein [Pseudovibrio sp. JE062] Length = 227 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 7/212 (3%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL---VMVELFLG 80 M +PG S + +QVRL A++ ++ + P + + ++ ++ A +L + VEL +G Sbjct: 1 MAMPGFSSPRVMVQVRLFIAISATLAISPLI--LVLVEPIISAASLDELLRIIFVELLIG 58 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + R + LQ + A N Q + + + P+ LI + L++ Sbjct: 59 FLIAAFGRAFFGMLQMMAGAAANASSFN-QPAPIVEEFQQLPPMAGLITLTATAMLFITG 117 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 H VF L +SY IP+G + F L ++ LR++SPFL + IV N+++ Sbjct: 118 AHADVFIGLAESYQAIPVGGDFVPSAAVDQFSTKLMQGLLLALRITSPFLIYGIVVNLTL 177 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 GL N+L+PQ+P+YF++ P ++ +G LF+ I Sbjct: 178 GLTNRLMPQMPVYFVALPVVV-MGGLFVLWQI 208 >gi|83858791|ref|ZP_00952313.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633] gi|83853614|gb|EAP91466.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633] Length = 252 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ R+G +ML+PG+ + IP+++RL FA+AFS V+ P + ++ A + V Sbjct: 16 MVFARMGGILMLMPGIGETSIPVRLRLAFALAFSFVIGPIVAPSLPAPP-DTLAGVAITV 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 +E +G + G R+ G +I GL + S + A + +I + Sbjct: 75 GLETLIGVMIGAASRILLTAGAIAGQIIGYQTGLAMAQSFDPAQGQAGVLPAQFLNLIFI 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + V H ++ A SY +P GQ +G+ + + F+I ++++SP + F Sbjct: 135 VIVLVTPLHQEMLLAAAGSYELMPAGQPPMWGDAAYWALELFIDAFVIGVQIASPLIVFG 194 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +VF + +G+L++L+PQ I+FI+ P I +G + +S+ +V ++ + Sbjct: 195 LVFYLGLGVLSRLMPQAQIFFIAMPLNILIGFSIMAMSLGAMVMLWTDRY 244 >gi|255263738|ref|ZP_05343080.1| flagellar biosynthetic protein FliR [Thalassiobium sp. R2A62] gi|255106073|gb|EET48747.1| flagellar biosynthetic protein FliR [Thalassiobium sp. R2A62] Length = 260 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 115/218 (52%), Gaps = 3/218 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 +I RVG+ + +LPGL +P +VRL A+A ++++ P + DL + L+ Sbjct: 21 VIFLRVGAMMAVLPGLGERSVPARVRLGLAIALTVLVTPLIAP--DLPEPEEVSNLVGLL 78 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 ++E +G + G+ +R++ L G++ + + L+ Q G + + A+ + ++ GL Sbjct: 79 LIEASIGLLLGMSLRLFVFTLSTAGAIAAQSTSLS-QIFGGSAGAEAQPAIGHVLVTGGL 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + H +V +V SYG+ P G L+ + V+ + +F L++PF Sbjct: 138 TIAMITELHLRVVEFIVMSYGSFPTGVPLSATFVADFGVSRVAASFAFAFTLAAPFFIAS 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 +++N+++G++N+ +PQ+ + F+ P + G + L LS Sbjct: 198 LIYNVTLGVINRAMPQLMVSFVGAPVITAGGLVLLALS 235 >gi|269836607|ref|YP_003318835.1| flagellar biosynthetic protein FliR [Sphaerobacter thermophilus DSM 20745] gi|269785870|gb|ACZ38013.1| flagellar biosynthetic protein FliR [Sphaerobacter thermophilus DSM 20745] Length = 260 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 5/240 (2%) Query: 1 MTISPEIIMMSL---FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT 57 MTI+ ++ S+ L+V R+G+ +M +PG + +P +++ A+A S+VL+PF Sbjct: 1 MTIASPLVPQSIAVFLLMVTRIGTMLMFMPGFAGRSVPPAIKVLAALALSLVLVPFTRP- 59 Query: 58 IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117 + + A ++ + E LG + G I V ++ S++ IGLNL S Sbjct: 60 -GTETLTDPASFTVGLAREFLLGLLMGFGIAVVFGAIEMAASLVGAQIGLNLSGVFNPSL 118 Query: 118 SLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177 L TPLN+ + L + + HH V AL +S+ T+PIG N ++ + + Sbjct: 119 DLQGTPLNTFYLVAAALVFFSANGHHLVLMALHRSFQTVPIGSAALADNAGTAIIALASL 178 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 F+ LR+ P + + +G+LN++VPQ+ ++F+ P I G L L++ ++ Sbjct: 179 MFVDALRIGLPVAGTLLAVDACLGVLNRMVPQMNVFFVGLPVKIFAGFAVLLLTLPFLIR 238 >gi|221640819|ref|YP_002527081.1| Type III secretion system inner membrane R protein [Rhodobacter sphaeroides KD131] gi|221161600|gb|ACM02580.1| Type III secretion system inner membrane R protein [Rhodobacter sphaeroides KD131] Length = 260 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 112/211 (53%), Gaps = 11/211 (5%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 +FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P L D + + Y Sbjct: 22 VFLVFLRVGAAMALLPPFGETSLPVRVRLAAALAFTAIVFPALSDRVPI-------YDGS 74 Query: 72 LV--MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L + E +G + G +R++ L LQ G++ + A +L G + + + +++ Sbjct: 75 LAPLLAETAVGLLLGASLRLFVLALQTAGTIAAQAT--SLAQLFGSTAGEPQPVMTNILT 132 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + GL V H Q+ L++SY +P + + ++ + + ++ +F + L+ PF Sbjct: 133 LAGLALAVVGGLHVQIALFLIQSYDILPAARLPDPADVATWGLTLVVKSFALGFMLAMPF 192 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 + +FN+++G++N+ +PQ+ ++F+ P L Sbjct: 193 VAASFIFNVALGIVNRAMPQLMVFFVGAPAL 223 >gi|89068707|ref|ZP_01156093.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] gi|89045670|gb|EAR51732.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] Length = 251 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 3/208 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+G+ + +PG +P + RL A+A ++ L P I+ + L+ +E Sbjct: 19 ARIGAIFVFMPGFGERPVPARFRLFMALAVALALYP--ATGIEPVTLDAPVAFLGLLALE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G GL R+ LQF G I GL+ + T + + + + Sbjct: 77 VTIGLWIGLTARIVMSALQFAGYQIGYVAGLSNALAPTTGQFEGATMVAGALMMAATALI 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 + D HH + AL+ SY P+G+ + G++ + V + +F + L LS PF IV Sbjct: 137 FATDLHHLIIRALLTSYEVFPVGRIMP-GDLAAQTVAAVGASFYVGLALSVPFYVMGIVL 195 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLG 224 N+ +GL N+++P +P++F++ P LI G Sbjct: 196 NVGLGLANRMMPTLPVFFVAGPVLIASG 223 >gi|114777580|ref|ZP_01452561.1| Flagellar biosynthesis protein FliR [Mariprofundus ferrooxydans PV-1] gi|114552051|gb|EAU54568.1| Flagellar biosynthesis protein FliR [Mariprofundus ferrooxydans PV-1] Length = 260 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 118/231 (51%), Gaps = 4/231 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ RV + IM+LP L +P Q++ + +I++ P + D + A+ + Sbjct: 16 LVMLRVSALIMMLPILGHQLVPAQIKRGLIVLLTILIFPLVADKVAAIPLKPVAFV-IVA 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ + L ++ +Q G +IS +G+++ ++ ++ L + + Sbjct: 75 IHEILVAAAIALFAQLIFAAIQLAGQLISFQMGMSVANVFDPMTHSQQSVVSQLAVTLAM 134 Query: 134 LALWV-IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L LW+ + HH AL++S+ PI Q + F + S+ + T F++ L++++P + Sbjct: 135 L-LWISVGAHHMFITALIESFTLFPIHQAIYFPAL-STLTDAAATMFVLALKIAAPLMVL 192 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + +++GLL++ VPQI ++F+S P +GLG L L + VY S +F Sbjct: 193 MTLVYVALGLLSRAVPQIQVFFVSFPLTVGLGLLTFALGMPAFVYLVSDAF 243 >gi|329888174|ref|ZP_08266772.1| flagellar biosynthetic protein FliR [Brevundimonas diminuta ATCC 11568] gi|328846730|gb|EGF96292.1| flagellar biosynthetic protein FliR [Brevundimonas diminuta ATCC 11568] Length = 256 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 13/228 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI RVG+ +MLLPG SY+P +VRL A+ S+ L P + ++ A V Sbjct: 15 LIFARVGAILMLLPGFGESYVPPRVRLSLALVLSLALWPIVGASLPALPATLGATVG-WV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL------AETPLNSL 127 M E+ G G ++R + L G ++S LQT++G S + T L++ Sbjct: 74 MREVLTGLAIGAILRSFMTALTTAGEIVS------LQTTLGFSQTANPLQAQPGTTLSAF 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++G+ ++ + HH +V SY I + L + V L +FM+ ++L++ Sbjct: 128 LMLLGVTLVFATNTHHLFIGGMVGSYEAIAPAKPLIVSDFTQMAVKTLSQSFMLGVQLAA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P L F ++FN++ GL+ +++P +YF + P + LG LS+ ++ Sbjct: 188 PVLVFALIFNLASGLVARVMPSFQVYFAAAPLSVILGLSVFTLSLGVV 235 >gi|149203119|ref|ZP_01880090.1| flagellar biosynthetic protein FliR [Roseovarius sp. TM1035] gi|149143665|gb|EDM31701.1| flagellar biosynthetic protein FliR [Roseovarius sp. TM1035] Length = 254 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 117/216 (54%), Gaps = 12/216 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV I LLPG S +PM+++L +AF++++ P L + DL + RA L++ E Sbjct: 24 RVAPIIGLLPGFGESSVPMRIKLVLVIAFTLIVTPVL--SPDLAD-QARAPTVGLILSET 80 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII--GLLA 135 +G G+ +R++ + LQ GS+ + + L I + ++TPL ++ ++ G +A Sbjct: 81 IVGLALGVALRLFLMALQMAGSIAAQSTSLA-----QILGNASQTPLPAIGHLLATGAVA 135 Query: 136 LWVI-DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 L +I H ++ +V SYG P+ + + G + V + F L++PF+ + Sbjct: 136 LMMIMGVHVRLAEMIVLSYGIFPVAEFPDVGTLSQWGVARIAQAFSFGFSLAAPFVLVSV 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++N+++G++N+ +PQ+ + + P + L +LFL + Sbjct: 196 LYNLTLGIINRAMPQLMVVLVGAPAAMAL-TLFLLM 230 >gi|146278645|ref|YP_001168804.1| type III secretion system inner membrane R protein [Rhodobacter sphaeroides ATCC 17025] gi|145556886|gb|ABP71499.1| type III secretion system inner membrane R protein [Rhodobacter sphaeroides ATCC 17025] Length = 258 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 11/210 (5%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ RVG+ + LLP +P +VRL A+AF+ ++ P + D + A+ Sbjct: 22 FLVFIRVGAAMALLPAFGEMTLPARVRLTIALAFTAIVFPAVSDGVP-------AFDGSP 74 Query: 73 VM--VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 V +E +G V G+ +R++ L LQ G+V + A+ +L G + + +++ + Sbjct: 75 VALGIEAAIGLVLGISLRLFVLALQTAGTVAAQAV--SLSQMFGSPSGEPQPVIGNVLTL 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 GL H ++ L+ SY +P + G++ ++++ TF + LS PF+ Sbjct: 133 AGLAIAVAGGLHVRLAEFLILSYDLLPAARLPVAGDVADWGLHLIVHTFALAFMLSMPFV 192 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 VFN+++G++N+ +PQ+ ++F+ P L Sbjct: 193 AASFVFNVALGIINRAMPQLMVFFVGAPAL 222 >gi|83944180|ref|ZP_00956636.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36] gi|83955119|ref|ZP_00963775.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1] gi|83840448|gb|EAP79621.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1] gi|83845047|gb|EAP82928.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36] Length = 251 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 5/219 (2%) Query: 1 MTISPEI--IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 M I P I + S F++ R+G+ +M +PG IP++ RL A+ S+ LLP Sbjct: 1 MAIEPFISTLFFSFFVVFARIGTALMFMPGFGEVQIPVRPRLSLAVLISLSLLPLTPIAS 60 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 L + A + L+ E+ +G GL R+ LQF G + GL Sbjct: 61 ALPDSAVTAVF--LLGAEVLIGLWIGLCARILLSALQFAGFQVGQVSGLANAFGPSFGSF 118 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT 178 T + +L+ + + ++V D HH + AL+ SY P GQ ++ + + + Sbjct: 119 EGATMVATLLLMSAVTMIFVTDTHHLIIRALLASYQVFPPGQ-FVLADLADQILRVASAS 177 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIST 217 I +++PF ++ N+ +GL N+++PQ+P++F++ Sbjct: 178 LYIGTAIAAPFFVMGVILNLGMGLANRMMPQLPVFFVAA 216 >gi|302384125|ref|YP_003819948.1| flagellar biosynthetic protein FliR [Brevundimonas subvibrioides ATCC 15264] gi|302194753|gb|ADL02325.1| flagellar biosynthetic protein FliR [Brevundimonas subvibrioides ATCC 15264] Length = 257 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 33/238 (13%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL-------LPFLWDTID-LQNFVN 65 LI R+G+ ++ LPG+ SY+P ++RL A+ S+ L LP L +TI + ++ Sbjct: 15 LIFARIGAILLSLPGIGESYVPPRIRLSLALVVSLALWPIVSPSLPALPETIGGMVGWII 74 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 R E+ G + G ++R +T L G ++S LQT++ + + PL Sbjct: 75 R---------EVVTGLMIGAILRAFTGALATAGEIVS------LQTTLSFAQT--ANPLQ 117 Query: 126 SLIG--------IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177 + G I+G + ++ + HH LV SY I + L + + + Sbjct: 118 AQPGATISAFLMILGTVLVFATNTHHLFIAGLVGSYELIAPARPLIMADFTELAIRTIAD 177 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 +FM+ ++L++P + F ++FN++ GL+ +++PQ ++F + P + LG LS+ ++ Sbjct: 178 SFMLGVQLAAPVIVFALIFNLASGLVARVMPQFQVFFAAAPLSVILGLSIFALSLGVM 235 >gi|126463740|ref|YP_001044854.1| type III secretion system inner membrane R protein [Rhodobacter sphaeroides ATCC 17029] gi|332559797|ref|ZP_08414119.1| FliR2 [Rhodobacter sphaeroides WS8N] gi|126105404|gb|ABN78082.1| type III secretion system inner membrane R protein [Rhodobacter sphaeroides ATCC 17029] gi|332277509|gb|EGJ22824.1| FliR2 [Rhodobacter sphaeroides WS8N] Length = 260 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 110/210 (52%), Gaps = 11/210 (5%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P + D + Y S + Sbjct: 23 FLVFLRVGAAMALLPAFGETSLPVRVRLAAALAFTAIVFPAVSDRVP-------TYDSTV 75 Query: 73 V--MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E +G + G +R++ L LQ G++ + A +L G + + + +++ + Sbjct: 76 APLLTETAVGLLLGASLRLFVLALQTAGTIAAQAT--SLAQLFGSTAGEPQPVMTNILTL 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 GL H Q+ L++SY +P + + ++ + + ++ +F + L+ PF+ Sbjct: 134 AGLALAVAGGLHVQIALFLIQSYDILPAARLPDPADVATWGLALVVKSFALGFMLAMPFV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 +FN+++G++N+ +PQ+ ++F+ P L Sbjct: 194 AASFIFNVALGIVNRAMPQLMVFFVGAPAL 223 >gi|254418936|ref|ZP_05032660.1| flagellar biosynthetic protein FliR [Brevundimonas sp. BAL3] gi|196185113|gb|EDX80089.1| flagellar biosynthetic protein FliR [Brevundimonas sp. BAL3] Length = 261 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID--LQNFVNRAYYSK 71 LI R+G+ +ML+PG +Y+P ++RL A+ S+ L P + D++ + A + Sbjct: 15 LIFARIGAILMLIPGFGETYVPPRIRLSLALLISLALWPVVRDSLPGLPETLGGMAGW-- 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V+ E+ +G + G+L+R++ L G ++S L+ + + + + S + + Sbjct: 73 -VIREVVVGLMIGMLLRMFLTSLMTAGEIVSLQTTLSFAQTANPLQAQPGSTVGSFLLLF 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G+ ++ D HH +V SY I + L G+ V L +F++ ++L++P L Sbjct: 132 GVTLIFATDTHHLFIAGMVGSYSLIAPAKPLIMGDFTEMAVRTLGDSFLLGVQLAAPVLV 191 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 F ++FN++ GL+ +++P +YF + P + LG LS+ Sbjct: 192 FALIFNLASGLIARVMPSFQVYFAAAPLSVILGLSIFALSL 232 >gi|77464898|ref|YP_354402.1| flagellar biosynthesis pathway, component FliR [Rhodobacter sphaeroides 2.4.1] gi|77389316|gb|ABA80501.1| Flagellar biosynthesis pathway, component FliR [Rhodobacter sphaeroides 2.4.1] Length = 260 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 109/210 (51%), Gaps = 11/210 (5%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P + D + Y S + Sbjct: 23 FLVFLRVGAAMALLPAFGETSLPVRVRLAAALAFTAIVFPAVSDRVP-------TYDSTV 75 Query: 73 V--MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E +G + G +R++ L LQ G++ + A +L G + + + +++ + Sbjct: 76 APLLTETAVGLLLGASLRLFVLALQTAGTIAAQAT--SLAQLFGSTAGEPQPVMTNILTL 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 GL H Q+ L++SY +P + ++ + + ++ +F + L+ PF+ Sbjct: 134 AGLALAVAGGLHVQIALFLIQSYDILPAARLPEPADVATWGLALVVKSFALGFLLAMPFV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 +FN+++G++N+ +PQ+ ++F+ P L Sbjct: 194 AASFIFNVALGIVNRAMPQLMVFFVGAPAL 223 >gi|218530778|ref|YP_002421594.1| flagellar biosynthetic protein FliR [Methylobacterium chloromethanicum CM4] gi|218523081|gb|ACK83666.1| flagellar biosynthetic protein FliR [Methylobacterium chloromethanicum CM4] Length = 258 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 123/231 (53%), Gaps = 2/231 (0%) Query: 11 SLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA-Y 68 + FLI RVG+ +ML+PGL I ++RL A+ ++VL P + + N A Sbjct: 14 AAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPTGNAALAAPA 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ + + + + + Sbjct: 74 LIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGGQQAAIGNFL 133 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G+ + D HH A+ +SY +P + ++ +F + +R+S P Sbjct: 134 AMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLALHAFSRSFALAVRISGP 193 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 F+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F Sbjct: 194 FIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLF 244 >gi|254467056|ref|ZP_05080467.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium Y4I] gi|206687964|gb|EDZ48446.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium Y4I] Length = 259 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/248 (22%), Positives = 122/248 (49%), Gaps = 11/248 (4%) Query: 3 ISPEIIMM------SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD 56 + PE+++M ++ RV + + +LP + Y+P +V+L A AF+ V+ P L Sbjct: 6 LPPELVLMLGAGFWHAAIVFLRVAAMVSVLPAMGELYVPARVKLAVAAAFTFVVAPALPA 65 Query: 57 TIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGIS 116 + N Y++ + E +G G+ +R++ L LQ G++ + A L+ Q GI Sbjct: 66 FPEPDNVFA---YARFAVTEAIIGLALGIGVRIFVLALQTAGAMAAQATSLS-QVLGGIG 121 Query: 117 DSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ 176 L +++ I G+ ++ H +V L+ SY P G+ + V + Sbjct: 122 AEPMPA-LGAVLMISGVTLATMMGLHVRVAELLIGSYRMFPAGEFPVAAGLTEWGVFRVS 180 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +F + L++PF+ +++N+++G++N+ +PQ+ + + P + +G L + +I+ Sbjct: 181 QSFSLAFTLAAPFVITAVIYNLALGVINRAMPQLMVAMVGAPVITLMGLFILMVGSPVIL 240 Query: 237 YQFSHSFL 244 +S + + Sbjct: 241 DVWSRALM 248 >gi|226225722|ref|YP_002759828.1| flagellar biosynthetic protein FliR [Gemmatimonas aurantiaca T-27] gi|226088913|dbj|BAH37358.1| flagellar biosynthetic protein FliR [Gemmatimonas aurantiaca T-27] Length = 295 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 9/237 (3%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L R+G +++ P S +PM++R + F+++LLP T D A Sbjct: 17 VATALVLTALRIGGLLLIAPAWSAKSVPMKLRTAMLVLFAVLLLPTALATTDRATL---A 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP---L 124 + E +G G + G +F G +++T IGL+ I D + T Sbjct: 74 ITPATFLAETAIGFAFGFAAALVIAGAEFAGELMTTTIGLS---GAAIFDPVNNTQGAIF 130 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 S + ++ L L + H + A+ KS+ +P+G ++ F + T F L+ Sbjct: 131 GSFMQLMALTLLLITGGHIVMIEAIAKSFSVLPLGAPIDMQAGFLALTKAGGTIFATGLQ 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++P + +V NI++ +L + PQ+ I ++ P IG+G L S+ +IV+ Sbjct: 191 FAAPVIAAILVTNIALAILGRAAPQLQIMSLAFPLQIGIGLLTFAGSVGLIVHALGE 247 >gi|85706161|ref|ZP_01037256.1| flagellar biosynthetic protein FliR [Roseovarius sp. 217] gi|85669325|gb|EAQ24191.1| flagellar biosynthetic protein FliR [Roseovarius sp. 217] Length = 254 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 118/233 (50%), Gaps = 11/233 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ RV I LLPG +PM++++ AF+++ P + DL + V+ A + + Sbjct: 20 LVFLRVAPIIGLLPGFGEQSVPMRIKVVLVFAFTLIAAPAI--APDLPDHVH-APSALTI 76 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS---LIGI 130 + E +G + G+ +R++ + LQ GS+ + + L+ I + + TP+ S L+ Sbjct: 77 LSETLVGLIIGIGLRLFLMALQMAGSIAAQSTSLS-----QILGNASLTPMPSIGHLLAT 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 G+ + ++D H +V ++ SY P+ I V+ + F + L++PF+ Sbjct: 132 GGVALMMIMDLHVRVAELMILSYRVFPVQGVFKVSAITQWGVSQIAHAFSLGFMLAAPFV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++N+++G++N+ +PQ+ + F+ P + L L L ++ ++ +F Sbjct: 192 LVSVLYNLTLGVINRAMPQMMVAFVGAPAITALALFVLMLVAPALLMAWAQAF 244 >gi|296531765|ref|ZP_06894587.1| flagellar biosynthesis protein [Roseomonas cervicalis ATCC 49957] gi|296267904|gb|EFH13709.1| flagellar biosynthesis protein [Roseomonas cervicalis ATCC 49957] Length = 253 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 102/212 (48%), Gaps = 8/212 (3%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY-- 69 L L+ R+ + ++LLPG + +P ++R+ A+ L+ F + + Sbjct: 18 LLLVFGRISAALLLLPGFGETTLPARIRILAAL-----LIAFCLAPLAGPAPAPPGAFGM 72 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++E+ G G L R+ +Q G +I IG++ + GI A L S++ Sbjct: 73 AAALVLEIAAGAFLGTLSRMMLSAVQVAGQIIGQCIGISNAFAFGIGADNAAI-LGSMLY 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 L+AL+ +D HH AL SY +P+G L + + F + ++LS PF Sbjct: 132 AAVLVALFAMDGHHVGLRALADSYRLLPLGDPLPAAASARAVTELAAGAFRLAMQLSMPF 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 L ++FN ++ +N+ +P +P++ I P ++ Sbjct: 192 LVLSVLFNAALAGINRALPAMPVFLIGAPAIL 223 >gi|163852024|ref|YP_001640067.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens PA1] gi|240139291|ref|YP_002963766.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens AM1] gi|163663629|gb|ABY30996.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens PA1] gi|240009263|gb|ACS40489.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens AM1] Length = 258 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 123/231 (53%), Gaps = 2/231 (0%) Query: 11 SLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA-Y 68 + FLI RVG+ +ML+PGL I ++RL A+ ++VL P + + N A Sbjct: 14 AAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPTGNAALAAPS 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ + + + + + Sbjct: 74 LIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGGQQAAIGNFL 133 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G+ + D HH A+ +SY +P + ++ +F + +R+S P Sbjct: 134 AMLGVTLILATDLHHVALEAIGRSYVLLPPSGVPAMADAAKLALDAFSRSFALAVRISGP 193 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 F+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F Sbjct: 194 FIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLF 244 >gi|162147443|ref|YP_001601904.1| flagellar biosynthetic protein fliR [Gluconacetobacter diazotrophicus PAl 5] gi|161786020|emb|CAP55602.1| putative flagellar biosynthetic protein fliR [Gluconacetobacter diazotrophicus PAl 5] Length = 270 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 22/245 (8%) Query: 8 IMMSLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVN 65 ++ ++FL+V CRV + +M PGL + PM+VR A++ ++ +LP + D +++ Sbjct: 14 VLATMFLVVLCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRLVEVSGTAL 73 Query: 66 RAYYSKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL----NLQTSMGISDSL 119 R + +V EL G G L R+ T+ + V++ GL + +G S + Sbjct: 74 RMPSVAIAVVVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGLASVLQPDSELGASSTA 133 Query: 120 AETPLNSLIGII----GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNML 175 + LI +I GL AL A+ SY P G G++ S Sbjct: 134 ISHMASMLIPVIFLSTGLYAL--------PLAAITGSYSLFPPGHMPMVGDMARSVTEAT 185 Query: 176 QTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 TF + L+L++PF+ ++ +G+LN+L+P I +Y I+ P + G + L + I+++ Sbjct: 186 SQTFALALQLAAPFVLIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLIQVM 245 Query: 236 --VYQ 238 V+Q Sbjct: 246 TGVWQ 250 >gi|114570481|ref|YP_757161.1| flagellar biosynthetic protein FliR [Maricaulis maris MCS10] gi|114340943|gb|ABI66223.1| flagellar biosynthetic protein FliR [Maricaulis maris MCS10] Length = 250 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 1/219 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+G+ +MLLPG IP++ RL FA+ F ++L P + ++ + A + +V Sbjct: 14 LVFARLGAILMLLPGFGEPSIPVRFRLAFALLFCLILGPIIAPSLPVMPEQPLAM-AGIV 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 M EL +G + G + R++ G VI GL + S S +++ + + L Sbjct: 73 MSELIIGLMIGAVARIFMSTAAVAGQVIGMQSGLAMAQSFDPSQGAQGALISTFLNLTFL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + L + HH + SY G + + ++ F I ++L+SP + + Sbjct: 133 MLLLATNTHHMLLQMAANSYQVFDPGSMPSLTDAADWALSAFIDAFRIGVQLASPLIMYG 192 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++F +++G+L++L+PQ I+FI+ P I +G L +++ Sbjct: 193 LLFYLALGVLSRLMPQAQIFFIAMPSNIMIGLFILAIAL 231 >gi|209964222|ref|YP_002297137.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW] gi|209957688|gb|ACI98324.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW] Length = 254 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 106/214 (49%), Gaps = 1/214 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + M++P + I ++RL FA+ + V+ P + + + A + Sbjct: 13 AFLLVFVRLAAAFMIIPAIGEQAISARIRLLFALVVAAVVTPVVRQYLPPEPSAP-AELA 71 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E+ +G G L RV L+ G +I+ +GL + + + P+ +L+GI Sbjct: 72 ALVVSEILVGLFIGTLARVLLTALETGGFLIANQLGLAAAQAFNPALAAPGNPIGALLGI 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 ++ ++ D HH + A+V SY L G+ + T+F I ++L+ PF Sbjct: 132 GAVVVIFATDLHHMLILAVVDSYTLFSPADGLPLGDATEHLAQTVNTSFAIGVQLAVPFF 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +F + +GL+ +LVPQ+ ++F+ P I +G Sbjct: 192 VIGFLFYLGLGLVARLVPQVQVFFVGLPIQIAIG 225 >gi|254561747|ref|YP_003068842.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens DM4] gi|254269025|emb|CAX24986.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens DM4] Length = 258 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 122/231 (52%), Gaps = 2/231 (0%) Query: 11 SLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA-Y 68 + FLI RVG+ +ML+PGL I ++RL A+ ++VL P + + N A Sbjct: 14 AAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPTGNAALAAPS 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ + + + + + Sbjct: 74 LIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGGQQAAIGNFL 133 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G+ + D HH A+ +SY +P + + +F + +R+S P Sbjct: 134 AMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLALAAFSRSFALAVRISGP 193 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 F+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F Sbjct: 194 FIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLF 244 >gi|295690542|ref|YP_003594235.1| flagellar biosynthetic protein FliR [Caulobacter segnis ATCC 21756] gi|295432445|gb|ADG11617.1| flagellar biosynthetic protein FliR [Caulobacter segnis ATCC 21756] Length = 251 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 110/210 (52%), Gaps = 11/210 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-----DLQNFVNRAY 68 L+ RVG+ +M +PG+ +P ++RL FA+ +++L P + DT+ L V Sbjct: 15 LVFSRVGAMVMTMPGVGDQSVPPRIRLSFALLMALLLGPLVQDTVPPIPTTLGGLVGAVI 74 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + E+ +G + G ++R++ + L G +IS L+ + S + T + + + Sbjct: 75 H------EILIGLMIGSVLRLFMISLTTAGEIISLQTTLSFAQTTNPSMQGSSTAVATFL 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++GL + HH A+VKSY P + + + + V + +F + ++L++P Sbjct: 129 SMLGLTLIMATGLHHLFIGAIVKSYTLFPFTRAVPVNDAVTLAVRTVAESFSLGVQLAAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 + F +VFN++ GL+ +++P I+F+++P Sbjct: 189 VIVFSLVFNLATGLVGRVMPSFQIFFVTSP 218 >gi|209545553|ref|YP_002277782.1| putative flagellar biosynthetic protein FliR [Gluconacetobacter diazotrophicus PAl 5] gi|209533230|gb|ACI53167.1| putative flagellar biosynthetic protein FliR [Gluconacetobacter diazotrophicus PAl 5] Length = 253 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 22/241 (9%) Query: 12 LFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYY 69 +FL+V CRV + +M PGL + PM+VR A++ ++ +LP + D +++ R Sbjct: 1 MFLVVLCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRLVEVSGTALRMPS 60 Query: 70 SKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL----NLQTSMGISDSLAETP 123 + +V EL G G L R+ T+ + V++ GL + +G S + Sbjct: 61 VAIAVVVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGLASVLQPDSELGASSTAISHM 120 Query: 124 LNSLIGII----GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 + LI +I GL AL A+ SY P G G++ S TF Sbjct: 121 ASMLIPVIFLSTGLYAL--------PLAAITGSYSLFPPGHMPMVGDMARSVTEATSQTF 172 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII--VY 237 + L+L++PF+ ++ +G+LN+L+P I +Y I+ P + G + L + I+++ V+ Sbjct: 173 ALALQLAAPFVLIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLIQVMTGVW 232 Query: 238 Q 238 Q Sbjct: 233 Q 233 >gi|99082794|ref|YP_614948.1| flagellar biosynthetic protein FliR [Ruegeria sp. TM1040] gi|99039074|gb|ABF65686.1| Flagellar biosynthetic protein fliR [Ruegeria sp. TM1040] Length = 259 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 121/250 (48%), Gaps = 15/250 (6%) Query: 3 ISPEIIMMSLF--------LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL 54 I+PE+ M+LF ++ R+G+ ++ G IP Q+RL + F+ ++ P L Sbjct: 6 ITPEL--MALFGAGFWHAAIVFLRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPAL 63 Query: 55 WDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMG 114 Q + Y+ L+ E+ +G GL +R++ LQ GS+ + +L +G Sbjct: 64 PQMPMPQTVMQ---YAGLMATEVVVGLALGLGLRMFMHMLQTAGSIAAQCT--SLSQVLG 118 Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM 174 + + L +++ I G+ ++DFH +++SY P+G + + V+ Sbjct: 119 GAGADPMPALGAVLWISGIAVAVMLDFHIHAAQLMIRSYDLFPVGIFPSASGLSEWGVHR 178 Query: 175 LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 + TF L++PFL +V+N+++G++N+ + Q+ + F+ P + G L + + Sbjct: 179 VSATFAQAFTLAAPFLITAVVYNLTLGVINRAMTQLMVVFVGAPVITFGGLAILMIGAPM 238 Query: 235 IVYQFSHSFL 244 ++ + H L Sbjct: 239 MLEVWGHGLL 248 >gi|163733156|ref|ZP_02140600.1| flagellar biosynthetic protein FliR [Roseobacter litoralis Och 149] gi|161393691|gb|EDQ18016.1| flagellar biosynthetic protein FliR [Roseobacter litoralis Och 149] Length = 256 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 114/219 (52%), Gaps = 8/219 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F++ CRV + +LP +P +V+L A+AF++++ P L TI N + S + Sbjct: 19 FVVFCRVAALAAVLPAFGEQTLPARVKLAAALAFTLIVAPAL-PTISPPNAIGS--ISLV 75 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E+ G G+ +R++ L LQ GS+ + + L+ D L P I +I Sbjct: 76 ILTEVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLSQVLGGAAVDPL---PAMGYILVIA 132 Query: 133 LLALWVI-DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LAL V+ H +V + ++ SY +P+G+ + ++ + F + L++PF+ Sbjct: 133 GLALAVMAGLHVKVAHLIILSYDFMPVGRFVAAADVSEWGTKQVAQAFSLAFTLAAPFVI 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 +++N ++G +N+ +PQ+ + F+ P +I LG L L L Sbjct: 193 LSVLYNFALGAINRAMPQLMVAFVGAP-VITLGGLALLL 230 >gi|163744324|ref|ZP_02151684.1| flagellar biosynthesis protein R [Oceanibulbus indolifex HEL-45] gi|161381142|gb|EDQ05551.1| flagellar biosynthesis protein R [Oceanibulbus indolifex HEL-45] Length = 251 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 11/239 (4%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +M F++ R+GS ++ +PG + + +P + RL F + S L P + V Sbjct: 11 LMGYFVVFARIGSALLFMPGFAETSVPTRHRLFFGLILSATLYP-----VTGLGPVAEDR 65 Query: 69 YSKLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L+++ E+ +G GL+ R LQF G ++ GL + I T + Sbjct: 66 PGALLLIFGSEITVGLWIGLVARTLLSALQFAGYQMALMSGLANALAPNIGAFEGATSMA 125 Query: 126 SLIGIIGLLAL-WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ +IG AL +V D HH + +L+ SY + I ++ F Q + + L Sbjct: 126 AML-LIGATALIFVTDLHHLIIESLLMSY-QVFIPGTFMLADLTDQFARATQVSLYLGLS 183 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++PF +V N+ +GL N+++ + ++FI+ P LI G + L++ ++ F F Sbjct: 184 IAAPFYVAGLVLNVGMGLANRMMASLQVFFIAQPLLIAAGLALMVLAVPTMMRGFLEPF 242 >gi|259417172|ref|ZP_05741091.1| flagellar biosynthetic protein FliR [Silicibacter sp. TrichCH4B] gi|259346078|gb|EEW57892.1| flagellar biosynthetic protein FliR [Silicibacter sp. TrichCH4B] Length = 259 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 114/224 (50%), Gaps = 15/224 (6%) Query: 3 ISPEIIMMSLF--------LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL 54 I+PE +M+LF ++ R+G+ ++ G IP Q+RL + F+ ++ P L Sbjct: 6 ITPE--LMALFGAGFWHGAIVFLRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPAL 63 Query: 55 WDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMG 114 + + V + Y+ L+ E+ +G GL +R++ LQ GS+ + +L +G Sbjct: 64 -PQMPIPETVMQ--YAGLIATEVVVGLSLGLGLRMFMHMLQTAGSIAAQCT--SLSQVLG 118 Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM 174 + + L +++ I G+ ++DFH +++SY P+G+ + + V+ Sbjct: 119 GAGADPMPALGAVLWISGIAVAVMLDFHIHAAQLMIRSYDLFPVGRFPDAAGLSEWGVHR 178 Query: 175 LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 + TF L++PFL +++N+++G++N+ + Q+ + F+ P Sbjct: 179 VSATFAQAFTLAAPFLITAVIYNLTLGVINRAMTQLMVVFVGAP 222 >gi|302343744|ref|YP_003808273.1| flagellar biosynthetic protein FliR [Desulfarculus baarsii DSM 2075] gi|301640357|gb|ADK85679.1| flagellar biosynthetic protein FliR [Desulfarculus baarsii DSM 2075] Length = 258 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 5/236 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VNRAY 68 M LI+ R + + LLP + IP V+ +MA ++ L P + ID F Sbjct: 12 MHFLLILTRCSALVALLPFFGSANIPDTVKAGLSMALAVFLHPIV--KIDPALFPTGLDS 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L EL +G + G +R+ +Q G + +G ++ + + + Sbjct: 70 FLILAFGELMIGAILGFAVRLLFSAVQIMGHLAGFQMGFSVANVLDPMGGEQVSVIGQFC 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRLSS 187 +I +L + + HH F A +S+ +P GQ F I F M F + L+L + Sbjct: 130 YVIAILVFFAVGGHHWFFSAAAESFAIVPPGQ-FAFSRILFDQLTTMTADMFELALKLGA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G+L K VPQ+ I + P IG+G FL L++ ++ SF Sbjct: 189 PVIGVLLAADVAMGVLAKTVPQMNILIVGMPLKIGVGLFFLALTMGFMIVTMGASF 244 >gi|288958051|ref|YP_003448392.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288910359|dbj|BAI71848.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 256 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 116/216 (53%), Gaps = 11/216 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ RVG+ ++P + +++P + RL FA+A S ++ P + + N LV Sbjct: 17 LVFLRVGTAFSVMPTIGDAFVPTRARLLFALAVSTLVAPTIRPMLPPMPG-NPFQLMVLV 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQ---TSMGISDSLAETPLNSLIG 129 E+ +G G + R+ L+ G++IS GL N Q ++ S SL + L+G Sbjct: 76 AGEMTVGIFLGTIARLLMGALEVAGTIISLQSGLANAQIFNPALASSGSLPGS----LMG 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 +GLL L+ D HH + A+V SY T G + ++ + ++ +FM+ +++S+PF Sbjct: 132 WLGLLLLFATDLHHLLIMAVVDSYATFVPGAAIPVDDMANMVGQLVSKSFMMGVQMSAPF 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIY--FISTPYLIGL 223 L ++F +++GLLNKL PQ+ ++ F S L+GL Sbjct: 192 LITGMLFALALGLLNKLAPQVQVFQLFTSVQVLLGL 227 >gi|258404719|ref|YP_003197461.1| flagellar biosynthetic protein FliR [Desulfohalobium retbaense DSM 5692] gi|257796946|gb|ACV67883.1| flagellar biosynthetic protein FliR [Desulfohalobium retbaense DSM 5692] Length = 260 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 1/226 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L RV + I +P LS P ++R A+ ++++ P + TI NF + Sbjct: 13 SFLLCFIRVAAIIGSMPVLSGGQTPARLRAGLALVLAVIIFPAVDGTIPDINFAPLRLFV 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L E+ LG + G + R+ L QF G+++ +G + ++ + Sbjct: 73 -LGSQEVLLGLMLGFIGRLLFLAAQFGGTILGFQMGFAAANILDPQSQQQIQLMSQFQNV 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L +D HH +L +S+ +P G L+ + S V M F++ L+L++P Sbjct: 132 LASLVFLAVDGHHVFLRSLARSFEVVPPGGGLHLQDAVPSMVAMTGEMFVLGLQLTAPIY 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 I+ + +G+++++ PQ+ + + P IG+ FL LS E IV Sbjct: 192 VILILSDFILGIMSRIFPQLNAFMLKFPINIGVAFFFLGLSAEFIV 237 >gi|126734113|ref|ZP_01749860.1| flagellar biosynthetic protein FliR [Roseobacter sp. CCS2] gi|126716979|gb|EBA13843.1| flagellar biosynthetic protein FliR [Roseobacter sp. CCS2] Length = 259 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 3/223 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + +LF + R+G+ + +LP +P +VRL A+ F++++ P + + + Sbjct: 12 QAALWTLFAVFTRIGAVMAVLPAFGDQPVPTRVRLVLAVMFTLIVAPAVAPSFETVPTAL 71 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A + L M E G G+ +R + L LQ GS+ + + L+ Q G + + + Sbjct: 72 LAGFGILAM-EALTGLFFGIFLRFFILVLQIAGSIAAQSTSLS-QIFGGTAAVDPQPAIG 129 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 ++ + G + H Q ++ +Y +P G L + V + TF L Sbjct: 130 HMLVVSGTALAALSGLHIQAASYMIHTYTLVPFGAGLERSLVAEVGVAEVGRTFGFGFML 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 ++PFL +++N+ +G++N+ +PQ+ + F+ P L G LFL Sbjct: 190 AAPFLIASLIYNVVLGVINRAMPQLMVSFVGAPALTA-GGLFL 231 >gi|107021597|ref|YP_619924.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia AU 1054] gi|116688059|ref|YP_833682.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia HI2424] gi|170731409|ref|YP_001763356.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3] gi|254246636|ref|ZP_04939957.1| Flagellar biosynthesis protein FliR [Burkholderia cenocepacia PC184] gi|105891786|gb|ABF74951.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia AU 1054] gi|116646148|gb|ABK06789.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia HI2424] gi|124871412|gb|EAY63128.1| Flagellar biosynthesis protein FliR [Burkholderia cenocepacia PC184] gi|169814651|gb|ACA89234.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3] Length = 260 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 4/231 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P++V++ A ++V+ P L D+ F + + ++V Sbjct: 21 VRMLALVATAPMVGHAAVPVRVKIGVAAFMALVVAPTLGAMPDVTVFSAQGIW---ILVN 77 Query: 77 LFL-GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 FL G G +++ ++ G I ++GL T S A + + + +LA Sbjct: 78 QFLIGVAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPAMGRFLNAVAMLA 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 +D H QVF AL S+ ++P+ +L + + T F + L LS P + ++ Sbjct: 138 FLAVDGHLQVFAALAASFQSLPVSADLLHAPGWRTLAAFGATVFEMGLLLSLPVVVALLI 197 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI +Y I P + +G L + L I +V SH F G Sbjct: 198 ANLALGILNRAAPQIGMYQIGFPVTLIVGLLLVQLMIPNLVPFVSHLFDMG 248 >gi|325288791|ref|YP_004264972.1| flagellar biosynthetic protein FliR [Syntrophobotulus glycolicus DSM 8271] gi|324964192|gb|ADY54971.1| flagellar biosynthetic protein FliR [Syntrophobotulus glycolicus DSM 8271] Length = 259 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 5/225 (2%) Query: 10 MSLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++LFL++ CR +M+ P +P V+L AMA S+VL P + ++ +Q V+ Sbjct: 11 LTLFLLIFCRWAGMVMIAPVFGARGVPNLVKLGLAMALSVVLYPTVL-SMTVQVPVDTLL 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y L++ E+ +G V GL+I + T +Q G +I IG L ++ + + + + Sbjct: 70 YIGLIIKEVTVGLVIGLVINLLTSVMQTAGELIDYQIGFTLGNTIDPINGMQSPMTGNFL 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + L I+ HH + A+VKSY IP+ L G F ++ ++ + +++ Sbjct: 130 MVLTTMLLLAINAHHLIIAAMVKSYSYIPVNTGILPKGMTF--YIQIVGQVIALGAQIAM 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 P + ++ +GLL+K VPQ+ I+ + P I G L LSI Sbjct: 188 PIFGALFLADVGVGLLSKTVPQLNIFSVIFPVKIIFGLTLLFLSI 232 >gi|188586037|ref|YP_001917582.1| flagellar biosynthetic protein FliR [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350724|gb|ACB84994.1| flagellar biosynthetic protein FliR [Natranaerobius thermophilus JW/NM-WN-LF] Length = 257 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW-DTIDLQNFVNRAYYSKL 72 L++ R+ IM P +Y+P Q+++ F++ ++V LP L + + + +N ++ Sbjct: 16 LLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSDYHIMNVILFA-- 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG--- 129 +EL +G G++ + +Q G +I +G + M D ET + LIG Sbjct: 74 -FMELMVGIAIGMIANLVFSSIQIAGQLIDVQMGFAMARVM---DPQYETQV-PLIGQFK 128 Query: 130 -IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ ++ VI+ HH + ++ +SY +PIG + G + + T F++ +++S+P Sbjct: 129 YILAIMIFLVINGHHLLIRSVYESYQLLPIGNIFDLGAGGVALNELFSTVFVLAIQVSAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L + NI++G+L + VPQ+ ++ I P I +G L L L Sbjct: 189 ALGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVL 230 >gi|94264044|ref|ZP_01287844.1| Type III secretion system inner membrane R protein [delta proteobacterium MLMS-1] gi|94266370|ref|ZP_01290069.1| Type III secretion system inner membrane R protein [delta proteobacterium MLMS-1] gi|93453022|gb|EAT03510.1| Type III secretion system inner membrane R protein [delta proteobacterium MLMS-1] gi|93455555|gb|EAT05742.1| Type III secretion system inner membrane R protein [delta proteobacterium MLMS-1] Length = 263 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 12/230 (5%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +M + +I+ RVG + L+P + +P QV++ + S+VL P + + + + A Sbjct: 14 LMRVVMIMVRVGPLLFLMPVIGAPNVPTQVKILLVLMTSLVLAPMV--PVSAADLPDTAL 71 Query: 69 -YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ V++E+ + L +R ++ G V+ +G+ + M +P+ L Sbjct: 72 GFAHFVILEIVFVAILALFVRFVFAAVETAGQVVGVQMGMGMAGVMDPVFGNQISPVGML 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-----ELNFGNIFSSFVNMLQTTFMIM 182 I +L ID HH F A+V+ Y + GQ +L + + M MIM Sbjct: 132 WNIAAILLFLAIDGHHLFFAAMVQGYQWVGPGQLAAVSQLTYEGMMEGASQMFVLAIMIM 191 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 +S F ++ +G++ K VPQIPI + P I +G +F L++ Sbjct: 192 APVSVALFFSHV----GMGVIAKTVPQIPILIVGMPMNIAIGIVFAGLAM 237 >gi|209963537|ref|YP_002296452.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW] gi|209957003|gb|ACI97639.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW] Length = 251 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 9/245 (3%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T+S EI + L++ RVG+ + +LPG +PM+ R+ A+A ++ L + + Sbjct: 6 TLSGEI--YGVLLVLVRVGAALSMLPGFGEMAVPMRTRMAAALALALALAAAVPGLPAVP 63 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + ++ E G V G+ R+ LQ G +I+ + L+ ++ + Sbjct: 64 P-AGPGELLRHIVGEAMAGAVIGIGARILFAALQIAGQIIAQSASLSNIFALPGTGFEGG 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP---IGQELNFGNIFSSFVNMLQTT 178 + L + + + GL+ ++V D HH + AL+ SY +P I + G + + VN+ + Sbjct: 123 SVLGAYLMMGGLVLVFVTDLHHAMIRALLDSYQLMPAATIPDPRSLGKLTAETVNL---S 179 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 F + ++ S+PFL + +N+ +GL+N+ +P ++F+ P I G + L L I+ Sbjct: 180 FRLAVQFSAPFLLLGLAYNVGLGLVNRAMPHFAVFFVGLPVSILGGFIVLALVAAAILGG 239 Query: 239 FSHSF 243 F +F Sbjct: 240 FLDAF 244 >gi|189426337|ref|YP_001953514.1| flagellar biosynthetic protein FliR [Geobacter lovleyi SZ] gi|189422596|gb|ACD96994.1| flagellar biosynthetic protein FliR [Geobacter lovleyi SZ] Length = 265 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 114/235 (48%), Gaps = 11/235 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY-SKL 72 LI+CR+G LP +P ++++ +A ++V LP L I A+ L Sbjct: 19 LILCRIGGLFAALPVFGGKRLPTRIKIAAVLAITLVCLPVL--KITPPPLPGDAFTLGLL 76 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN----LQTSMGISDSLAETPLNSLI 128 VM E+ +G + ++ ++F+G +I +G + L SMG + + SL+ Sbjct: 77 VMREMLIGLTLAFITQIIFAAVEFSGQIIGLQMGFSISSVLDPSMGTQTQIMSV-VQSLL 135 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L+L + HH A+V S+ IP+G + VN F++ +RL++P Sbjct: 136 ATLFFLSL---NIHHVFISAIVDSFTVIPLGGWKMSEALIHFLVNATSEVFILGIRLAAP 192 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ ++ +G++ + PQ+ ++ +S P IGLG + L +++ + + SF Sbjct: 193 VMVALLLTSVVLGIMARAFPQMNVFMVSFPLNIGLGFMVLGMTLLLFFHVLELSF 247 >gi|297569687|ref|YP_003691031.1| flagellar biosynthetic protein FliR [Desulfurivibrio alkaliphilus AHT2] gi|296925602|gb|ADH86412.1| flagellar biosynthetic protein FliR [Desulfurivibrio alkaliphilus AHT2] Length = 263 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 12/230 (5%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFVNRA 67 +M + +++ RVG + L+P LS +P QV++ + S+VL P + + DL + Sbjct: 14 LMRVLIVMTRVGPLLFLMPVLSARGVPAQVKILLVVMTSLVLAPVVPVSSADLPD--TAV 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +E+ + L R ++ G V+ +G+ + M +P+ L Sbjct: 72 GFGVFAALEITFAAILALFARFVFSAVETAGQVVGVQMGMGMAGVMDPQFGNQVSPVGML 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-----ELNFGNIFSSFVNMLQTTFMIM 182 + +L ID HH F A+V+SY + GQ L + + M IM Sbjct: 132 WSVAAILLFLAIDGHHLFFAAMVRSYQWVGPGQLAAVSHLTYQGMMDGAAQMFVLAIKIM 191 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 S+ F + + +G++ K VPQIPI + P I LG + LS+ Sbjct: 192 APASATLFFSH----VGMGIIAKTVPQIPILIVGMPMNIALGMMMAGLSM 237 >gi|148266207|ref|YP_001232913.1| flagellar biosynthetic protein FliR [Geobacter uraniireducens Rf4] gi|146399707|gb|ABQ28340.1| flagellar biosynthetic protein FliR [Geobacter uraniireducens Rf4] Length = 261 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 116/232 (50%), Gaps = 5/232 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKL 72 L+V R+ +P +P++V+ M +++L P + I L + + S L Sbjct: 18 LVVGRMAGLFAAIPLFGSKSVPVRVKAAVIMVMALLLYPVIRTQIPPLPS--DSISLSLL 75 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI-GII 131 V+ E +G G++ + ++F G ++ +G+++ S+ ++ A P +L+ GI+ Sbjct: 76 VVRETLIGLTIGIISQAIFAAVEFCGQIVGMQMGISM-ASLFDPNTQANVPTVALLQGIL 134 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L + HH A+V+SY IP+G G + + F++ ++LS+P + Sbjct: 135 AMLLFLSLGVHHIFIRAIVESYRVIPVGAWHMSGGLMQFIITTTGAIFILAIKLSAPIMV 194 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++++G++ + PQ+ I+ +S P IG+G L L LS+ + ++F Sbjct: 195 ALLATSVALGIMARSFPQMNIFMVSMPLNIGIGFLALGLSLLTFLRTLENAF 246 >gi|260431742|ref|ZP_05785713.1| flagellar biosynthetic protein FliR [Silicibacter lacuscaerulensis ITI-1157] gi|260415570|gb|EEX08829.1| flagellar biosynthetic protein FliR [Silicibacter lacuscaerulensis ITI-1157] Length = 257 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 115/233 (49%), Gaps = 7/233 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV-NRAYYSK 71 F++ RV + + LLP +P +V+L A+AFS+V+ P + ++ A + Sbjct: 20 FVVFLRVSAVVSLLPAFGERSVPTRVKLGVAVAFSLVVAP----AVQIEPLAPGMAAMVR 75 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E +G + G+ +R++ L LQ GSV + + L+ +D L + L+ + Sbjct: 76 VITAETLIGLILGVGLRLFVLALQTAGSVAAQSTSLSQILGGAAADPLPA--MGYLLTLA 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 GL +++ H + LV SY P G ++ V + +F + L++PF+ Sbjct: 134 GLALAVLLNLHVRAAQFLVHSYMLFPAGIVPAASDVSQWGVAQIAHSFSLAFGLAAPFVI 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +++N+++G++N+ +PQ+ + FI P + G L II+ +S + L Sbjct: 194 ASLIYNLALGVINRAMPQLMVAFIGAPAITFAGLFLLFAGTPIILSVWSDALL 246 >gi|163738054|ref|ZP_02145470.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis BS107] gi|161388670|gb|EDQ13023.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis BS107] Length = 259 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 115/232 (49%), Gaps = 8/232 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ + +LP Y+P +++L ++AF++++ L + +Y L + E Sbjct: 27 RIGAMVSVLPAFGEKYVPARIKLAISLAFTLIVA---PALPILPPPASPLHYGSLALSEA 83 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G+ IR++ +Q G++ + + L Q GI P + +I LAL Sbjct: 84 VVGLALGMAIRMFVHAIQIAGTIAAQSTSLA-QVLGGIGAE--PMPAIGAVLLISGLALA 140 Query: 138 V-IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 V + H +V ++ SY P+G+ + + V+ + +F + L++PFL +V+ Sbjct: 141 VMLGLHIRVAEFMIYSYMMFPVGEFPSASGLSDWGVHRVSRSFAMGFSLAAPFLIGSMVY 200 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 N+++G++N+ +P + + F+ P ++ G L + + ++ + L GFF Sbjct: 201 NLTLGVINRAMPALMVAFVGAP-VVTFGGLAILMVASPMILDIWSTALMGFF 251 >gi|222053618|ref|YP_002535980.1| flagellar biosynthetic protein FliR [Geobacter sp. FRC-32] gi|221562907|gb|ACM18879.1| flagellar biosynthetic protein FliR [Geobacter sp. FRC-32] Length = 260 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 116/239 (48%), Gaps = 19/239 (7%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--------WDTIDLQNFVN 65 L+V R+ +P +PM++++ M+ +++L P + D+I + V Sbjct: 17 LVVGRMAGLFSAIPLFGGKSVPMRIKMAVIMSMALLLFPIIKMQVPPLPGDSISIGLLVI 76 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 R E +G G++ + ++ G ++ +G+++ ++ ++ + P Sbjct: 77 R---------ETLIGLTLGIISQAIFAAVEMCGQIVGMQMGISI-AALFDPNTQSNVPTM 126 Query: 126 SLI-GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 SL GI+ +L + HH A+V+SY IP+G G + F+ + F++ ++ Sbjct: 127 SLFQGILAMLLFVALGVHHIFIRAIVESYQVIPVGAWHMSGELMQFFITSIGAVFILGVK 186 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L++P + + ++++G++ + PQ+ I+ +S P IG+G L L LS+ + +SF Sbjct: 187 LAAPVMVALLATSVALGIMARAFPQMNIFMVSMPLNIGIGFLALGLSLLAFLRTLQNSF 245 >gi|188581881|ref|YP_001925326.1| flagellar biosynthetic protein FliR [Methylobacterium populi BJ001] gi|179345379|gb|ACB80791.1| flagellar biosynthetic protein FliR [Methylobacterium populi BJ001] Length = 258 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 110/209 (52%), Gaps = 1/209 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L RVG+ +ML+PGL I ++RL A+ ++VLLP + + + A Sbjct: 15 AFLLTFARVGTLMMLMPGLGEQLIAARLRLALALLMTLVLLPTVRPLLPTGSGALAAPSV 74 Query: 71 -KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L+ E+ +G + GL +R+ LQ G+VIS +GL+ ++ + + + + + Sbjct: 75 IGLLFGEILIGLMLGLCVRMILAALQTAGTVISQQLGLSYAMTVDPTMGGQQAAIGNFLA 134 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++G+ + D HH A+ +SY +P + ++ F + +R+S PF Sbjct: 135 LLGVTLILATDLHHVALEAIGRSYVLLPPSGVPAMADAAKLALDAFSRGFALAVRISGPF 194 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 + F I+FN+ +G+L++L+PQ+ ++F++ P Sbjct: 195 IVFGILFNLGLGVLSRLMPQLQVFFLAVP 223 >gi|163742550|ref|ZP_02149936.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis 2.10] gi|161384135|gb|EDQ08518.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis 2.10] Length = 259 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 116/236 (49%), Gaps = 8/236 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ R+G+ + +LP Y+P +++L ++AF+ ++ L + +Y L Sbjct: 23 IVFLRIGAMVSVLPAFGEKYVPARIKLAISLAFTFIVA---PALPILPPPASPLHYGSLA 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E +G G+ IR++ +Q G++ + + L Q GI P + +I Sbjct: 80 LSEAVVGLALGMAIRMFVHAIQIAGTIAAQSTSLA-QVLGGIGAE--PMPAIGAVLLISG 136 Query: 134 LALWV-IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LAL V + H +V ++ SY P+G+ + + V+ + +F + L++PFL Sbjct: 137 LALAVMLGLHIRVAEFMIYSYMMFPVGEFPSASGLSDWGVHRVSRSFAMGFSLAAPFLIG 196 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 +V+N+++G++N+ +P + + F+ P ++ G L + + ++ + L GFF Sbjct: 197 SMVYNLTLGVINRAMPALMVAFVGAP-VVTFGGLAILMVASPMILDIWSTALMGFF 251 >gi|83814762|ref|YP_446684.1| flagellar biosynthetic protein FliR [Salinibacter ruber DSM 13855] gi|294508620|ref|YP_003572679.1| flagellar biosynthetic protein FliR [Salinibacter ruber M8] gi|83756156|gb|ABC44269.1| flagellar biosynthetic protein FliR [Salinibacter ruber DSM 13855] gi|294344949|emb|CBH25727.1| flagellar biosynthetic protein FliR [Salinibacter ruber M8] Length = 258 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 107/219 (48%), Gaps = 6/219 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ + L+ RV ++ P IP++VR+ ++ + L F + ++ + Sbjct: 9 ILRVLLVFVRVSGLMLAAPFFQQKTIPVRVRVLASVVLAYSLAGFATGPLP-EHVTHDVG 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + +V+VE G V G R+ + F G+++ + L+L + + PL ++ Sbjct: 68 FMLVVLVEAGTGLVMGFTARIIFWAVSFAGTIMGYQMALSLAQTYNPISGTSSNPLGQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 LLA + D HH + AL +S+ +P+ G EL+ + + F + +RL++ Sbjct: 128 SYTFLLAFLLADGHHFLLRALAQSFEVVPLGGAELSGAG--PPMLGWMGDFFRLAVRLAA 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLG 224 PFL + +I++G+ +LVPQ ++ +S P L+G+G Sbjct: 186 PFLVILFLTDIALGIFARLVPQANLFTLSLPAKLLVGIG 224 >gi|39995533|ref|NP_951484.1| flagellar biosynthesis protein FliR [Geobacter sulfurreducens PCA] gi|39982296|gb|AAR33757.1| flagellar biosynthesis protein FliR [Geobacter sulfurreducens PCA] gi|298504534|gb|ADI83257.1| flagellar biogenesis protein FliR [Geobacter sulfurreducens KN400] Length = 264 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/230 (22%), Positives = 110/230 (47%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ +P +P ++ A ++V P + + + Q + L+ Sbjct: 19 LVMGRMAGIFAAIPIFGGRRVPTPIKALLVFAMTMVCFPIIKEKMP-QLPTDVLSLGFLM 77 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G GLL + ++F G ++S IGL + T S + ++ ++ ++ Sbjct: 78 VQEVLVGVSLGLLSLIIFAAVEFAGQIVSVQIGLTIVTEFDPSQGGQLSIMSIILEMLAT 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L + HH ALV+SY +P+G G + V + F++ +RL++P + Sbjct: 138 LLFLSLGMHHIFIGALVQSYDVLPLGAWHMSGALLQFIVTTIGEVFVLAVRLAAPVMVTL 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ +G++ + PQ+ ++F+S P IG+G + L LS+ + ++ F Sbjct: 198 LATSVMLGIMARSFPQMNVFFVSMPLNIGIGFIVLGLSLPLFLHTVQGHF 247 >gi|83589640|ref|YP_429649.1| flagellar biosynthesis protein FliR [Moorella thermoacetica ATCC 39073] gi|83572554|gb|ABC19106.1| flagellar biosynthetic protein FliR [Moorella thermoacetica ATCC 39073] Length = 255 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 90/175 (51%) Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y+ V+ E G G L + +Q G ++ +GL + T ++ + T + Sbjct: 65 YALAVLNESLAGLALGYLASLIFSAIQMAGQLLDIHMGLAMATLFDPQNAASTTIMGQFF 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+GLL + +D HH + AL +S+ +P+G GN+ + V + TF + L++++P Sbjct: 125 AILGLLLFFQLDGHHTLLLALQESFRLLPLGGVHFDGNLLWAVVKLFAGTFALALQIAAP 184 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ ++++ L+ + VPQ+ ++ + P +GLG L + + ++ FS+ F Sbjct: 185 LIAVLLIADLALSLVARTVPQLNVFILGFPLKVGLGLLVMIALLPLLATVFSNIF 239 >gi|260886651|ref|ZP_05897914.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC 35185] gi|330839518|ref|YP_004414098.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC 35185] gi|260863794|gb|EEX78294.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC 35185] gi|329747282|gb|AEC00639.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC 35185] Length = 260 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 102/217 (47%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ RV ++ P IP +R+ A+AFS VL P + + N Y+ Sbjct: 16 LVLTRVTGIFVIAPFFGSLNIPAHIRVGTAVAFSFVLFPIVDSYGPVSAPDNVFLYAAAA 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 ELF+G + G + V + F G V+ +G + M + + S + + + Sbjct: 76 AGELFVGWLIGFVAYVTFSAIHFAGKVMDMQVGFAMVNVMDPTSGQQIPLIGSFLYNLAI 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + V++ HH + AL +S+ ++P+ N+ VN++ F+ ++L+ P F Sbjct: 136 IVFLVVNGHHMLIAALFESFQSVPMMGLSPSPNLAGFVVNLVNGVFVTGMKLAMPVTFSI 195 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++ N+ +G+L + +PQ+ I+ + P I +G L + Sbjct: 196 LLTNVGLGILARTMPQLNIFVVGLPLQIVIGMFVLSI 232 >gi|171316885|ref|ZP_02906094.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MEX-5] gi|171097966|gb|EDT42784.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MEX-5] Length = 260 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 111/230 (48%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P++V++ A ++V+ P L D+ F + + +V+ + Sbjct: 21 VRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAQGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G GL +++ ++ G I ++GL T + A + + I +LA Sbjct: 79 FLIGVALGLTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGRFLNAIAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QVF AL S+ T+P+ +L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 199 NLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 >gi|110677563|ref|YP_680570.1| flagellar biosynthetic protein FliR [Roseobacter denitrificans OCh 114] gi|109453679|gb|ABG29884.1| flagellar biosynthetic protein FliR [Roseobacter denitrificans OCh 114] Length = 256 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 111/219 (50%), Gaps = 8/219 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F++ CRV + +LP + +V+L A+AF++++ P L I + + + Sbjct: 19 FVVFCRVAALAAVLPAFGEQTLSARVKLAAALAFTVIVAPAL-PIIPAPGSIGAVSF--V 75 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E+ G G+ +R++ L LQ GS+ + + L+ D L P I +I Sbjct: 76 ILTEVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLSQVLGGAAVDPL---PAMGYILVIA 132 Query: 133 LLALWVI-DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LAL V+ H +V ++ SY +P+G+ N ++ + + F + L++PF+ Sbjct: 133 GLALAVMAGLHVKVAQLIILSYDFMPVGRFANAADLSEWGTSQVAHAFSLAFTLAAPFVI 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 +++N ++G +N+ +PQ+ + F+ P +I LG L L L Sbjct: 193 LSVLYNFALGAINRAMPQLMVAFVGAP-VITLGGLALLL 230 >gi|78224287|ref|YP_386034.1| flagellar biosynthesis protein FliR [Geobacter metallireducens GS-15] gi|78195542|gb|ABB33309.1| Flagellar biosynthesis protein FliR [Geobacter metallireducens GS-15] Length = 264 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 110/230 (47%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ +P +PM +++ A ++V P + I Q + L+ Sbjct: 19 LVLGRMAGIFAAIPLFGGRRVPMNIKVLAIFALTVVCFPLIKAKIP-QLPADMLSLGMLM 77 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E +G GLL + ++F G + +GL++ + + S + ++ + Sbjct: 78 IREALVGTCLGLLSLIIFAAVEFCGQICGIQMGLSIVSEIDPSRGSQLSIISIFQEMFAT 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L ++ HH ALV+SY +P+G + + V + F++ ++LS+P + Sbjct: 138 LLFLSLNVHHVFINALVESYAVLPVGAWTMSEGLLNFLVVTIGQVFILAIKLSAPIMVTL 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ ++ +G++ + PQ+ ++F+S P IG+G + L LS+ + ++ SF Sbjct: 198 LLTSVMLGIMARAFPQMNVFFVSMPLNIGIGFIILGLSLTVFLHTLRGSF 247 >gi|56695094|ref|YP_165441.1| flagellar biosynthetic protein FliR [Ruegeria pomeroyi DSS-3] gi|56676831|gb|AAV93497.1| flagellar biosynthetic protein FliR [Ruegeria pomeroyi DSS-3] Length = 257 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 116/225 (51%), Gaps = 15/225 (6%) Query: 2 TISPEIIMM------SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW 55 + PE++ + LF + RV + + +LP IPM+VRL A AF++++ P Sbjct: 3 ALPPELLALISGELWQLFAVFLRVSALVSVLPAFGEQSIPMRVRLGVAAAFAVIVAPATP 62 Query: 56 DTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGI 115 ++ N + ++ L E G V GL IR++ + LQ G + + A L S + Sbjct: 63 QAPEITNVLQ---FAMLAGTEALAGLVMGLGIRLFAMALQVAGMIAAQATSL----SQLL 115 Query: 116 SDSLAE-TPLNSLIGIIGLLALWVID-FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN 173 +++AE TP + ++ LAL V+ H +V L+ SY PIG+ + G++ V Sbjct: 116 GNAVAEPTPAMGHLLMMDGLALAVMSGLHVRVAEFLIHSYTIFPIGKLPHPGDLSQWGVA 175 Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 + F + L++PF+ +++N+++G +N+ +PQ+ + F+ P Sbjct: 176 QIGRMFALAFALAAPFVIASLIYNLALGAINRAMPQLMVAFVGAP 220 >gi|91791411|ref|YP_561062.1| type III secretion system inner membrane R protein [Shewanella denitrificans OS217] gi|91713413|gb|ABE53339.1| type III secretion system inner membrane R protein [Shewanella denitrificans OS217] Length = 261 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 10/228 (4%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CRVG L MS IP +R I L ++ +N Y L+ +E Sbjct: 27 CRVGIVFWLPLVGPMSRIPTSIRFIIVNVIVIALFSLQGAPAVIEVDLNTRSYLTLLAIE 86 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII----G 132 G L++ V + L F G I IGL + GI + ++T +SL+G++ Sbjct: 87 FITGITFSLILAVPAVVLLFFGRAIDMQIGLG---ASGIFNPTSQTQ-DSLLGVLFSFAA 142 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L W + H V L++S +P+GQ N + F+ T F++ L L +P + Sbjct: 143 LTLFWSLGLHLDVLKILIESIKVLPLGQTRNVEAMV--FIEYFSTAFVLGLILFAPVIIM 200 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + +I G+++K +PQ+ IYF+ P I +G + L +++ + F Sbjct: 201 LFIVDICSGIISKSMPQMSIYFVIMPLKIMIGFIVLTITLTNLASHFE 248 >gi|254477385|ref|ZP_05090771.1| flagellar biosynthetic protein FliR [Ruegeria sp. R11] gi|214031628|gb|EEB72463.1| flagellar biosynthetic protein FliR [Ruegeria sp. R11] Length = 259 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 15/210 (7%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLP----FLWDTIDLQNFVNRAYY 69 ++ RV + + +LP Y+P++V+L A+AF+ V+ P F LQ Y Sbjct: 23 IVFLRVSAMVAMLPAFGEQYVPVRVKLAIALAFTFVVAPALPLFPAPDTPLQ-------Y 75 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + E +G G+ IR++ +Q G++ + + L Q GI P + Sbjct: 76 AGYAASEAIIGLALGVGIRLFIHAIQTAGTIAAQSTSLA-QVLGGIGAE--AMPAIGAVL 132 Query: 130 IIGLLALWV-IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +I LAL V + H + ++ SY P+G+ + V+ + F + L++P Sbjct: 133 LISALALAVMLGIHVRAAEFMIYSYMMFPMGEFPAAMGLSDWGVHRISRAFSLGFSLAAP 192 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 FL +++N+++G++N+ +PQ+ + F+ P Sbjct: 193 FLIGALIYNLTLGVINRAMPQLMVAFVGAP 222 >gi|89895722|ref|YP_519209.1| hypothetical protein DSY2976 [Desulfitobacterium hafniense Y51] gi|219670146|ref|YP_002460581.1| flagellar biosynthetic protein FliR [Desulfitobacterium hafniense DCB-2] gi|89335170|dbj|BAE84765.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540406|gb|ACL22145.1| flagellar biosynthetic protein FliR [Desulfitobacterium hafniense DCB-2] Length = 260 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 12/224 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ R IML P +P V+L A++ SI+L P + Q Y+ L+ Sbjct: 16 LILSRWAGMIMLAPVFGARGVPAMVKLGLAVSISIILYPLIMAA-GPQIPSETLPYAALL 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G V G +I T L+ G +I +G N+ ++ + + + I+ + Sbjct: 75 IKEIVVGLVIGFVIYAITAVLEGAGQLIDMQMGFNMSGAIDPIFGVQSAMMGNFQMILAI 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIG-----QELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L + HH + A+VKSY +PI Q LN+ ++ +++ F + ++L+ P Sbjct: 135 MLLLATNSHHYLIAAMVKSYTYVPINPGALPQGLNY------YIFLIREIFTLSVQLALP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 + ++ +I +GLL + VPQ+ I+ + P I G L L I Sbjct: 189 VIGALVLTDIGVGLLMRTVPQMNIFTVIFPVKIIFGFTILFLGI 232 >gi|325981179|ref|YP_004293581.1| flagellar biosynthetic protein FliR [Nitrosomonas sp. AL212] gi|325530698|gb|ADZ25419.1| flagellar biosynthetic protein FliR [Nitrosomonas sp. AL212] Length = 265 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 5/218 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV- 75 R+ + I P L P++V+L A+ +I++LP + ++ ++ A LV++ Sbjct: 21 SRILALIASAPILGNPSTPVRVKLGLAIMITILILPLVEKSLPQ---IDPASGIGLVILL 77 Query: 76 -ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G G ++RV + ++ G +I +GL +S + +G+I L Sbjct: 78 QQILIGAAIGFVMRVVFVAVEMAGELIGLQMGLGFAIFFDPQNSGQIDIIGRFLGVIASL 137 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 A +D H + + +S+ T+PIG F++ N F L+LS P L + Sbjct: 138 AFLAMDGHLLMIALISQSFSTLPIGSAALTDVTFTTLANWGGEIFKSGLQLSLPVLTALL 197 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 + NI++G+L ++ PQ+ I+ + P + +G L L LS+ Sbjct: 198 ITNIALGILTRVAPQLNIFAVGFPLTLAIGFLVLGLSM 235 >gi|170698075|ref|ZP_02889156.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria IOP40-10] gi|170137036|gb|EDT05283.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria IOP40-10] Length = 260 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 110/230 (47%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P++V++ A ++V+ P L D+ F + + +V+ + Sbjct: 21 VRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAQGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T + A + + I +LA Sbjct: 79 FLIGVALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGRFLNAIAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QVF AL S+ T+P+ +L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 199 NLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 >gi|118581842|ref|YP_903092.1| flagellar biosynthetic protein FliR [Pelobacter propionicus DSM 2379] gi|118504552|gb|ABL01035.1| flagellar biosynthetic protein FliR [Pelobacter propionicus DSM 2379] Length = 264 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/240 (22%), Positives = 115/240 (47%), Gaps = 7/240 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EII+ +L ++ R+ LP +P+Q+R+ MA S++ P L ++ N + Sbjct: 12 EIILFAL--VLGRMAGMFSALPVFGGKRLPLQIRVVAVMAMSLICFPLL--NVNAPNIPD 67 Query: 66 RA-YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + L + E+ +G + ++ ++F+G +I +G + M + + Sbjct: 68 DTISLALLALREVMIGITLSFVTQIIFSAVEFSGQIIGMQMGFTMAAIMDPTHGTQSQVM 127 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIML 183 + + ++ L + HH A+V S+ IP+G LN G I + F++ + Sbjct: 128 SVMQSLLATLMFLCMSIHHLFIRAIVDSFHIIPLGVWHLN-GEIITFLTRATADVFVLGV 186 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 RL++P + ++ ++++G++ + PQ+ ++ IS P IG+G + L ++ + + SF Sbjct: 187 RLAAPVMVALLLTSVTLGIMARSFPQMNVFMISFPLNIGIGFIILGATLPMFFHVLEVSF 246 >gi|254512033|ref|ZP_05124100.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium KLH11] gi|221535744|gb|EEE38732.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium KLH11] Length = 256 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 123/257 (47%), Gaps = 29/257 (11%) Query: 1 MTISPEII------MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL 54 +T+ PE++ + LF + RV + + LLP IP++V+ A AF++++ P + Sbjct: 2 ITLPPELLPYLGQNLWHLFAVFLRVSALVSLLPAFGERSIPVRVKFGLAAAFTLIIAPAV 61 Query: 55 WDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMG 114 L F L+ E+ +G G+ +R++ L LQ GS+ + A L+ Sbjct: 62 PAAGPLPGFPGMV---GLIGSEILVGLAFGIALRLFVLALQTAGSIAAQATSLSQ----- 113 Query: 115 ISDSLAETPLNSL---IGIIGLLALWVIDFHHQVFYALVKSY-----GTIPIGQELN-FG 165 I A P+ ++ + + GL ++ H +V SY GT+P +L+ +G Sbjct: 114 ILGGAAVEPVPAMGYFLTLSGLALAALLGLHIHAAQFMVHSYMLFPPGTVPAAPDLSQWG 173 Query: 166 NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGS 225 V + +F + L++PF+ +++N+++G++N+ +PQ+ + F+ P + G Sbjct: 174 ------VTQITRSFGMAFALATPFVIASLIYNLALGVINRAMPQLMVAFVGAPAITFAGL 227 Query: 226 LFLCLSIEIIVYQFSHS 242 L +I+ +S + Sbjct: 228 FLLFAGTPLILSVWSDA 244 >gi|187925752|ref|YP_001897394.1| flagellar biosynthetic protein FliR [Burkholderia phytofirmans PsJN] gi|187716946|gb|ACD18170.1| flagellar biosynthetic protein FliR [Burkholderia phytofirmans PsJN] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 108/230 (46%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P L +P++V++ A +I++ P L + F + +++ + Sbjct: 21 VRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQVTVFSAEGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G+ +++ + TG + +GL T + + L+S + I +L Sbjct: 79 FLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDAQAASSSQVLSSYMNTIAMLVF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 VID H Q+ AL+ ++ ++P+ + + + N T F L LS P + ++ Sbjct: 139 LVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGSTVFSAGLLLSLPVVAALLIT 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+S+G+LN+ PQI ++ I P + +G L L L + ++ F+ F G Sbjct: 199 NLSLGILNRAAPQIGVFQIGFPLTMLIGMLLLQLMVPNMIPFFTRLFEVG 248 >gi|78064696|ref|YP_367465.1| flagellar biosynthesis protein FliR [Burkholderia sp. 383] gi|77965441|gb|ABB06821.1| Flagellar biosynthesis protein FliR [Burkholderia sp. 383] Length = 260 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 110/230 (47%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P++V++ A ++V+ P L D+ F + + +++ + Sbjct: 21 VRMLALVATAPVVGHAAVPVRVKIGLAAFMALVVAPTLGAMPDVTVFSAQGIW--ILVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T S A + + + +LA Sbjct: 79 FLIGAAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHTSGATPVMGRFLNAVAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QVF AL S+ ++P+ +L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVFAALTASFQSLPVSADLLHAPGWRTLAGFGTTVFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI ++ I P + +G L + L I +V +H F G Sbjct: 199 NLALGILNRAAPQIGVFQIGFPVTMLVGLLLVQLMIPNLVPFVAHLFDMG 248 >gi|172059102|ref|YP_001806754.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MC40-6] gi|171991619|gb|ACB62538.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MC40-6] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P++V++ A ++V+ P L D+ F + +V+ + Sbjct: 21 VRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAPGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T + A + + I +LA Sbjct: 79 FLIGVALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGRFLNAIAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QVF AL S+ T+P+ +L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 199 NLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 >gi|114799957|ref|YP_759005.1| flagellar biosynthetic protein FliR [Hyphomonas neptunium ATCC 15444] gi|114740131|gb|ABI78256.1| flagellar biosynthetic protein FliR [Hyphomonas neptunium ATCC 15444] Length = 237 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 90/161 (55%), Gaps = 9/161 (5%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGIS-DSLAETPLNSLIGIIGLL 134 E+ +G G L+R+ L G+VI+ +IGL +G++ + A+T ++++ + G Sbjct: 66 EVVIGFGLGALLRLSVWMLTIAGTVIAQSIGL--AQFLGVALEHEAQTVTSNMLSLAGTT 123 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L ++H V L++ Y IP+G+ ++++ IF SF + + M L+ PF+ Sbjct: 124 ILLTANYHVAVVDGLMRLYTEIPLGEVGQVSWPMIFDSFYSAMGFALM----LAWPFVAA 179 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 +++NI +G +NK +P + + F+ P+++G G + L +S+ Sbjct: 180 NLLYNICLGFINKALPSLMVAFVGAPFMVGAGVMLLAISVS 220 >gi|294675614|ref|YP_003576229.1| flagellar biosynthetic protein FliR [Rhodobacter capsulatus SB 1003] gi|294474434|gb|ADE83822.1| flagellar biosynthetic protein FliR [Rhodobacter capsulatus SB 1003] Length = 258 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 113/233 (48%), Gaps = 16/233 (6%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F++ RVG + ++P +P +V+L AF+++++P FVN S Sbjct: 20 FIVFLRVGGTMAVMPAFGEMMVPTRVKLGLTFAFTLIVMP------GALPFVNAPDTSLP 73 Query: 73 VMV----ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 V V E+ +G GL++R++ L LQ G++ + + +L G + + + L+ Sbjct: 74 VAVWMFAEIVIGLFIGLMLRLFVLCLQIAGTIAAQST--SLSQLFGGTTGEPQPAVGELL 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSF-VNMLQTTFMIMLRLSS 187 + GL + H +V + SY +P G + ++F + + + F + +++ Sbjct: 132 VLAGLAIAVHLGLHVKVTEIFLGSYQALPPGAFPD-ADLFRQWGLGGISRAFALGFSIAA 190 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLSIEIIVYQ 238 PF+ +++N+++G +N+ +PQ+ + I P L GL L + L ++V+ Sbjct: 191 PFVIAGLIYNVALGAINRAMPQLMVSMIGAPAQTLGGLALLMIALPTGLLVWN 243 >gi|304321149|ref|YP_003854792.1| Flagellar biosynthesis pathway, component FliR [Parvularcula bermudensis HTCC2503] gi|303300051|gb|ADM09650.1| Flagellar biosynthesis pathway, component FliR [Parvularcula bermudensis HTCC2503] Length = 256 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 17/211 (8%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 I R+ + ++LLPGL IP++VRL + + +LP + D + A LV+ Sbjct: 23 IFARLTAMLVLLPGLGQLAIPVRVRLMAGLVMTSTILPVILD----RPLPALAISDPLVL 78 Query: 75 V--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII- 131 + E+ +G G R++ L G++++ + L+ G++ T N +G++ Sbjct: 79 IVFEVVIGAALGYGFRIFIWALSIAGTIVAQSASLSQLFGAGLN-----TEPNPSVGLLL 133 Query: 132 ---GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSS 187 G ++FH + + +SY P+G EL ++ + + + F + + LS Sbjct: 134 TMAGATLFMTMEFHVRAVGLIAESYELFPLG-ELPRTDVLAEWATHRAMAAFALGVSLSL 192 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 PFL ++NI +G++N+ +PQ+ + FI P Sbjct: 193 PFLLVNFLYNIVLGMMNQAMPQMMVTFIGVP 223 >gi|32266203|ref|NP_860235.1| flagellar biosynthesis protein FliR [Helicobacter hepaticus ATCC 51449] gi|32262253|gb|AAP77301.1| flagellar biosynthetic protein FliR [Helicobacter hepaticus ATCC 51449] Length = 258 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 3/235 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R G P I + +R S+ P T+ V + Sbjct: 18 LLIARFGGVFAFFPFFDNQLISIHIRAAMVFFMSVAFFPLATYTLPDMTMVE---FLIAA 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ LG + + +++ L F G +IS +G + ++ + + LI IIGL Sbjct: 75 LFEIMLGFIASVCLQIVFAMLSFGGEIISFTMGFTMASAYDPVSGTQKPIIAQLIAIIGL 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L +DFHH +F + S P+G + + FV F + ++ P L Sbjct: 135 LVALSLDFHHTIFLIISHSIEATPLGGFVFEPKSAAYFVKAFSNIFAVGFSMAFPILAII 194 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 ++ +I G++ K PQ + I P I + + L L+I I+Y F + FF Sbjct: 195 LLSDIIFGMIMKTHPQFNLLVIGFPVKIAIAFVVLVLTISTIMYTFKNELKNAFF 249 >gi|115350083|ref|YP_771922.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria AMMD] gi|115280071|gb|ABI85588.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria AMMD] Length = 260 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P++V++ A ++V+ P L D+ F + +V+ + Sbjct: 21 VRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAPGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T + A + + I +LA Sbjct: 79 FLIGIALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGRFLNAIAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QVF AL S+ T+P+ +L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 199 NLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 >gi|229827382|ref|ZP_04453451.1| hypothetical protein GCWU000182_02770 [Abiotrophia defectiva ATCC 49176] gi|229788320|gb|EEP24434.1| hypothetical protein GCWU000182_02770 [Abiotrophia defectiva ATCC 49176] Length = 260 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL-LPFLWDTIDLQNFVNRAYYSKLV 73 IV RV + + P + IP Q+++ F + FS +L L + + + ++ +V Sbjct: 18 IVTRVSAFVFTSPFFNFGSIPRQLKVAFTLIFSALLYLTLPYTEVRYPGIIG---FTFMV 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 M E G + G + L FTG +I IG + T + + +L + Sbjct: 75 MSEALAGGMLGYFTNIVMTILNFTGRLIDMEIGFAMVTMFDPVFKVDTSVSGNLYNYFTI 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L L + +FHH A V +Y IPIG+ + N + + L F+I +RL P Sbjct: 135 LLLLIGNFHHYFLAAFVDAYKVIPIGRAMVNANTVNVIADFLGNYFLIAMRLMLPIYATM 194 Query: 194 IVFNISIGLLNKLVPQIPIYF--ISTPYLIGLGSLFLCLSI 232 ++ N +G++ K+ PQ+ ++ I L+GL + L S+ Sbjct: 195 LLVNAVLGVMAKVAPQMNMFVVGIQLKLLVGLAVMVLMTSM 235 >gi|146312187|ref|YP_001177261.1| flagellar biosynthesis protein FliR [Enterobacter sp. 638] gi|145319063|gb|ABP61210.1| flagellar biosynthetic protein FliR [Enterobacter sp. 638] Length = 264 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + IM P LS IP +V++ M + V+ P L +++ F +A + L Sbjct: 17 FWPLLRVMALIMTAPILSEKSIPKRVKIGLGMLITFVIAPTL-PPVNVPIFSPQAIW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G +++ ++ G +I +GL+ T L L +I ++ Sbjct: 74 ALQQVLIGVAIGFTMQLAFAAIRTAGELIGLQMGLSFATFFDPGSHLNMPVLARVIDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISMLVDTFHTLPIGGNPVNSNAFLALTRAAGLIFINGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+S+GLLN++ PQ+ ++ I P + +G + + L + +I H F Sbjct: 194 LLTVNLSLGLLNRMAPQLSVFVIGFPITLTVGLILMGLLMPLIAPFCEHLF 244 >gi|157363488|ref|YP_001470255.1| flagellar biosynthetic protein FliR [Thermotoga lettingae TMO] gi|157314092|gb|ABV33191.1| flagellar biosynthetic protein FliR [Thermotoga lettingae TMO] Length = 258 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 5/237 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ L+V R + P + ++P+QV++ + S +LP + + I L V Sbjct: 8 ETKFLAWVLVVTRNAGMFTIAPFFADWFVPLQVKVLLVVFLSWTVLPSINEVIPLHTPVA 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + S L +G G L + + L G V T +G L + E P++ Sbjct: 68 QIVLSMLS--NYVIGLTIGFLALLPVIALSIAGEVFGTQMGFALSSVF--DPQREEVPIH 123 Query: 126 -SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 L+ + GL + H ++ A+V S +IP+ + L N S + F I ++ Sbjct: 124 GELLYVFGLYIFVALKGHLLIYQAVVDSLNSIPVSKTLIDFNFVSVLTEKISEMFSIAMK 183 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + P + F V +IS+G++++LVPQ+ ++ + P I +G + + I + FS Sbjct: 184 IGMPMIGFMFVTSISLGIISRLVPQMNVFMVGMPLKILVGFILMVGMIPVWADVFSQ 240 >gi|320354334|ref|YP_004195673.1| flagellar biosynthetic protein FliR [Desulfobulbus propionicus DSM 2032] gi|320122836|gb|ADW18382.1| flagellar biosynthetic protein FliR [Desulfobulbus propionicus DSM 2032] Length = 259 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 111/220 (50%), Gaps = 3/220 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L + RV + + +P + S I ++++ A+A S++L P + I F + L+ Sbjct: 16 LCLARVLALVAAIPAFAGSAISGRIKIGLAVATSLLLFPAMAPHIPKVAF-TLTEFGLLI 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ LG + GL+ ++ + F G+VI +G + + ++ I+ L Sbjct: 75 VNEVLLGVMIGLVTQMVFAAVSFGGTVIGYQMGFAAANIFDPQTTQQLSLMSQFANILAL 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPFLFF 192 L +D HH F ALV+SY +P G L+F + + + F++ ++ S+P L Sbjct: 135 LVFLALDMHHFFFRALVESYHLLPPG-PLDFSHGAVEELMRLASRMFVLGVKFSAPVLTL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++ N+ +G+L ++ PQ+ ++ +S P IG+ L + L++ Sbjct: 194 LLLTNLVLGILARVFPQLNVFMLSFPLNIGIAFLVIGLTL 233 >gi|134294168|ref|YP_001117903.1| flagellar biosynthetic protein FliR [Burkholderia vietnamiensis G4] gi|134137325|gb|ABO53068.1| flagellar biosynthetic protein FliR [Burkholderia vietnamiensis G4] Length = 260 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + +PM+V++ A ++V+ P L + F + + +V+ + Sbjct: 21 VRMLALVATAPLVGHGAVPMRVKIGLAAFMALVVAPTLGAMPGVTVFSAQGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G + + ++ G I ++GL T + A + + + +LA Sbjct: 79 FLIGVSMGFTMHLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGRFLNAVAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QVF AL S+ T+P+ EL + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVFAALAASFQTLPVSAELLHAPGWHTLAAFGVTVFQMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 199 NLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 >gi|330961235|gb|EGH61495.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 258 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 110/223 (49%), Gaps = 3/223 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ S +M +P + + +P +VRL A+A ++V+ P L + +Q A L+ ++ Sbjct: 22 RIISLLMTMPIIGTTLVPRRVRLYLAVAITVVVAPALPNMPPVQALDLSALL--LIGEQI 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G GL ++++ G +IST +G+ + + ++ ++ + ++ L Sbjct: 80 IIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTMLVTLLFL 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V LV+S+ T+P+G L N F N L LRL P + ++ N Sbjct: 140 SMNGHLVVLEILVESFTTMPVGSGLLVNN-FWELANGLGWVLSSGLRLVLPAITALLIIN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I+ G++ + PQ+ I+ I P + +G + L L+I I+ Q+ Sbjct: 199 IAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWLTIGDILNQYQ 241 >gi|260574395|ref|ZP_05842399.1| type III secretion system inner membrane R protein [Rhodobacter sp. SW2] gi|259023291|gb|EEW26583.1| type III secretion system inner membrane R protein [Rhodobacter sp. SW2] Length = 259 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 101/212 (47%), Gaps = 18/212 (8%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW-DTIDLQNFVNRAYYSK 71 FL++ RVG+ + LLP +P++VRL A+AF+ ++ P + + + L + ++ Sbjct: 23 FLVLLRVGAAMALLPAFGEQSVPVRVRLVLALAFTAIVAPAVATEVVPLAGSIALPLATE 82 Query: 72 LVMVELFLGC-----VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 VM L +G +H L I + S + G Q ++G + Sbjct: 83 -VMAGLIIGIGLRLFIHALQIAGAIAAQAASLSQLFAGAGAEPQPAIG-----------N 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ + GL + H ++ ++SY P G+ N ++ + + F + L+ Sbjct: 131 LLTMAGLALAVMAGLHVRMAELFIQSYQVFPAGRLPNSADLADWGLFQIGRVFSLGFVLA 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 SPF+ +++N+++G++N+ +PQ+ + F+ P Sbjct: 191 SPFVIASLIYNVALGIINRAMPQLMVAFVGAP 222 >gi|170694402|ref|ZP_02885556.1| flagellar biosynthetic protein FliR [Burkholderia graminis C4D1M] gi|170140825|gb|EDT08999.1| flagellar biosynthetic protein FliR [Burkholderia graminis C4D1M] Length = 260 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 107/230 (46%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P L +P++V++ A +I++ P L + F + +++ + Sbjct: 21 VRILALVATAPVLGNRSLPLRVKIGLAAFVTIIVAPTLGALPQVTVFSAEGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G+ +++ + TG + +GL T S + L++ + I +L Sbjct: 79 FLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDAQASSSSQVLSTYMYTIAMLVF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 VID H Q+ AL+ ++ T+P+ + + + N T F L LS P + ++ Sbjct: 139 LVIDGHLQMISALLATFNTLPVSANILGSPGWRTLANFGSTIFSAGLLLSLPVVAALLIT 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI ++ I P + +G L L L ++ F+ F G Sbjct: 199 NLALGILNRAAPQIGVFQIGFPLTMLIGMLLLQLMTPNMIPFFARLFTVG 248 >gi|240145486|ref|ZP_04744087.1| flagellar biosynthetic protein FliR [Roseburia intestinalis L1-82] gi|257202301|gb|EEV00586.1| flagellar biosynthetic protein FliR [Roseburia intestinalis L1-82] Length = 259 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 7/225 (3%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYYS 70 L LI+ R+ + + P P Q ++ F+ ++++ F+ T I+ + Y+ Sbjct: 14 LILILVRISCFVYIAPFFGTKNAPSQAKIGFSFFVALLVYGFVDKTAIEYTGLIG---YA 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +V+ E G + G + + F G++I IGL++ T + + T +L Sbjct: 71 IIVLKEGITGLLIGFAANICNSIILFAGNIIDMDIGLSMVTEFDPTMNTQVTITGNLYNY 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 LL L D HH + A+V S+ IPI GQ N+ ++ S + F+I R+ P Sbjct: 131 FILLLLIATDMHHVILQAVVDSFTVIPINGQFFNWDSLAGSITQYMTDLFVIGFRIFLPI 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFI--STPYLIGLGSLFLCLSI 232 ++ N +G+L K+ PQ+ ++ + L+G G LFL +S+ Sbjct: 191 FACMMILNCILGILAKVAPQMNMFAVGMQMKILVGFGVLFLTISL 235 >gi|291536021|emb|CBL09133.1| flagellar biosynthetic protein FliR [Roseburia intestinalis M50/1] Length = 259 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 7/225 (3%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYYS 70 L LI+ R+ + + P P Q ++ F+ ++++ F+ T I+ + Y+ Sbjct: 14 LILILVRISCFVYIAPFFGTKNAPSQAKIGFSFFVALLVYGFVDKTAIEYTGLIG---YA 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +V+ E G + G + + F G++I IGL++ T + + T +L Sbjct: 71 IIVLKEGITGLLIGFAANICNSIILFAGNIIDMDIGLSMVTEFDPTMNTQVTITGNLYNY 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 LL L D HH + A+V S+ +PI GQ N+ ++ S + F+I R+ P Sbjct: 131 FILLLLIATDMHHVILQAVVDSFTVVPINGQIFNWDSLAGSITQYMTDLFVIGFRIFLPI 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFI--STPYLIGLGSLFLCLSI 232 ++ N +G+L K+ PQ+ ++ + L+G G LFL +S+ Sbjct: 191 FACMMILNCILGILAKVAPQMNMFAVGMQMKILVGFGVLFLTISL 235 >gi|42524692|ref|NP_970072.1| flagellar biosynthetic protein FliR [Bdellovibrio bacteriovorus HD100] gi|39576902|emb|CAE78131.1| flagellar biosynthetic protein FliR [Bdellovibrio bacteriovorus HD100] Length = 259 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 12/162 (7%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLAETPLNSLIGII 131 EL +G G L R++ + TG ++S ++GL+ MG + E +++ Sbjct: 78 ELIVGLALGFLTRLFFFVVSMTGDLVSMSVGLSAAQLYNPMMGSQGGVIEQFYSAM---- 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L I+ HH + A+ +SY +P+ LNFG F+ Q F++ +++ +P L Sbjct: 134 ATLVFLAINGHHMLISAIAQSYELVPVSSLALNFGP-FAEIAVFGQVAFVMAIKMCAPVL 192 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCL 230 ++ N+++G+L + VPQI + S P ++G+ +F+CL Sbjct: 193 VAILIVNLAMGILGRAVPQINVLVTSMPVTIMLGMAVVFICL 234 >gi|296103570|ref|YP_003613716.1| flagellar biosynthesis protein FliR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058029|gb|ADF62767.1| flagellar biosynthesis protein FliR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 261 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 108/231 (46%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P LS IP +V++ + +I++ P L +++ F A + L Sbjct: 17 FWPMLRILALITTAPILSEKAIPKRVKVGLGIIITIIVAPSL-PAVNIPIFSANAVWVAL 75 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G G +++ ++ G +I +GL+ T + L L +I ++ Sbjct: 76 Q--QILIGVAVGFTMQLAFAAVRTAGELIGLQMGLSFATFVDPGSHLNMPVLARIIDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG+ N F + F+ L L+ P + Sbjct: 134 MLLFLSFNGHLWLISMLVDTFHTLPIGENPVNSNAFLALTRAAGLVFLNGLMLALPIITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ ++ I P + +G L + L + +I H F Sbjct: 194 LLTVNLALGLLNRMAPQLSVFVIGFPLTLTVGILLMSLLMPLIAPFCEHLF 244 >gi|253573536|ref|ZP_04850879.1| flagellar biosynthetic protein FliR [Paenibacillus sp. oral taxon 786 str. D14] gi|251847064|gb|EES75069.1| flagellar biosynthetic protein FliR [Paenibacillus sp. oral taxon 786 str. D14] Length = 262 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 7/215 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI CR+ + ++ P S +P ++ FA ++V+L + Q+ N Y ++ Sbjct: 13 LIFCRMTAFFVVSPIFSSRSVPNTFKVGFAGIIAVVILLTIGPN---QSIPNDLGYILVI 69 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G + + +Q GS I IG + + + L +L II Sbjct: 70 IREVLVGLLMGYVANLIFSVIQMAGSFIDIQIGFGIANVIDPMTGASAPVLGNLKYIIAT 129 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIG----QELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 L ++ HH + A+++SY +P+ Q++ GN+ V FM+ ++S+P Sbjct: 130 LVFLSMNGHHYLLDAVIRSYNWVPLSNQVFQQIYNGNLSEFLVQTFSQAFMLAFQMSAPL 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + V ++++G L + PQ I+ I P I +G Sbjct: 190 VVALFVTDVALGFLARTAPQFNIFVIGIPVKIIVG 224 >gi|225375341|ref|ZP_03752562.1| hypothetical protein ROSEINA2194_00966 [Roseburia inulinivorans DSM 16841] gi|225212830|gb|EEG95184.1| hypothetical protein ROSEINA2194_00966 [Roseburia inulinivorans DSM 16841] Length = 259 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 3/223 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ RV + + P MS +P QV++ ++ I LL + + + Y+ +V Sbjct: 16 LILVRVSCFVYIAPFYGMSNVPNQVKI--GLSAMIALLVSGFADVSQVEYTGLIGYAVIV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E G + GL V + F G++I IGL++ T ++ T +L L Sbjct: 74 LKEGITGLLIGLAANVCNSIILFAGNIIDMDIGLSMATEFDPINNAQVTLTGNLYNYFIL 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + L V D HH + A V ++ IP+ GQ ++ ++ S + F+I R+ P Sbjct: 134 MLLVVTDMHHYILRAFVDAFTVIPVNGQVFDWEHLMRSMTTYMGDMFVIAFRIILPVFAC 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ N +G++ K+ PQ+ ++ + I +G + L L++ ++ Sbjct: 194 IMILNCILGIMAKVSPQMNMFAVGMQMKIMVGFVVLFLTVSLL 236 >gi|304404262|ref|ZP_07385924.1| flagellar biosynthetic protein FliR [Paenibacillus curdlanolyticus YK9] gi|304347240|gb|EFM13072.1| flagellar biosynthetic protein FliR [Paenibacillus curdlanolyticus YK9] Length = 263 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI CR+ + ++ P SM +P ++ + F + L+ FL + ++ V A Y V Sbjct: 13 LIFCRMTAFFVVAPLFSMRGVPTTFKI--GLGFFLTLIVFLTYGVK-ESIVPDATYILFV 69 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G ++ ++ +Q G+++ ++G + + + L +L +I + Sbjct: 70 IREVLVGLLLGFVVYLFFTVVQTAGALMDISMGFAMSNVVDPMTGASSPMLGNLKYMILV 129 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN-----MLQTTFMIMLRLSSP 188 L ++ HH + AL+ SY +P+ +L F I+S V+ TFM+ +++SP Sbjct: 130 LVFLSMNGHHYMLTALMDSYKWMPLDNDL-FARIYSGKVSEFIVLAFSETFMLAFQIASP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + ++ +G L K PQ ++ I P I +G L L + + F H F Sbjct: 189 IIVAMFLTDVGLGFLAKTAPQYNVFVIGMPLKILIGVFMLTLILPSMSGVFEHLF 243 >gi|148261121|ref|YP_001235248.1| type III secretion system inner membrane R protein [Acidiphilium cryptum JF-5] gi|326404522|ref|YP_004284604.1| flagellar biosynthetic protein FliR [Acidiphilium multivorum AIU301] gi|146402802|gb|ABQ31329.1| type III secretion system inner membrane R protein [Acidiphilium cryptum JF-5] gi|325051384|dbj|BAJ81722.1| flagellar biosynthetic protein FliR [Acidiphilium multivorum AIU301] Length = 259 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 26/231 (11%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVNRAYYSK 71 LI R+ S +M LP + P Q+R+ ++A + ++ P + TI + + + + Sbjct: 14 LLIFIRISSLVMALPFMGAGNAPPQIRIGLSIALTAIVAPLIVSGTIGVPSSIP--VFVF 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN----LQTSMGISDSLAETPLNSL 127 LV+ E+ +G G L L L G +IS +GL+ +G + +L L+ + Sbjct: 72 LVLREIVVGLSLGWLTAAIMLSLPVAGQIISYQMGLSSVLLPNVEIGPNSTLVANALSVM 131 Query: 128 IGII----GLLALWVIDFHHQVFYALVKSYGTIP-----IGQELNFGNIFSSF-VNMLQT 177 + + GL L V+ A+++S+ IP IG L + F V + Sbjct: 132 LPAVVFTTGLFMLPVL--------AIIRSFRVIPLTSTIIGAHLPPAGLLLGFAVRAVSA 183 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 F+ L L++PFLF +++ +GL++K+ P + +YF++ P + LG +FL Sbjct: 184 EFVTALHLAAPFLFIGLLWQAGLGLMSKVAPSMQVYFVAAPLQL-LGGMFL 233 >gi|317406212|gb|EFV86460.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans C54] Length = 262 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 6/203 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 R+ + + P S S +P++V++ A ++ + P L D + ++ L VM Sbjct: 22 RILALVGTAPLFSESTVPVKVKIGLAFVLAVAVSPAL----DPAPPIAPGSFAGLWMVMQ 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G G +R+ +Q G + +GL+ + S L+ L I+ +L Sbjct: 78 QVLIGIAMGFTMRLVFAAVQTAGEFVGLQMGLSFASFFDPSTGANTAVLSRLFNIVAMLT 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 +D H V ALV+S+ T+P+ N + V +T F+ L L+ P + + Sbjct: 138 FLALDGHLLVLAALVRSFDTLPVAAIQLHQNGWGVVVEWGKTVFVSGLLLALPLICALLT 197 Query: 196 FNISIGLLNKLVPQIPIYFISTP 218 N+++G+LN+ PQ+ ++ + P Sbjct: 198 INLAMGILNRAAPQLSVFSVGFP 220 >gi|30248475|ref|NP_840545.1| hypothetical protein NE0459 [Nitrosomonas europaea ATCC 19718] gi|30138361|emb|CAD84370.1| Bacterial export protein, family 1 [Nitrosomonas europaea ATCC 19718] Length = 265 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++M ++ +G G +R+ ++ G + +GL T S + G++ Sbjct: 74 VLMQQIIIGLAMGFSMRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQVQLVGRFYGLL 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L ID H QV L S+ T+PIG E F++ VN FM+ L LS P L Sbjct: 134 ATLTFLAIDGHLQVIAILAHSFTTLPIGAEGMSTTSFTALVNWGIKIFMLGLHLSLPVLT 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++ N+++G+L + PQ+ I+ + P +G+G L + ++ Sbjct: 194 ALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWAL 234 >gi|94986974|ref|YP_594907.1| flagellar biosynthesis pathway, component FliR [Lawsonia intracellularis PHE/MN1-00] gi|94731223|emb|CAJ54586.1| Flagellar biosynthesis pathway, component FliR [Lawsonia intracellularis PHE/MN1-00] Length = 262 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 113/243 (46%), Gaps = 14/243 (5%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +S L R+ + +LP S+ P ++ A+ +IVL W + L A+ Sbjct: 12 LSFLLTFLRISVVLFMLPFFSIDGFPNMLKASIALILTIVL----WGRLSLSGTQMPAHP 67 Query: 70 SKLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP--- 123 LV++ E+FLG V GL + + G+Q G +++T +G + T ++D L Sbjct: 68 FDLVLLIISEVFLGIVLGLAVNFFFAGIQAGGEILATQMGFTMIT---LADPLTGNTTGF 124 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + + ++ L ++ H + A ++ +P G + + S +NM F+ L Sbjct: 125 IAHFLYMVATLVFLALNGHLFLIKAFTYTFKMVPAGGLVVREILLSELLNMAGMIFVFAL 184 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++P + + IS+GL+ + PQI I + P IG+G F+ L I+ + ++ F Sbjct: 185 HVAAPVMSALFLVEISLGLMARAAPQIHIMEVGFPVKIGVGFFFIGLLFTILSKE-TYRF 243 Query: 244 LYG 246 + G Sbjct: 244 IAG 246 >gi|325295423|ref|YP_004281937.1| flagellar biosynthetic protein FliR [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065871|gb|ADY73878.1| flagellar biosynthetic protein FliR [Desulfurobacterium thermolithotrophum DSM 11699] Length = 260 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 9/243 (3%) Query: 1 MTISPEIIMMSLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-- 57 MT +I SLFL+ RV S + P +S + IP+ +R+ +AFS L + + Sbjct: 1 MTEILDIHTFSLFLLTFVRVASFFLAFPFISTTLIPLNIRILLILAFSFYLSQIIEPSQM 60 Query: 58 IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117 ID+ ++ + LV+ E+ LG +L +Y+ +IS ++GL T + I D Sbjct: 61 IDITK-IDLLSFFLLVIKEVLLGISFSILTTIYSSIFIHAAELISYSMGL---TIVNIFD 116 Query: 118 SL--AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNML 175 S + + L+ I + + D + A V+S+ IPIG ++ F+ Sbjct: 117 STFGSISVLSRFFVYIFYVVFFFTDAYKIFIAAFVESFKIIPIGNFHLSDSLLYFFLKES 176 Query: 176 QTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + F + +++ PF+ + N+ + L+N+L+PQI ++ + P I +G FL I+ Sbjct: 177 KLIFFLSFKIAFPFIITLFITNLILALVNRLIPQINVFIVGLPLQIFIGLFFLSTGFSIL 236 Query: 236 VYQ 238 +Y Sbjct: 237 IYS 239 >gi|261340415|ref|ZP_05968273.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC 35316] gi|288317507|gb|EFC56445.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC 35316] Length = 261 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V++ + +I++ P L +D+ F +A + L Sbjct: 17 FWPMLRVLALISTAPILSERTIPKRVKVGLGIIITIIIAPSL-PPVDIPIFSAKAVWVAL 75 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G G +++ ++ G +I +GL+ T + L L +I ++ Sbjct: 76 Q--QIMIGVAVGFTMQLAFAAVRTAGELIGLQMGLSFATFIDPGSHLNMPVLARIIDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISMLVDTFHTLPIGDNPVNSNAFLALTRAAGLIFLNGLMLALPIITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+S+GLLN++ PQ+ ++ I P + +G L + L + +I H F Sbjct: 194 LLTVNLSLGLLNRMAPQLSVFVIGFPVTLTVGILLMSLLMPLIAPFCEHLF 244 >gi|260429506|ref|ZP_05783483.1| flagellar biosynthetic protein FliR [Citreicella sp. SE45] gi|260420129|gb|EEX13382.1| flagellar biosynthetic protein FliR [Citreicella sp. SE45] Length = 248 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 4/213 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ + LPGL IP++VR+ A+ + +L + + L ++ V+ E Sbjct: 17 RIGAMMASLPGLGEQIIPVRVRMVLALVLTAAVLSAVLPGMALPP-PGLGALARAVLTET 75 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G GL +R++ LQ GS+ + + +L +G S + + L+ + L L Sbjct: 76 VNGLAIGLWLRLFIHALQTAGSIAAQST--SLAQLLGNSAADPMPAIGHLLTVAALALLM 133 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 FH + +V SY +P + + I + + +F++ L++PF+ ++N Sbjct: 134 TTGFHVKAAAFVVLSYDLLPAMRFPDPSMIAQAGRGQIARSFLLAFTLAAPFVILSALYN 193 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 +++G +NK +PQ+ + F+ P +I LGS+ L L Sbjct: 194 LTLGFINKAMPQLMVAFVGAP-VITLGSIALLL 225 >gi|330976010|gb|EGH76076.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 258 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 113/230 (49%), Gaps = 3/230 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 15 SFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALL- 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + + Sbjct: 74 -LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTM 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L ++ H V LV+S+ T+P+G L N F N L LRL P + Sbjct: 133 LVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWALASGLRLVLPAI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NI+ G++ + PQ+ I+ I P + LG++ L +++ ++ Q+ Sbjct: 192 TALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGTVILWMTMGDMLNQYQ 241 >gi|169827138|ref|YP_001697296.1| flagellar biosynthesis protein FliR [Lysinibacillus sphaericus C3-41] gi|168991626|gb|ACA39166.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41] Length = 257 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 14/232 (6%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ RV + + +P S IP QV++ A+ VL ++ TID++ F Y LV Sbjct: 13 LVLVRVSAFFVTVPFFSYRTIPPQVKITLAL----VLAWMMYYTIDVEPFAFNDDYILLV 68 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIG 132 M E +G + GL+ + +Q GS I +G + + + A++PL ++ Sbjct: 69 MKEALVGLLLGLVGYIIMSAIQIAGSFIDFQMGFAIANIID-PQTGAQSPLIGQFFNMLA 127 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT----FMIMLRLSSP 188 L L I+ HH + + SY +P+ Q +F N SF + TT F I ++++P Sbjct: 128 FLLLLAINGHHMILDGIYYSYQFLPMDQFPSFTN--DSFPQFIITTFTAVFAIAFQMAAP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 + + ++++G+ K VPQ+ I+ + P IG+ LF +++ I V Q Sbjct: 186 VVATLFLVDLALGITAKTVPQLNIFVVGFPIKIGVSFLVLFTMMAVMIQVIQ 237 >gi|218670290|ref|ZP_03519961.1| flagellar biosynthesis protein FliR [Rhizobium etli GR56] Length = 62 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 40/58 (68%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI +LP LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVLPLLWDTV 58 >gi|254251036|ref|ZP_04944354.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa AUO158] gi|124893645|gb|EAY67525.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa AUO158] Length = 260 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P + ++ A ++++ P L + F + +V+++ Sbjct: 21 VRMLALVATAPVVGHASVPARAKIGVAAFMALIVAPTLGAMPGVTVFSAEGIW--IVVMQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T S A + + + +LA Sbjct: 79 FLIGAAMGFTMQIVFAAVEAAGDYIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QVF AL S+ T+P+ L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVFAALAASFQTLPVSAALLHAPGWRTLAAFGATVFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI I+ I P + +G L + L + +V SH F G Sbjct: 199 NLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMVPNLVPFVSHLFDMG 248 >gi|307546960|ref|YP_003899439.1| flagellar biosynthetic protein FliR [Halomonas elongata DSM 2581] gi|307218984|emb|CBV44254.1| K02421 flagellar biosynthetic protein FliR [Halomonas elongata DSM 2581] Length = 266 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 2/212 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ ++ P S +P Q ++ A A ++V+ P L D+ + ++ + Sbjct: 21 ARITGLMLSSPLWGHSSVPRQAKIALAGALTVVIAPMLPPMPDVAIVSWQGL--GILTEQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 L +G GL++RV +Q TG I +GL T S L+ L+ +I LL Sbjct: 79 LLIGAAMGLVMRVTLAVVQATGEFIGLQMGLAFATFFDPSSGTNMMVLSRLLYMITLLMF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H V L S+ ++PIG F V T F + L+ P + ++ Sbjct: 139 LALDVHLVVLEVLANSFRSLPIGIGRFDPAAFMMLVRYGATIFTSGMLLALPLVASLLII 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 N+S+G+LN+ PQ+ ++ I P + +G + L Sbjct: 199 NLSLGILNRAAPQLTVFNIGFPTSLTVGIILL 230 >gi|33592490|ref|NP_880134.1| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I] gi|33572136|emb|CAE41679.1| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I] gi|332381908|gb|AEE66755.1| flagellar biosynthetic protein FliR [Bordetella pertussis CS] Length = 262 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 11/234 (4%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV- 75 R+ + + P S S IP +V++ A +I + P I V + Y+ L ++ Sbjct: 21 VRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAP----AIGPMPAVPPSSYAGLFLLS 76 Query: 76 -ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G GL +RV +Q G + +GL+ + + L+ L I+ +L Sbjct: 77 QQVLIGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSRLFNIVAML 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +D H V ALV+S+ T+P+ + N + T F+ L L+ P + + Sbjct: 137 VFLALDGHLLVLGALVRSFDTLPVAVGVLDRNGWGILAEWGTTIFVSGLLLALPLICALL 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 N+++G+LN+ PQ+ ++ I P SL + L + IV S FL F Sbjct: 197 TINLAMGILNRAAPQLSVFAIGFPV-----SLIVGLVLLAIVLPHSGPFLERLF 245 >gi|255021384|ref|ZP_05293432.1| Flagellar biosynthesis protein FliR [Acidithiobacillus caldus ATCC 51756] gi|254969247|gb|EET26761.1| Flagellar biosynthesis protein FliR [Acidithiobacillus caldus ATCC 51756] Length = 262 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 110/226 (48%), Gaps = 6/226 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P S S +P+QVR+ A S+ + P L T+ +F++ A LV + Sbjct: 21 VRILALLSTAPVFSASAVPIQVRVGLAAIISVAIAPAL-PTLPAVHFLSGAGLVLLVE-Q 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G G + + +QF GSVIS +GL + + + L++ + + LL Sbjct: 79 IVIGTALGFAVTLIFSAVQFAGSVISLQMGLGFSSFFDPTTGVQVPTLSNFLNLAVLLFF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ V L++S+ +P+ L + F + + +++P L + Sbjct: 139 MALNGQLLVLVVLMRSFTVLPVDPNLVVHATAWHVLAAAGAAVFSLGMAIAAPVLGALFL 198 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSL---FLCLSIEIIVYQ 238 NI++G+L+KL PQ+ ++ + P LIG+G + L ++E++V Q Sbjct: 199 VNIALGVLSKLAPQLNLFVVGFPLLIGVGLIGLYLLAPALELVVRQ 244 >gi|33601553|ref|NP_889113.1| flagellar biosynthetic protein [Bordetella bronchiseptica RB50] gi|33575989|emb|CAE33069.1| flagellar biosynthetic protein [Bordetella bronchiseptica RB50] Length = 262 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 11/234 (4%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV- 75 R+ + + P S S IP +V++ A +I + P I V + Y+ L ++ Sbjct: 21 VRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAP----AIGPMPAVPPSSYAGLFLLG 76 Query: 76 -ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G GL +RV +Q G + +GL+ + + L+ L I+ +L Sbjct: 77 QQVLIGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSRLFNIVAML 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +D H V ALV+S+ T+P+ + N + T F+ L L+ P + + Sbjct: 137 VFLALDGHLLVLGALVRSFDTLPVAVGVLDRNGWGILAEWGTTIFVSGLLLALPLICALL 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 N+++G+LN+ PQ+ ++ I P SL + L + IV S FL F Sbjct: 197 TINLAMGILNRAAPQLSVFAIGFPV-----SLIVGLVLLAIVLPHSGPFLERLF 245 >gi|32471371|ref|NP_864364.1| flagellar biosynthetic protein fliR [Rhodopirellula baltica SH 1] gi|32443212|emb|CAD72043.1| probable flagellar biosynthetic protein fliR [Rhodopirellula baltica SH 1] Length = 264 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/205 (21%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---LQNFVNRAYYS 70 L++ R+G +M +P + + +P ++R A+ + +L+P L D + N + Sbjct: 17 LVLTRLGMLLMAMPAIGVG-VPKRIRALLALVLTAILMPTLAAQCDHPSMPTIDNLPELA 75 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E +G + G ++ GLQ G I++ G+ L S+ + S + L ++G+ Sbjct: 76 VAIGREALIGMLIGATTQMVITGLQLAGEAITSTGGMQLGDSIDPTTSSSMPALARMVGM 135 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + + H V LV+S+ IP G ++ + + ++ + +R++ P + Sbjct: 136 LVTTVMLITGAHRVVLRLLVESFQHIPPGNVQFTDSMMDAVIVVMGNSMASGVRVAGPVI 195 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFI 215 ++ N+ GL+++ +PQI + I Sbjct: 196 AALLLANLVTGLISRTLPQINVLAI 220 >gi|302185377|ref|ZP_07262050.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae 642] Length = 258 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 112/230 (48%), Gaps = 3/230 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 15 SFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALL- 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + + Sbjct: 74 -LIGEQIIIGAGMGLSLQLFFHIFVVAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTM 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L ++ H V LV+S+ T+P+G L N F N L LRL P + Sbjct: 133 LVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNN-FWELANGLGWVLSSGLRLVLPAI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+ Sbjct: 192 TALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQ 241 >gi|327537627|gb|EGF24339.1| flagellar biosynthetic protein fliR [Rhodopirellula baltica WH47] Length = 264 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/205 (21%), Positives = 98/205 (47%), Gaps = 4/205 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---LQNFVNRAYYS 70 L++ R+G +M +P + + +P ++R A+ + +L+P L D + N + Sbjct: 17 LVLTRLGMLLMAMPAIGVG-VPKRIRALLALVLTAILMPTLAAQCDHPSMPTIDNLPELA 75 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E +G + G ++ GLQ G I++ G+ L S+ + S + L ++G+ Sbjct: 76 VAIGREALIGMLIGATTQMVITGLQLAGEAITSTGGMQLGDSIDPTTSSSMPALARMVGM 135 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + + H V LV+S+ IP G ++ + + ++ + +R++ P + Sbjct: 136 LVTTVMLITGAHRVVLRLLVESFQHIPPGNVQFTDSMMDAVIVVMGNSMASGVRVAGPVI 195 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFI 215 ++ N+ GL+++ +PQI + I Sbjct: 196 AALLLANLVTGLISRTLPQINVLAI 220 >gi|257484901|ref|ZP_05638942.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289651608|ref|ZP_06482951.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aesculi str. 2250] gi|320325129|gb|EFW81198.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. glycinea str. B076] gi|320329388|gb|EFW85381.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. glycinea str. race 4] gi|330866460|gb|EGH01169.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889045|gb|EGH21706.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. mori str. 301020] gi|330986504|gb|EGH84607.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011079|gb|EGH91135.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 261 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 7/232 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q S Sbjct: 18 SFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQAL----DLS 73 Query: 71 KLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+++ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 74 GLLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQFF 133 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L ++ H V LV+S+ T+P+G L N F N L LRL P Sbjct: 134 TMLVTLLFLSMNGHLVVLEVLVESFTTMPVGGGLLVNN-FWELANGLGWALSSGLRLVLP 192 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+ Sbjct: 193 AITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQ 244 >gi|330953764|gb|EGH54024.1| flagellar biosynthesis protein FliR [Pseudomonas syringae Cit 7] gi|330972451|gb|EGH72517.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 258 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 112/230 (48%), Gaps = 3/230 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 15 SFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALL- 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + + Sbjct: 74 -LIGEQIIIGAGMGLSLQLFFHIFVVAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTM 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L ++ H V LV+S+ T+P+G L N F N L LRL P + Sbjct: 133 LVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNN-FWELANGLGWVLASGLRLVLPAI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+ Sbjct: 192 TALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQ 241 >gi|71735042|ref|YP_275526.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555595|gb|AAZ34806.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 258 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 7/232 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q S Sbjct: 15 SFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQAL----DLS 70 Query: 71 KLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+++ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 71 GLLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQFF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L ++ H V LV+S+ T+P+G L N F N L LRL P Sbjct: 131 TMLVTLLFLFMNGHLVVLEVLVESFTTMPVGGGLLVNN-FWELANGLGWALSSGLRLVLP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+ Sbjct: 190 AITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQ 241 >gi|289629018|ref|ZP_06461972.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298487819|ref|ZP_07005859.1| Flagellar biosynthesis protein fliR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157544|gb|EFH98624.1| Flagellar biosynthesis protein fliR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330880587|gb|EGH14736.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. glycinea str. race 4] Length = 258 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 7/232 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q S Sbjct: 15 SFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQAL----DLS 70 Query: 71 KLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+++ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 71 GLLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQFF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L ++ H V LV+S+ T+P+G L N F N L LRL P Sbjct: 131 TMLVTLLFLSMNGHLVVLEVLVESFTTMPVGGGLLVNN-FWELANGLGWALSSGLRLVLP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+ Sbjct: 190 AITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQ 241 >gi|311279108|ref|YP_003941339.1| flagellar biosynthetic protein FliR [Enterobacter cloacae SCF1] gi|308748303|gb|ADO48055.1| flagellar biosynthetic protein FliR [Enterobacter cloacae SCF1] Length = 264 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 110/231 (47%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + + P LS +P +V+L + ++ P L T D+ F A + L Sbjct: 17 FWPLLRVLALVSTAPILSEKTVPKRVKLGLGFIITAIVAPTLPPT-DVTLFSPNALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G +++ ++ G +I +GL+ T + S +L+ L ++ ++ Sbjct: 74 AIQQILIGIALGFTMQLAFAAIRTAGEIIGLQMGLSFATFVDPSSNLSMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L V + H + LV ++ T+PIG GN F + F+ L L+ P + Sbjct: 134 MLLFLVFNGHLWLISLLVDTFHTLPIGGLPLNGNAFLALSRAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++G+LN++ PQ+ ++ I P + +G + + + +I H F Sbjct: 194 LLTINLALGMLNRMAPQLSVFVIGFPITLTVGLILMSALMPLIAPFCEHLF 244 >gi|330899443|gb|EGH30862.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 258 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 112/230 (48%), Gaps = 3/230 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 15 SFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALL- 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + + Sbjct: 74 -LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTM 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L ++ H V LV+S+ T+P+G L N F N L LRL P + Sbjct: 133 LVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWALASGLRLVLPAI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+ Sbjct: 192 TALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQYQ 241 >gi|268316330|ref|YP_003290049.1| flagellar biosynthetic protein FliR [Rhodothermus marinus DSM 4252] gi|262333864|gb|ACY47661.1| flagellar biosynthetic protein FliR [Rhodothermus marinus DSM 4252] Length = 258 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 109/227 (48%), Gaps = 11/227 (4%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFA--MAFSIVLLPFLWDTIDL 60 ++PE ++ + L+ R+ ++ P IP++VR+ A +A+S+ L L Sbjct: 4 LNPEY-LLRVLLVFVRISGVLLAAPFFGQLSIPVRVRVLLAVLLAYSLSGL----VAGPL 58 Query: 61 QNFVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 ++A + V +E G + G + ++ G +I IGL++ + Sbjct: 59 PPHADQALGFIVAVALEALTGLLLGFAAHMIFWAVEMAGDLIGFQIGLHMAQVFNPLEGH 118 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 A PL L+ + L+ ++D HH V ALV+S+ +P+ N V + Sbjct: 119 AANPLGRLLSLAALMIFVLLDGHHVVLRALVESFRVVPLAGA-NLAASQPLLVQWVWDFL 177 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLG 224 ++ LRL++PF+ ++ ++++G+ ++VPQ ++ I+ P L+GL Sbjct: 178 VLALRLAAPFMVTILLIDVALGIFARVVPQADLFSIALPLKLLVGLA 224 >gi|311105948|ref|YP_003978801.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans A8] gi|310760637|gb|ADP16086.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans A8] Length = 262 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 11/234 (4%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VM 74 R+ + + P S S IP++V++ + ++ + P L D + ++ L VM Sbjct: 21 VRILALVGTAPLFSESLIPIKVKIGLSFVLAVAISPAL----DPVPPIAPGSFTGLWMVM 76 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G G +R+ +Q G + +GL+ + S L+ L II +L Sbjct: 77 QQVLIGIALGFTMRLVFAAVQTAGEFVGLQMGLSFASFFDPSSGANTAVLSRLFNIIAML 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +D H V ALV+S+ T+P+ N F V +T F+ L L+ P + + Sbjct: 137 TFLALDGHLLVLAALVRSFDTLPVAMIQLHQNGFGVVVEWGKTIFISGLLLALPLICALL 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 N+++G+LN+ Q+ ++ I P +L + ++I +V + FL F Sbjct: 197 TINLAMGILNRAAQQLSVFSIGFPV-----TLIIGVTILTVVLPHAGPFLESLF 245 >gi|163856446|ref|YP_001630744.1| flagellar biosynthesis protein FliR [Bordetella petrii DSM 12804] gi|163260174|emb|CAP42476.1| flagellar biosynthesis protein FliR [Bordetella petrii] Length = 262 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 10/202 (4%) Query: 19 VGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV--E 76 VGS P S S IP+++++ A ++ + P L + + Y+ L ++ + Sbjct: 27 VGSA----PLFSESTIPIRIKVALAFMLTVAVAPGL----EPPPAIPPGSYAGLWLLGQQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G G +R+ +Q G + +GL+ + S L+ L+ I+ +L Sbjct: 79 VLIGIAMGFTMRIVFAAVQTAGEFVGLQMGLSFASFFDPSTGANTAVLSRLLNIVAMLVF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H V ALV+S+ +P+ Q N + V QT F+ L L+ P + + Sbjct: 139 LALDGHLLVLAALVRSFDVLPLTQLTLDPNGWGILVQWGQTIFVSGLLLALPLICALLTI 198 Query: 197 NISIGLLNKLVPQIPIYFISTP 218 N+++G+LN+ PQ+ ++ + P Sbjct: 199 NLAMGILNRAAPQLSVFAVGFP 220 >gi|66046671|ref|YP_236512.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae B728a] gi|63257378|gb|AAY38474.1| Flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae B728a] Length = 261 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 112/230 (48%), Gaps = 3/230 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 18 SFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALL- 76 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + + Sbjct: 77 -LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTM 135 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L ++ H V LV+S+ T+P+G L N F N L LRL P + Sbjct: 136 LVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWVLASGLRLVLPAI 194 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+ Sbjct: 195 TALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQYQ 244 >gi|330808230|ref|YP_004352692.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376338|gb|AEA67688.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 260 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 105/223 (47%), Gaps = 3/223 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + +M +P + +P +VRL FA+A ++V+ P L + A LV ++ Sbjct: 24 RVTAVLMSMPVFGTTLVPRRVRLYFALAITVVIAPGLPPMPSVHALDLSALM--LVAEQI 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G + G ++++ G +IS +G+ + + ++ + + + ++ L Sbjct: 82 LIGTLMGFSLQLFFQAFVVAGQIISIQMGMAFASMVDPTNGVTTAVIGQFLTMLVTLLFL 141 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H VF L +S+ T+P+G L N F L + L P + +V N Sbjct: 142 AMNGHLVVFEVLTESFTTMPVGSAL-LVNHFWEIAGKLGWVLGAAMVLVLPAITALLVVN 200 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I+ G++ + PQ+ I+ I P ++ LG + +S+ I+ Q+ Sbjct: 201 IAFGVMTRAAPQLNIFSIGFPLILTLGMVIFWISLGDILNQYQ 243 >gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] Length = 614 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 112/214 (52%), Gaps = 7/214 (3%) Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNF--VNRAYYSKLVMV-ELFLGCVHGLLIRVYT 91 P ++ F++ FS LL ID N + YY + M+ E+ G V GL+ + Sbjct: 33 PKTLKAMFSLIFSFALL----GGIDYSNINSITSNYYLIIYMISEVTTGLVLGLISNIAF 88 Query: 92 LGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVK 151 + GS+I IGL++ ++ + + T +L+ + L+ +V+D HH + +L++ Sbjct: 89 EVVLMAGSLIDVHIGLSMVNTIDPNSKTSTTISGNLLHYVALMIFFVVDGHHMLIKSLIE 148 Query: 152 SYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIP 211 S+ +P+G+ L + + + ++ F+I L+++ P + I+ ++ +GL+++ VPQI Sbjct: 149 SFIILPMGKSLMYTDTMMVLIEVIAKYFVIGLKIAIPIVLIIILTDLCMGLISRAVPQIN 208 Query: 212 IYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + P + +G L + +S+ II+ F S Y Sbjct: 209 VMILGMPVKMLVGILAISVSLPIIIKLFVISISY 242 >gi|255523689|ref|ZP_05390655.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|296186693|ref|ZP_06855095.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|255512558|gb|EET88832.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|296048730|gb|EFG88162.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] Length = 320 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 115/238 (48%), Gaps = 6/238 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 +L LI R+ +++P S P V++ + + +L+P + D + N N + Sbjct: 9 ALILISIRMFCFFVVVPIFFPSGTPATVKVGITLIMAYILIPGV-DYTGINNINNNLPFI 67 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 M E G G + + ++F GS++ +G ++ T + S T + ++ Sbjct: 68 INCMNEAVAGFTLGFITNLCFNSVRFAGSIMDMQVGFSMMTMFDPTSSSNTTLIEHILYW 127 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 ++ +++D HH + AL++S+ I +G N + + + F I ++++ P + Sbjct: 128 FSMVVFFIVDGHHMLIKALIESFKVIKLGNFFLNQNSINLIIRVFIEYFEIAVKIAIPIV 187 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLSIEIIVYQFSHSFLYG 246 ++ +I++GL+++ VPQ+ + + P L+GLG+ C ++ I + +SF YG Sbjct: 188 LIILITDITMGLVSRTVPQLNVMILGMPVKILVGLGA--FCFALPIFLKMIENSF-YG 242 >gi|303240270|ref|ZP_07326789.1| flagellar biosynthetic protein FliR [Acetivibrio cellulolyticus CD2] gi|302592180|gb|EFL61909.1| flagellar biosynthetic protein FliR [Acetivibrio cellulolyticus CD2] Length = 261 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 109/220 (49%), Gaps = 6/220 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV-NRAY-YSK 71 LI R+ ++ P S + IP +++ F+ +++L+ +TI QN V N Y ++ Sbjct: 17 LIFIRMAGLFVIAPIFSRANIPTYLKIGFSFMLALILV----NTISNQNIVINNIYEFAA 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G G + + G +I IG + + ++ + ++ I+ Sbjct: 73 LVIREFVVGITLGYVSYTIFNAIYIAGELIDMQIGFGVVNVIDPISNIQVSITSTFYFIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L + + HH + AL SY +P+GQ + + S + + F+I ++++P L Sbjct: 133 CMLVFILCNGHHILIRALFSSYEYVPLGQAVFGSGLQSRILEIFGGIFLIAFKIAAPMLT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 ++ ++++G+++K VPQ+ ++ + P I LG + L+ Sbjct: 193 AILITDVALGVISKTVPQLNVFVVGMPLKIILGLAVMVLT 232 >gi|291288732|ref|YP_003505548.1| flagellar biosynthetic protein FliR [Denitrovibrio acetiphilus DSM 12809] gi|290885892|gb|ADD69592.1| flagellar biosynthetic protein FliR [Denitrovibrio acetiphilus DSM 12809] Length = 257 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 104/212 (49%), Gaps = 8/212 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +S + V R+G+ + +P + I Q+R A+ ++V+ P +++ + N Sbjct: 12 VSFLMAVARIGAILFTVPVFGSNVIKPQIRFVLAILIAMVIFP----SLEAMPYGNLPTG 67 Query: 70 SKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +VMV E+ +G G+L +G Q G ++ +G ++ M + + ++S Sbjct: 68 IIIVMVFKEILVGVCIGILSNFLFIGAQLGGQIVGLQMGFSVVNVMDPQSNTQLSIISSF 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I LL + H+ V A+ +S+ +IPIG E+N F+ + F+I +++ Sbjct: 128 LNIGMLLFFIAVGGHYLVLGAIAESFRSIPIGGAEIN-PIAFNYIAKLFSYIFLIAIKIM 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +P + ++F+ IG++ KL PQI + + P Sbjct: 187 APAIITLLIFSTVIGVIGKLAPQINLMIVGFP 218 >gi|119385354|ref|YP_916410.1| flagellar biosynthetic protein FliR [Paracoccus denitrificans PD1222] gi|119375121|gb|ABL70714.1| flagellar biosynthetic protein FliR [Paracoccus denitrificans PD1222] Length = 252 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 97/200 (48%), Gaps = 7/200 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV- 75 CRV +C ++LP S +P++VR MA + P L + ++ + + Sbjct: 22 CRVQACFLMLPVFSERAMPVRVRAALVMAVT----PLLAEHAQSVGGIDGLLHLAALAGA 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G V G L+R++ + L + A +L +G ++ + P+ +L+ + GL Sbjct: 78 EILSGLVLGGLVRLFAVALNIA--ATAIAATASLSQLIGAANEYSPHPIGNLMHLAGLAV 135 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 L + F L +S P+G S V++++ +F++ + L++PF+ + Sbjct: 136 LMALGFPVLACDLLRESLVLRPLGDWPQVSEALPSAVSLVRQSFVLAMLLAAPFILGGFL 195 Query: 196 FNISIGLLNKLVPQIPIYFI 215 F + G+++K++P +P+ FI Sbjct: 196 FQVLSGMISKVMPTLPVIFI 215 >gi|313672723|ref|YP_004050834.1| flagellar biosynthetic protein flir [Calditerrivibrio nitroreducens DSM 19672] gi|312939479|gb|ADR18671.1| flagellar biosynthetic protein FliR [Calditerrivibrio nitroreducens DSM 19672] Length = 259 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 3/233 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL V R+ + P I +++L ++ I++ PF+ IDL N + Sbjct: 15 FLTVVRISGILFTAPVFGSEIISARIKLFLSILIGILIFPFI-TAIDLSK-ANNLLMILI 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ EL +G GL+ R +G+QF G VI T +G + + ++ + + II Sbjct: 73 IIKELLIGIATGLIGRFLFVGVQFGGQVIGTQMGFGIVNVLDPQNNAQISLVAQFQNIIM 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L VI H + A+VKS+ IP+G + + V + F+ L++++P Sbjct: 133 ILFFLVIGGHLYIIQAIVKSFEMIPLGVFVFNKESYIFIVTIFSKIFLTALKITAPIFVT 192 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 +V + +G++ +LVPQ+ I I P I G L + ++ Y S +Y Sbjct: 193 LLVTQVVLGIMGRLVPQLNILIIGFPIQIA-GGLIVIITSLTFFYSMFESLMY 244 >gi|327441038|dbj|BAK17403.1| flagellar biosynthesis pathway, component FliR [Solibacillus silvestris StLB046] Length = 258 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 111/224 (49%), Gaps = 9/224 (4%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 RV + + +P S IP QVR+ A+A + ++ + T +++ F A+Y LV+ E Sbjct: 16 VRVSAFFVSVPLFSYRTIPPQVRIILAVALAWMM----YYTFNIEPFEINAFYLLLVLKE 71 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLLA 135 +G + GL + +Q G I +G + + + A++PL + + LL Sbjct: 72 AIIGLMLGLAAMIIVSAVQIAGGFIDFQMGFAMANIID-PQTGAQSPLMGQFLNFLMLLL 130 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSF--VNMLQTTFMIMLRLSSPFLFF 192 L I+ HH + + SY +P+ Q NFG ++ + + + F I ++S+P + Sbjct: 131 LLSINGHHLILDGIYYSYQFMPMDQFFPNFGEEGTALFIIKIFVSVFAIAFQMSAPIVAT 190 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +++G+ K VPQ+ I+ I P I +G L L +++ ++V Sbjct: 191 LFLVTLALGITGKTVPQMNIFVIGFPIKIAVGFLVLIVTMGVLV 234 >gi|293605016|ref|ZP_06687411.1| flagellar biosynthetic protein FliR [Achromobacter piechaudii ATCC 43553] gi|292816585|gb|EFF75671.1| flagellar biosynthetic protein FliR [Achromobacter piechaudii ATCC 43553] Length = 262 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 11/234 (4%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VM 74 R+ + + P S S IP++V++ + ++ + P L D + Y+ L VM Sbjct: 21 VRILALVGTAPLFSESAIPVKVKVGLSFVLAVAVSPAL----DPMPPIAPGSYAGLWMVM 76 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G G +R+ +Q G + +GL+ + S L+ L ++ +L Sbjct: 77 QQVLIGIAMGFTMRIVFAAVQTAGEFVGLQMGLSFASFFDPSSGANTAVLSRLFNMVAML 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +D H V ALV+S+ T+P+ N + V +T F+ L L+ P + + Sbjct: 137 TFLALDGHLLVLAALVRSFDTLPVAAIQLHQNGWGVVVEWGKTVFVSGLLLALPLICALL 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 N+++G+LN+ Q+ ++ + P +L + +++ +V + FL F Sbjct: 197 TINLAMGILNRAAQQLSVFSVGFPV-----TLIIGVTVLTVVLPHAGPFLETLF 245 >gi|303326360|ref|ZP_07356803.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. 3_1_syn3] gi|302864276|gb|EFL87207.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. 3_1_syn3] Length = 263 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 109/238 (45%), Gaps = 13/238 (5%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +SL L + RV + +LP S + IP+ V+ + FS+ + W + L + A+ Sbjct: 12 LSLLLTMMRVSIVMFMLPVFSTNNIPIPVKAAVTIVFSLGV----WPHLALSGAIMPAHP 67 Query: 70 SKLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +V++ E+ LG V G+ + +G+Q G ++ +G T + +D L + Sbjct: 68 FDMVLMLLGEVVLGLVLGMAVNFLFMGIQAGGELLGFQMGF---TMINFADPLTGNQTGA 124 Query: 127 ---LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + ++ LLA +D H + S+ +P G N+ +++ F++ L Sbjct: 125 TAFFLWMVSLLAFLALDGHLYMIKGFAASFALVPPGGLFIGENLLWQVLDLAAQVFVLAL 184 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++++P + + +++ L+ + PQI I P IG+G F+ L + ++ H Sbjct: 185 KIAAPVMVALFMVEVALALVARTSPQIHIMEFGFPIKIGVGFFFVGLLLVVMADHVEH 242 >gi|253702492|ref|YP_003023681.1| flagellar biosynthetic protein FliR [Geobacter sp. M21] gi|251777342|gb|ACT19923.1| flagellar biosynthetic protein FliR [Geobacter sp. M21] Length = 261 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/235 (19%), Positives = 104/235 (44%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ L L++ RV +P +P +V++ A ++++ P + + N + Sbjct: 13 LIPLALVLARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKPH-AVPNVSDSLG 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E +G G + + ++F G ++ T +G+++ + + Sbjct: 72 LMLLVLQEALVGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPATQNNVPTMAIFQ 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 G + L + H +V SY IP+G G + F+ F+I ++L++P Sbjct: 132 GALATLLFLAFNVHEHFIRGIVDSYRVIPLGAWHVSGGLMKFFIETSTGIFIIGIKLAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++++G++ + P + ++ +S P IG+G + L +S+ + V SF Sbjct: 192 VSVALLATSVALGIVARSFPAMNVFMVSMPLSIGIGFVILGISLPVFVRVLQGSF 246 >gi|221635442|ref|YP_002523318.1| flagellar biosynthetic protein FliR [Thermomicrobium roseum DSM 5159] gi|221157870|gb|ACM06988.1| flagellar biosynthetic protein FliR [Thermomicrobium roseum DSM 5159] Length = 260 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 2/208 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+V RVG + LLPG +P+ R+ A+ ++ L+PF+ D + ++ + Sbjct: 17 LVVTRVGLVLSLLPGFGSQAVPLPARVALAVVLALALVPFV--PTDASGLSDPTVFAVAL 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 EL G GL + ++ S+I +G L + + + T LN+L + Sbjct: 75 ARELVTGLALGLAVAAVFAAVEMAASLIGYQLGFGLAATFNPAFGMQGTALNTLYLALAA 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L L+ + HHQ+ AL +S +P G + + + + F LR+ P Sbjct: 135 LVLFGTNGHHQLVGALARSLILLPPGAAAPDVDTPRAVIALTGAMFSDALRIGLPIAGSL 194 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLI 221 +V +I +GLLN++VPQ+ ++F+ P I Sbjct: 195 LVADIGLGLLNRMVPQMSVFFVGLPAKI 222 >gi|251772430|gb|EES52997.1| Flagellar biosynthesis protein FliR [Leptospirillum ferrodiazotrophum] Length = 269 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 30/239 (12%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 PE+ + LI+ R ++ +P + +P +V+ A+A S +L P + + NF Sbjct: 15 DPELFV----LILARTSGVLIAMPAFNSRAVPTKVKALVAVALSALLFPVVGGRV---NF 67 Query: 64 VNRAYYSKL--VMVELFLGCVHG----LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117 Y + L ++ E +G G L+ L Q G +Q GI D Sbjct: 68 HETGYDALLFSILTEFVVGVSMGFAAYLVFAAVALAGQLAG----------VQAGFGIVD 117 Query: 118 -----SLAETPL-NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSF 171 +AE PL + I L + + + +AL +SY + +G G+ F+ Sbjct: 118 VINPLGVAEVPLLGNFQTQIAFLIFLATNAQYAMLWALARSYDVVGVGGASFSGSYFAGI 177 Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++ + L L+SPF+ ++ N+ +G L+K++PQ+ + + P ++ LG L L + Sbjct: 178 AHLFGRMMSLGLVLASPFIVGGVILNLVLGFLSKMMPQMNLISLGLPVMV-LGGLVLTI 235 >gi|206561838|ref|YP_002232603.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia J2315] gi|198037880|emb|CAR53824.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia J2315] Length = 260 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 108/230 (46%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P++V++ A ++V+ P L D+ F + +++ + Sbjct: 21 VRMLALVATAPVVGHAAVPVRVKIGLAAFMALVVAPTLGAMPDVTVFSAPGIW--ILVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T S A + + + +LA Sbjct: 79 FLIGVAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHTSGATPVMGRFLNAVAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H Q+F AL S+ ++P+ +L + + F + L L+ P + ++ Sbjct: 139 LAVDGHLQMFAALAASFQSLPVSGDLLHAPGWRTLATFGAVVFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI ++ + P + +G L + L + +V SH F G Sbjct: 199 NLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSHLFDMG 248 >gi|302037620|ref|YP_003797942.1| flagellar biosynthetic protein FliR [Candidatus Nitrospira defluvii] gi|300605684|emb|CBK42017.1| Flagellar biosynthetic protein FliR, export component [Candidatus Nitrospira defluvii] Length = 263 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 15/236 (6%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 +++ R+ + + P L+ IPM V+ +VL P I L N N LV Sbjct: 20 ILLVRIAGIVSVFPILNTRTIPMPVKTGLVATLGLVLAPI----IHLPNLPNDPV---LV 72 Query: 74 MV----ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + E +G GL +R+ G Q G +I T +G + M S TP+ + Sbjct: 73 IAGIGSEFLIGLTIGLAVRLLFSGFQVAGDMIGTQMGFS-AIQMFDPMSHQNTPIIAQFQ 131 Query: 130 I-IGLLALWVIDFHHQVFYALVKSYGTIP-IGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +G L ++ H V +A+ SY +P G L+ G I +++ Q + L+L++ Sbjct: 132 LTLGSLVFLSLNAHLLVVHAIGMSYEYVPPFGASLSDG-IAQDIIHLAQNMLGVALKLAA 190 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P ++ N + +L + VPQ+ ++ S P IG G L + L++ + F F Sbjct: 191 PVFATLLIVNTVLAILGRAVPQMNVFVTSFPITIGAGFLAMSLAMPFTLLLFEKEF 246 >gi|23099028|ref|NP_692494.1| flagellar biosynthesis protein FliR [Oceanobacillus iheyensis HTE831] gi|22777256|dbj|BAC13529.1| flagellar protein required for flagellar formation [Oceanobacillus iheyensis HTE831] Length = 259 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI RV + +++P S +P+Q ++ + +I+++ T+D Y Sbjct: 12 AFLLIFVRVLAFFVIMPLFSYRSVPVQFKIGISFFLAIIMI----STVDTAGIAVNNLYI 67 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN-SLIG 129 L++ E+ +G GL+ + +Q G I +G + + + A++PL + Sbjct: 68 FLIVKEILVGICIGLIAYIIVSAIQVAGGFIDFQMGFAIANVVD-PQTGAQSPLTGQYLY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRLSS 187 II LL L ++ HH + + SY IP+ Q L FG +I + T F++ +++ Sbjct: 127 IISLLFLLSVNGHHIIIDGIFNSYSYIPLNQFLPFGEESIVQFVLTTFNTMFLVAFQIAI 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + + ++++G++ + VPQ+ ++ + P Sbjct: 187 PIVGCLFLVDVALGIIARTVPQMNVFVVGLP 217 >gi|330876031|gb|EGH10180.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964681|gb|EGH64941.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. actinidiae str. M302091] Length = 258 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 113/232 (48%), Gaps = 7/232 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q S Sbjct: 15 SFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQAL----DLS 70 Query: 71 KLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+++ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 71 GLLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQFF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L ++ H V LV+S+ T+P+G L N F N L LRL P Sbjct: 131 TMLVTLLFLSMNGHLVVLEILVESFTTMPVGGGLLVNN-FWELANGLGWALSSGLRLVLP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+ Sbjct: 190 AVTALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQ 241 >gi|126653731|ref|ZP_01725649.1| flagellar biosynthesis protein R [Bacillus sp. B14905] gi|126589695|gb|EAZ83831.1| flagellar biosynthesis protein R [Bacillus sp. B14905] Length = 257 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ RV + + +P S IP QV++ A+ VL ++ TID++ F Y LV Sbjct: 13 LVLVRVSAFFVTVPFFSYRTIPPQVKITLAL----VLAWMMYYTIDVEPFAFNDEYILLV 68 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIG 132 M E +G + GL+ + +Q GS I +G + + + A++PL ++ Sbjct: 69 MKEALVGLLLGLVGYIIMSAIQIAGSFIDFQMGFAIANIID-PQTGAQSPLIGQFFNMLA 127 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSF-VNMLQTTFMIMLRLSSPFL 190 L L I+ HH + + SY +P+ Q +F N F F + F I ++++P + Sbjct: 128 FLLLLAINGHHMILDGIYYSYQFLPMDQFPSFTNEGFPQFIITTFTAVFAIAFQMAAPVV 187 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 + ++++G+ K VPQ+ I+ + P I + LF +++ I V Q Sbjct: 188 ATLFLVDLALGITAKTVPQLNIFVVGFPIKIAVSFLVLFTMMAVMIQVIQ 237 >gi|317129191|ref|YP_004095473.1| flagellar biosynthetic protein FliR [Bacillus cellulosilyticus DSM 2522] gi|315474139|gb|ADU30742.1| flagellar biosynthetic protein FliR [Bacillus cellulosilyticus DSM 2522] Length = 259 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 9/224 (4%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ RV + ++ LP S IP +++ A+ S ++ F D L+ +N +Y Sbjct: 10 AFMLVLVRVSAFLITLPFFSYQNIPAPLKIGLALFISWIMF-FAGDWPALE--INYHFY- 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN-SLIG 129 L++ E +G GL+ + +Q G +I +GL + + + A++PL S + Sbjct: 66 LLIIKEALVGLTVGLIAMILLYAIQVAGGIIDYKMGLMIANVID-PQTGAQSPLTGSYLY 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGN--IFSSFVNMLQTTFMIMLRLS 186 +L L D HH + + SY IP+ Q + FGN I V T F+I +++ Sbjct: 125 TFSILFLLATDAHHLLLDGVFYSYQFIPMDQLFIPFGNEAILDHVVVTFSTMFLIAFQMA 184 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 P + + ++++G++++ VPQI ++ + P + +G + L L Sbjct: 185 MPIVGSIFLVDLALGMVSRAVPQINVFVVGMPLKVLVGFILLLL 228 >gi|188997533|ref|YP_001931784.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium sp. YO3AOP1] gi|188932600|gb|ACD67230.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium sp. YO3AOP1] Length = 257 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 112/225 (49%), Gaps = 6/225 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI R+ + M P +S IP V++ ++F+ + ++++ + + + L+ Sbjct: 14 LIFSRIIAFFMAFPLISSPIIPHNVKVLLVVSFAYFTMLNFNIKLEIKEY-DLLVFLTLI 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+F+G G+++ ++ + +IS +GL + + + +T + S + Sbjct: 73 LKEVFIGFSLGIIVNIFIGAFSYAAEIISYLMGLTVLNMF--NPAFGQTSVLSGYFLFLF 130 Query: 134 LALWVIDFHHQVFY-ALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ I +Q+F AL KS+ IP+ N N +F + F++ +++ PF+ Sbjct: 131 YFLFFISGAYQIFIGALFKSFEVIPL-SSFNINNGVFEFIIKKSSDIFLLSFQMAFPFIL 189 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +VFNI + L+N+L+PQI ++ + P I +G + L + +I+ Sbjct: 190 VLLVFNIVLALINRLIPQINVFMVGLPAQIFIGFVILIFASSLII 234 >gi|313896132|ref|ZP_07829686.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 137 str. F0430] gi|320529416|ref|ZP_08030504.1| flagellar biosynthetic protein FliR [Selenomonas artemidis F0399] gi|312975557|gb|EFR41018.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 137 str. F0430] gi|320138382|gb|EFW30276.1| flagellar biosynthetic protein FliR [Selenomonas artemidis F0399] Length = 260 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 100/209 (47%), Gaps = 2/209 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ R+ ++ P IPM R+ A+A S+VL P + + + + Sbjct: 13 AFLLMLTRISGIFLISPFFGSMNIPMFFRVGIALAMSVVLFPVVDGLGTPETPPSIIMFG 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 V+ ELF+G + G + + + G V+ +G + + + + S + Sbjct: 73 AAVLGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAVVNVVDPTSGQQIPLIGSFLYN 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ L V + HH + ALV+S+ +P+ G E N ++ N T F+ ++++ P Sbjct: 133 LAVIILLVTNGHHMLIAALVESFRAVPLAGLEANI-SLALIIANFTGTIFLTGMKIAMPI 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ N+ +G+L++ +PQ+ I+ + P Sbjct: 192 TFAILLTNVGLGILSRTMPQMNIFVVGIP 220 >gi|310820309|ref|YP_003952667.1| type III secretion system inner membrane r protein [Stigmatella aurantiaca DW4/3-1] gi|309393381|gb|ADO70840.1| Type III secretion system inner membrane R protein [Stigmatella aurantiaca DW4/3-1] Length = 273 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/240 (21%), Positives = 111/240 (46%), Gaps = 13/240 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++CR+ ++ P L +P +VR+ + S+VL P + D + + Y L+ Sbjct: 26 LLMCRIMPVLIFSPFLGGEVVPPEVRMGVGVTLSLVLFPSVADRMGALP-TSALPYIALL 84 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLAETPLNSLIG 129 + E+F+G ++ + + G+++ T G N +G SL +SL Sbjct: 85 LKEVFIGVSLAFIVNIIFDAARVAGTLVDTMAGSNNAQLYVPQLGQQVSL----FSSLKV 140 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF----MIMLRL 185 + ++ +D HH V AL S+ +P+ F +F ++ F I L L Sbjct: 141 QLSVVLFLTLDGHHIVISALADSFAIVPLDSFPKFSKGTWAFFEVISRAFANLLAISLSL 200 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++P + + ++++G +N++ P + ++FI+ + L L++ +++ +F F++ Sbjct: 201 AAPQMLSAFLTDLAMGAVNRVAPNLQVFFIAMAIKPMVSVLIAALALHMLIGRFQSEFVH 260 >gi|302387777|ref|YP_003823599.1| flagellar biosynthetic protein FliR [Clostridium saccharolyticum WM1] gi|302198405|gb|ADL05976.1| flagellar biosynthetic protein FliR [Clostridium saccharolyticum WM1] Length = 253 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 9/228 (3%) Query: 5 PEIIMMSLF-LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 P+I M LF LI R+ I+L P L P V+ M F+ LL + + + Sbjct: 2 PDIGQMMLFSLIFMRMSGFILLNPILGRRNTPNVVKGGMIMVFT--LLVYSFSAAQVPEP 59 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 VN ++ L++ E +G G ++ ++ + + F G +I +GL++ T I D + T Sbjct: 60 VNSIEFAVLMIKEFIMGYTIGFVMDLFLMVITFAGHIIDFQMGLSMAT---IYDPQSNTQ 116 Query: 124 L---NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + SL +L + +D H + L+KS T+P GQ + + + + + + Sbjct: 117 IAITGSLWNAYFMLLFFAVDGHLALIKLLIKSAETVPYGQVVIGTKVAWAMIEVFIQCII 176 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 + ++ S P + + I++G+L K++PQI ++ ++ + +G L L Sbjct: 177 MAIKFSLPIVAIEFITEIAVGILMKMIPQINVFVVNIQAKLVIGLLML 224 >gi|70729045|ref|YP_258779.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens Pf-5] gi|68343344|gb|AAY90950.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens Pf-5] Length = 255 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVN 65 S L + RV S +M++P + +P +VRL FA+A ++V+ P L +DL + Sbjct: 12 SFMLPLFRVTSLLMVMPVFGTTLVPRRVRLYFALAITVVIAPGLPPMPEVHALDLSGLL- 70 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 LV ++ +G V G ++++ G +++ +G+ + + ++ ++ + Sbjct: 71 ------LVAEQILIGAVLGFSLQLFFQAFVVAGQIVAIQMGMGFASMVDPTNGVSVAVIG 124 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 ++ L ++ H VF L +S+ T+P+G L N + L L L Sbjct: 125 QFFTMLVTLLFLAMNGHLVVFEVLTESFTTLPVGGGLMV-NHYWELAGKLGWVLGAALLL 183 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + +S+ I+ Q+ Sbjct: 184 VLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIVWISLADILNQYQ 238 >gi|121533744|ref|ZP_01665571.1| flagellar biosynthetic protein FliR [Thermosinus carboxydivorans Nor1] gi|121307735|gb|EAX48650.1| flagellar biosynthetic protein FliR [Thermosinus carboxydivorans Nor1] Length = 260 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 8/223 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI RV + P L IP+ + FA+ S +L P + + Y LV Sbjct: 16 LIFTRVTGILTTAPILGSRNIPVYTKAGFALILSYILTPIVVQRSHIIVPDQFGAYVFLV 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG---- 129 + EL +G + G + + +Q G ++ IG + + I D + L LIG Sbjct: 76 IGELLIGLILGYISSMIFYAVQMAGQLLDMQIGFGI---VNIIDPQSGQQL-PLIGNFKY 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I LL + + HH + AL S+ T+P+G + + +++ + +I L++S P Sbjct: 132 IFSLLVFFATNGHHILLSALFTSFKTVPVGAAVFRPQLADLVIDITFSVLIIALKISLPI 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 L + +I++G+L +++PQ+ I+ + P I +G L L++ Sbjct: 192 LVAIFLTDIAMGILARIMPQMNIFIVGIPGKIIVGIFMLALTL 234 >gi|310816837|ref|YP_003964801.1| flagellar biosynthetic protein FliR [Ketogulonicigenium vulgare Y25] gi|308755572|gb|ADO43501.1| flagellar biosynthetic protein FliR [Ketogulonicigenium vulgare Y25] Length = 259 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/219 (21%), Positives = 103/219 (47%), Gaps = 2/219 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + FL+ R G+ LLP +P+++RL A+A +++ L + V Sbjct: 12 EPVGFAAFLVFLRAGAFCALLPAFGEQTLPLRLRLSVAIAMTMITL-PAVLPLMPPPPVQ 70 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + L++ E+ G + GL +R+ L+ G++ + ++G+ G++ + + Sbjct: 71 ISQMGALLLTEIGAGLIFGLSLRLLVWALETAGAIAAQSVGVAQIFGPGMTAE-PSSAFS 129 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + G + Q ++ SY I G + + + +F + +RL Sbjct: 130 QIFIMAGFALACAMGLPVQAVAMMIGSYNVISPGIFPAPDMLAQAILPGFSESFSLAVRL 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++PF +++N+++G +N+ +PQ+ + F+ P L G+G Sbjct: 190 AAPFFIAGLLYNLTLGFVNRAMPQMMVTFVGAPALTGIG 228 >gi|28869178|ref|NP_791797.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. tomato str. DC3000] gi|213967545|ref|ZP_03395693.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. tomato T1] gi|301382882|ref|ZP_07231300.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tomato Max13] gi|302061092|ref|ZP_07252633.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tomato K40] gi|302131292|ref|ZP_07257282.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852418|gb|AAO55492.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. tomato str. DC3000] gi|213927846|gb|EEB61393.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. tomato T1] Length = 258 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q S Sbjct: 15 SFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQAL----DLS 70 Query: 71 KLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+++ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 71 GLLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQFF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L ++ H LV+S+ T+P+G L N F N L LRL P Sbjct: 131 TMLVTLLFLSMNGHLVALEILVESFTTMPVGGGLLVNN-FWELANGLGWALSAGLRLVLP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+ Sbjct: 190 AVTALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQ 241 >gi|85859182|ref|YP_461384.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] gi|85722273|gb|ABC77216.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] Length = 259 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 113/236 (47%), Gaps = 3/236 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSY-IPMQVRLCFAMAFSIVLLPFLWDTIDL 60 I+PE I +F I RV S I+++P IP+ ++ ++ + +L PF+ Sbjct: 5 VITPEQIACLIF-IFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMDFGF 63 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q + +++ E+ +G + G + R G+QF G +I +G ++ + S Sbjct: 64 Q-LMELTPMVVIMIGEILIGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTSTQ 122 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + ++ L + +L ++ HH A+ +S+ I Q + + + F+ Sbjct: 123 VSLISQLKYFLAMLVFLAVNAHHIFLSAMAESFVRISPMQFHLTERVIAPLCLLSMEVFI 182 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 I +++S+P + I ++++G++ + VPQI I+ + P I LG +FL LS I V Sbjct: 183 IAVKISAPVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFV 238 >gi|206603140|gb|EDZ39620.1| flagellar biosynthesis protein, FliR [Leptospirillum sp. Group II '5-way CG'] Length = 262 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 6/206 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 ++ RV ++ +P LS +P++++ A+A + ++ P + + + A+ LV Sbjct: 17 VLARVSGLVVSMPVLSGKAVPVRIKALIAVALAFLIEPVVLGNVSPPRLFS-AWLGSLV- 74 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGL 133 E F+G G + + F G + +G L + LAE PL + + Sbjct: 75 TEFFVGVALGFSSYLVFAAVSFAGELAGVQVGFGLVDVIN-PLGLAEVPLLGTFQNSVAF 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF-SSFVNMLQTTFMIMLRLSSPFLFF 192 L H + +AL +SY +P G E F IF ++ + ++ + L++PFL Sbjct: 134 LVFLASGTHEALIWALGRSYAVVPPG-EGRFRTIFYEGYLGVFAHFMVLGITLAAPFLVG 192 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP 218 IV N+++G L++++PQ+ + + P Sbjct: 193 GIVLNLAMGFLSRMMPQMNLISVGFP 218 >gi|147678409|ref|YP_001212624.1| flagellar biosynthesis protein FliR [Pelotomaculum thermopropionicum SI] gi|146274506|dbj|BAF60255.1| flagellar biosynthesis pathway, component FliR [Pelotomaculum thermopropionicum SI] Length = 254 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 102/229 (44%), Gaps = 6/229 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV--NR 66 + + FL+ R + + P ++ +P ++ F +A + V+ P L DL + + Sbjct: 7 LAAFFLVFLRTAAFMTAGPLYALRGVPPLLKAAFCLALAAVIFPVL----DLNEPLPLDA 62 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 Y E LG + G + + + G +I IG ++ T L+ Sbjct: 63 WGYGLAAARETGLGLLLGTAVTMILNSFRMAGQIIDFQIGYSMAALADPQYGTQNTLLSQ 122 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ L+ V+D H+ + LV+SY +P+ + G S + M +F I L++S Sbjct: 123 YLYLLALVFFLVVDGHYSLIAGLVESYRLVPLNAAVFNGAAASVLLRMFSGSFAIALQVS 182 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 +P L ++ ++++G L + PQ+ ++ P I G L L I ++ Sbjct: 183 APVLAVLVICDLTLGFLARTAPQLNVFLTGFPVKIAAGLLTLSFLIPLL 231 >gi|237799250|ref|ZP_04587711.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022105|gb|EGI02162.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 258 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 108/223 (48%), Gaps = 3/223 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + + +P + + +P +VR+ A A ++V+ P L D +Q A L+ ++ Sbjct: 22 RIIALLTTMPVIGTTLVPRRVRMYLAFAITVVVAPALPDMPPVQALDLSALL--LIGEQI 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G GL ++++ G +IST +G+ + + ++ ++ + ++ L Sbjct: 80 IIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTLLVTLLFL 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V LV+S+ ++P+G L N F N L LRL P + ++ N Sbjct: 140 SMNGHLVVLEILVESFTSMPVGSGLLVNN-FWELANGLGWVLGSGLRLVLPAITALLIIN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I+ G++ + PQ+ I+ I P + +G + L +++ I+ Q+ Sbjct: 199 IAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWMTMGDILNQYQ 241 >gi|150390467|ref|YP_001320516.1| flagellar biosynthesis protein FliR [Alkaliphilus metalliredigens QYMF] gi|149950329|gb|ABR48857.1| flagellar biosynthetic protein FliR [Alkaliphilus metalliredigens QYMF] Length = 263 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 104/217 (47%), Gaps = 12/217 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ ++ P S + IPM ++ F++ ++++LP + TI ++F +++ +V Sbjct: 17 LLIVRISGIFIIAPIFSRNNIPMMSKIIFSVFLALIILPLV--TIS-EDFAANTFFALMV 73 Query: 74 --MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E LG G + +Y G ++ T IG + + + D T L + + Sbjct: 74 YAIQEFALGITIGFIGSIYFSTFYLAGMIVDTQIGFGM---VNVFDPQMNTQLPIMGNVY 130 Query: 132 GLL---ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNML-QTTFMIMLRLSS 187 LL ++ HH + A+ SY +PIG + + ++ FM+ +LS+ Sbjct: 131 NLLISLVFLAVNGHHLLIKAMFDSYDVLPIGFQFQVSEALIMHLTIIFMEIFMMAFKLSA 190 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L + N+ +G+L + +PQ+ ++ + P I +G Sbjct: 191 PILATIFLANVLLGILARTMPQMNVFIVGMPLKIIVG 227 >gi|289548903|ref|YP_003473891.1| flagellar biosynthetic protein FliR [Thermocrinis albus DSM 14484] gi|289182520|gb|ADC89764.1| flagellar biosynthetic protein FliR [Thermocrinis albus DSM 14484] Length = 253 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + + L+P ++P ++ + A S+ + F++ D Q A V+ E Sbjct: 21 RVTAFLFLVPFFGKEFLPQTFKVFLSTALSLSI--FMYT--DPQPLSPEAPLLTYVVKEF 76 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 LG V GL++R+ Q G +IS +IGL+ T + + + + + ++ + Sbjct: 77 LLGFVAGLVLRLVFDAAQTAGEIISYSIGLSYAT-LFVPQLAQMSLFSLFLSLLTTVTFL 135 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 I VF ALVKS+ TIP+G + V + +F + R++ P + ++ N Sbjct: 136 QIGGPEVVFLALVKSFQTIPVGSFPLWSLDPQQMVKLFHESFSLGFRVALPLVISTLLVN 195 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + + L+N+L+PQ+ ++ + P + +G + L L +I Sbjct: 196 LGLALINRLIPQVNVFMVGLPLQLMVGYIILFLVFPLI 233 >gi|197120183|ref|YP_002140610.1| flagellar biogenesis protein FliR [Geobacter bemidjiensis Bem] gi|197089543|gb|ACH40814.1| flagellar biogenesis protein FliR [Geobacter bemidjiensis Bem] Length = 261 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/235 (19%), Positives = 104/235 (44%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ L L++ RV +P +P +V++ A ++++ P + + + N + Sbjct: 13 LIPLALVLARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKPHV-VPNVSDSLG 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E +G G + + ++F G ++ T +G+++ + + Sbjct: 72 LMLLVLQETLIGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPATQNNVPTMAIFQ 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 G + L + H +V SY +P+G G + V F+I ++L++P Sbjct: 132 GALATLLFLAFNVHEYFIRGIVDSYRVVPLGAWHVSGGLLKFLVETSTGIFIIAIKLAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++++G++ + P + ++ +S P IG+G + L +S+ + V SF Sbjct: 192 VSVALLATSVALGIVARSFPAMNVFMVSMPLNIGIGFVILGISLPVFVRVLQGSF 246 >gi|158320531|ref|YP_001513038.1| flagellar biosynthesis protein FliR [Alkaliphilus oremlandii OhILAs] gi|158140730|gb|ABW19042.1| flagellar biosynthetic protein FliR [Alkaliphilus oremlandii OhILAs] Length = 262 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI--DLQNFVNRAYYSK 71 LI+ R+ ++ P S + +PM +++ A+ S++LLP + D+ N ++S Sbjct: 18 LILTRLTGLFVISPIFSRANVPMTMKIGLAVTLSLILLPLSIHNVNLDINNIRALIFFST 77 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS-LIGI 130 E +G + G + +Y + G+VI +G + M + A+ P+ S L I Sbjct: 78 ---TEFLIGIIIGFISFIYFSVVYLAGTVIDIQMGFGMVNIMD-PQTNAQMPIMSGLYSI 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPF 189 + L ++ HH + +++ SY +PIG +++ NI + +ML TF + L+LS+P Sbjct: 134 LISLVFLTVNGHHMLIQSIIHSYEVLPIGFQISINQNIITHLTHMLLETFALSLQLSAPI 193 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 L + N+ +G+L + +PQ+ I+ + P I +G + + LS+ Sbjct: 194 LISIFLVNVILGILARTMPQMNIFMVGMPLKIFIGIIIVFLSLS 237 >gi|220903477|ref|YP_002478789.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867776|gb|ACL48111.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 263 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 115/243 (47%), Gaps = 14/243 (5%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +SL L + RV + +LP S + IP+QV+ + F++ + W + L A+ Sbjct: 12 LSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAVTLVFTLGV----WPHLALPGSSMPAHP 67 Query: 70 SKLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA--ETPL 124 LV++ E LG V G+ + +G+Q G ++ +G T + +D L +T + Sbjct: 68 FDLVLMVLGEAVLGLVLGMAVNFLFMGIQAGGELLGFQMGF---TMINFADPLTGNQTGI 124 Query: 125 NSL-IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + + ++ LL +D H + S+ +P G NI +++ F++ L Sbjct: 125 TAFFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPGALFIGSNILWQILHLAAQMFVLAL 184 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++++P + + +++GL+ + PQI I P IG+G F+ L + +I+ +F Sbjct: 185 QIAAPVMVALFMVEVALGLVARTSPQIHIMEFGFPAKIGVGFFFVGLLL-VIMADHVETF 243 Query: 244 LYG 246 + G Sbjct: 244 ILG 246 >gi|163789633|ref|ZP_02184071.1| flagellar biosynthetic protein fliR/B [Carnobacterium sp. AT7] gi|159875165|gb|EDP69231.1| flagellar biosynthetic protein fliR/B [Carnobacterium sp. AT7] Length = 250 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 103/219 (47%), Gaps = 15/219 (6%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFV 64 I + ++ LI RV S I++ PG S +P ++ +M ++ + + ++ Sbjct: 2 NIQLQTIILIFIRVTSFIVVSPGFSFKGLPSVAKIALSMGITLAA----YSAVPVMEQEA 57 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNL----QTSMGISDSLA 120 ++ LV+ E+ LG G + +++ ++ G+ + +G ++ SMGI+ S Sbjct: 58 GTVLFAVLVIKEVLLGIALGFITKLFFTAVEIAGNFVDFQVGFSMGAVYDPSMGINVSY- 116 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTF 179 + + + ++ + HH V +LVKS+ T+PI N G+ + +L F Sbjct: 117 ---YGKIYYWLSMCVFYLTNLHHVVIKSLVKSFTTVPISNS-NLGDFGVEGMMKLLGIIF 172 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 I ++ P + ++ + +GL+++ VPQI + + P Sbjct: 173 EIAFNIAVPMMIVALLTEVILGLISRSVPQINVLILGMP 211 >gi|237755397|ref|ZP_04584024.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium yellowstonense SS-5] gi|237692438|gb|EEP61419.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium yellowstonense SS-5] Length = 257 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 114/226 (50%), Gaps = 8/226 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI R+ + + P +S IP V++ ++F+ + ++++ + + + L+ Sbjct: 14 LIFSRIIAFFLAFPLISSPIIPHNVKVLLVVSFAYFTMLNFNIKLEIKEY-DLLIFLTLI 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGI-SDSLAETPLNSLIGIIG 132 + E+F+G G+++ ++ + +IS +GL T + I + + +T + S + Sbjct: 73 LKEIFIGFSLGMIVNIFIGAFSYAAEIISYLMGL---TVLNIFNPAFGQTSVLSGYFLFL 129 Query: 133 LLALWVIDFHHQVFY-ALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPFL 190 L+ I +Q+F AL KS+ IP+ N N +F + F++ +++ PF+ Sbjct: 130 FYLLFFISGAYQIFIGALFKSFEVIPL-SSFNINNGVFEFIIKKSSDIFLLSFQMAFPFI 188 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +VFNI + L+N+L+PQI ++ + P I +G + L + +I+ Sbjct: 189 LVLLVFNIVLALVNRLIPQINVFIVGLPAQIFIGFVILIFASSLII 234 >gi|212639549|ref|YP_002316069.1| flagellar biosynthesis protein FliR [Anoxybacillus flavithermus WK1] gi|212561029|gb|ACJ34084.1| Flagellar biosynthesis pathway, component FliR [Anoxybacillus flavithermus WK1] Length = 259 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 8/211 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI RV S + +P S +P ++ FA F I L F ++D + Y Sbjct: 12 TFLLIFARVASFFVTMPLFSYRNVPNVHKIGFA--FFISWLMFF--SLDPKPLDIDGTYM 67 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIG 129 L++ E+ +G + GL+ + +Q G I +G + + + A++PL + Sbjct: 68 MLLIKEVLVGLLIGLVAFIIMSAIQIAGGFIDFQMGFAIANVID-PQTGAQSPLMGQYLY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSS 187 I L L ++ HH + + SY IP+ ++FGN I V + Q F+I L+++ Sbjct: 127 TIALFFLLAVNGHHMLLDGIFYSYQFIPLDHLVSFGNEQIAEQVVRLFQAMFVIALQMAI 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + + ++++G++ + VPQ+ I+ I P Sbjct: 187 PIVGCLFLVDVALGIVARTVPQMNIFVIGLP 217 >gi|312962261|ref|ZP_07776753.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens WH6] gi|311283598|gb|EFQ62187.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens WH6] Length = 261 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 106/225 (47%), Gaps = 7/225 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 RV + +M +P + +P ++RL FA+A ++V++P L VN S L+++ Sbjct: 25 RVTAMLMAMPVFGTTLVPRRIRLYFAVAITVVIVPGL----PPMPAVNALDLSALMLIAE 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G + G + ++ G +IS +G+ + + ++ ++ + + ++ L Sbjct: 81 QVLIGAMLGFSLSLFFQAFVIAGQIISIQMGMGFASMVDPTNGVSAAVIGQFLTMLVTLL 140 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H F L +S+ T+P+G L N F V L L L P + +V Sbjct: 141 FLAMNGHLVAFEVLTESFTTLPVGSGLVV-NHFWEVVGRLGWVLGASLLLVLPAITALLV 199 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 NI+ G++ + PQ+ I+ I P + LG + + I+ Q+ Sbjct: 200 VNIAFGVMTRAAPQLNIFSIGFPLTLVLGMWIFWVGMADILNQYQ 244 >gi|91785624|ref|YP_560830.1| flagellar biosynthesis protein FliR [Burkholderia xenovorans LB400] gi|91689578|gb|ABE32778.1| Flagellar biosynthesis protein FliR [Burkholderia xenovorans LB400] Length = 260 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 2/214 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P L +P++V++ A +I++ P L F + +++ + Sbjct: 21 VRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQFTVFSAEGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G+ +++ + TG + +GL T S + L+S + I +L Sbjct: 79 FLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDSQASSSSQVLSSYMNTIAMLVF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 VID H Q+ AL+ ++ ++P+ + + + N T F L LS P + ++ Sbjct: 139 LVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGGTVFSAGLLLSLPVVVALLIT 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 N+++G+LN+ PQI ++ I P I +G L L L Sbjct: 199 NLALGILNRAAPQIGVFQIGFPLTILIGMLLLQL 232 >gi|323705429|ref|ZP_08117004.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium xylanolyticum LX-11] gi|323535331|gb|EGB25107.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium xylanolyticum LX-11] Length = 260 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 7/222 (3%) Query: 13 FLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FLIV R+ +L P +P ++ A SI++ + ID N Y + Sbjct: 14 FLIVFVRMLGIFILTPLFGTKTLPSTFKIGLAFFTSIMIFELVNVKIDANNLYQ---YVE 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V E +G + GL + + G +I +G ++ + + + + + I+ Sbjct: 71 IVFNEFLIGLLIGLSSMISFSAIYLAGQIIDYQLGFSIVNVLAAGEETQVPLIGNFVYIL 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 LL +ID HH++F L +SY IP+G L+ +I + ++ F++ R+S+P + Sbjct: 131 TLLLFLLIDGHHKLFQLLFQSYSMIPVGTPFLHLESINTVITKIVSDMFVLGFRISAPIV 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++ +I++ ++++ +PQ+ ++ I P +G+ +LF+ L Sbjct: 191 VSTLLTDITLSIISRTIPQLNVFMIGMPIKIFVGIFTLFIML 232 >gi|299534769|ref|ZP_07048099.1| flagellar biosynthesis protein FliR [Lysinibacillus fusiformis ZC1] gi|298729857|gb|EFI70402.1| flagellar biosynthesis protein FliR [Lysinibacillus fusiformis ZC1] Length = 257 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 14/232 (6%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ RV + +P S IP QV++ A+ VL ++ TID++ F Y LV Sbjct: 13 LVLVRVSAFFATVPFFSYRTIPPQVKITLAL----VLAWMMYYTIDVEPFAFNDDYILLV 68 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIG 132 M E +G + GL+ + +Q GS I +G + + + A++PL ++ Sbjct: 69 MKEALVGLLLGLMGYIIMSAIQIAGSFIDFQMGFAIANIID-PQTGAQSPLIGQFFNMLA 127 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT----FMIMLRLSSP 188 LL L ID HH + + SY P+ Q +F N +F + TT F I ++++P Sbjct: 128 LLLLLAIDGHHMILNGIYYSYQFFPMDQFPSFMN--ENFPQFIITTFTAVFAIAFQMAAP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 + + ++++G+ K VPQ+ I+ + P IG+ LF +++ I V Q Sbjct: 186 VVATLFLVDLALGITAKTVPQLNIFVVGFPIKIGVSFLVLFTMMAVMIQVIQ 237 >gi|297617156|ref|YP_003702315.1| flagellar biosynthetic protein FliR [Syntrophothermus lipocalidus DSM 12680] gi|297144993|gb|ADI01750.1| flagellar biosynthetic protein FliR [Syntrophothermus lipocalidus DSM 12680] Length = 254 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 5/226 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ RV + P S IP+Q+++ + + ++ ++ N + + Sbjct: 10 LVFARVSGLFLSAPVYSSRQIPVQIKVFLGLLLAAII-TYVRPISTRVELDNTGIFLVAL 68 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 VE+F G GL V +Q G ++ +G + M + + S ++ + Sbjct: 69 AVEVFTGYALGLAGYVLFAAVQLAGQLVDMQMGFGIVNVMDPQSGMQVPLVGSFYYLLAI 128 Query: 134 LALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSF-VNMLQTTFMIMLRLSSPFLF 191 L ID HHQ+ A+ SY IPI G + G F++F V + F++ +++++P + Sbjct: 129 LVFLGIDGHHQLLSAVYHSYDVIPILGAKFQPG--FTAFLVKLGGYMFVLGVKIAAPVVA 186 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 +V + ++G + + VPQ+ I+ + P I G + L L I + V+ Sbjct: 187 ALLVADTALGFMARTVPQMNIFLVGMPLKILGGIVMLLLVIPVYVW 232 >gi|296157444|ref|ZP_06840279.1| flagellar biosynthetic protein FliR [Burkholderia sp. Ch1-1] gi|295892216|gb|EFG71999.1| flagellar biosynthetic protein FliR [Burkholderia sp. Ch1-1] Length = 260 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 101/214 (47%), Gaps = 2/214 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P L +P++V++ A +I++ P L + F + +++ + Sbjct: 21 VRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQVTVFSAEGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G+ +++ + TG + +GL T S + L+S + I +L Sbjct: 79 FLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDSQASSSSQVLSSYMNTIAMLVF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 VID H Q+ AL+ ++ ++P+ + + + N T F L LS P + ++ Sbjct: 139 LVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGSTVFSAGLLLSLPVVVALLIT 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 N+++G+LN+ PQI ++ I P + +G L L L Sbjct: 199 NLALGILNRAAPQIGVFQIGFPLTMLIGMLLLQL 232 >gi|295678049|ref|YP_003606573.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1002] gi|295437892|gb|ADG17062.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1002] Length = 260 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + I P L + +P +V++ A +I++ P + + F + ++ + Sbjct: 21 ARIAALIATAPVLGNTSLPSRVKIGLAAFTTIIVAPTIGALPQVTVFSADGVW--ILANQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G+ +++ + TG I +GL T + + ++ + I +LA Sbjct: 79 FLIGIALGVTMQIVFQAIDATGYFIGLGMGLGFATFFDQQATGSGVVISRYMTTIAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H Q+ ALV ++ ++P+ L + + + N + F L LS P + ++ Sbjct: 139 LAVDGHLQMIAALVTTFQSVPVSANLLAPHGWQTLANWGSSIFSAGLLLSLPVVVALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTP--YLIGL 223 N+++G+LN+ PQI ++ I P L+GL Sbjct: 199 NLALGILNRAAPQIGVFQIGFPLTMLVGL 227 >gi|90415340|ref|ZP_01223274.1| Bacterial export protein, family 1 [marine gamma proteobacterium HTCC2207] gi|90332663|gb|EAS47833.1| Bacterial export protein, family 1 [marine gamma proteobacterium HTCC2207] Length = 256 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 16/227 (7%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFVNRAYYSKLVMVE 76 RV + ++ P S+ + ++VR+ A ++++ P + W ID YS + E Sbjct: 21 RVSAFLLASPFFSLRAVNVRVRVLLAALLTLMIYPLVDWPIID--------PYSAAGLRE 72 Query: 77 LF----LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII- 131 +F +G V G+L+++ L G +S+A+GL + I ++ P+ S II Sbjct: 73 IFNQILIGTVMGMLLQIVNASLVIGGQAVSSAMGLGMANM--IDPNMGNVPVISQFFIIC 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L I H V +++S+ T+P+GQ L + + + F+ L L+ P + Sbjct: 131 STLIFMGIGGHVLVISLILESFKTLPVGQMLAPDMLMAVLLQWSSMIFLGGLLLALPIMV 190 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 + NI +G++ + P + I+ + P +I +G + L S+ I Y+ Sbjct: 191 SLLFVNIGVGVITRAAPALNIFAVGFPAMIMVGMVLLATSMTSIGYR 237 >gi|268589972|ref|ZP_06124193.1| flagellar biosynthetic protein FliR [Providencia rettgeri DSM 1131] gi|291314689|gb|EFE55142.1| flagellar biosynthetic protein FliR [Providencia rettgeri DSM 1131] Length = 259 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 78/160 (48%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G GL +++ ++ G VI +GL+ T + L + +I LL Sbjct: 77 QMVIGVAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRIFNVITLLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + Y +V S+ IPI + F FV T F+ L L+ PF+ +++ Sbjct: 137 FLAFDGHLWLIYIVVNSFELIPIQTAPLNRDGFWVFVQFANTIFINGLMLALPFITLFLI 196 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 N+++G+LN++ PQ+ ++ + P + +G L L I I+ Sbjct: 197 LNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISIL 236 >gi|319649549|ref|ZP_08003705.1| flagellar biosynthetic protein fliR [Bacillus sp. 2_A_57_CT2] gi|317398711|gb|EFV79393.1| flagellar biosynthetic protein fliR [Bacillus sp. 2_A_57_CT2] Length = 258 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 114/237 (48%), Gaps = 9/237 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI RV S +++P S IP ++ + F + + FL +D+ YS Sbjct: 10 AFLLIFVRVTSFFLMMPLFSYRSIPAAHKI--GLGFFLAWIMFL--GMDVPMLEIDGTYS 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIG 129 L++ E +G + G + + +Q G I +G + + + A++PL + Sbjct: 66 LLIIKEALVGLMVGFIAYLILSAIQIAGGFIDFQMGFAIANVID-PQTGAQSPLMGQYLY 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGN--IFSSFVNMLQTTFMIMLRLS 186 I L L ++ HH + + SY IP+ Q ++FG+ + + L T F+I ++S Sbjct: 125 TIALFFLLTVNGHHLMLDGVFYSYDFIPLDQAWISFGDEDMAEYVIKALNTMFVIAFQMS 184 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P IG+ + L + + +++Y S +F Sbjct: 185 IPVVGSLFLVDVALGIVARTVPQLNVFVVGLPLKIGVSFIVLIIVMSVLMYAVSLAF 241 >gi|229591838|ref|YP_002873957.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens SBW25] gi|229363704|emb|CAY51086.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens SBW25] Length = 258 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 110/232 (47%), Gaps = 7/232 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + +M +P + +P ++RL FA+A ++VL+P L VN S Sbjct: 15 SFILPLFRITAMLMAMPVFGTTLVPRRIRLYFAVAITVVLVPGL----PPMPPVNALDLS 70 Query: 71 KLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+++ ++ +G + G ++++ G +IS +G+ + + ++ ++ + + Sbjct: 71 ALMLIAEQVLIGTLLGFSLQLFFQAFVIAGQIISIQMGMGFASMVDPTNGVSAAVIGQFL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L ++ H F L +S+ T+P+G L N F V L L L P Sbjct: 131 TMLVTLLFLAMNGHLVAFEVLTESFTTLPVGSGLVV-NHFWEVVGRLGWVLGASLLLVLP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + +V NI+ G++ + PQ+ I+ I P + LG + + I+ Q+ Sbjct: 190 AITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADILNQYQ 241 >gi|224438386|ref|ZP_03659313.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG 18818] gi|313144828|ref|ZP_07807021.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG 18818] gi|313129859|gb|EFR47476.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG 18818] Length = 258 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 3/234 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+V R P I + VR S+ P T+ + V + + Sbjct: 18 LLVARFSGVFAFFPFFDNQLISINVRAAMVFFMSVAFYPLASYTLPDMSMVEFLFAA--- 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ LG + + +++ L F G +IS +GL + ++ + + LI I+GL Sbjct: 75 LFEILLGFLASVCLQIVFAMLSFGGELISFTMGLTMASAYDPVSGTQKPIVAQLIAILGL 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L +DFHH +F + S P+G + F+ F + ++ P L Sbjct: 135 LIALSLDFHHTIFLIISHSIQATPLGGFVFEPKSVEYFIKAFGNIFAVGFSMAFPILAII 194 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I + + L L+I I++ F + F Sbjct: 195 LLSDIIFGMIMKTHPQFNLLAIGFPVKIAIAFVVLFLTISSIIFTFKNELAKAF 248 >gi|94968668|ref|YP_590716.1| flagellar biosynthetic protein FliR [Candidatus Koribacter versatilis Ellin345] gi|94550718|gb|ABF40642.1| flagellar biosynthetic protein FliR [Candidatus Koribacter versatilis Ellin345] Length = 253 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 114/236 (48%), Gaps = 8/236 (3%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E+ + S+ L+ R+ + ++ P S + IP +V+ + +I+L P ++ ++ Sbjct: 5 EVWVQSIVLVGTRIAALVLFAPFFSHAAIPPRVKGGLVVLLTILLYP----SVISATVLS 60 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-L 124 + +V+ E F+G + GL + +QF G + +GL+L + + + A++P L Sbjct: 61 ASEVVGVVLHETFIGMLIGLSSVLVFEAVQFAGQCLGIEVGLSLVSVLD-PQTQADSPVL 119 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + L+ I LL ++ HH + AL SY IP G G + F + ++ Sbjct: 120 SVLLQTILLLLFLDLNVHHWLLRALADSYRLIPPGAGRLTGVVVQDLFQQAGMIFALGVQ 179 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSIEIIVYQ 238 +++P L ++ +I L K PQ+P+ + P +++GL +L+ L +++ Sbjct: 180 IAAPVLAATLLADIVFAFLAKASPQMPVLLLGMPVKFVLGLTTLWAGLRFWPVIFD 235 >gi|169831896|ref|YP_001717878.1| flagellar biosynthetic protein FliR [Candidatus Desulforudis audaxviator MP104C] gi|169638740|gb|ACA60246.1| flagellar biosynthetic protein FliR [Candidatus Desulforudis audaxviator MP104C] Length = 253 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 4/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRA 67 +++ L+ R+ + I P +M IP V+ A S+ LLP L +F+ Sbjct: 4 LVTFLLVFTRLAAFIAACPVFAMREIPPTVKAGLAFVLSLALLPSAGTAAPPLDSFLG-- 61 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +S + E +G G+ + GL G I IG + M ++ L Sbjct: 62 -FSLALAKEAAVGLGLGIFTSLVFHGLLLAGQYIGFQIGFAIAEMMSPGTEGERAIVSRL 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + L+ ID HH + L KS+ +P+G + F+I L +++ Sbjct: 121 MWLFALVFFVSIDGHHLLIAGLAKSFELVPLGAAVAQMKTTLFMAKAYGGLFVIALTIAA 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + +V + +GL+ ++VPQI ++ + P+ + G L ++I +I + + F Sbjct: 181 PVMAVLLVTDAILGLMVRMVPQINVFMLGFPFKVFAGLFALMVTIPVIGWALTRVF 236 >gi|91200238|emb|CAJ73282.1| similar to flagellar biosynthetic protein FliR [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 106/216 (49%), Gaps = 5/216 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY-YS 70 L L+ RVG ++ P S ++IPM +R+ A+ + +L P L +L + + Sbjct: 16 LMLVFFRVGGILLFAPVFSNTHIPMLLRIAIALILAFILYPNLDK--NLHELPSELIPFG 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-SLAETPLNSLI- 128 +V+ E+ +G + G + G ++S +GL++ S S E P S+ Sbjct: 74 LIVVKEIAIGAIVGFAASILFAAFSMAGYLLSNQMGLDMAVIADPSSLSGDEEPTVSVFY 133 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +I +L L ID HH A+ +S+ +PIG I + +++ +T F+I +++S P Sbjct: 134 NLIAILLLLAIDGHHYFINAIAQSFHAVPIGSFDYTTAILTKILSLFRTLFVIGIKISIP 193 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ +++ L+ K+ +I I+ I+ P I +G Sbjct: 194 AFVVLMLSVVAMALMAKVAKEINIFVIAYPIKIIIG 229 >gi|325525520|gb|EGD03319.1| flagellar biosynthetic protein FliR [Burkholderia sp. TJI49] Length = 260 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/230 (22%), Positives = 105/230 (45%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + +P++V++ A ++++ P L + F + +V+ + Sbjct: 21 VRMLALVATAPVVGHPSVPVRVKIGVAAFMALIVAPTLGAMPPVTVFSAEGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T S A + + + +LA Sbjct: 79 FLIGAAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QVF AL S+ ++P+ L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVFAALAASFQSLPVSAALLHAPGWRTLAAFGATVFGMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI ++ I P + +G L + L + +V S F G Sbjct: 199 NLALGILNRAAPQIGVFQIGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248 >gi|114762170|ref|ZP_01441638.1| flagellar biosynthetic protein FliR [Pelagibaca bermudensis HTCC2601] gi|114545194|gb|EAU48197.1| flagellar biosynthetic protein FliR [Roseovarius sp. HTCC2601] Length = 255 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 103/213 (48%), Gaps = 4/213 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RVG+ + +LPGL +PM+VRL + ++ +LP + L + ++ E Sbjct: 24 RVGAMMAVLPGLGEQTVPMRVRLALGLVLTVTVLPATGADLALPP-PGLGTVAWALVTES 82 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G + GL +R++ LQ GS+ + + +L +G S + + ++ + L L Sbjct: 83 VIGLILGLWLRLFMHALQTAGSIAAQST--SLAQLLGNSAADPMPAIGHVLTVAALALLM 140 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 FH +V ++ S+ P + I + + F + L++PF+ ++N Sbjct: 141 STGFHVKVAGFIILSFELFPALLLPDPSLIAQAGRGHIAMAFALAFTLAAPFVILSALYN 200 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 +++G +NK +PQ+ + F+ P +I GS+ L L Sbjct: 201 LTLGFINKAMPQLMVAFVGAP-VITFGSIALLL 232 >gi|46581636|ref|YP_012444.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str. Hildenborough] gi|120601205|ref|YP_965605.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris DP4] gi|46451059|gb|AAS97704.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str. Hildenborough] gi|120561434|gb|ABM27178.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris DP4] gi|311235278|gb|ADP88132.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris RCH1] Length = 263 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 111/237 (46%), Gaps = 18/237 (7%) Query: 18 RVGSCIMLLPGLSMSYIPMQVR--LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 RV + LLP +PMQV+ LC MA + LW + L V ++ +LV++ Sbjct: 20 RVSLVMFLLPFFGGDAVPMQVKVALCLVMAMA------LWPRLSLAGAVMPSHPFELVVM 73 Query: 76 ---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN---SLIG 129 EL LG V G+ + G+Q G ++ +G T + I+D L+ ++ + Sbjct: 74 LASELVLGLVLGMAVHFLFAGIQTGGQLLGFQMGF---TMISIADPLSGAQISITSHFLY 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ LL +D H + A +S+ +P G + + + V + F+I +++++P Sbjct: 131 MVSLLTFLALDGHLFLLRAFAESFALVPAGGLVANPAVANELVRLAGGMFVIAVKIAAPV 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 L + +++ L+ + PQ+ + I P I +G F+ L I+ Q+ F+ G Sbjct: 191 LVTLFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFMGLLFTILA-QYIEEFIIG 246 >gi|206889278|ref|YP_002249864.1| putative flagellar biosynthetic protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741216|gb|ACI20273.1| putative flagellar biosynthetic protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 243 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 106/231 (45%), Gaps = 16/231 (6%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + RV + LP + +P+ R FA++ S+ ++PF+ + +N + + + + Sbjct: 17 VFIRVSIILFFLPYIGSRTVPIMFRFFFALSISLAIIPFI--HVKEENLLISLFNAVV-- 72 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 G G+++RV ++ +S IG + PL+ + + Sbjct: 73 ----FGMAIGIMVRVIIAAVEIASQWMSMQIGFTIANVFNPQFGELMGPLSIFYEMFTIA 128 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS-SFVNMLQTTFMIMLRLSSPFLFFY 193 + +D H +VK++ PI + GNI + S++ F + L+L++P L Sbjct: 129 LFFSLDLHLSFVEMIVKTF-EFPIKFSFS-GNIIAFSYI-----MFPLALKLAAPVLLVQ 181 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ NI +G L++++PQ ++F+ P L+ G + LSI I S +F+ Sbjct: 182 VLMNIGLGFLSRIMPQANVFFVGFPLLLATGIAVMWLSIPIFTMVLSKAFI 232 >gi|167579279|ref|ZP_02372153.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis TXDOH] Length = 260 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + L P P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +PI +L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|304316891|ref|YP_003852036.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778393|gb|ADL68952.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 260 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 7/222 (3%) Query: 13 FLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FLIV R+ +L P +P ++ A SI++ + ID N Y Sbjct: 14 FLIVFVRMLGIFILTPLFGTRSLPSMFKIGLAFFTSIIMFDLVKVNIDANNLYQ---YVV 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V E +G + GL V + G +I +G ++ + + + + + I+ Sbjct: 71 IVFNEFLVGLLIGLASMVSFSAIYLAGQIIDYQLGFSIVNVLAAGEETQVPLVGNFVYIL 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 LL +I+ HH++F L +SY IP+G L+ +I F ++ F++ R+S+P + Sbjct: 131 TLLLFLLINGHHKLFVILFQSYSLIPVGTAFLHSESINVVFTKIVSDMFVLGFRISAPIV 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++ +I++ ++++ +PQ+ ++ I P IG+ +LF+ L Sbjct: 191 LSTLLTDITLSIISRTIPQLNVFMIGMPIKIFIGIFTLFIML 232 >gi|254436544|ref|ZP_05050038.1| flagellar biosynthetic protein FliR [Octadecabacter antarcticus 307] gi|198251990|gb|EDY76304.1| flagellar biosynthetic protein FliR [Octadecabacter antarcticus 307] Length = 275 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 109/239 (45%), Gaps = 28/239 (11%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFA--MAFSIVLLPFLWDTIDLQNFVNR 66 M+ FL + R+ + M P + IP+Q R+ + +AFS L+ I++ + Sbjct: 26 MLIFFLHILRLSAFFMAAPFFGAAAIPVQARIIISVLIAFS------LYGLIEVPDPNQL 79 Query: 67 AYYS--KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + ++V++E+ +G GL + + G I+ + GL + +S +TP+ Sbjct: 80 PFLALIEVVLIEIAIGVSLGLTFTILFASVAMAGEQIAISAGLGFAAQVD-PNSGGQTPV 138 Query: 125 -NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + + + + A ++ H V + S+ +P+G+ NF + S + F+I Sbjct: 139 VSQFLNLFAIAAFLSLNGHLHVIGVIRMSFEILPLGEPFNFSGLISGGLTAGGHMFVIAS 198 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQ----------------IPIYFISTPYLIGLGSL 226 RL+ P + ++ NI++G++ + PQ + +YF +TP+ G+ + Sbjct: 199 RLALPIVSILLLANITVGVVTRSAPQLNLFSFGFPLTILTCFVALYFSTTPFAAGIADM 257 >gi|161523218|ref|YP_001578230.1| flagellar biosynthetic protein FliR [Burkholderia multivorans ATCC 17616] gi|189348925|ref|YP_001944553.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC 17616] gi|221214542|ref|ZP_03587512.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD1] gi|160340647|gb|ABX13733.1| flagellar biosynthetic protein FliR [Burkholderia multivorans ATCC 17616] gi|189332947|dbj|BAG42017.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC 17616] gi|221165432|gb|EED97908.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD1] Length = 260 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/230 (21%), Positives = 105/230 (45%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P +V++ A ++++ P L + F + +V+ + Sbjct: 21 VRMLALVATAPVVGHASVPARVKIGVAAFMALIVAPTLGPMPAVTVFSAEGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T S A + + + +LA Sbjct: 79 FLIGTAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QV AL S+ ++P+ +L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVLAALTASFQSLPVSADLLHAPGWRTLATFGATVFGMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI ++ + P + +G L + L + +V S F G Sbjct: 199 NLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248 >gi|167617385|ref|ZP_02386016.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis Bt4] Length = 260 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + L P P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAVEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +PI +L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|312126837|ref|YP_003991711.1| flagellar biosynthetic protein flir [Caldicellulosiruptor hydrothermalis 108] gi|311776856|gb|ADQ06342.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor hydrothermalis 108] Length = 260 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 4/219 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL++ R+ + P IP ++ FA S++++ + + N Y Sbjct: 16 FLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIFA 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E +G + G + + + G +I AIG + + + L + + + Sbjct: 74 VIKEFIVGLLVGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFLYLYM 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS-SFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A+V SY +PIG E +F + F+ SF+ F+I + +S P L Sbjct: 134 LVVFFGTDAHHLLIRAVVYSYKLVPIGHE-SFRSEFTWSFLRFFSELFLIGVEISLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++ +I + +L++ VPQ+ ++ + P I +G L L + Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVI 231 >gi|320107035|ref|YP_004182625.1| type III secretion system inner membrane R protein [Terriglobus saanensis SP1PR4] gi|319925556|gb|ADV82631.1| type III secretion system inner membrane R protein [Terriglobus saanensis SP1PR4] Length = 262 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 12/222 (5%) Query: 4 SPEI------IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT 57 SPEI I+ S L++ R+G I L P + IP ++++ F +A +I+L P Sbjct: 8 SPEILNPWAHILASGTLVMVRLGGVIALAPPFNSPGIPPRIKVGFLLAMTILLAPIAAGI 67 Query: 58 IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117 + V+ S V+ E+ +G + G + + L F GS++ + +L + + Sbjct: 68 PEAH--VDLEITS--VLGEMAVGLLFGFSLTLLNEALLFAGSLLGISFSFSLANLLD-PN 122 Query: 118 SLAETP-LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ 176 S +TP L L+ G+L ++ + A+++S +P+G+ V M+ Sbjct: 123 SRVDTPVLGILLNWFGILIIFGAGLDRLILAAVMRSLAVVPLGRATMHLGAVHQCVAMIS 182 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F L+L++P + + +++ L+++ P +P + P Sbjct: 183 GVFFAGLQLATPIMAAALAVEVTVALISRFAPALPAQVVGIP 224 >gi|326791524|ref|YP_004309345.1| flagellar biosynthetic protein FliR [Clostridium lentocellum DSM 5427] gi|326542288|gb|ADZ84147.1| flagellar biosynthetic protein FliR [Clostridium lentocellum DSM 5427] Length = 261 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 7/210 (3%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVR--LCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 L +I CR+ + ++ LP + S IP LC +A ++ ++ L ++ Y Sbjct: 14 LLIIFCRIIAAVLFLPIIEESRIPKLATSGLCLCLAITVFMVTDLGQIYYEPTLIS---Y 70 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + L++ E +G + G ++++Y QF GS+ ST GL + ++ + +TP+ Sbjct: 71 TILLLKETLVGLIIGFVLKIYFQIYQFIGSLWSTQGGLGMSMALDPVGGV-QTPVLGRFY 129 Query: 130 IIGLLALWVIDF-HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L A++V+ +H L+ ++ IPI + + ++ + ++ + +I L+ P Sbjct: 130 NLCLCAIFVLSGGYHWFIKTLIDTFTLIPINKGVFGTHLVTGIIDTVGNYLLISFELAMP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 L I+ + +G+L + VPQ+ ++ I P Sbjct: 190 VLGLLILIDFGLGILARTVPQMNMFVIGIP 219 >gi|322421719|ref|YP_004200942.1| flagellar biosynthetic protein FliR [Geobacter sp. M18] gi|320128106|gb|ADW15666.1| flagellar biosynthetic protein FliR [Geobacter sp. M18] Length = 261 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 105/238 (44%), Gaps = 17/238 (7%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVR--LCFAMA---FSIVLL---PFLWDTIDLQNFVN 65 L++ RV M +P +P +V+ L FA+A F I+ L P D++ L Sbjct: 18 LVLARVAGLFMAIPMFGARLVPNRVKAVLIFALALLIFPIIRLHAIPAADDSLSLM---- 73 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 LV+ E +G G + + ++F G ++ T +G+++ + + Sbjct: 74 -----LLVLRESLIGLTLGAISQFVFAAVEFCGQLVGTQMGISIAAQFDPTTQNNVPTMA 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 G + L + HH +V+SY IP+G G + + F+I ++L Sbjct: 129 IFQGALATLIFLSLGVHHFFIRGIVESYQLIPLGAWHTSGGLLKFLIEASTGIFVIGIKL 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++P + ++ +G++ + P + ++ +S P IG+G L L +S+ + + SF Sbjct: 189 AAPVSVALLATSVVLGIVARSFPAMNVFMVSMPLNIGIGFLILGISLPVFLRVLQGSF 246 >gi|317051543|ref|YP_004112659.1| type III secretion system inner membrane R protein [Desulfurispirillum indicum S5] gi|316946627|gb|ADU66103.1| type III secretion system inner membrane R protein [Desulfurispirillum indicum S5] Length = 264 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 13/222 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R S ++ +P L + MQV++ ++ S +L P + V +L++V Sbjct: 22 RTLSIVVSMPVLGGEQVKMQVKIGLSLLVSALLFP----MVSAHGAVIPPNIFELMIVIF 77 Query: 76 -ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+F+G G ++ +QF G ++ +GL++ + ++ + + I +L Sbjct: 78 KEIFIGLAIGFAGQIILGIIQFAGQIMGFQVGLSMSNVLDPMTNIQVPIIGQFLTIFVVL 137 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFV-NMLQTTFMIMLRLSSPFLF 191 + + HH VF L +SY IP+G L+FGN+ F+ V + T F + +++ P +F Sbjct: 138 LFLLANGHHYVFMGLYESYTLIPLGM-LSFGNLGGFAQLVIELAATIFYVGFKITGP-VF 195 Query: 192 FYIVFNISI-GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++ + SI G+L K+VPQI + + P I G L L L I Sbjct: 196 VVVLISQSINGILGKMVPQINLLTVGLPVQIFFGLLTLALVI 237 >gi|330502778|ref|YP_004379647.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina NK-01] gi|328917064|gb|AEB57895.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina NK-01] Length = 258 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/207 (21%), Positives = 102/207 (49%), Gaps = 3/207 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +M++P + +P +VRL A+A S+VL+P L + R+ +++ ++ Sbjct: 22 RIAAMLMVMPIIGTQLVPTRVRLYLALAISVVLVPTLPPMPQVDALSLRSLL--MILEQV 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G + G +++++ G +I+ +GL + + ++ ++ L + ++ L Sbjct: 80 LIGAMFGFILQLFFHLFAVAGQIIAMQMGLGFASMVDPTNGVSVPVLGQFMLMLVTLLFL 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 I+ H V L +S+ ++P GQ + N + + L L L+ P + +V N Sbjct: 140 AINGHLVVLEILAESFISLPPGQGMMV-NHYWTLAGKLSWVIGAGLLLTLPMVTALLVIN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ G++ + PQ+ I+ I P + +G Sbjct: 199 LAFGVMTRAAPQLNIFSIGFPLTLAMG 225 >gi|221201781|ref|ZP_03574818.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2M] gi|221207714|ref|ZP_03580722.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2] gi|221172560|gb|EEE04999.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2] gi|221178201|gb|EEE10611.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2M] Length = 260 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/230 (21%), Positives = 106/230 (46%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P +V++ A ++++ P L + F + + +V+ + Sbjct: 21 VRMLALVATAPVVGHASVPARVKIGVAAFMALIVAPTLGPMPAVTVFSAQGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G I ++GL T S A + + + +LA Sbjct: 79 FLIGTAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAMLAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QV AL S+ ++P+ +L + + T F + L L+ P + ++ Sbjct: 139 LAVDGHLQVVAALTASFQSLPVSADLLHAPGWRTLAAFGATVFGMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQI ++ + P + +G L + L + +V S F G Sbjct: 199 NLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248 >gi|258592486|emb|CBE68795.1| putative Flagellar biosynthetic protein fliR [NC10 bacterium 'Dutch sediment'] Length = 266 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/199 (22%), Positives = 95/199 (47%), Gaps = 2/199 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ R+G + P + S++P+ ++ A++ ++ L P L + L + + + Sbjct: 16 LILFRLGGLFLTAPIFAGSHLPIPFKIGLALSLTVSLYPLLGKSALLARGMEPFSLALSI 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G V GL R+ +G+ G + +GL + + + + + ++ + Sbjct: 76 VGEVAVGVVIGLAARLLFVGVSLAGELAGVQMGLGIANVVDPQFPQQASIVAQFLELMTI 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + HH A+ S+ +IP+G S V + + ++ LRLSSP + Sbjct: 136 LTFLTLHGHHAFLEAVWASFESIPLGTFSGAAAAGAASVLVALFGKSLVLALRLSSPIMV 195 Query: 192 FYIVFNISIGLLNKLVPQI 210 ++ N+++GLL ++ PQ+ Sbjct: 196 AVLITNVAMGLLARVAPQL 214 >gi|78355425|ref|YP_386874.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217830|gb|ABB37179.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 261 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 15/240 (6%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E +S L + R+ + LLP + P V+ M ++ L P L + L Sbjct: 8 EASFLSFLLTLMRISLVVFLLPVFGGNSAPRLVKGALCMVLTLALWPHLSFSGSL--LPG 65 Query: 66 RAYYSKLVMV-ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA--ET 122 + L++ E+ +G + GLL+R + G+Q G ++ +G T + ++D L+ T Sbjct: 66 HPFGIALMLAGEIIMGIMLGLLVRFFFAGIQTGGELLGFQMGF---TMVSVADPLSGQST 122 Query: 123 PLNS-LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT--- 178 ++S + ++ LL V+D H + L S+ +P GQ L F + +S NML Sbjct: 123 SISSHFMYMVSLLIFLVLDGHLVMLKGLTDSFALVPPGQ-LVFRH--ASLHNMLTLAGGM 179 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 F++ + +++P + + +++ L+ + PQ+ + I P IG+G LF+ L I+ +Q Sbjct: 180 FVMAVHIAAPVMAALFLVELALALMGRAAPQMNLLMIGFPLKIGVGFLFMGLLFTIMRHQ 239 >gi|217424090|ref|ZP_03455590.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 576] gi|254184097|ref|ZP_04890688.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1655] gi|184214629|gb|EDU11672.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1655] gi|217393153|gb|EEC33175.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 576] Length = 260 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + + P S P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVAIAPVTSHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +P+ +L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|242280057|ref|YP_002992186.1| flagellar biosynthetic protein FliR [Desulfovibrio salexigens DSM 2638] gi|242122951|gb|ACS80647.1| flagellar biosynthetic protein FliR [Desulfovibrio salexigens DSM 2638] Length = 267 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 108/225 (48%), Gaps = 7/225 (3%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-NFVNRA 67 +MS +L + RV + LLP + IP V+ A +IVL +W + + + + + Sbjct: 11 LMSFYLTLFRVSIVLFLLPFFGGNSIPKTVK----AALTIVLTLGIWPHVTFEGSLMPAS 66 Query: 68 YYSKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 Y+ +M+ E+ LG V G+ + V +Q G++I +G ++ + E Sbjct: 67 PYNIALMILGEMVLGLVMGISVHVMFAAIQTGGNLIGVQMGFSMVNVLDPLTGTNEAVTA 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + +L I+ H + A+V+S+ IP GQ + S +++ + F++ +++ Sbjct: 127 HFLYMCAILVFLSINGHLYLMSAMVESFKYIPPGQIFISSTLTSQIMSISKDLFVLAVKV 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 +SP + V ++ + L++K+ PQ+ + + P I G L L Sbjct: 187 ASPIIATIFVVDLGLALISKMAPQMNVLMLGFPLKILAGFFVLSL 231 >gi|312135836|ref|YP_004003174.1| flagellar biosynthetic protein flir [Caldicellulosiruptor owensensis OL] gi|311775887|gb|ADQ05374.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor owensensis OL] Length = 260 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 10/222 (4%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL++ R+ + P IP ++ FA S+++ T + + N Y + Sbjct: 16 FLVLARMSGLFIASPIFGRRNIPAYFKVGFAFFLSMIVFTAYNFTYSIPD--NVVEYVFV 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP---LNSLIG 129 V+ E +G + G + + + G +I AIG + + D ++E L + + Sbjct: 74 VIKEFIIGLLIGYISYMIFSAILLAGQIIDNAIGFGMAN---VVDPMSEVQVPLLGNFLY 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS-SFVNMLQTTFMIMLRLSSP 188 + L+ + D HH + A+ SY +PIG F F+ SF+ F+I + LS P Sbjct: 131 LYMLVVFFGTDAHHLLIRAIFYSYKLVPIGYG-GFKTEFAWSFLRFFSELFLIGVELSLP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L ++ +I + +L++ VPQ+ ++ + P I +G L L + Sbjct: 190 ILMSMLIVDIILAVLSRAVPQMNVFMVGLPVKIAIGFLVLVI 231 >gi|325920562|ref|ZP_08182484.1| flagellar biosynthetic protein FliR [Xanthomonas gardneri ATCC 19865] gi|325548955|gb|EGD19887.1| flagellar biosynthetic protein FliR [Xanthomonas gardneri ATCC 19865] Length = 263 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A S+VL P L + F +A S V EL Sbjct: 27 RTGALLTAMPLIGTRAVPGRVRVMLAGTLSMVLAPLLPPVPEWDGFTAQAVLS--VAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD PL + G++A W Sbjct: 85 AVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PLRGVTS--GVIAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG + ++F + T F+ +LR Sbjct: 135 FYIGFGLLFFAANGHLAVISLLVDSYKALPIGTAVPDA---AAFAEVAPTLFLQILRGGL 191 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 192 TLALPMMVAMLAVNLAFGALAKAAPAL 218 >gi|152990383|ref|YP_001356105.1| flagellar biosynthetic protein FliR [Nitratiruptor sp. SB155-2] gi|151422244|dbj|BAF69748.1| flagellar biosynthetic protein FliR [Nitratiruptor sp. SB155-2] Length = 255 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 104/213 (48%), Gaps = 6/213 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ RVG+ + LP + +YIP +++ +AFS L+ L D V ++ ++ Sbjct: 13 LVFFRVGAIFLSLPVFNANYIPSNIKILLILAFSFYLIQNLTIYYDFSK-VTLMQFTLMI 71 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL--AETPLNSLIGII 131 + E+ LG GLL+ ++ + +IS +G T + + D + L+ L ++ Sbjct: 72 LKEILLGFSIGLLVSIFVAAFTYAAEIISYFMGF---TIVNVFDPTYGQVSILSRLFIML 128 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + +V D +H +++KS+ IP+ Q + F+ F + +LS PF Sbjct: 129 FFILFFVTDAYHIFIISIIKSFSYIPLVQTSYPDSFFTYLFEKSSLIFTLSFQLSFPFAL 188 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++ L+N+L+PQI ++ + P I +G Sbjct: 189 IVYLINLALALVNRLIPQINVFIVGLPLQIFVG 221 >gi|218778858|ref|YP_002430176.1| flagellar biosynthetic protein FliR [Desulfatibacillum alkenivorans AK-01] gi|218760242|gb|ACL02708.1| Flagellar biosynthetic protein FliR [Desulfatibacillum alkenivorans AK-01] Length = 260 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 10 MSLF-LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M++F LI+ RV + + P + IP+ V+ ++ ++ L P + ++ Q+F + Sbjct: 11 MAVFALILIRVSVILFMFPVFGSNLIPLPVKAGLSLLLTLYLTPIV--QVNPQSFPDTVL 68 Query: 69 YSK-LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +++ E +G L++ + +Q G ++ +G + + L++ Sbjct: 69 EGGVMILCEAVMGLTLSLIVSFFFAAVQVGGQLVGYQMGFAIANVFDPVSGGQMSILSNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L+ V++ HH A+ S+ +P+G +I S + + F + L+++ Sbjct: 129 AFWVTLVLFIVLNGHHIFIRAVAHSFEIVPVGHLYAGRSIMPSMIKLSTDMFTLSLQIAG 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + ++ N + G++ K+VPQI I ++ P +G+G F +S+++I Sbjct: 189 PAIVALLLVNAAFGIVAKVVPQINILIVAFPINVGMGLFFFGVSLQLI 236 >gi|84514804|ref|ZP_01002167.1| Flagellar protein FliR [Loktanella vestfoldensis SKA53] gi|84510963|gb|EAQ07417.1| Flagellar protein FliR [Loktanella vestfoldensis SKA53] Length = 275 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 8/216 (3%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M+ FL R+ + + P + IP+QVR+ ++A + + ID+ + N + Sbjct: 26 MLVFFLHTLRLSAFFLSAPFFGAAAIPVQVRVIVSVAIAFGF----YGLIDVPDPQNLPF 81 Query: 69 YS--KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LN 125 S ++ ++E+ +G GL + + TG I+ + GL M +S +TP ++ Sbjct: 82 LSMIEVALIEVVIGLSLGLAFTIAFSAVALTGEKIAASAGLGFAAQMD-PNSGGQTPVIS 140 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + + A +D H + + SY +P+GQ F + + F I +L Sbjct: 141 QFLNLFAIAAFLSLDGHLHMIGLIRMSYEVLPLGQPFKFSAFITGGLAAAGHMFTIASQL 200 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 P + ++ NI++G++ + PQ+ ++ P I Sbjct: 201 MLPVVSILLLANITVGVVTRSAPQLNLFSFGFPLTI 236 >gi|253996311|ref|YP_003048375.1| flagellar biosynthetic protein FliR [Methylotenera mobilis JLW8] gi|253982990|gb|ACT47848.1| flagellar biosynthetic protein FliR [Methylotenera mobilis JLW8] Length = 263 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 112/226 (49%), Gaps = 7/226 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +SL + R+ + I ++P LS + IP +V+L ++ +I+++P + L F + Sbjct: 14 ISLLWPLTRILAVIAIVPILSHATIPRRVKLGLSVLLTIIIVPTI---PPLPQFEAFSLE 70 Query: 70 SKLVMVE-LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++V+ + +G G +R+ + G +I +GL + T LN L+ Sbjct: 71 GLLILVQQVIIGFAIGFSMRLVFAAVDLAGQLIGLTMGLGFAQFFDPQTNGQSTALNQLL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNML-QTTFMIMLRLSS 187 ++ +L +D H + A+ +S+ T+PIG L I + + + T F L L+ Sbjct: 131 VLLAMLIFLSLDGHLIIVSAMARSFITMPIG--LGGAGIDAMQIALWGNTIFSAGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 P + ++ N+++G+L + PQ+ ++ I P + +G + + LS+ Sbjct: 189 PAVCALLITNMALGILTRTAPQLNLFGIGFPITLSMGFVVVALSLS 234 >gi|121596082|ref|YP_987978.1| flagellar biosynthetic protein FliR [Acidovorax sp. JS42] gi|120608162|gb|ABM43902.1| flagellar biosynthetic protein FliR [Acidovorax sp. JS42] Length = 256 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 12/205 (5%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P SM IP++ R+ A ++ L + + +N + V+ ++ +G G Sbjct: 31 PVFSMRVIPVRTRIGLAFLVAVCAQAVLPEQPVIS--LNSREAAGAVVQQVGIGLAMGFA 88 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 +R+ ++ G +I +GLN + + + + + G I +L VI+ H V Sbjct: 89 VRLVFAAVELAGEIIGLQMGLNFASFFDPASNAQVSAVARFFGNISMLLFVVINGHLMVL 148 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNML-----QTTFMIMLRLSSPFLFFYIVFNISIG 201 A+VKS+ + P+G GN + M + F L ++ P + + N+++G Sbjct: 149 MAVVKSFDSFPVG-----GNFLQAIGQMRLHELGASLFSSALWIALPMIALLLFVNLTLG 203 Query: 202 LLNKLVPQIPIYFISTPYLIGLGSL 226 +++++ PQ+ IY + P + +G L Sbjct: 204 IISRVAPQMNIYAVGFPVTLTVGML 228 >gi|332799193|ref|YP_004460692.1| flagellar biosynthetic protein FliR [Tepidanaerobacter sp. Re1] gi|332696928|gb|AEE91385.1| flagellar biosynthetic protein FliR [Tepidanaerobacter sp. Re1] Length = 258 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/219 (21%), Positives = 103/219 (47%), Gaps = 5/219 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M ++ E+ ++ LI+ R + L P IP Q+++ A S ++ P + + ++L Sbjct: 1 MNVNYEVALIKYLLILFRCLGFLTLTPVFGRREIPFQIKIGLAALLSFIVYPIIPE-LEL 59 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 N N S V+ EL G G + L G +I +G + + S A Sbjct: 60 NN--NLWIVSASVLRELMAGITMGYATFLLFSSLYLAGGIIDLEMGFGMVNVLD-PQSNA 116 Query: 121 ETPL-NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 + PL + I+ +L ++ HH + A++KSY +P+G+ + + + + + F Sbjct: 117 QVPLMGNYYYILTILLFLTVNGHHMLISAIIKSYDLLPLGKPVYQEGLLNVIIVSFKDMF 176 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++ ++++ P + + ++G++ + VPQ+ ++ + P Sbjct: 177 ILGVQIALPVTAIIFLTDFALGIIARTVPQMNVFIVGLP 215 >gi|222112238|ref|YP_002554502.1| flagellar biosynthetic protein flir [Acidovorax ebreus TPSY] gi|221731682|gb|ACM34502.1| flagellar biosynthetic protein FliR [Acidovorax ebreus TPSY] Length = 247 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 12/205 (5%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P SM IP++ R+ A ++ L + + +N + V+ ++ +G G Sbjct: 22 PVFSMRVIPVRTRIGLAFLVAVCAQAVLPEQPVIS--LNSREAAGAVVQQVGIGLAMGFA 79 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 +R+ ++ G +I +GLN + + + + + G I +L VI+ H V Sbjct: 80 VRLVFAAVELAGEIIGLQMGLNFASFFDPASNAQVSAVARFFGNISMLLFVVINGHLMVL 139 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNML-----QTTFMIMLRLSSPFLFFYIVFNISIG 201 A+VKS+ + P+G GN + M + F L ++ P + + N+++G Sbjct: 140 MAVVKSFDSFPVG-----GNFLQAIGQMRLHELGASLFSSALWIALPMIALLLFVNLTLG 194 Query: 202 LLNKLVPQIPIYFISTPYLIGLGSL 226 +++++ PQ+ IY + P + +G L Sbjct: 195 IISRVAPQMNIYAVGFPVTLTVGML 219 >gi|187933790|ref|YP_001885058.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum B str. Eklund 17B] gi|187721943|gb|ACD23164.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B str. Eklund 17B] Length = 613 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 105/215 (48%), Gaps = 13/215 (6%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFVNRAY 68 ++LF I R+ S +++ + P ++ ++ SI +L + + T+ N +N Y Sbjct: 8 LALFFIFLRLTSYFVIVNAFFQTGTPHILKGTLSLIISIAVLAGVDYSTV---NEINNVY 64 Query: 69 YS-----KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 Y VM L LG + ++ V ++F GS + G ++ + + + T Sbjct: 65 YLIIYGLNEVMTGLVLGFITNMIFEV----VKFAGSWMDIHAGFSMVSVLDPTSHSQTTL 120 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + + +I + +++D HH V L++S+ +PIGQ L + + ++ + F++ + Sbjct: 121 IGNFSYMIATVIFFIVDGHHIVIKLLIESFRIVPIGQTLVYQETMMAVISTITEYFVLGV 180 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +++ P + ++ ++ +GL+++ VP IPI P Sbjct: 181 KIAVPIVLIIVITDLCLGLISRTVPTIPIMIFGLP 215 >gi|84624129|ref|YP_451501.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576797|ref|YP_001913726.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576989|ref|YP_001913918.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368069|dbj|BAE69227.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521249|gb|ACD59194.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521441|gb|ACD59386.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae PXO99A] Length = 257 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A ++VL P L + F +A S + EL Sbjct: 21 RTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS--IAREL 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 79 AIGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 128 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG L +F + T F+ +LR Sbjct: 129 FYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAG---AFAEVAPTLFLQILRGGL 185 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L+K P + Sbjct: 186 TLALPMMVAMLAVNLAFGALSKAAPAL 212 >gi|58582236|ref|YP_201252.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426830|gb|AAW75867.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 263 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A ++VL P L + F +A S + EL Sbjct: 27 RTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS--IAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 85 AIGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG L +F + T F+ +LR Sbjct: 135 FYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAG---AFAEVAPTLFLQILRGGL 191 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L+K P + Sbjct: 192 TLALPMMVAMLAVNLAFGALSKAAPAL 218 >gi|119899018|ref|YP_934231.1| flagellar biosynthesis protein FliR [Azoarcus sp. BH72] gi|119671431|emb|CAL95344.1| flagellar biosynthesis protein FliR [Azoarcus sp. BH72] Length = 270 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 7/178 (3%) Query: 72 LVMVE-LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIG 129 LVMV+ +F+G G +IR+ + GS+I +GL+ D+ +T L+ + Sbjct: 73 LVMVQQMFIGIAIGFMIRIVFAAIDMAGSLIGMQMGLSFAVFFD-PDAGGQTAVLSDFLS 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ L I+ H + AL++S+ +PIG + + ++ F L LS P Sbjct: 132 LVATLLFLSINGHLMLVAALIRSFEWLPIGLNVVSASGWAYIARAGAAVFATGLLLSLPI 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE----IIVYQFSHSF 243 + +V NI++G+L + PQ+ ++ I P + +G + L L + ++V F H F Sbjct: 192 VAVLLVANIALGILTRAAPQLNLFAIGFPVTLAMGFMGLILIMTNFGPVVVSLFEHGF 249 >gi|114566402|ref|YP_753556.1| flagellar biosynthetic protein FliR [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337337|gb|ABI68185.1| flagellar biosynthetic protein FliR [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 253 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/209 (21%), Positives = 93/209 (44%), Gaps = 3/209 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S F ++ R+ + P S +P +VR + + L F+ +N + Sbjct: 7 SFFFLLARLSGLFITAPIFSSRMMPGRVRALIVIMLAATLAYFVPVEYS-RNINTPGLFI 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIG 129 + VE+F+G G +I +Q +G ++ +G ++ + S + PL + Sbjct: 66 AALAVEIFIGYTIGFVIYAVLATIQLSGQLMDMLMGFSIVNVVD-PQSGTQIPLMGNFTQ 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + LL ID HH + AL +SY +P+ G V + F++ +++++P Sbjct: 125 ALALLTYLAIDGHHYLLQALAQSYAIVPVMSAHLPGGFLELLVEVGTYIFVVAVKIAAPM 184 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 L + ++++G + + VPQ+ ++ + P Sbjct: 185 LVAILTSDVAMGFIARTVPQMNVFLVGLP 213 >gi|312884813|ref|ZP_07744505.1| putative flagellar biosynthetic protein FliR [Vibrio caribbenthicus ATCC BAA-2122] gi|309367465|gb|EFP95025.1| putative flagellar biosynthetic protein FliR [Vibrio caribbenthicus ATCC BAA-2122] Length = 258 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 9/227 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIV---LLPFLWDTIDLQNFVNRAYYSKLVM 74 R+G+ ++ +P S IP+ VR FA+A +V L+P + +DL +F A + V+ Sbjct: 21 RIGTALISMPFFGDSLIPVWVRSLFALAIVVVSASLMPAM-PKVDLISFSAIALALEQVL 79 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 LF G + L V+T G ++S +GL + + L+ L L I L Sbjct: 80 WGLFFGLILHFLFAVFTT----LGQIVSMQMGLGMAIMNDPVNGLSVPILGRLFLIFCTL 135 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 ++ H + LV+S+ P+G L+ ++ ++ V+++ F + L+ P + + Sbjct: 136 LFLSLEGHLIIIDVLVQSFVIWPVGSGLSALSL-TNLVHLMTWMFASSVALALPAIIAML 194 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + NIS G++N+ P + +Y + P + LG + +SI + +++ Sbjct: 195 LANISFGVMNRAAPALNVYALGFPMTMLLGLFSILISISGVPDKYAE 241 >gi|167900655|ref|ZP_02487860.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei NCTC 13177] Length = 260 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 97/209 (46%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + + P P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +P+ +L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFKLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|146307832|ref|YP_001188297.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina ymp] gi|145576033|gb|ABP85565.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina ymp] Length = 258 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 109/230 (47%), Gaps = 19/230 (8%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+ + +M++P + +P +VRL A+A S+VL+P L +D + + + V++ Sbjct: 22 RIAAMLMVMPIIGTQLVPNRVRLYLALAISVVLVPTLPPMPQVDALSLRSLLLILEQVLI 81 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 G + G +++++ G +I+ +GL + + ++ ++ L + ++ L Sbjct: 82 ----GAMFGFILQLFFHLFAVAGQIIAMQMGLGFASMVDPTNGVSVPVLGQFMLMLVTLL 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 I+ H V L +S+ ++P GQ L G+ + L L L+ P + +V Sbjct: 138 FLAINGHLVVLEVLAESFVSLPPGQGLMIGH-YWELAGKLGWVIGAGLLLTLPMVTALLV 196 Query: 196 FNISIGLLNKLVPQIPIYFISTP---------YLIGL---GSLFLCLSIE 233 N++ G++ + PQ+ I+ I P + IGL GSLF L+ E Sbjct: 197 INLAFGVMTRAAPQLNIFSIGFPLTLAMGLVIFWIGLSDFGSLFQALASE 246 >gi|83721282|ref|YP_440592.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis E264] gi|83655107|gb|ABC39170.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis E264] Length = 260 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + L P P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAVEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF LV S+ +PI +L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAVLVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|188588311|ref|YP_001920219.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum E3 str. Alaska E43] gi|188498592|gb|ACD51728.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E3 str. Alaska E43] Length = 610 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 105/215 (48%), Gaps = 13/215 (6%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFVNRAY 68 ++LF I R+ S +++ + P ++ ++ SI ++ + + T+ N +N Y Sbjct: 8 LALFFIFLRLTSYFVIVNAFFQTGTPHILKGALSLIISIAVIAGVDYSTV---NEINNVY 64 Query: 69 YS-----KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 Y VM L LG + ++ V ++F GS + G ++ + + + T Sbjct: 65 YLIIYGLNEVMTGLVLGFITNMIFEV----VKFAGSWMDIHAGFSMVSVLDPTSHTQSTL 120 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + + +I + +++D HH V L++S+ +PIG+ L + + ++ + F++ + Sbjct: 121 IGNFAYMIATVIFFIVDGHHIVIKLLIESFRIVPIGETLVYQETMMAVISTITEYFVLGV 180 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +++ P + ++ ++ +GL+++ VP IPI P Sbjct: 181 KIAIPIVLIIVITDLCLGLISRTVPTIPIMIFGLP 215 >gi|167834872|ref|ZP_02461755.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis MSMB43] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + + P P++V++ A ++V+ P L + F + + +++ + Sbjct: 21 VRMLALVAIAPVTGHRATPVRVKIGLAGFMALVVTPTLPPMPVVTVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHASGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +PI +L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI ++ + P L+GL Sbjct: 199 NLALGILNRAAPQIGVFQVGFPVTMLVGL 227 >gi|21242685|ref|NP_642267.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108158|gb|AAM36803.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri str. 306] Length = 257 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A ++VL P L + F +A S + EL Sbjct: 21 RTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS--IAREL 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 79 AVGASMGFMLKLMFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 128 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG L +F + T F+ +LR Sbjct: 129 FYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAG---AFAEVAPTLFLQILRGGL 185 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 186 TLALPMMVAMLAVNLAFGALAKAAPAL 212 >gi|126730128|ref|ZP_01745940.1| flagellar biosynthetic protein FliR [Sagittula stellata E-37] gi|126709508|gb|EBA08562.1| flagellar biosynthetic protein FliR [Sagittula stellata E-37] Length = 256 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 71/148 (47%), Gaps = 2/148 (1%) Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + + E G G+++R + +Q G++ + + L+ D L + ++ + Sbjct: 76 RALATETISGLFLGIMLRTFVFAIQTAGAIAAQSTSLSQLLGQAGMDPLPA--IGHILTM 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 GL L FH V +V SY +P + N +I + + +F + L++PF+ Sbjct: 134 AGLALLMATGFHVNVAAFIVLSYDILPFMEFPNAASIAEAGRARVAQSFGLAFSLAAPFV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP 218 +++N+++G +NK +PQ+ + F+ P Sbjct: 194 ILSVIYNLTLGAINKAMPQLMVAFVGAP 221 >gi|126442304|ref|YP_001057089.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 668] gi|126455304|ref|YP_001064319.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1106a] gi|134281514|ref|ZP_01768222.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305] gi|167717399|ref|ZP_02400635.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei DM98] gi|167813517|ref|ZP_02445197.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 91] gi|167843672|ref|ZP_02469180.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei B7210] gi|167892143|ref|ZP_02479545.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 7894] gi|167916914|ref|ZP_02504005.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei BCC215] gi|237814427|ref|YP_002898878.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei MSHR346] gi|242317745|ref|ZP_04816761.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1106b] gi|254194718|ref|ZP_04901149.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei S13] gi|254298635|ref|ZP_04966086.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 406e] gi|126221797|gb|ABN85303.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 668] gi|126228946|gb|ABN92486.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1106a] gi|134247181|gb|EBA47267.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305] gi|157808738|gb|EDO85908.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 406e] gi|169651468|gb|EDS84161.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei S13] gi|237506029|gb|ACQ98347.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei MSHR346] gi|242140984|gb|EES27386.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1106b] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 97/209 (46%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + + P P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +P+ +L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|149928150|ref|ZP_01916396.1| Bacterial export protein, family 1 [Limnobacter sp. MED105] gi|149823135|gb|EDM82373.1| Bacterial export protein, family 1 [Limnobacter sp. MED105] Length = 254 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 106/229 (46%), Gaps = 9/229 (3%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EI + S R+ + + P + + R+ A +I+++P L ++ Sbjct: 10 EIWIASFLWPFIRILAILATAPVFDNRTVQRRTRVGLAALIAILMMPLL----PAPPVLS 65 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL- 124 A +++ ++ +G G +R+ + G ++ +GL + + +TPL Sbjct: 66 SAQAIPVLIQQILIGVAMGFSMRLVFAAFEMAGDLLGLQMGLAFAQFIDPARG-TQTPLI 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT-TFMIML 183 S +G++ +L VID H V A+V+S+ IPI L N S + M + FM+ L Sbjct: 125 GSFLGVLAMLTFLVIDGHLLVIAAVVQSFELIPISANLAVVN--SQSIAMAGSIMFMLAL 182 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++S P + ++ NI +G+L + PQ+ + I IG+G L +S+ Sbjct: 183 QISLPVMAAVLISNIVLGILARAAPQLNVMSIGFSITIGVGLWILWVSL 231 >gi|186477690|ref|YP_001859160.1| flagellar biosynthetic protein FliR [Burkholderia phymatum STM815] gi|184194149|gb|ACC72114.1| flagellar biosynthetic protein FliR [Burkholderia phymatum STM815] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/230 (19%), Positives = 104/230 (45%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P +P +V++ A ++++ P + F + + +++ + Sbjct: 21 VRILALMATAPAFGDKSLPNRVKIGLAGFVTLIVAPTIGALPSATVFSAQGIW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ +Q G +I ++GL T + + ++ + +I +L Sbjct: 79 FLIGAALGFTMQIVFGAVQAAGDIIGMSMGLGFATFFDPHAAGSTDVMSRYVYMIAILTF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H QV ALV+++ +P+ + N + V T L LS P + ++ Sbjct: 139 LALDGHLQVLSALVQTFQALPVSANVLGANGWRVLVGWGSTVVSAGLLLSLPIVTALLIT 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQ+ ++ + P + G L + L + ++ F+ F G Sbjct: 199 NLALGILNRAAPQVGVFQVGLPVTVITGLLLIQLMLPNMMPFFARVFESG 248 >gi|266621913|ref|ZP_06114848.1| putative flagellar protein [Clostridium hathewayi DSM 13479] gi|288866386|gb|EFC98684.1| putative flagellar protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 3/205 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLP-FLWDTIDLQNFVNRAYYSKL 72 L+ R+G I + P + IP V+ + S+V+ P + + +Q + + ++ Sbjct: 14 LVFARMGGLIFVHPVFARRGIPAMVKTGLVLTLSLVIAPTAVQGSAAIQAY-STFQMAEA 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 +M E+ +G V G + +++ + G ++ T GL++ M + + L I + Sbjct: 73 LMREVIMGLVIGSVFQLFFYMIYAAGDLMDTVFGLSMGKIMDPAGGVQTAILGQFIHVFF 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + H +Y IP+G L +I V++ + F+++++L+ PF+ Sbjct: 133 FLYFFATGCHLLTVKLFAYTYEVIPVGAARLVTQDIAWYLVSIFGSVFLMVIKLALPFVA 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFIS 216 V +S+G+L KL+PQI ++ I+ Sbjct: 193 AEFVLEVSMGVLMKLIPQIHVFVIN 217 >gi|78777992|ref|YP_394307.1| flagellar biosynthesis protein FliR [Sulfurimonas denitrificans DSM 1251] gi|78498532|gb|ABB45072.1| Flagellar biosynthesis protein FliR [Sulfurimonas denitrificans DSM 1251] Length = 254 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 98/208 (47%), Gaps = 9/208 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYS 70 L+ R + + +P S + IP+ ++ A F+IV +P L I + + V Sbjct: 17 LLFFRFAALFIAVPIFSHNNIPISIKTSLAFFFTIVFYSSMPPLTMVITVPSIVMA---- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 ++ EL G G+++++ + F G IS +G ++ +++ ++ ++ + + Sbjct: 73 --ILSELLFGLAIGVILQIAFNAITFAGGQISFMMGFSMASAIDPQSGISMPIISQFLSL 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L+ L+ ID HH + + S IP+G + N+F+ + + F++ ++ P Sbjct: 131 MALMMLFAIDMHHWILLFIDSSLQNIPLGGFVMSENLFTYIIKAMSNMFLVGFMIAFPIT 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++ +I G+L K +PQ + I P Sbjct: 191 ALGLLADIIFGMLMKTMPQFNLLVIGFP 218 >gi|312792665|ref|YP_004025588.1| flagellar biosynthetic protein flir [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179805|gb|ADQ39975.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor kristjanssonii 177R1B] Length = 260 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 2/218 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL++ R+ + P IP ++ FA S++++ + + N Y + Sbjct: 16 FLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIFV 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E +G + G + + + G +I AIG + + + L + + Sbjct: 74 VIKEFIVGLLIGYISYMVFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFFYLYM 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L+ + D HH + A+V SY +PIG E SF+ F+I + +S P L Sbjct: 134 LVVFFGTDAHHLLIRAVVYSYKLVPIGYESVKREAALSFLKFFSELFLIGVEISLPILMS 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++ +I + +L++ VPQ+ ++ + P I +G L L + Sbjct: 194 MLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVI 231 >gi|118474587|ref|YP_892577.1| flagellar biosynthesis protein FliR [Campylobacter fetus subsp. fetus 82-40] gi|118413813|gb|ABK82233.1| flagellar biosynthetic protein FliR [Campylobacter fetus subsp. fetus 82-40] Length = 257 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 1/230 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + FL++ R G+ ++ P + IP+ ++ + F+I L P + L+N ++ Y Sbjct: 14 TFFLLLVRTGALMVFFPFFNHMQIPVIIKAVLSFMFAIFLFPLAHAPVGLEN-LSVEYLI 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 EL G G+L+ + LQ G IS +G ++ + + + +++++ Sbjct: 73 LETFSELMFGMCAGVLLMLVFGALQLAGGQISMIMGFSMASVIDPQSGVNMPLISNMLNF 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 I LLA + D HH V + S IP+G NI + F+ +S P L Sbjct: 133 IVLLAFLLFDGHHIVLQFIAYSLQFIPLGGFYPDENIVKYTAKGVINLFLFGFIISFPIL 192 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ ++ G+L K +PQ + + P I + + + I +V F+ Sbjct: 193 ALSLLADLIFGMLMKTMPQFNLLVVGFPIKIAIAFVVIMAIISAMVKLFT 242 >gi|295111380|emb|CBL28130.1| Flagellar biosynthesis pathway, component FliR [Synergistetes bacterium SGP1] Length = 264 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/170 (22%), Positives = 81/170 (47%), Gaps = 4/170 (2%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ +G G L + + L+ G + T IG ++ + + + + L ++GL Sbjct: 79 EVLIGVALGFLSALPLVALRVAGEQVGTVIGFSMAQVLDPTTQTESSIIGQLEFLVGLWF 138 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + + H + A+++S P+G+ L F LQ F++ +R++ PF ++ Sbjct: 139 YYHWNGHLLMIQAVMESVRLAPVGRLLPFPPDLIEVGTWLQDLFILAMRITLPFFCSLVL 198 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLG----SLFLCLSIEIIVYQFSH 241 ++ +G L + VPQ+ I+ + P + LG + L L++++I QF Sbjct: 199 ADVGLGFLARTVPQMNIFVLGLPIKVALGFMVLAAVLPLTVDLIYTQFER 248 >gi|78047542|ref|YP_363717.1| flagellar biosynthesis pathway component FliR [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925987|ref|ZP_08187353.1| flagellar biosynthetic protein FliR [Xanthomonas perforans 91-118] gi|78035972|emb|CAJ23663.1| flagellar biosynthesis pathway component FliR [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543583|gb|EGD15000.1| flagellar biosynthetic protein FliR [Xanthomonas perforans 91-118] Length = 263 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A ++VL P L + F +A S + EL Sbjct: 27 RTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS--IAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 85 AVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG L +F + T F+ +LR Sbjct: 135 FYLGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAG---AFAEVAPTLFLQILRGGL 191 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 192 TLALPMMVAMLAVNLAFGALAKAAPAL 218 >gi|312876515|ref|ZP_07736498.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor lactoaceticus 6A] gi|311796726|gb|EFR13072.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor lactoaceticus 6A] Length = 260 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 2/218 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL++ R+ + P IP ++ FA S++++ + + N Y + Sbjct: 16 FLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIFV 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E +G + G + + + G +I AIG + + + L + + + Sbjct: 74 VIKEFIVGLLIGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFLYLYM 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L+ + D HH + A+V SY +P+G E SF+ F+I + +S P L Sbjct: 134 LVVFFGTDAHHLLIRAVVYSYKLVPLGYESVKKEAALSFLKFFSELFLIGVEISLPILMS 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++ +I + +L++ VPQ+ ++ + P I +G L L + Sbjct: 194 MLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVI 231 >gi|260893862|ref|YP_003239959.1| type III secretion system inner membrane R protein [Ammonifex degensii KC4] gi|260866003|gb|ACX53109.1| type III secretion system inner membrane R protein [Ammonifex degensii KC4] Length = 255 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-ELFLGCVHGL 85 P L++ +P+ RL AM+ S+ + P L D + F A+ L E LG G Sbjct: 27 PPLALPGLPVLWRLGVAMSLSLFVTPLL--PPD-RPFSGGAWEWALTWAGEFTLGLGMGF 83 Query: 86 LIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQV 145 + + L+ G ++ +G + + + + ET L ++G + + D + + Sbjct: 84 VAGLVFQALRVAGQLMGLQMGFGMAELLTLG-GVPETMLAEFFFLLGTVLFFTTDAYQYL 142 Query: 146 FYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNK 205 ALV+SY +P+G G V ++ L+L++P L ++ + S+GLL + Sbjct: 143 IEALVRSYEVLPLGGAAVKGGAIWLTVKLVGGMLATALQLAAPVLAVTVLIDASLGLLVR 202 Query: 206 LVPQIPIYFISTPYLI 221 +VPQI ++ + P I Sbjct: 203 MVPQINVFMLGFPLKI 218 >gi|251779901|ref|ZP_04822821.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084216|gb|EES50106.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 613 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 105/215 (48%), Gaps = 13/215 (6%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFVNRAY 68 ++LF I R+ S +++ + P ++ ++ SI ++ + + T+ N +N Y Sbjct: 8 LALFFIFLRLTSYFVIVNAFFQTGTPHILKGVLSLIISIAVIAGVDYSTV---NEINNVY 64 Query: 69 YS-----KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 Y VM L LG + ++ V ++F GS + G ++ + + + T Sbjct: 65 YLIIYGLNEVMTGLVLGFITNMIFEV----VKFAGSWMDIHAGFSMVSVLDPTSHTQSTL 120 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + + +I + +++D HH V L++S+ +PIG+ L + + ++ + F++ + Sbjct: 121 IGNFAYMIATVIFFIVDGHHIVIKLLIESFRIVPIGETLVYQETMMAVISTITDYFVLGV 180 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +++ P + ++ ++ +GL+++ VP IPI P Sbjct: 181 KIAIPIVLIIVITDLCLGLISRTVPTIPIMIFGLP 215 >gi|294668047|ref|ZP_06733172.1| flagellar biosynthesis pathway component FliR [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601886|gb|EFF45708.1| flagellar biosynthesis pathway component FliR [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 263 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A ++VL P L + F +A S + EL Sbjct: 27 RTGALLTAMPLIGTRTVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS--IAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 85 AVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG L +F + T F+ +LR Sbjct: 135 FYLGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAG---AFAEVAPTLFLQILRGGL 191 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 192 ALALPMMVAMLAVNLAFGALAKAAPAL 218 >gi|308273531|emb|CBX30133.1| hypothetical protein N47_D29420 [uncultured Desulfobacterium sp.] Length = 260 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/223 (18%), Positives = 107/223 (47%), Gaps = 1/223 (0%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 I+ RVG + L+P + IP+ V+ + +++L P + + L++ Sbjct: 17 ILIRVGVILFLMPFFNSRIIPVPVKAGLTIILAMILFPVSGPYTGVYPDTTWGMFG-LII 75 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 EL G + GL+ + + G++ G + IG ++ + + L+++ ++ ++ Sbjct: 76 GELITGMILGLMTQFFFEGIRMMGQIAGMEIGFSIANVLDPQSGFQTSILSNIAYLLAIV 135 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +++ H+ + A+ +S+ I G +F ++ F+I +++ +P + + Sbjct: 136 LFLILNGHYIILNAIRESFAIIQPGSVHLTQQVFKEMLHRSGEMFVIAIQIGAPVISAIL 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 ++ GL+ +L+PQ+ + ++ P I G +F +S+ ++++ Sbjct: 196 FIQLAFGLITRLLPQMNVMVVAFPLQIVTGLIFFGISLWVMLH 238 >gi|89069812|ref|ZP_01157147.1| flagellar biosynthetic protein FliR [Oceanicola granulosus HTCC2516] gi|89044613|gb|EAR50729.1| flagellar biosynthetic protein FliR [Oceanicola granulosus HTCC2516] Length = 254 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/228 (21%), Positives = 104/228 (45%), Gaps = 10/228 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + + P +P+++RL A+A ++V+LP + A ++ E Sbjct: 25 RVAAMAGVFPVFGEQSVPLRLRLAIALALTLVVLPAV-------PLAGGAPGLAALVGEP 77 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGIIGLLAL 136 +G GL +R+ + LQ G++ + + +L G S + P + + + GL Sbjct: 78 LVGLFFGLFLRLIVMALQIAGTIAAQST--SLSQIFGASAGIEPLPAMGHFLVVAGLALA 135 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 ++D H + ++ +Y P+ + V + F L++PFL +++ Sbjct: 136 ALLDLHVRAAAYILLTYELAPVSTVPAAALVAEVGVAEVGRAFRFGFALAAPFLVASLLY 195 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 NI++G++N+ +PQ+ + F+ P + G L +S I++ +S L Sbjct: 196 NITLGVINRAMPQLMVAFVGAPAITAGGLALLAISAPIMLAAWSDRLL 243 >gi|261344132|ref|ZP_05971776.1| flagellar biosynthetic protein FliR [Providencia rustigianii DSM 4541] gi|282567724|gb|EFB73259.1| flagellar biosynthetic protein FliR [Providencia rustigianii DSM 4541] Length = 259 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 80/164 (48%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ ++ +G GL +++ ++ G VI +GL+ T + L + +I Sbjct: 73 VIVQQVVIGTAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRIFNLI 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL D H + Y L S+ IPI + F F+ T F+ L L+ PF+ Sbjct: 133 TLLLFLSFDGHLWLIYILTNSFELIPIQTTPLNRDGFWIFLQFANTIFINGLMLALPFIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 +++ N+++G+LN++ PQ+ ++ + P + +G L L I I+ Sbjct: 193 LFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISIL 236 >gi|224372500|ref|YP_002606872.1| flagellar biosynthesis protein FliR [Nautilia profundicola AmH] gi|223589960|gb|ACM93696.1| flagellar biosynthetic protein FliR [Nautilia profundicola AmH] Length = 255 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/231 (21%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ S + +P + + IPM V+ FA SI+L P T +N A V Sbjct: 17 LLFVRISSFLAFMPFFNYTAIPMNVKAAFAFWLSILLFPI---TPKFAYEINIATVLLSV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G+ +++ L++ G IS +G L M + + T ++ + + Sbjct: 74 LNEVAFAFFVGMALQMVFDVLKYAGEQISFVMGFTLANVMDPNAGVQTTIISQFFTWVAV 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + H L K++ +P G+ ++ N++ F+ + F++ + ++ P + Sbjct: 134 MMFLSFGGDHLEIMFLDKTFAMLPFGEFFSYHNVYEYFITYMSKYFLLGIAMAFPIIAIS 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ +I G++ K +PQ + + P I + + L I ++ FS+ L Sbjct: 194 LMGDIIFGMIMKTMPQFNLLVVGFPIKITISFMVLIAIIASLMQLFSNEIL 244 >gi|222530121|ref|YP_002574003.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor bescii DSM 6725] gi|312621586|ref|YP_004023199.1| flagellar biosynthetic protein flir [Caldicellulosiruptor kronotskyensis 2002] gi|222456968|gb|ACM61230.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor bescii DSM 6725] gi|312202053|gb|ADQ45380.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor kronotskyensis 2002] Length = 260 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 4/219 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL++ R+ ++ P IP ++ FA S++++ + + N Y + Sbjct: 16 FLVLARMSGLFIVSPIFGRRNIPAYFKIGFAFFLSLLVVSTYRFSYSAPS--NLLEYIFV 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E +G + G + + + G +I AIG + + + L + + + Sbjct: 74 VIKEFIVGLLIGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEVQVPLLGNFLYLYM 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS-SFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A++ SY +PIG E F F+ +F F+I + +S P L Sbjct: 134 LVVFFGTDAHHLLIRAVIYSYKLVPIGYE-GFRREFTWNFFRFFSELFLIGVEISLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++ +I + +L++ VPQ+ ++ + P I +G L L + Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVI 231 >gi|160939624|ref|ZP_02086972.1| hypothetical protein CLOBOL_04516 [Clostridium bolteae ATCC BAA-613] gi|158437415|gb|EDP15179.1| hypothetical protein CLOBOL_04516 [Clostridium bolteae ATCC BAA-613] Length = 259 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 19/227 (8%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLP---------FLWDTIDLQNFV 64 L++ R+G + + P S +P VR +A S+++ P + T D+ + Sbjct: 14 LVLARMGGLVFINPVFSRRGVPPMVRTGLVLALSLLIAPGVRSGAGQVMAFSTFDMVESL 73 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 R E+ LG V G + ++ L G + T GL + M + + + L Sbjct: 74 IR---------EVILGLVIGCVFHIFFYMLYVAGDFLDTVFGLAMGKVMDPAGGVQTSIL 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIML 183 + + L + H + SY +P+G + G I + + + F++++ Sbjct: 125 GQFVNVFFYLYFFATGCHLTMVRLFAYSYQVVPVGAGAILGGRILWYIITLFGSVFLMVI 184 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 +L PF+ + +++G+L KL+PQI ++ I+ I LG + + L Sbjct: 185 KLVLPFVAAEFILEMTMGVLMKLIPQIHVFVINIQCKILLGIMLMML 231 >gi|89098626|ref|ZP_01171508.1| flagellar biosynthesis protein R [Bacillus sp. NRRL B-14911] gi|89086588|gb|EAR65707.1| flagellar biosynthesis protein R [Bacillus sp. NRRL B-14911] Length = 260 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 114/240 (47%), Gaps = 15/240 (6%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIP--MQVRLCFAMAFSIVLLPFLWDTIDLQNF-VNRA 67 + LI RV S +L+P S IP ++ L F +A+ I + D F +N A Sbjct: 10 AFLLIFVRVTSFFLLMPLFSYRSIPNTHKIGLGFFLAWII------FYAADAPAFEINGA 63 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NS 126 YY L+M E +G V G + + +Q G +I +G + + + A++PL Sbjct: 64 YY-LLIMKEALVGLVIGFISYLILSAIQIAGGLIDFQMGFAIANVID-PQTGAQSPLMGQ 121 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGN--IFSSFVNMLQTTFMIML 183 + I L L +++ HH + + SY IP+ Q + FG+ + + + F+ Sbjct: 122 YLYTISLFFLLMVNGHHLLIDGIFYSYQAIPLDQPWIPFGDEGMAEYMLRAFNSMFISAF 181 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++S P + + ++++G++ + VPQ+ ++ + P IG+ + L + +++Y S F Sbjct: 182 QMSVPVVGCLFLVDVALGIVARTVPQLNVFVVGIPLKIGVSFIVLVAVMSVLLYVVSQLF 241 >gi|323527704|ref|YP_004229857.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1001] gi|323384706|gb|ADX56797.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1001] Length = 260 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 95/202 (47%), Gaps = 2/202 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P L +P++V++ + +I++ P L + F + +++ + Sbjct: 21 VRILALVATAPVLGNRSLPLRVKIGLSAFVTIIVAPTLGALPQVTVFSAEGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G+ +++ + TG + +GL T S + L+S + I +L Sbjct: 79 FLIGIALGVTMQIVFQAISATGDFVGLGMGLGFATFFDAQASSSSQVLSSYMYTIAMLVF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 VID H Q+ AL+ S+ ++P+ + + + N T F L LS P + ++ Sbjct: 139 LVIDGHLQMISALLASFNSLPVSANILGSPGWRTLANFGSTIFSAGLLLSLPVVAALLIT 198 Query: 197 NISIGLLNKLVPQIPIYFISTP 218 N+++G+LN+ PQI ++ I P Sbjct: 199 NLALGILNRAAPQIGVFQIGFP 220 >gi|307731354|ref|YP_003908578.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1003] gi|307585889|gb|ADN59287.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1003] Length = 260 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 2/202 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P L +P++V++ A +I++ P L + F + +++ + Sbjct: 21 VRILALVATAPVLGNRSLPLRVKIGLAAFVTIIVAPTLGALPQVTVFSAEGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G+ +++ + TG + +GL T S + L+S + I +L Sbjct: 79 FLIGVALGMTMQIVFQAISATGDFVGLGMGLGFATFFNAQASSSSQVLSSYMYTIAMLVF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 VID H Q+ AL+ S+ ++P+ + + + T F L LS P + ++ Sbjct: 139 LVIDGHLQMISALLASFSSLPVSANILGAPGWRTLAGFGSTIFSAGLLLSLPVVAALLIT 198 Query: 197 NISIGLLNKLVPQIPIYFISTP 218 N+++G+LN+ PQI ++ I P Sbjct: 199 NLALGILNRAAPQIGVFQIGFP 220 >gi|163781851|ref|ZP_02176851.1| flagellar biosynthetic protein FliR [Hydrogenivirga sp. 128-5-R1-1] gi|159883071|gb|EDP76575.1| flagellar biosynthetic protein FliR [Hydrogenivirga sp. 128-5-R1-1] Length = 254 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/229 (21%), Positives = 111/229 (48%), Gaps = 7/229 (3%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP--MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++++ L+ RV + + ++P ++P ++V L FA+A SI++ + ++ + Sbjct: 9 LLTILLLFFRVFAFMFMVPMFGTFFLPNIIRVYLAFAVAASILM----FSDLEPLQISSA 64 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +SKL + E+ G + G +R+ + G VI+ GL M + T L Sbjct: 65 LEFSKLALQEVIFGFLSGFFLRLLFDTVFVAGEVIAVNTGLGFLM-MFLPQQPQTTVLAG 123 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ + V+ L +S+ ++PIG + +F+++ +F + ++L+ Sbjct: 124 FSTLMASTLFLAVGGAEAVYVGLAQSFNSVPIGSFDIYSMNGKAFLSLFYKSFSLGVKLA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P L ++ NI + ++N+ +PQI ++ + P + +G L LS+ +I Sbjct: 184 LPVLIAAMLTNIILAVINRFIPQINVFMVGLPLQVMVGLTVLLLSLPVI 232 >gi|257871303|ref|ZP_05650956.1| flagellar biosynthetic protein fliR [Enterococcus gallinarum EG2] gi|257805467|gb|EEV34289.1| flagellar biosynthetic protein fliR [Enterococcus gallinarum EG2] Length = 249 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/203 (20%), Positives = 96/203 (47%), Gaps = 4/203 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI CR+ + ++L P S P ++ MA +++ LP +L F+ + K Sbjct: 9 LIFCRILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPAIPELSLFMMTVFVIK-- 66 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ G G L ++ G++ G +I +G ++ + + +A + + + Sbjct: 67 --EVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTYYWLTI 124 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + +D HH++ AL+ S+ +P+G + G V + ++ + L++P + Sbjct: 125 AVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAPMIIAL 184 Query: 194 IVFNISIGLLNKLVPQIPIYFIS 216 ++ ++ +G++++ +PQI I +S Sbjct: 185 LLVDLVLGVISRSIPQINILMMS 207 >gi|254499124|ref|ZP_05111814.1| putative flagellar biosynthesis pathway, component FliR [Legionella drancourtii LLAP12] gi|254351663|gb|EET10508.1| putative flagellar biosynthesis pathway, component FliR [Legionella drancourtii LLAP12] Length = 249 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 7/225 (3%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SLF I R+G+ ++ P ++ +P+ RL S++L ++ +L N N Sbjct: 8 LTSLFFITIRLGTVLLFTPIQAIRQLPIHARLILIFTLSMLLANYVPQKSELSN--NAIL 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L E G + + Q G +I + G N S+ E + L+ Sbjct: 66 FGGLA--EFANGLILATSLYAAFAIFQIAGQLIDSETGYNATAVFNPSEHSQEPLTSHLL 123 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ +L + +D H +F L S+ IP G F F+ + F + ++SP Sbjct: 124 SMLAVLFFFSLDGHQWLFKGLAYSFIIIPPGTLSLFAG-FTPVIKQFSFMFSMAFMIASP 182 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 + + ++ L+ + +PQ+ YF++ P L GL LF+ L+ Sbjct: 183 IIIALLALDLCGALITRNMPQVSTYFLTLPIKILFGLFLLFMMLN 227 >gi|284041539|ref|YP_003391879.1| flagellar biosynthetic protein FliR [Conexibacter woesei DSM 14684] gi|283945760|gb|ADB48504.1| flagellar biosynthetic protein FliR [Conexibacter woesei DSM 14684] Length = 266 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/207 (18%), Positives = 93/207 (44%), Gaps = 4/207 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY-SK 71 FL++ RV ++ P + +P + R A+AF++ L P + Q A+ Sbjct: 24 FLVLARVSPLFLVAPMFNSRQVPARARTIVALAFALGLYPL---AVAGQTLPTEAFAIVG 80 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G L + V + G+++ +G S+ L + ++ Sbjct: 81 LIVKEMLVGLAFALCVSVMFAAVDAAGTLLDFMVGFAFGGSLDPITGNQSAVLARVYSLV 140 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + I+ + + +++ +P+ +F +I V + T F L +++P L Sbjct: 141 AVAIFIAINGDAWLIQGMSRTFDIVPLSASPDFASISQGVVAVFTTIFASALAVAAPVLI 200 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTP 218 ++ +++ GL++++VPQ+ ++ + P Sbjct: 201 ACVLTDVAFGLVSRVVPQMNVFAVGFP 227 >gi|53717671|ref|YP_106657.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243] gi|76810974|ref|YP_331662.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710b] gi|167908875|ref|ZP_02495966.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 112] gi|254258615|ref|ZP_04949669.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710a] gi|52208085|emb|CAH34015.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243] gi|76580427|gb|ABA49902.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710b] gi|254217304|gb|EET06688.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710a] Length = 260 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + + P P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPIPVATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +P+ L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|167822059|ref|ZP_02453530.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 9] gi|226193326|ref|ZP_03788936.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei Pakistan 9] gi|225934926|gb|EEH30903.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei Pakistan 9] Length = 260 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + + P P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +P+ L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHVQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|330443948|ref|YP_004376934.1| YopT tranlocation T [Chlamydophila pecorum E58] gi|328807058|gb|AEB41231.1| YopT tranlocation T [Chlamydophila pecorum E58] Length = 289 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/227 (20%), Positives = 104/227 (45%), Gaps = 13/227 (5%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 ++P L P +++ +++ ++ P + + N+ N + L++ E+ +G V G Sbjct: 45 IVPFLGAKLFPSPIKIGIGLSWLAIIFPKVLMDTRIANYTNEDLFYILLIKEMIIGIVIG 104 Query: 85 LLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 ++ Q GS I+ G+ L+ S +P +A W + H Sbjct: 105 FILAFPFYAAQSAGSFITNQQGIQGLEGSTSPISIEQTSPHGIFYHYFVTIAFWSLGGHR 164 Query: 144 QVFYALVKSYGTIPIGQELNF---------GNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +F L++S IPI NF I+S+ + + Q + ++ ++LS+P + Sbjct: 165 IIFSLLLQSLEVIPIH---NFFPPQLMSLHAPIWSTLIKICQLSLIMTIQLSAPAALAML 221 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + Sbjct: 222 MSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDY 268 >gi|323490156|ref|ZP_08095376.1| flagellar biosynthesis protein FliR [Planococcus donghaensis MPA1U2] gi|323396204|gb|EGA89030.1| flagellar biosynthesis protein FliR [Planococcus donghaensis MPA1U2] Length = 259 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 20/234 (8%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFA--MAF-SIVLLPFLWDTIDLQNFVNRAYYS 70 L++ R+ S +L P SM +P Q ++ A +AF ++ LP + +TI L + Y Sbjct: 13 LMLVRLTSFFLLAPVFSMRGVPTQFKVGIAAFLAFVAVSTLP-IGETILLDS-----SYI 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG- 129 L++ EL G G + +Q G+ I +G ++ + + A+ P+ IG Sbjct: 67 LLIIKELATGLALGFTAALVLYTVQIAGAFIDFQMGFSMANVLD-PQTGAQVPI---IGH 122 Query: 130 ---IIGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIML 183 ++ LL L ++ HH + +++S P+ + + G+I ++ FMI L Sbjct: 123 FKYMMALLFLLTVNGHHLMLDGVMQSLRVFPVERLAISVEAGDIAQFMTSLFVEMFMIAL 182 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 +++ P + + +I++G+L K VPQ+ I+ + P I +G + L L++ + Y Sbjct: 183 QIALPIVGALFLVDIALGILAKTVPQLNIFAVGLPLKIFVGFIMLFLTMPVFFY 236 >gi|311030113|ref|ZP_07708203.1| flagellar biosynthesis protein FliR [Bacillus sp. m3-13] Length = 258 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 7/236 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ RV + + LP S +P ++ F++V+ ++DL Y Sbjct: 10 AFLLVLTRVTAFFVTLPLFSYRNVPSTFKVGLGFFFALVM----SFSLDLPIIGIDGTYI 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ EL +G + GL+ + +Q G I +G + + + + Sbjct: 66 LLVIKELMVGLLIGLVAYMVLSAIQIAGGFIDFQMGFAIANVIDPQTGIQSPIMGQFFYT 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQE---LNFGNIFSSFVNMLQTTFMIMLRLSS 187 LL L ++ HH + + SY I + Q L +F + + T F+I L+L+ Sbjct: 126 FALLLLLAVNGHHLMMDGIFYSYEMIAVTQAWIPLGEAQVFEFVLKTINTMFVIALQLAI 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P IG+ + + S+ I+ F F Sbjct: 186 PIVGVLFLVDVALGIVARTVPQLNVFVVGLPLKIGVSFITIIFSLTILFTLFYKLF 241 >gi|167560943|ref|ZP_02353859.1| flagellar biosynthetic protein FliR [Burkholderia oklahomensis EO147] gi|167568202|ref|ZP_02361076.1| flagellar biosynthetic protein FliR [Burkholderia oklahomensis C6786] Length = 260 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P P++V++ A ++V+ P L + F + + +++ + Sbjct: 21 VRMLALVATAPVTGHRATPVRVKIGLAGFMALVVAPTLGPMPVVTVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + I +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHASGATPVMGRFLNAIAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +PI L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFRLVPISAGLLRAPGWQTIVAFGAAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|325917836|ref|ZP_08180015.1| flagellar biosynthetic protein FliR [Xanthomonas vesicatoria ATCC 35937] gi|325535947|gb|EGD07764.1| flagellar biosynthetic protein FliR [Xanthomonas vesicatoria ATCC 35937] Length = 263 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A S+VL P L + F +A S + EL Sbjct: 27 RTGALLTAMPLIGTRAVPGRVRVMLAGTLSMVLAPILPPVPEWDGFTAQAVLS--IAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 85 AVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG + +F + T F+ ++R Sbjct: 135 FYIGFGLLFFAANGHLAVISLLVDSYKALPIGTAIPDAR---AFAEVAPTLFLQIMRGGL 191 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 192 TLALPMMVAMLAVNLAFGALAKAAPAL 218 >gi|188496134|ref|ZP_03003404.1| flagellar biosynthetic protein FliR [Escherichia coli 53638] gi|188491333|gb|EDU66436.1| flagellar biosynthetic protein FliR [Escherichia coli 53638] Length = 261 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTQNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|53724241|ref|YP_104208.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 23344] gi|67641566|ref|ZP_00440342.1| flagellar biosynthetic protein FliR [Burkholderia mallei GB8 horse 4] gi|121598912|ref|YP_994548.1| flagellar biosynthetic protein FliR [Burkholderia mallei SAVP1] gi|124384712|ref|YP_001027836.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10229] gi|126448436|ref|YP_001082216.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10247] gi|167001621|ref|ZP_02267415.1| flagellar biosynthetic protein FliR [Burkholderia mallei PRL-20] gi|254175309|ref|ZP_04881970.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 10399] gi|254206623|ref|ZP_04912974.1| flagellar biosynthetic protein FliR [Burkholderia mallei JHU] gi|254357356|ref|ZP_04973630.1| flagellar biosynthetic protein FliR [Burkholderia mallei 2002721280] gi|52427664|gb|AAU48257.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 23344] gi|121227722|gb|ABM50240.1| flagellar biosynthetic protein FliR [Burkholderia mallei SAVP1] gi|124292732|gb|ABN02001.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10229] gi|126241306|gb|ABO04399.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10247] gi|147752165|gb|EDK59231.1| flagellar biosynthetic protein FliR [Burkholderia mallei JHU] gi|148026420|gb|EDK84505.1| flagellar biosynthetic protein FliR [Burkholderia mallei 2002721280] gi|160696354|gb|EDP86324.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 10399] gi|238522519|gb|EEP85963.1| flagellar biosynthetic protein FliR [Burkholderia mallei GB8 horse 4] gi|243062631|gb|EES44817.1| flagellar biosynthetic protein FliR [Burkholderia mallei PRL-20] Length = 260 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 4/209 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + + P P++V++ A ++V+ P L F + + +++ + Sbjct: 21 VRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQGVW--IIVNQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ ++ G +I ++GL T S A + + + +LA Sbjct: 79 FLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QVF ALV S+ +P+ L + + V F + L L+ P + ++ Sbjct: 139 LAFDGHLQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPY--LIGL 223 N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 NLALGILNRAAPQIGIFQVGFPVTMLVGL 227 >gi|24374728|ref|NP_718771.1| flagellar biosynthesis protein FliR [Shewanella oneidensis MR-1] gi|24349388|gb|AAN56215.1|AE015759_7 flagellar biosynthetic protein FliR [Shewanella oneidensis MR-1] Length = 265 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 24/235 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 RV S +M++ + P +VRL A+A ++ + P L D Q F A + ++ +++ Sbjct: 21 RVASMLMVMVVFGAATTPTRVRLLLAIAITLAIAPVLPPVKDAQLFSLSAVFITAQQIII 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V ++++ + L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVTQMVMQTFVL----TGQII------GMQTSLGFASMVDPSSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT---TFMIMLRLS 186 ++ L +D H + LV S+ T+PI N G +S+ ++ + F L +S Sbjct: 131 LLATLIFLAVDGHLLMIRMLVASFDTLPIS---NVGLTLTSYRSLAEWGSYMFGAALTMS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F Sbjct: 188 LSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFDE 242 >gi|187478198|ref|YP_786222.1| flagellar biosynthetic protein [Bordetella avium 197N] gi|115422784|emb|CAJ49312.1| flagellar biosynthetic protein [Bordetella avium 197N] Length = 264 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 15/236 (6%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 I+ VGS P S S IP++V++ A + + P L V+ + Y L++ Sbjct: 23 ILALVGSA----PLFSESTIPVKVKIGLAFMLAAAIAPGL----PPMPSVSPSSYEGLLL 74 Query: 75 V--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G +RV +Q G I +GL+ + L+ + I+ Sbjct: 75 LAQQVLIGVALGFTMRVVFSAVQTAGEYIGLQMGLSFASFFDPGTGANTAVLSRFMNILA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L +D H + ALV+S+ +P+ + N V T F+ L L+ P + Sbjct: 135 MLIFLALDGHLLMLAALVRSFDILPLTPAVLDRNGLGVLVQWGGTVFISGLLLALPLVCA 194 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + N+++G+LN+ PQ+ ++ + P ++ +G L L +V S FL F Sbjct: 195 LLTINLAMGILNRAAPQLTVFAVGFPIMLTIGLLVLS-----VVLPHSGPFLEQLF 245 >gi|255305289|ref|ZP_05349461.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile ATCC 43255] Length = 604 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 3/167 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLL 134 E G + G + + ++ GS++ +GL++ +M +S+ +T L N+L+ L+ Sbjct: 64 ETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSM-INMFDPNSMTQTTLINNLMNWTALM 122 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + +D HH + + S+ IPIG+ NI +N+ F+ +++ P + + Sbjct: 123 IFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNI-DYIINIFVQCFLTGFKIAIPIVLCLL 181 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + +GL+++ VPQ+ + I P I +G +SI +IV Q SH Sbjct: 182 MADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQISH 228 >gi|167736441|ref|ZP_02409215.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 14] Length = 263 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 7/212 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV- 75 R+ + + + P P++V++ A ++V+ P L V + ++ V + Sbjct: 21 VRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTL--PPMPPMPVATVFSAQGVWII 78 Query: 76 --ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + +G G +++ ++ G +I ++GL T S A + + + + Sbjct: 79 VNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGRFLNAVAI 138 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 LA D H QVF ALV S+ +P+ +L + + V F + L L+ P + Sbjct: 139 LAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLALPVVAAL 198 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPY--LIGL 223 ++ N+++G+LN+ PQI I+ + P L+GL Sbjct: 199 LIANLALGILNRAAPQIGIFQVGFPVTMLVGL 230 >gi|306820133|ref|ZP_07453781.1| flagellar biosynthetic protein FliR [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551911|gb|EFM39854.1| flagellar biosynthetic protein FliR [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 260 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 3/223 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ RV +++ P S + IP +++ M S V+LPF+ ++ V+ + + LV Sbjct: 18 LILSRVLGIVIIAPMFSRNNIPAMLKVGLGMILSYVILPFVVPNTNID--VSSSEFIFLV 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + ELF G GL + + G+ IGL++ S T L + Sbjct: 76 VKELFTGFCIGLCMALIFNIFMAAGANADINIGLSMSQIFDSSIGGNTTISGQLFNVFAF 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI-MLRLSSPFLFF 192 L +D HH + A+V S+ +PI + F F+ L ++ + L P + Sbjct: 136 LLFLSLDIHHLMIRAIVNSFEILPINTIDFYKEGFLDFLIRLNAYILVSSILLVVPIIIT 195 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + NI + + K++PQ+ ++ + P+ I +G + LS+ ++ Sbjct: 196 LFLGNILLAFMAKVMPQMNVFIVGMPFKIIVGFVIFYLSLPMV 238 >gi|94314222|ref|YP_587431.1| flagellar biosynthetic protein FliR [Cupriavidus metallidurans CH34] gi|93358074|gb|ABF12162.1| flagellar biosynthetic protein FliR [Cupriavidus metallidurans CH34] Length = 261 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 10/208 (4%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK----LVMVELFLGCV 82 P LS S IP ++++ A A SI++ P + N YS +V+ E+ +G Sbjct: 31 PLLSESTIPRRLKILLAAALSIIISP------TIGNIPTVPVYSLDGLLIVLNEVGIGLS 84 Query: 83 HGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFH 142 G +R+ +Q G VI +GL+ + + L+ + ++ +L +D H Sbjct: 85 MGFAMRLVFAAVQMAGEVIGLQMGLSFASFYDRAAGGQTMVLSRFLNMVAMLLFLALDGH 144 Query: 143 HQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGL 202 + AL+ S+ +PI G+ + F LS P + + N+++G+ Sbjct: 145 LMMLAALIDSFQGLPISGVPLSGHGWGVLARAGSMIFSAGTLLSLPMIAALLTMNLAMGI 204 Query: 203 LNKLVPQIPIYFISTPYLIGLGSLFLCL 230 LN+ PQ+ I+ + P + G L L L Sbjct: 205 LNRASPQLSIFAVGFPVTLLGGMLVLAL 232 >gi|257866392|ref|ZP_05646045.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC30] gi|257873092|ref|ZP_05652745.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC10] gi|257800350|gb|EEV29378.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC30] gi|257807256|gb|EEV36078.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC10] Length = 249 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/203 (20%), Positives = 97/203 (47%), Gaps = 4/203 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI CR+ + ++L P S P ++ MA +++ LP +L F+ + V Sbjct: 9 LIFCRILAFVVLCPIFSQKNFPSLAKIVIGMALTVLCLPTTPAIPELSLFMLTVF----V 64 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G G L ++ G++ G +I +G ++ + + +A + + + Sbjct: 65 IKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTYYWLTI 124 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + +D HH++ AL+ S+ +P+G + G V + ++ + L++P + Sbjct: 125 AVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAPMIIAL 184 Query: 194 IVFNISIGLLNKLVPQIPIYFIS 216 ++ ++ +G++++ +PQI I +S Sbjct: 185 LLVDLVLGVISRSIPQINILMMS 207 >gi|91792696|ref|YP_562347.1| flagellar biosynthesis protein FliR [Shewanella denitrificans OS217] gi|91714698|gb|ABE54624.1| flagellar biosynthetic protein FliR [Shewanella denitrificans OS217] Length = 267 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 109/233 (46%), Gaps = 20/233 (8%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ S +M++ + P +VRL A+AF+ + P L + +++ F A + + + ++ Sbjct: 21 RISSMLMIMAVFGANTTPSRVRLMLAVAFTFAIAPVLPEIKNVELFAFSAVF--ITLQQI 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETPL-NSLIGII 131 +G V G + + TG +I +QTS+G + S +TP+ + ++ Sbjct: 79 LIGAVMGFVTLMLMQTFVLTGQII------GMQTSLGFASMVDPGSGEQTPVVGNFFLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI---GQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L ID H +F +V S+ +IP+ G E+ I + + + F L +S Sbjct: 133 ATLIFLSIDGHLLMFRMIVASFESIPVSNQGIEIANYKILAEWGGYM---FGAALTMSMS 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G L L L++ I+ F Sbjct: 190 AIVALLLINLSFGVMTRAAPQLNIFSIGFPVTMVSGLLILWLTLGPIMAHFDE 242 >gi|166712020|ref|ZP_02243227.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 263 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A ++VL P L + F +A S + EL Sbjct: 27 RTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS--IAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 85 AVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG L +F + T F+ +LR Sbjct: 135 FYIGFGLLFFAANGHLAVIALLVDSYKALPIGTVLPDAG---AFAEVAPTLFLQILRGGL 191 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 192 TLALPMMVAMLAVNLAFGALAKAAPAL 218 >gi|58039958|ref|YP_191922.1| flagellar biosynthetic protein FliR [Gluconobacter oxydans 621H] gi|58002372|gb|AAW61266.1| Flagellar biosynthetic protein FliR [Gluconobacter oxydans 621H] Length = 284 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 111/224 (49%), Gaps = 18/224 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY- 68 ++ L++ R G+ +M++PGL +PM +R A+ +++LLP + + +Q+ ++ Sbjct: 29 LAFVLVLSRTGAVVMVMPGLGEQSMPMMIRAGCAITLTVLLLPLV-APLLMQDHLDALAP 87 Query: 69 --YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN--LQTSMGISDSLAETPL 124 ++ VELF G + G + R+ + L G +I+ +G++ LQ + S + P Sbjct: 88 LGLCGMIAVELFAGILIGWMARLICMALPIAGQIIAVCMGISSVLQPDPDLG-SGSSAPA 146 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN----------FGNIFSSFVNM 174 + ++ L L V + A++ SY IP G L G+ + + Sbjct: 147 R-FLNLLAPLVLLVTGAYILPVRAILGSYSIIPPGGALLAAASHAHWNLLGDSAQGIIQL 205 Query: 175 LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 + +F + L LS+PFL +V+ +G++ +L+P + IY ++P Sbjct: 206 TERSFALGLELSAPFLILSLVWQGMLGIMTRLLPTLQIYNAASP 249 >gi|257876005|ref|ZP_05655658.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC20] gi|325567517|ref|ZP_08144184.1| flagellar biosynthetic protein [Enterococcus casseliflavus ATCC 12755] gi|257810171|gb|EEV38991.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC20] gi|325158950|gb|EGC71096.1| flagellar biosynthetic protein [Enterococcus casseliflavus ATCC 12755] Length = 249 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/203 (20%), Positives = 96/203 (47%), Gaps = 4/203 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI CR+ + ++L P S P ++ MA +++ LP +L F+ + K Sbjct: 9 LIFCRILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPAIPELSLFMLTVFVIK-- 66 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ G G L ++ G++ G +I +G ++ + + +A + + + Sbjct: 67 --EVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTYYWLTI 124 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + +D HH++ AL+ S+ +P+G + G V + ++ + L++P + Sbjct: 125 AVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAPMIIAL 184 Query: 194 IVFNISIGLLNKLVPQIPIYFIS 216 ++ ++ +G++++ +PQI I +S Sbjct: 185 LLVDLVLGVISRSIPQINILMMS 207 >gi|289578416|ref|YP_003477043.1| flagellar biosynthetic protein FliR [Thermoanaerobacter italicus Ab9] gi|297544692|ref|YP_003676994.1| flagellar biosynthetic protein FliR [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528129|gb|ADD02481.1| flagellar biosynthetic protein FliR [Thermoanaerobacter italicus Ab9] gi|296842467|gb|ADH60983.1| flagellar biosynthetic protein FliR [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 260 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 6/171 (3%) Query: 57 TIDLQNFVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGI 115 ++DLQ N + Y +V+ E +G V GL + + G +I +G + + I Sbjct: 58 SVDLQT--NNVFDYFIVVISEFTVGLVIGLASMISFSAIHLAGQLIDYQLGFGIVNILDI 115 Query: 116 SDSLAETPL-NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVN 173 S A+ PL + I I+ +L +++ H+ +F L KS IPIG+ N + Sbjct: 116 H-SEAQVPLMGNFIYILTILIFMLMNGHYILFTMLAKSVDIIPIGEVAFNLSGMSQVMTK 174 Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 M+ F++ R+S+P + ++ ++ +G++++ +PQ+ ++ I P I +G Sbjct: 175 MVSDMFILGFRISAPIILTTLLSDLVLGIISRTIPQLNVFMIGMPAKIFVG 225 >gi|82702486|ref|YP_412052.1| flagellar biosynthetic protein FliR [Nitrosospira multiformis ATCC 25196] gi|82410551|gb|ABB74660.1| flagellar biosynthetic protein FliR [Nitrosospira multiformis ATCC 25196] Length = 260 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/227 (21%), Positives = 106/227 (46%), Gaps = 10/227 (4%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++S F R+ + + + P L +P++V++ + ++V+ P T++ + A Sbjct: 13 LISFFWPAARILALLSVAPVLGNLAVPVRVKVGLGVLVALVVAP----TLESVPKIELAS 68 Query: 69 YSKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L+++ ++ +G G +R+ ++ G + +GL T + L Sbjct: 69 APGLLVLGQQIMIGLAMGFAMRIIFSAIELAGEIAGLQMGLGFATFFTPHSDGSSLVLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRL 185 +G++G LA + H + AL+ S+ PI E F N+ + F + L+L Sbjct: 129 FLGLLGTLAFLSFNGHLLMLSALIDSFNAFPISTE-PFSNMGWKRLAEWGSVIFSVGLQL 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 + P + ++ N+++G+L + PQ+ I+ + P +IG+ +L L L Sbjct: 188 ALPVVAALLIVNLALGILTRASPQLNIFAVGFPITLMIGMSALMLSL 234 >gi|289670561|ref|ZP_06491636.1| flagellar biosynthetic protein FliR [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 257 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A ++VL P L + F ++ S + EL Sbjct: 21 RTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQSVLS--IAREL 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 79 AVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 128 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG L +F + T F+ +LR Sbjct: 129 FYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAG---AFAEVAPTLFLQILRGGL 185 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 186 TLALPMMVAMLAVNLAFGALAKAAPAL 212 >gi|87119471|ref|ZP_01075368.1| flagellar biosynthesis protein [Marinomonas sp. MED121] gi|86164947|gb|EAQ66215.1| flagellar biosynthesis protein [Marinomonas sp. MED121] Length = 260 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 6/217 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN-RAYYSKLVMVE 76 R+G+ ++ LP + ++R+ FA +I++ P ++ + ++ Y+ L+ + Sbjct: 22 RIGAFLLALPLFGTQLVSTRIRIAFAFVIAIIVTP----SVPVPSYDPVSPYFVLLIAEQ 77 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G V G ++ V G + + GL S ++ ++ L + LA Sbjct: 78 IIIGIVLGFVVSVLFQVFSLAGQLAAMKAGLGFAMSNDPANGISVATLGQYYLTMVGLAF 137 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 + D HH +F LV+S+ PIG+ N + V + F L + P +V Sbjct: 138 LLTDGHHVMFEYLVESFDYWPIGEGFN-SEYYYDIVLLGGWMFEKALLMVLPLAIAVLVM 196 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 N+S G++ K PQ+ I+ + P ++ F + +E Sbjct: 197 NLSFGVVAKASPQLNIFALGFPVIMLFSLFFFWIMLE 233 >gi|125973004|ref|YP_001036914.1| flagellar biosynthesis protein FliR [Clostridium thermocellum ATCC 27405] gi|256004801|ref|ZP_05429776.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM 2360] gi|281417215|ref|ZP_06248235.1| flagellar biosynthetic protein FliR [Clostridium thermocellum JW20] gi|125713229|gb|ABN51721.1| type III secretion system inner membrane R protein [Clostridium thermocellum ATCC 27405] gi|255991251|gb|EEU01358.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM 2360] gi|281408617|gb|EFB38875.1| flagellar biosynthetic protein FliR [Clostridium thermocellum JW20] gi|316940760|gb|ADU74794.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM 1313] Length = 261 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 6/221 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN--FVNRAYYSK 71 LI R+ ++ P IP ++ F+ +++L+ +TI +Q F N Y Sbjct: 17 LIFVRMTGLFVIAPIFGSRNIPTYCKIGFSFMTALILV----NTIKVQELYFSNIYEYFI 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G G + + + G I IG + + +S + ++ ++ Sbjct: 73 LVLKEFLVGITLGYVAYMIFTAIYVAGQFIDMQIGFGVVNVIDPLNSTQVSITSNFYFLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L + H+ + AL SY IP+G + ++ + V + F+I ++S+P Sbjct: 133 CMLVFLICRGHYILIRALFASYNYIPVGTGVFGEDMVNDIVRVFGNIFLIAFKISAPITI 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++ +++G+++K VPQ+ ++ + P I LG + ++I Sbjct: 193 SIMISEVALGIVSKTVPQLNVFMVGMPLKIILGLAVMVITI 233 >gi|254433171|ref|ZP_05046679.1| flagellar biosynthetic protein FliR [Nitrosococcus oceani AFC27] gi|207089504|gb|EDZ66775.1| flagellar biosynthetic protein FliR [Nitrosococcus oceani AFC27] Length = 262 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/212 (22%), Positives = 100/212 (47%), Gaps = 11/212 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+G+ +M +P +P+++RL A+A ++V+ P + T V LVM + Sbjct: 20 CRIGALLMAMPLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEGGL---LVMQQ 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G L++++ G +++T +GL + M + +A + ++ L ++ L Sbjct: 77 FLIGFAMALVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQLYTVLITLVF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQEL----NFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ H V L +S+ +P+G E F + + ML + +I L P + Sbjct: 137 LGLNGHLVVIQVLAESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIAL----PAIGA 192 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N++ G++++ PQ+ + I P + LG Sbjct: 193 LSLVNLTFGVMSRAAPQLNPFSIGFPLTLILG 224 >gi|254457578|ref|ZP_05071006.1| flagellar biosynthetic protein FliR [Campylobacterales bacterium GD 1] gi|207086370|gb|EDZ63654.1| flagellar biosynthetic protein FliR [Campylobacterales bacterium GD 1] Length = 255 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 3/205 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R + M P S IPM ++ A F+IV F LQ +N + Sbjct: 18 LLFFRFAALFMAAPIFSHKNIPMTIKTSMAFFFTIV---FYSSMPPLQIDINVPTVVLAI 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + EL G G+++ + + F G IS +G ++ +++ ++ ++ + ++GL Sbjct: 75 LSELLFGLAIGVVLLLAYNVITFAGGQISFMMGFSMASAIDPQTGVSMPIISQFLSLMGL 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + L ID HH + + S IP+G L ++F+ + F++ ++ P + Sbjct: 135 MILLAIDLHHWLLLFIDGSLSAIPLGGFLLTEDLFNYMIKATSNMFIVGFMIAFPIIALS 194 Query: 194 IVFNISIGLLNKLVPQIPIYFISTP 218 + ++ G+L K +PQ + I P Sbjct: 195 WLADVIFGMLMKTMPQFNLLVIGFP 219 >gi|289666113|ref|ZP_06487694.1| flagellar biosynthetic protein FliR [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 263 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ A ++VL P L + F ++ S + EL Sbjct: 27 RTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQSVLS--IAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G ++S + GL+ +SD P+ + G++A W Sbjct: 85 AVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQ---MSD-----PMRGVTS--GVIAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG L +F + T F+ +LR Sbjct: 135 FYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAG---AFAEVAPTLFLQILRGGL 191 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 192 TLALPMMVAMLAVNLAFGALAKAAPAL 218 >gi|317048611|ref|YP_004116259.1| flagellar biosynthetic protein FliR [Pantoea sp. At-9b] gi|316950228|gb|ADU69703.1| flagellar biosynthetic protein FliR [Pantoea sp. At-9b] Length = 262 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 3/217 (1%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P LS IP +V++ A+ + +L+P L ++ F ++ L++ ++ +G GL Sbjct: 31 PVLSEKSIPNRVKIGLAVLTTWILMPLL-PPVETTLFTAAGFW--LLLQQILIGVGLGLT 87 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 ++ ++ G VI +GL+ T L L ++ ++ +L + H + Sbjct: 88 MQFAFGAVRMAGEVIGLQMGLSFATFFDPGSRLNMPVLARILDMLAMLLFLTFNGHLWLI 147 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKL 206 LV S+ T+PI N F + V F+ + L+ P + + N+++GLLN++ Sbjct: 148 SMLVDSFHTMPISDHPLNANAFMALVKAAGLIFLNGMMLALPLIVLLLTLNMALGLLNRV 207 Query: 207 VPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 PQ+ ++ + P + +G L L L + ++ H F Sbjct: 208 TPQLSVFVVGFPITLTVGILSLGLMMPLLAPFCEHLF 244 >gi|114332027|ref|YP_748249.1| flagellar biosynthetic protein FliR [Nitrosomonas eutropha C91] gi|114309041|gb|ABI60284.1| flagellar biosynthetic protein FliR [Nitrosomonas eutropha C91] Length = 266 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 6/231 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P L S IP+QV+L A+ +I++ P L + +++ + Sbjct: 21 ARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPPLPQIDP--GSGVGPIVLLQQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G G IR+ ++ G + +GL T S + G++ L Sbjct: 79 IIIGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQVQLVGRFYGLLATLLF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 ID H QV L +S+ +PIG + F++ VN F + L L+ P L ++ Sbjct: 139 LAIDGHLQVIAVLAQSFTILPIGADGMNVTSFTTLVNWGAEIFTLGLHLALPVLAALLIT 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI----EIIVYQFSHSF 243 N+++G+L + PQ+ I+ + P +G+G L + ++ ++ F SF Sbjct: 199 NLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPVLTQMFQESF 249 >gi|117923328|ref|YP_863945.1| flagellar biosynthetic protein FliR [Magnetococcus sp. MC-1] gi|117607084|gb|ABK42539.1| flagellar biosynthetic protein FliR [Magnetococcus sp. MC-1] Length = 266 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 114/239 (47%), Gaps = 14/239 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAY 68 + LI+ R+ + P S + P ++R+ + +IV+ P + W + V R Sbjct: 19 RMVLIMSRLSGLFLAAPFFSRNVGPKRIRVILLLWITIVIYPIVPPWPG-EGNGEVIRMV 77 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ +V E +G + G++ + +Q G++I +GL++ M + + E L +L+ Sbjct: 78 FTGVV--EFSMGIMIGMIAHWVLVSVQIAGTMIGFEMGLSMAMVMDPTSGVQEGVLANLL 135 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN-----IFSSFVNMLQTTFMIML 183 + GL+ +++ HH + L +S+ ++P+G L G + V+M + ++ Sbjct: 136 YLFGLMLFLLLNGHHWLLEGLARSFVSMPLGSPLPHGEPMITIVLQGIVHMFELALLLAA 195 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + + Y + +GL+N+ PQI ++F++ P +G L + L++ I + + Sbjct: 196 PVVAAAKLLY----LGMGLINRASPQIQVFFLAMPVAQLMGFLIMGLTLSIFGQRLTRE 250 >gi|220932507|ref|YP_002509415.1| flagellar biosynthetic protein FliR [Halothermothrix orenii H 168] gi|219993817|gb|ACL70420.1| flagellar biosynthetic protein FliR [Halothermothrix orenii H 168] Length = 259 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 5/232 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW-DTIDLQNFVNRAYYSKL 72 LI+ R ++ P P++V++ A+ + + LP + T++L Sbjct: 16 LIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQTVELPQQTVGILLD-- 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E +G + G + + +Q G I +G + M + + I+ Sbjct: 74 VIRESLIGFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAPVVGQFKNIMA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L I+ HH + L +S+ IP+ + L G +F+ F+I +++ P + Sbjct: 134 ILVFLAINGHHLLLEGLYRSFQIIPL-RGLTLGSEVFNLLFRTTGNMFIIAFKIALPVMG 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ G L + VPQ+ I+ I P I +G + L LS+ + VY F F Sbjct: 193 TLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFFQDLF 244 >gi|15596645|ref|NP_250139.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PAO1] gi|9947399|gb|AAG04837.1|AE004574_8 flagellar biosynthetic protein FliR [Pseudomonas aeruginosa PAO1] Length = 258 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 105/223 (47%), Gaps = 3/223 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + +M +P + +P++VRL A+ +VL+P L + +A L+ ++ Sbjct: 22 RVAALLMTMPVIGTQLVPVRVRLYLALGVCVVLVPNLPSMPQVDALSMKAML--LIGEQI 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G + G +++ G +IS +GL + + ++ ++ L ++ L Sbjct: 80 LVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANGVSVPVLGQFFTMLVTLLFL 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H VF + +S+ T+P+G+ L+ GN F L L L+ P + +V N Sbjct: 140 AMNGHLVVFEVIAESFVTLPVGEGLS-GNHFWIIAGKLGWVMGAALLLALPAITALLVVN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ G + + PQ+ I+ I P + LG + L + ++ Q+ Sbjct: 199 LAFGAMTRAAPQLNIFSIGFPLTLVLGLVILWIGTADLLSQYQ 241 >gi|239628944|ref|ZP_04671975.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridiales bacterium 1_7_47_FAA] gi|239519090|gb|EEQ58956.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridiales bacterium 1_7_47FAA] Length = 261 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 19/213 (8%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPF---------LWDTIDLQNFV 64 L+ R+G I + P + +P+ VR A+A S+++ P L+ T D+ + Sbjct: 14 LVFARMGGMIFINPVFARKGVPLMVRTGLALALSLLIAPAARAGGQAVVLYSTFDMAEAL 73 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 R EL LG G + +++ L G ++ TA GL + M + + L Sbjct: 74 VR---------ELILGLGIGCVFQLFFYMLYVAGDLLDTAFGLAMGKVMDPMNGVQTAIL 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIML 183 + I L + H +Y IP+G + F N+ + M T F++++ Sbjct: 125 GQFVNIFFFLYFFATGCHLLTVRLFAYTYEVIPVGAGVFFVRNVLWYIITMSATVFLMVI 184 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 +L+ PF+ V +++G+L KL+PQI ++ I+ Sbjct: 185 KLALPFVAAEFVLEMTMGVLMKLIPQIHVFVIN 217 >gi|217033997|ref|ZP_03439419.1| hypothetical protein HP9810_891g1 [Helicobacter pylori 98-10] gi|216943505|gb|EEC22956.1| hypothetical protein HP9810_891g1 [Helicobacter pylori 98-10] Length = 255 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV S + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSSVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|217077043|ref|YP_002334759.1| flagellar biosynthetic protein FliR [Thermosipho africanus TCF52B] gi|217036896|gb|ACJ75418.1| flagellar biosynthetic protein FliR [Thermosipho africanus TCF52B] Length = 254 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 16/211 (7%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 +++ R+ ++ P LS +++P VR +A S + LP + + I L V S + Sbjct: 16 MLISRLTGMFLITPLLSAAFVPTTVRAFLVLALSYMSLPQV-NPIPLDTPVITIVLS--L 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIG 132 + +G GLL G ++ G L T+M ++ ETP+ LI ++ Sbjct: 73 LNNFLIGFAIGLLAYFIFGAFSIAGELLGIESGFGLATAM--DPTMEETPIVGQLIFLLS 130 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFM----IMLRLSS 187 + ++ H V+ +V S T P+ +L+F S V ++T F+ I L++ Sbjct: 131 IFVFISLNGHMVVYQGVVDSIKTFPLYLDKLDF-----SLVKFIETKFIEMFFIALKIGL 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + + + N+ +G+L++LVPQ+ ++ + P Sbjct: 186 PVIGYMFIINVLLGILSRLVPQMNVFMVGIP 216 >gi|107100882|ref|ZP_01364800.1| hypothetical protein PaerPA_01001912 [Pseudomonas aeruginosa PACS2] gi|116049393|ref|YP_791804.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa UCBPP-PA14] gi|218892679|ref|YP_002441548.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa LESB58] gi|254234547|ref|ZP_04927870.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa C3719] gi|254239798|ref|ZP_04933120.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 2192] gi|296390185|ref|ZP_06879660.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PAb1] gi|313106447|ref|ZP_07792678.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 39016] gi|115584614|gb|ABJ10629.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa UCBPP-PA14] gi|126166478|gb|EAZ51989.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa C3719] gi|126193176|gb|EAZ57239.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 2192] gi|218772907|emb|CAW28719.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa LESB58] gi|310879180|gb|EFQ37774.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 39016] Length = 258 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 105/223 (47%), Gaps = 3/223 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + +M +P + +P++VRL A+ +VL+P L + +A L+ ++ Sbjct: 22 RVAALLMTMPVIGTQLVPVRVRLYLALGVCVVLVPNLPPMPQVDALSMKAML--LIGEQI 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G + G +++ G +IS +GL + + ++ ++ L ++ L Sbjct: 80 LVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANGVSVPVLGQFFTMLVTLLFL 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H VF + +S+ T+P+G+ L+ GN F L L L+ P + +V N Sbjct: 140 AMNGHLVVFEVIAESFVTLPVGEGLS-GNHFWIIAGKLGWVMGAALLLALPAITALLVVN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ G + + PQ+ I+ I P + LG + L + ++ Q+ Sbjct: 199 LAFGAMTRAAPQLNIFSIGFPLTLVLGLVILWIGTADLLSQYQ 241 >gi|291278827|ref|YP_003495662.1| flagellar biosynthetic protein FliR [Deferribacter desulfuricans SSM1] gi|290753529|dbj|BAI79906.1| flagellar biosynthetic protein FliR [Deferribacter desulfuricans SSM1] Length = 261 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 2/216 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ FLIV RV + P + +++RL F++ SI+++ + I QN V+ Sbjct: 13 LLTFFLIVIRVSGILFTAPVFGSGVVDVRLRLFFSIIVSILIINNV-SIISFQN-VSTLL 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ EL +G G+L R G+QF G +I +G + + + + + Sbjct: 71 LILLVIKELLIGIATGVLARFIFAGVQFGGQLIGFQMGFGVVNILDPQTNTQVSIIAQFQ 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ +L I H V A+ S+ +P+ + + V + F+ +++ +P Sbjct: 131 NILMILIFLAIGGHLFVIKAISYSFTNVPLAKFTFSSEGYIFLVEKFGSIFLTAIKIIAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ +G++ +LVPQ+ + + P I G Sbjct: 191 VFVTLLLLHVVMGIMARLVPQMNVLIVGFPVQIAFG 226 >gi|188526977|ref|YP_001909664.1| flagellar biosynthesis protein FliR [Helicobacter pylori Shi470] gi|188143217|gb|ACD47634.1| flagellar biosynthesis protein FliR [Helicobacter pylori Shi470] Length = 255 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 11/236 (4%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P L ++ +I G++ K PQ + I P I +G + + L I I+ +F Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRFKEE 243 >gi|146296298|ref|YP_001180069.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409874|gb|ABP66878.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 260 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 66/138 (47%) Query: 97 TGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTI 156 G +I AIG + + + L + + + L+ + D HH + A+V SY + Sbjct: 98 AGQIIDNAIGFGIANVIDPMSEIQVPLLGNFLYLYMLVIFFATDAHHTLIRAVVYSYKVV 157 Query: 157 PIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 P+G + F+ F+I + +S P L ++ +I +G+L++ VPQ+ ++ + Sbjct: 158 PLGYSNILPKLSQKFITFFIELFVIGIEISLPILMSMLIVDIILGILSRAVPQMNVFMVG 217 Query: 217 TPYLIGLGSLFLCLSIEI 234 P I +G + L + + I Sbjct: 218 IPIKIAIGFVVLVIVLPI 235 >gi|300113615|ref|YP_003760190.1| flagellar biosynthetic protein FliR [Nitrosococcus watsonii C-113] gi|299539552|gb|ADJ27869.1| flagellar biosynthetic protein FliR [Nitrosococcus watsonii C-113] Length = 262 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 17/215 (7%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+G+ +M +P +P+++RL A+A ++V+ P + T V LVM + Sbjct: 20 CRIGALLMAMPLFGSKVVPVRIRLMLALALTVVIAPVIPATSVAALSVEGGL---LVMQQ 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G L++++ G +++T +GL + M + +A + ++ L I+ L Sbjct: 77 FLIGLAMTLVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMISQLYTILITLVF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN-------MLQTTFMIMLRLSSPF 189 ++ H V L +S+ +P+G E G SF ML + +I L P Sbjct: 137 LGLNGHLVVIQVLAESFYILPLGVE---GASLGSFWQLAGGGSWMLAGSVLIAL----PA 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + + N++ G++++ PQ+ + I P + LG Sbjct: 190 IGALSLVNLTFGVMSRAAPQLNPFSIGFPLTLLLG 224 >gi|326796453|ref|YP_004314273.1| flagellar biosynthetic protein FliR [Marinomonas mediterranea MMB-1] gi|326547217|gb|ADZ92437.1| flagellar biosynthetic protein FliR [Marinomonas mediterranea MMB-1] Length = 260 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 8/216 (3%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN-R 66 I +S L RVG+ +M LP + +QVR+ FA SI + P +D+ +F Sbjct: 12 ITISFLLPFFRVGAFLMALPLFGSRLVSVQVRILFAFVISIAITP----IVDIPSFDPIS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ +L G V G +I + G + + GL S ++ + + Sbjct: 68 VAFIPLIAEQLLAGFVMGFVITILFQAFSLAGQLAAMKAGLGFAMSNDPANGVTVATMGQ 127 Query: 127 -LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++G LA + HH +F +V+S+ PIG ++ V + F L + Sbjct: 128 YFLSMVG-LAFVGTNGHHVMFEFIVESFDYWPIGSGFALERLWDV-VQLGGWMFEKALLI 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 P ++ N+S G++ K PQ+ I+ + P ++ Sbjct: 186 VLPLTVAVLIMNVSFGVVAKASPQLNIFALGFPVIL 221 >gi|225569960|ref|ZP_03778985.1| hypothetical protein CLOHYLEM_06055 [Clostridium hylemonae DSM 15053] gi|225161430|gb|EEG74049.1| hypothetical protein CLOHYLEM_06055 [Clostridium hylemonae DSM 15053] Length = 257 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 104/214 (48%), Gaps = 6/214 (2%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 +PE ++ +L L+ R+ + L P L IP + A+ ++V+ P + Sbjct: 6 TPEFLVFTLVLM--RMSGFVFLNPILGRKNIPAVFKTGLALVLALVVYP--QAEPAGEEV 61 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 + Y+ L++ E LG + G +++++ + + F GSVI +GL++ T + Sbjct: 62 TSAVVYAVLLLKEFALGYLLGFVMQLFDMVVSFAGSVIDFQMGLSMATVYDAQNGTQIAL 121 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIM 182 +++ I LL + +D H + L+ S +P +L G+ + + + ++ Sbjct: 122 TGNILQIYYLLLFFAVDGHLALLKILMTSQDIVPYAALKLGTGSA-QAVLQIFTECVVLA 180 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 ++L+ P + F + ++ GLL +++PQI ++ +S Sbjct: 181 VKLAFPIIAFEFLVEVATGLLMRIIPQINLFVMS 214 >gi|291613056|ref|YP_003523213.1| flagellar biosynthetic protein FliR [Sideroxydans lithotrophicus ES-1] gi|291583168|gb|ADE10826.1| flagellar biosynthetic protein FliR [Sideroxydans lithotrophicus ES-1] Length = 262 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 103/218 (47%), Gaps = 6/218 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV- 75 R+ + I P + +P ++++ FA+A +I++ P T+D+ ++ A L ++ Sbjct: 21 ARILALIASSPLYGIKEVPARIKVGFAIAITIIIAP----TLDIPANLDPASAQGLFVLV 76 Query: 76 -ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ G + G IR+ + ++ G + +GL + ++ + +GI+ L Sbjct: 77 QQIVAGVIIGFSIRLIFVAVEMAGDLTGMQMGLGFASFYDPVNATFTPIVAQFLGILASL 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 A + H + AL S+ PIG + + F + + F L+ S P + + Sbjct: 137 AFLAANGHLYLLVALADSFRDFPIGATVPSAHAFRTMAEWGGSLFSHALQFSLPLIGALL 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 + NI++G+L + PQ+ I+ + P I +G + L L++ Sbjct: 197 ITNIALGILARSAPQLNIFAVGFPITIAVGFVTLWLTL 234 >gi|258514017|ref|YP_003190239.1| flagellar biosynthesis protein FliR [Desulfotomaculum acetoxidans DSM 771] gi|257777722|gb|ACV61616.1| flagellar biosynthetic protein FliR [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 105/226 (46%), Gaps = 7/226 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ R+ + +M P IP +++ F++ + ++ P + T Y Sbjct: 11 FLVFIRITAFMMTAPFFEYRNIPNLLKIGFSLLLAGIVFPVI-KTSGFSVPGGVLGYILA 69 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 VM E +G + GL+ G++ G +I IG + + D L+E + + Sbjct: 70 VMAEAGVGLMLGLIASFIFHGIRMAGQLIDLQIGFAMAM---VFDPLSEMQTTIIARFLN 126 Query: 133 LLALWV---IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 LLAL ++ H+ + +LVKSY +P+ + + V F + ++S+P Sbjct: 127 LLALIFFLNVNGHYYLIESLVKSYDLVPLTAMAIKSGVVLTVVKFFSGMFALAFQISAPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + ++ ++S+G +++ VPQ+ ++ + P I +G L L + + ++ Sbjct: 187 IAVLVIIDLSLGFVSRTVPQLNVFMLGFPVKIVVGILTLSVVVPVL 232 >gi|193071154|ref|ZP_03052078.1| flagellar biosynthetic protein FliR [Escherichia coli E110019] gi|192955549|gb|EDV86028.1| flagellar biosynthetic protein FliR [Escherichia coli E110019] Length = 261 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 5/213 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS-K 71 F + RV + I P LS +P +V+L AM + + P L D+ F ++++ Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVF---SFFTLW 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 73 LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 193 LLLTQNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|154175030|ref|YP_001407663.1| flagellar biosynthesis protein FliR [Campylobacter curvus 525.92] gi|112803591|gb|EAU00935.1| flagellar biosynthetic protein FliR [Campylobacter curvus 525.92] Length = 253 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 5/211 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ I+ P S + IP+ R IV P NF+ + Sbjct: 17 LLFARLSGLIVFFPFYSYNQIPLTARTLLVFMLCIVFFPMSHAHEHAINFLFVE-----I 71 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E LG GL++ + LQ G IS +G ++ T + + + ++I + L Sbjct: 72 LSEAMLGLCAGLMLTIVFATLQMAGEQISMVMGFSMATVLDPQTGASSPVIANMINFLAL 131 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L + D HH + S +P+G + S + + FM LS P + Sbjct: 132 LTFLMFDGHHLLLQFYAASLAHVPLGDFYPSAGVMSYALKIFANLFMFGFILSFPIIALS 191 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ + G+L K +PQ + + P I +G Sbjct: 192 LLSDSIFGMLMKTMPQFNLLVVGYPIKITIG 222 >gi|224417781|ref|ZP_03655787.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT 98-5491] gi|253827123|ref|ZP_04870008.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313141324|ref|ZP_07803517.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT 98-5491] gi|253510529|gb|EES89188.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313130355|gb|EFR47972.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT 98-5491] Length = 256 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 2/231 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R I P I Q++ F +I+ LP L T+ N + + Sbjct: 17 LLLLRFAGIIAFFPFFENQLINTQIKGIFIFWLTILFLP-LVTTMPPSNLTILEFIIAGI 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ LG + +++ + F G VIS A+GL + + + + L+ ++ L Sbjct: 76 -TEIMLGFLASFALQIVFGMISFGGEVISFAMGLTIANAYDPVTGAQKPIVGQLLTLLAL 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + +D+HH Y + +S IP+G L N + F+I L +S P + Sbjct: 135 MIVLALDYHHLFLYFVGESIKEIPLGGFLYSHNYIIYTIKAFSNLFLIGLTMSFPIIALI 194 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ +I G++ K PQ + I P I + L + I I+ F FL Sbjct: 195 LLSDIIFGMIMKAHPQFNLLAIGFPVKIAVAFAVLIVIIPAIMIHFKREFL 245 >gi|395392|emb|CAA52219.1| flagellar biosynthetic protein [Bacillus subtilis] Length = 259 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/235 (22%), Positives = 111/235 (47%), Gaps = 12/235 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN-RAYY 69 + L+ R+ + + +P +P R+ FA +++ + TID + +Y Sbjct: 10 AFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVIC----FSTIDKPPSLEIDEHY 65 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLI 128 L E +G GL+ + +Q GS I +G ++ + + A++PL I Sbjct: 66 MLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVID-PQTGAQSPLIGQFI 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNI-FSSFV-NMLQTTFMIMLRL 185 + LL + ++ HH + + S+ I + Q NFG+ F+ F+ L F+I ++ Sbjct: 125 YTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEQFAYFIAKSLNAMFIIAFQM 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 S+P + + ++++G++ + VPQ+ ++ + P I + L +C+S+ +V + Sbjct: 185 SAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVR 239 >gi|87307410|ref|ZP_01089555.1| probable flagellar biosynthetic protein fliR [Blastopirellula marina DSM 3645] gi|87290150|gb|EAQ82039.1| probable flagellar biosynthetic protein fliR [Blastopirellula marina DSM 3645] Length = 267 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/199 (20%), Positives = 94/199 (47%), Gaps = 7/199 (3%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 ++ RV + P +Y P +V+ A+ S+++ W + F ++ ++ Sbjct: 20 VLTRVSGMLATAPMFGSNYAPAKVKAFLAVTISMMITGLFWG----EKFPQPDHWMSYLV 75 Query: 75 V---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V ELF+G GL +R+ G+Q TG ++ GL++ + + + L L ++ Sbjct: 76 VLGGELFIGISFGLGVRILFAGVQITGQMLGQIGGLSVADAFNPAFDESVPMLAVLFDMV 135 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + + + H + AL+ ++ +P G L + V+ L +FM+ ++ ++P Sbjct: 136 VVAMFFCLGGHRFMIGALLSTFADVPPGVGLASPEVVHVLVSTLSISFMLGVQAAAPGTV 195 Query: 192 FYIVFNISIGLLNKLVPQI 210 ++ + +GL+++ +PQ+ Sbjct: 196 ALLIGVLVMGLISRTLPQL 214 >gi|170722842|ref|YP_001750530.1| flagellar biosynthesis protein FliR [Pseudomonas putida W619] gi|169760845|gb|ACA74161.1| flagellar biosynthetic protein FliR [Pseudomonas putida W619] Length = 258 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 109/228 (47%), Gaps = 15/228 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 RV + +M +P +P ++RL A+A ++V++P L +D + L+ + L Sbjct: 22 RVTAVLMTMPIFGTRMLPARIRLYAAVAITVVIVPALPPLPEFDPLSLRGLL-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G + G +++ G +I+ +G+ + + ++ + ++ + ++ Sbjct: 75 CGEQIIVGALFGFSLQLLFQAFVIAGQIIAIQMGMAFASMVDPANGVNVAVVSQFMTMLV 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + V++ H VF L +S+ T+P+G L N F L F L L P + Sbjct: 135 SVLFLVMNGHLVVFEVLTESFTTLPVGNALVV-NHFWEMAGRLSWVFGAGLLLILPAIAA 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSIEIIVYQ 238 +V NI+ G++ + PQ+ I+ I P ++G+G ++ L+ + YQ Sbjct: 194 LLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADVLSHYQ 241 >gi|294339802|emb|CAZ88165.1| Flagellar biosynthetic protein FliR [Thiomonas sp. 3As] Length = 264 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 10/228 (4%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 RV + + L P SM +P VR+ A+ ++ + P L +Q A+ L + Sbjct: 21 VRVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPAMPPVQFGTATAWMLLLQQLL 80 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + G GL + + + F GSVI +G+ T + T L S + ++ +L Sbjct: 81 V--GGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQGVQVTSLASFLNMVTMLLF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ----TTFMIMLRLSSPFLFF 192 ++ H + + +S+ +P+ N G ++ + Q F + L L++P + Sbjct: 139 LAVNGHLILLAVIARSFTLLPVAP--NLGLAAQTWFTLAQQGGSAIFSLGLALAAPVIGV 196 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSIEIIVYQ 238 ++ N+ +G+L KL PQ+ ++ + P +++G +L+L + + V Q Sbjct: 197 LLIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQNVVQ 244 >gi|152987229|ref|YP_001349233.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PA7] gi|150962387|gb|ABR84412.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa PA7] Length = 258 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 9/225 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 RV + +M +P + +P++VRL A+ +VL+P L +D + + + ++V Sbjct: 22 RVAALLMTMPVIGTQLVPVRVRLYLALGICVVLVPNLPPMPQVDALSVKSMLLIGEQILV 81 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 LG LL + + G +IS +GL + + ++ ++ L ++ L Sbjct: 82 GALLGFSLQLLFHAFVI----AGQIISMQMGLGFASMVDPANGVSVPVLGQFFTMLVTLL 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H VF + +S+ T+P+G+ L+ GN F L L L+ P + +V Sbjct: 138 FLAMNGHLVVFEVIAESFVTLPVGEGLS-GNHFWVIAGKLGWVMGAALLLALPAITALLV 196 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSIEIIVYQ 238 N++ G + + PQ+ I+ I P ++GLG L++ + + YQ Sbjct: 197 VNLAFGAMTRAAPQLNIFSIGFPLTLVLGLGILWIGTADLLGQYQ 241 >gi|149908780|ref|ZP_01897440.1| putative flagellar biosynthetic protein FliR [Moritella sp. PE36] gi|149808054|gb|EDM67995.1| putative flagellar biosynthetic protein FliR [Moritella sp. PE36] Length = 260 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 9/225 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R+ S + LLP + I VR+ FA+ +I++ P + + + +N +++ Sbjct: 22 RIISALWLLPIFGDTRITPSVRILFALTLAILISP----VVPVVDNINPFSLGSIILALE 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS-LIGIIGLL 134 ++ G GL + + ++ G ++S +GL++ M S + +NS L+ I L Sbjct: 78 QILFGLFFGLSLTMLFTMMKLIGEILSMQMGLSMAV-MNDPSSGGSSHVNSHLLTIFATL 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + H V LV+S+ T PIG + NI + ++ FM L L+ P + + Sbjct: 137 LFLSFNGHLIVLDILVESFVTWPIGSSIYLLNI-DIILKLVSWMFMAALMLAMPAIVAML 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + NI+ G++N+ P + +Y + P + LG + L L +I +F Sbjct: 196 LVNITFGVMNRSAPSLNVYSLGFPMGMLLGIICLGLVFRVIPNRF 240 >gi|308063034|gb|ADO04921.1| flagellar biosynthesis protein FliR [Helicobacter pylori Sat464] Length = 255 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 11/236 (4%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P L ++ +I G++ K PQ + I P I +G + + L I I+ +F Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRFKEE 243 >gi|121592128|gb|ABD36818.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens] Length = 261 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/235 (22%), Positives = 108/235 (45%), Gaps = 13/235 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVN 65 S L + RV S +M++P + +P +VRL FA+A ++V+ P L +DL + Sbjct: 18 SFMLPLFRVASMLMVMPVFGTTLVPRRVRLYFALAITVVITPNLPPMPAVSPLDLSGLL- 76 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L+ ++ +G V G ++++ G +++ +G+ + + ++ ++ + Sbjct: 77 ------LIGEQILVGAVLGFSLQLFFQAFAVAGQIVAIQMGMGFASMVDPANGVSVAVIG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 ++ L ++ H VF L +S+ T+P+G L + L L L Sbjct: 131 QFFTMLVTLLFLSMNGHLVVFEVLTESFTTLPVGGGLMTAQ-YWELAGKLGWVLGAALLL 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + + + I+ Q+ Sbjct: 190 VLPAVTALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGLFIVWVGLADILNQYQ 244 >gi|304438442|ref|ZP_07398382.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368525|gb|EFM22210.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 260 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/206 (21%), Positives = 95/206 (46%), Gaps = 2/206 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ RV ++ P I + R+ A+A +I+L P + N + Sbjct: 16 LMLVRVSGIFLISPFFGSMNISIYFRVGTALAITILLFPVVDGLGTPYVPENVIMFGVTA 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + ELF+G + G + + + G V+ +G + + + + S + + + Sbjct: 76 LGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQIPLIGSFLYNLAV 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + L + HH + ALV+S+ +PI G E N ++ N T F+ ++++ P F Sbjct: 136 IVLLATNGHHMILAALVESFRVVPIAGMEGNL-SLAMLIANFTGTIFLTGMKIAMPITFA 194 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP 218 ++ N+ +G+L++ +PQ+ I+ + P Sbjct: 195 ILLTNVGLGILSRTMPQMNIFVVGIP 220 >gi|238916766|ref|YP_002930283.1| flagellar biosynthetic protein FliR [Eubacterium eligens ATCC 27750] gi|238872126|gb|ACR71836.1| flagellar biosynthetic protein FliR [Eubacterium eligens ATCC 27750] Length = 257 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 105/220 (47%), Gaps = 20/220 (9%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVNRAYYSKL 72 LI+ R+ S + P +M+ +P +V++ F+ +I++ D +++ + Y+ + Sbjct: 15 LILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMSVEYNGMIE---YAII 71 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E+ +G + G + + F G +I IG+++ L + +GI+G Sbjct: 72 VVEEIIVGILLGAVSSFCVQIIMFAGKIIDMDIGISMA-------QLYDPTTRMQVGIMG 124 Query: 133 -------LLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLR 184 +L L + H + A+V++Y IPIG + FG I++ + + F+I R Sbjct: 125 NFYYYMMMLLLIISGMHQYLVSAIVETYRVIPIGG-VKFGAGIYTGIIGFVSDFFVIGFR 183 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ P ++ N + +L K+ PQ+ ++ + I +G Sbjct: 184 IALPVFAAILMLNCVLAILAKVSPQMNMFVVGMQLKIFVG 223 >gi|157959921|ref|YP_001499955.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC 700345] gi|157844921|gb|ABV85420.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC 700345] Length = 259 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 27/242 (11%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSK 71 CR+ M++P LS +YIP+ VR+ A+ S ++ P L D I +Q + Sbjct: 21 CRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPPLPEVDAISIQALL------- 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L + +L +G + L + + + G ++S +GL + S + L + Sbjct: 74 LAIEQLLVGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSGGSHPILGQWFLLY 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G L V+D H LV S+ P+G + F + + F + L+ P + Sbjct: 134 GTLVFLVLDGHLVAIGVLVDSFRLWPVGMGV-FDLPLMGLIGRISWLFAVSFMLAIPSIL 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLF------------LCLSIEIIVY 237 ++ NI+ G+L++ P + ++ + P L+GL +F LCL +Y Sbjct: 193 AMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRYSDLCLDALSAMY 252 Query: 238 QF 239 QF Sbjct: 253 QF 254 >gi|323178516|gb|EFZ64094.1| flagellar biosynthetic protein FliR [Escherichia coli 1180] Length = 251 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D I L + + L Sbjct: 13 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLISLNSLI-------L 65 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 66 TMEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 125 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 126 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 181 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 182 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 210 >gi|304412526|ref|ZP_07394132.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183] gi|307307185|ref|ZP_07586923.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175] gi|304349168|gb|EFM13580.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183] gi|306910424|gb|EFN40855.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175] Length = 259 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 5/223 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SL+ CR+ M++P L SY+P VR+ A++ + ++ P L + + + Sbjct: 15 SLWWPFCRIMGAFMIIPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVDALSLGSLF- 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + +L +G + L + + + G+++S +GL + ++ L+ + I Sbjct: 74 -LAVEQLLIGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTNPILSEWLQI 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 G L +D H +V S+ PIG + F ++ + F L L+ P + Sbjct: 133 FGTLIFLALDGHLVGLNIIVDSFRLWPIGNGI-FDLPLMGLISRMGWLFAASLMLAIPAV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLS 231 ++ NI+ G+L++ P + I+ + P L+GL +FL LS Sbjct: 192 LAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLS 234 >gi|312879605|ref|ZP_07739405.1| flagellar biosynthetic protein FliR [Aminomonas paucivorans DSM 12260] gi|310782896|gb|EFQ23294.1| flagellar biosynthetic protein FliR [Aminomonas paucivorans DSM 12260] Length = 259 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 9/212 (4%) Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94 P+ VR AM ++V+ P + + F + + E +G GL + L Sbjct: 36 PLPVRFWTAMLLAVVVTPGVGLSYPGPLFAHWGFLFVAAGREFLIGVTLGLFAGLPLYAL 95 Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG-LLALWVI---DFHHQVFYALV 150 Q +G T +GL + T D ++ET + +LIG + LL +W + H + AL Sbjct: 96 QMSGFFEGTQMGLGIAT---FFDPMSETQV-ALIGQMKYLLGVWFFFHWNGHLLLIEALT 151 Query: 151 KSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQI 210 +S IP+ + G + LQ F++ L+++ P ++ ++ +G + + VPQ+ Sbjct: 152 ESLRLIPLAKGTWGGGAAIPWGIWLQKLFVLSLQMALPLFGALLLADVGMGFVARTVPQM 211 Query: 211 PIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ + P IGLG LF+ L++ + HS Sbjct: 212 NLFVLGIPLKIGLG-LFILLAVLPLTVDLFHS 242 >gi|146282914|ref|YP_001173067.1| flagellar biosynthesis protein FliR [Pseudomonas stutzeri A1501] gi|145571119|gb|ABP80225.1| flagellar biosynthetic protein FliR [Pseudomonas stutzeri A1501] gi|327481254|gb|AEA84564.1| flagellar biosynthesis protein FliR [Pseudomonas stutzeri DSM 4166] Length = 258 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/225 (21%), Positives = 108/225 (48%), Gaps = 7/225 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+ + +M +P + +P++VRL A+A ++VL+P L ++ + + ++ +++ Sbjct: 22 RIAALLMSMPLIGTQLVPVRVRLYLALAIALVLVPTLPPMPVVESLSLASLLLIAEQLLI 81 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 + G V L V+ + +G +++ +GL + + ++ ++ L ++ +L Sbjct: 82 GVMFGFVLQLFFHVFIV----SGQLLAMQMGLGFASMVDPANGISVPVLGQFFNMLVILL 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H V L +S+ T+P+G L+ N F L L L P + +V Sbjct: 138 FLSVNGHLVVLEILAESFVTLPVGGGLS-TNHFWEVAGKLGWVLGAGLLLVLPAITALLV 196 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 N++ GL+ + PQ+ I+ I P + LG + + + + I Q+ Sbjct: 197 VNLAFGLMTRAAPQLNIFSIGFPLTLVLGLIIVWIGMADIFAQYQ 241 >gi|77463636|ref|YP_353140.1| flagellar protein FliR [Rhodobacter sphaeroides 2.4.1] gi|126462468|ref|YP_001043582.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC 17029] gi|332558492|ref|ZP_08412814.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides WS8N] gi|3435111|gb|AAC32324.1| flagellar protein FliR [Rhodobacter sphaeroides] gi|77388054|gb|ABA79239.1| Flagellar protein FliR [Rhodobacter sphaeroides 2.4.1] gi|126104132|gb|ABN76810.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC 17029] gi|332276204|gb|EGJ21519.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides WS8N] Length = 269 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 8/204 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK- 71 F+ R+G+ ++ P ++P+ VR+ +A I+ LP L ++L A + Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRI---VATVILTLPVLGR-VELPPPEELASLAAI 78 Query: 72 -LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+M E+ +G GL++ + G I++ GL + S +TP+ + I Sbjct: 79 PLMMQEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAG-GQTPVVAQIFG 137 Query: 131 IGLLALW-VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + L ++ +D H L++SY ++P G G + + F++ L++ P Sbjct: 138 LALTTVFLALDGHLTALDILLRSYESLPPGAPFAPGRFLEAGIGAGGRMFLLGLQIMMPV 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIY 213 + I+ N++IG++ + PQ+ ++ Sbjct: 198 VAALILINVTIGIVTRSAPQLNVF 221 >gi|308068670|ref|YP_003870275.1| flagellar biosynthetic protein fliR [Paenibacillus polymyxa E681] gi|305857949|gb|ADM69737.1| Flagellar biosynthetic protein fliR [Paenibacillus polymyxa E681] Length = 261 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 13/237 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI CR+ S ++ P S +P ++ + F +++ + T Q Y LV Sbjct: 13 LIFCRITSFFVVAPIFSTRGVPNIFKVGIS-GFLALVVYLTYGT--HQQVPTDVAYVLLV 69 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL--AETPLNSLIGI- 130 E+ +G + G ++ +Q GS I +G + + + D + A TPL Sbjct: 70 GREVLIGLLLGFTAYLFMTAIQTAGSFIDLQVGFGMAS---VFDPMTGASTPLTGNFKFA 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQE----LNFGNIFSSFVNMLQTTFMIMLRLS 186 I +L I+ HH + A++ SY +P+ + L G++ V +FM+ +++ Sbjct: 127 IAVLFFLSINGHHHLLNAILYSYDWVPLTNDFFVKLYGGSVTEFLVRSFAESFMLAFQIA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +P + + ++ +G L K PQ I+ I P I +G L L + + F F Sbjct: 187 APIVVATFLTDVGLGFLAKTAPQFNIFVIGVPLKIIVGLFMLLLLMPSFAFIFERLF 243 >gi|260866392|ref|YP_003232794.1| putative lateral flagellar export pore protein [Escherichia coli O111:H- str. 11128] gi|257762748|dbj|BAI34243.1| predicted lateral flagellar export pore protein [Escherichia coli O111:H- str. 11128] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D I L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLISLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TMEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|126176174|ref|YP_001052323.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155] gi|125999379|gb|ABN63454.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155] Length = 259 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 5/223 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SL+ CR+ M++P L SY+P VR+ A++ + ++ P L + + + Sbjct: 15 SLWWPFCRIMGAFMIMPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVDALSLGSLF- 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + +L +G + L + + + G+++S +GL + ++ L+ + I Sbjct: 74 -LAVEQLLIGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTNPILSEWLQI 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 G L +D H +V S+ PIG + F ++ + F L L+ P + Sbjct: 133 FGTLIFLALDGHLVGLNIIVDSFRLWPIGNGI-FDLPLMGLISRMGWLFAASLMLAIPAV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLS 231 ++ NI+ G+L++ P + I+ + P L+GL +FL LS Sbjct: 192 LAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLS 234 >gi|302878287|ref|YP_003846851.1| flagellar biosynthetic protein FliR [Gallionella capsiferriformans ES-2] gi|302581076|gb|ADL55087.1| flagellar biosynthetic protein FliR [Gallionella capsiferriformans ES-2] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 107/229 (46%), Gaps = 5/229 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 +I + +L + R+ + I P L +P +V++ ++ +IV+ P L D+ Sbjct: 10 DIWLSTLLYPMVRLLAMISSAPILGNKQVPARVKIGLSVLMAIVIAPTLAPMPDIPL--- 66 Query: 66 RAYYSKLVMVE-LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + S L+MV+ + +G G +R+ ++ G +GL + + + T Sbjct: 67 GSPQSLLIMVQQIIIGVSMGFTMRIVFTAVEMAGEFSGLQMGLGFASFYNPQSASSSTVT 126 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +GII LA ++ H + + +S+ T+P+GQ + + +++ T F L+ Sbjct: 127 AQFMGIIATLAFLSMNGHLMLLALVTESFHTLPVGQMMATKSFYTA-AQWGATIFAYGLQ 185 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 LS P L ++ N+++G++ + Q+ + I P + +G L LS+ Sbjct: 186 LSMPLLAALLITNLALGIMTRAAQQLNPFAIGFPITLTVGFFVLSLSLP 234 >gi|238927447|ref|ZP_04659207.1| flagellar biosynthesis protein FliR [Selenomonas flueggei ATCC 43531] gi|238884729|gb|EEQ48367.1| flagellar biosynthesis protein FliR [Selenomonas flueggei ATCC 43531] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 97/208 (46%), Gaps = 6/208 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R ++ P IP+ R+ A++ ++VL P + N ++ Sbjct: 16 LMLVRTSGIFLISPFFGSMNIPIFFRVGTALSMTVVLFPVVDGLGTPYVPENLIMFALTA 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + ELF+G + G + + + G V+ +G + + + + S + + Sbjct: 76 VGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQIPLIGSFLYNLAA 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFV--NMLQTTFMIMLRLSSPFL 190 + L + HH + ALV+S+ +PI G E GN+ + + N T F+ ++++ P Sbjct: 136 IILLATNGHHMILAALVESFRAVPIAGME---GNVSLALLIANFTGTIFLTGMKIAMPIT 192 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ N+ +G+L++ +PQ+ I+ + P Sbjct: 193 FAILLTNVGLGILSRTMPQMNIFVVGIP 220 >gi|308183969|ref|YP_003928102.1| flagellar biosynthesis protein FliR [Helicobacter pylori SJM180] gi|308059889|gb|ADO01785.1| flagellar biosynthesis protein FliR [Helicobacter pylori SJM180] Length = 255 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 11/236 (4%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P L ++ +I G++ K PQ + I P I +G + + L I I+ +F Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGVILIISAIMGRFKEE 243 >gi|254488003|ref|ZP_05101208.1| flagellar biosynthetic protein FliR [Roseobacter sp. GAI101] gi|214044872|gb|EEB85510.1| flagellar biosynthetic protein FliR [Roseobacter sp. GAI101] Length = 162 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 8/143 (5%) Query: 92 LGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI-DFHHQVFYALV 150 + LQ TGS+ + + L+ Q G + + P I + LAL V H + L+ Sbjct: 1 MALQTTGSIAAQSTSLS-QILGGAA--VEPIPAMGYILVFAALALAVTAGLHVKAASLLI 57 Query: 151 KSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--LSSPFLFFYIVFNISIGLLNKLVP 208 SY T+P+GQ N ++ S + QT+ + L L++PF+ +++N+++G +NK +P Sbjct: 58 YSYDTLPMGQFPNPSDL--SEWGLAQTSHAMSLAFTLAAPFVILSLLYNLALGAINKAMP 115 Query: 209 QIPIYFISTPYLIGLGSLFLCLS 231 Q+ + F+ P + G LC++ Sbjct: 116 QLMVAFVGAPVITAGGLFILCIA 138 >gi|296135633|ref|YP_003642875.1| flagellar biosynthetic protein FliR [Thiomonas intermedia K12] gi|295795755|gb|ADG30545.1| flagellar biosynthetic protein FliR [Thiomonas intermedia K12] Length = 266 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 105/227 (46%), Gaps = 10/227 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + + L P SM +P VR+ A+ ++ + P L +Q A+ L + + Sbjct: 22 RVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPAMPPVQFGTATAWMLLLQQLLV 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G GL + + + F GSVI +G+ T + T L S + ++ +L Sbjct: 82 --GGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQGVQVTSLASFLNMVTMLLFL 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ----TTFMIMLRLSSPFLFFY 193 ++ H + + +S+ +P+ N G ++ + Q F + L L++P + Sbjct: 140 AVNGHLILLAVIARSFTLLPVAP--NLGLAAQTWFTLAQQGGSAIFSLGLALAAPVIGVL 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSIEIIVYQ 238 ++ N+ +G+L KL PQ+ ++ + P +++G +L+L + + V Q Sbjct: 198 LIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQNVVQ 244 >gi|157165085|ref|YP_001467383.1| flagellar biosynthesis protein FliR [Campylobacter concisus 13826] gi|112801903|gb|EAT99247.1| flagellar biosynthetic protein FliR [Campylobacter concisus 13826] Length = 253 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 5/211 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ I+ P S + IP+ V+ +VL P + +N +N + + Sbjct: 17 LLFARLSGLIVFFPFYSHNQIPLSVKTLLVFVLCVVLFPL---SKAHENSIN--FLVGEI 71 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ LG GL++ + LQ G IS +G ++ + + + +LI I L Sbjct: 72 LGEVMLGLSAGLMLTIIFATLQMAGEQISMVMGFSMASVLDPQTGTNSPVIANLINFIAL 131 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L D HH + S +P+G I S +N+ FM +S P + Sbjct: 132 LTFLAFDGHHLLLQFYASSLAVVPLGDFYPRPGIMSYAINLFTNLFMFGFIMSFPIIALS 191 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ + G+L K +PQ + I P + +G Sbjct: 192 LLSDSIFGMLMKTMPQFNLLVIGYPIKVTIG 222 >gi|126697834|ref|YP_001086731.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile 630] gi|115249271|emb|CAJ67084.1| Bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile] Length = 604 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 85/167 (50%), Gaps = 3/167 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLL 134 E G + G + + ++ GS++ +GL++ +M +S+ +T L ++L+ L+ Sbjct: 64 ETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSM-INMFDPNSMTQTTLIDNLMNWTALM 122 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + +D HH + + S+ IPIG+ NI +N+ F+ +++ P + + Sbjct: 123 IFFSMDGHHVLIRGIRYSFELIPIGKPFVDNNI-DYIINIFVQCFLTGFKIAIPIVLCLL 181 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + +GL+++ VPQ+ + + P I +G +SI +IV Q SH Sbjct: 182 MADFILGLISRSVPQLNVMIVGMPLKILVGIALFIISIPLIVNQISH 228 >gi|167585024|ref|ZP_02377412.1| flagellar biosynthetic protein FliR [Burkholderia ubonensis Bu] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 2/230 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + + P + +P +V++ A ++V+ P L + F + + +V+ + Sbjct: 21 VRMLALVAVAPVTGHASVPGRVKIGVAAFMALVVAPTLGAMPAVTVFSAQGIW--IVVTQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G G +++ Q G I ++GL T S A + + + +LA Sbjct: 79 FLIGVAMGFTMQIVFAAAQAAGDAIGLSMGLGFATFFDPHASGATPVMGRFLNAVAILAF 138 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 D H QV AL S+ +P+ EL + + T F + L L+ P + ++ Sbjct: 139 LAFDGHLQVLAALAASFQALPVSAELLHAPGWRTLAAFGATVFQMGLLLALPVVAALLIA 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 N+++G+LN+ PQ+ I+ + P + +G L + L + +V F F G Sbjct: 199 NLALGILNRAAPQVGIFQVGFPVTMLVGLLLVQLMVPNMVPFFGRLFDMG 248 >gi|294500922|ref|YP_003564622.1| flagellar biosynthetic protein FliR [Bacillus megaterium QM B1551] gi|294350859|gb|ADE71188.1| flagellar biosynthetic protein FliR [Bacillus megaterium QM B1551] Length = 258 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 17/216 (7%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ RV S + +P S IP ++ + + S+++ TIDL A + Sbjct: 10 AFLLVLVRVTSFFITVPLFSYKTIPAVHKVGLSASLSVII----ATTIDLPVVSLDAQFV 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIG 129 LV+ E +G GL V+ + +Q G +I IG + + + A++P L + Sbjct: 66 LLVVKECAVGLFIGLTAYVFIMAIQIAGGLIDFQIGFAIANVID-PQTGAQSPILGQYLY 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTI-------PIGQELNFGNIFSSFVNMLQTTFMIM 182 + LL L + HH + + SY I P+G + +I + F +M F++ Sbjct: 125 VFALLFLLSTNGHHLLIDGIYNSYLIIPLDKTAFPVGSQAFATHIITVFSSM----FLVA 180 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +++S P + + +I++G++ + VPQ+ I+ + P Sbjct: 181 VQMSLPLVGSLFLVDIALGIVARTVPQLNIFVVGFP 216 >gi|308061462|gb|ADO03350.1| flagellar biosynthesis protein FliR [Helicobacter pylori Cuz20] Length = 255 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 VLLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFESALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|239997096|ref|ZP_04717620.1| flagellar biosynthesis protein FliR [Alteromonas macleodii ATCC 27126] Length = 259 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 2/226 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + + GLS IP QVR + +++++P + ++N V+ + +V+ +L Sbjct: 21 RISGLFVAMIGLSAKSIPPQVRALLGIMLTLIIMPVV-PPSPIENLVDVGTF-LIVVQQL 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G + + G VI+ GL + + + + + I+ L W Sbjct: 79 LIGIAIGFISMMVLNTFVLAGQVIAMQTGLGFASIVDPVNGINVPAVGQFYLILATLLFW 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 +D H + +V S+ PIG+ G F + F+ + LS + ++ N Sbjct: 139 TLDGHLSMIQMIVMSFEAFPIGEAWWTGEQFRDIAHWAGWMFISAVTLSLAPIVSLLIVN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ G++ K PQ+ I+ I +G L + ++++ F + Sbjct: 199 LAFGVMTKAAPQLNIFSIGFSIAQVMGLLIIWITLDNFTAHFETQW 244 >gi|212637761|ref|YP_002314286.1| flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3] gi|212559245|gb|ACJ31699.1| Flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3] Length = 259 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/241 (23%), Positives = 109/241 (45%), Gaps = 25/241 (10%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+ M++P L SY+P+ VR+ A++ S+++ P L ++ +A + L + + Sbjct: 21 CRIMGAFMVMPFLGSSYVPVMVRILLAISISVLIAPILPPFPEVDAISLQALF--LGIEQ 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG----IIG 132 L +G + L + + + G+++S +GL +M I + A N ++G + G Sbjct: 79 LLVGFMLALFLTIMIHVMSLVGAMMSMQMGL----AMAIMNDPANGGSNPILGQWFLLYG 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L +D H LV S+ PIG + F + + F L+ P + Sbjct: 135 TLLFLALDGHLVALGILVDSFRLWPIGMGV-FDLPLMGLIGRISWIFAASFMLALPAVLA 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLF------------LCLSIEIIVYQ 238 ++ N++ G+L++ P + ++ + P L+GL +F LCL +YQ Sbjct: 194 MLMVNVTFGVLSRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRYSDLCLDALSAMYQ 253 Query: 239 F 239 F Sbjct: 254 F 254 >gi|88800469|ref|ZP_01116033.1| flagellar biosynthesis protein [Reinekea sp. MED297] gi|88776799|gb|EAR08010.1| flagellar biosynthesis protein [Reinekea sp. MED297] Length = 263 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 18/209 (8%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-----TIDLQNFVNRAYYSKL 72 R+G+ +++P L IP++VRL A + + P L D +D+Q F+ + Sbjct: 27 RLGAFFVIVPVLGARLIPVRVRLGLAFVITYTIYPLLPDMPIIEAVDVQTFM-------I 79 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ ++ +G G L+ V G IS +GL + + ++ ++ L+ ++ Sbjct: 80 ILEQILIGTTLGFLVFVILQIFILAGQTISMQMGLGFASMVDPANGVSVAVLSQWYQVLV 139 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQEL---NFGNIFSSFVNMLQTTFMIMLRLSSPF 189 L I+ H +V S+ T+P+GQ L + S F L F L L+ P Sbjct: 140 TLVYLAINGHLLTLEVVVDSFYTLPVGQGLFTVESWRLLSEFGAWL---FRASLMLALPA 196 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 + ++ N++ G++ + PQ+ ++ + P Sbjct: 197 VTALLLVNLTFGVMTRAAPQLNVFALGFP 225 >gi|56964017|ref|YP_175748.1| flagellar biosynthesis protein FliR [Bacillus clausii KSM-K16] gi|56910260|dbj|BAD64787.1| flagellar biosynthetic protein FliR [Bacillus clausii KSM-K16] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 97/212 (45%), Gaps = 9/212 (4%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI RV S ++LP + +P ++L S L L ++D+ + Sbjct: 10 AFLLIFIRVSSFFVVLPLFNHRTVPAPLKL----GLSAFLAATLAVSLDVPELALDLPFL 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN-SLIG 129 L + E +G GL+ + +Q G VI +G L + + A++PL S + Sbjct: 66 LLALKEFAIGIAAGLMASMILYAVQVAGGVIDFHLGFMLANVVD-PQTGAQSPLTGSYLY 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLS 186 + +L L +ID HH + ++ SY +P+ Q G++ ++ F + + ++ Sbjct: 125 LFAMLYLLIIDGHHLLLDGVIYSYQFVPLDQLVLPFGSGHVMEHVTQVMVMLFAMAVSMA 184 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + ++++G++++ VPQ+ ++ + P Sbjct: 185 MPVAGALFLVDVALGIISRTVPQMNVFVVGIP 216 >gi|15615003|ref|NP_243306.1| flagellar biosynthesis protein FliR [Bacillus halodurans C-125] gi|10175060|dbj|BAB06159.1| flagellar protein required for flagellar formation [Bacillus halodurans C-125] Length = 258 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 9/215 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ + +M +P S IP ++ A+ + +L L I L + Y L+ Sbjct: 13 LVFVRMLAFLMTMPLFSYRNIPAMFKVGIALFLAWILTFSLEPEIILFD----GTYVILI 68 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIG 132 M E+ +G + GL+ V +Q G+ I IG L ++ + A++PL S + Sbjct: 69 MKEVLVGLMVGLIAMVLLYAIQAAGAFIDVKIGF-LIANIVDPQTGAQSPLIGSYLYTFA 127 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 LL + + HH + + SY IP+ Q ++ N+ L T F+I +++ P Sbjct: 128 LLFMLATNGHHLLIDGMYYSYQFIPLNQPFLNVSDENMIELIATTLNTMFIIAFQMAFPL 187 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + + ++++G++++ VPQ+ ++ + P I +G Sbjct: 188 VGSLFLVDVALGMVSRAVPQMNVFVVGMPLKILVG 222 >gi|326389465|ref|ZP_08211032.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus JW 200] gi|325994470|gb|EGD52895.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus JW 200] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 102/215 (47%), Gaps = 9/215 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT---IDLQNFVNRAYYS 70 L+ R+ +L P +P ++ ++++ +DT +DLQ N Y Sbjct: 16 LLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIV----FDTMGPVDLQ-INNVLDYF 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +V+ E +G V GL + + G +I +G L + I + + I I Sbjct: 71 IVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFIYI 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + +L +++ H+ +F L KS IP+G+ + N ++ M+ F++ R+S+P Sbjct: 131 LTILIFMLMNGHYTLFTMLAKSVDIIPVGKVVFNLPDMSQVLTKMVSDMFILGFRISAPI 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + ++ ++++G++++ +PQ+ ++ I P I +G Sbjct: 191 ILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVG 225 >gi|291277528|ref|YP_003517300.1| flagellar biosynthetic protein [Helicobacter mustelae 12198] gi|290964722|emb|CBG40577.1| flagellar biosynthetic protein [Helicobacter mustelae 12198] Length = 254 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 9/210 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT---IDLQNFVNRAYYSKLVM 74 R G P IP+ +R A +V P L T +D +F+ Sbjct: 21 RFGGIFAFFPFFDSGLIPVSLRGALAFFMCLVFFPILPHTPLQLDTVSFLIAGS------ 74 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 +EL G + L++++ L F G IS ++GL + ++ + + + ++ ++ +L Sbjct: 75 LELLFGFLASLVLQIIFSTLAFAGDSISFSMGLTMASAYDPATGSQKPIVGQVLMMLAML 134 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 DFHH +F + +S IP+G + NI + + F + ++ P L + Sbjct: 135 IALQSDFHHVIFSFVAQSLEQIPLGHFVTKQNILETIIYDFSLLFSVGFAMAFPILGLIL 194 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + +I G++ K PQ + I P I L Sbjct: 195 LSDIVFGMIMKTHPQFNLLAIGFPVKIALA 224 >gi|317179977|dbj|BAJ57763.1| flagellar biosynthesis protein FliR [Helicobacter pylori F32] Length = 255 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|297379398|gb|ADI34285.1| flagellar biosynthetic protein FliR [Helicobacter pylori v225d] Length = 255 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY + Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTT 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|297584053|ref|YP_003699833.1| flagellar biosynthetic protein FliR [Bacillus selenitireducens MLS10] gi|297142510|gb|ADH99267.1| flagellar biosynthetic protein FliR [Bacillus selenitireducens MLS10] Length = 259 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 11/229 (4%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFS-IVLLPFLWDTIDLQ-NFVNRAY 68 + L++ RV + ++ LP S IP + ++ FA S I++ W I+L FV A Sbjct: 11 AFLLVLVRVSAFMVTLPFFSYQTIPNRFKIGFAAFLSWIMIFSGDWPIIELNYEFVLLAI 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV G GL+ + +Q G +I +G + + + S + Sbjct: 71 KEALV------GLTVGLIALLLLYAIQVAGGLIDLKLGFLIANVVDPQTGTQAPLIGSYL 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFG-NIFSSFVNM-LQTTFMIMLRL 185 LL L + HH + + SY IP+ Q L G + F+ + + T F+I ++ Sbjct: 125 YTFALLFLLATNAHHLLLDGVYYSYEFIPLDQTFLPLGSEDYVEFIGVTMNTMFIIAFQM 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 S P + + ++++G + + VPQ+ ++ I P I LG +F+ +++ + Sbjct: 185 SMPIMGSIFLVDVALGFIARTVPQVNVFVIGFPVKIFLGFVFMIVTMPV 233 >gi|308182347|ref|YP_003926474.1| flagellar biosynthesis protein FliR [Helicobacter pylori PeCan4] gi|308064532|gb|ADO06424.1| flagellar biosynthesis protein FliR [Helicobacter pylori PeCan4] Length = 255 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPKLAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|317181482|dbj|BAJ59266.1| flagellar biosynthesis protein FliR [Helicobacter pylori F57] Length = 255 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 KLVMV----ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIVACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|237751819|ref|ZP_04582299.1| flagellar biosynthetic protein FliR [Helicobacter bilis ATCC 43879] gi|229373185|gb|EEO23576.1| flagellar biosynthetic protein FliR [Helicobacter bilis ATCC 43879] Length = 258 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/237 (18%), Positives = 104/237 (43%), Gaps = 3/237 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 M+ +++ R G + P +P+ VR A ++V +P + I ++ + + Sbjct: 14 MAFLMLLLRFGGILAFFPFFDNQILPVSVRAALAFVLAVVFMPMVTHII---SYPSLTAF 70 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + E+ LG GL++++ + F G + S ++GL + ++ + ++ ++ Sbjct: 71 MIGGLFEILLGFTCGLVLQIIFSSIVFAGDLASFSMGLTMASAYDPMSGTTKPIVSQVVV 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + +L +FH+ + + ++ P+G + NI + F +I ++ P Sbjct: 131 FLSILMALHFNFHYLLLDIIARTLNDTPLGGFMLSDNIVAYFTKSFANMILIGFSMAFPI 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ +I G++ K PQ + I P IG+ + L + + I+ F + G Sbjct: 191 IAVLLLTDIIFGMIMKTHPQFNLLVIGFPVKIGVALVILAIIVPSIMQHFRYDLSEG 247 >gi|225871938|ref|YP_002753392.1| flagellar biosynthetic protein FliR [Acidobacterium capsulatum ATCC 51196] gi|225793704|gb|ACO33794.1| flagellar biosynthetic protein FliR [Acidobacterium capsulatum ATCC 51196] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 99/214 (46%), Gaps = 4/214 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 +L L++ RV ++ P S + IP QV+ F +A ++ L P + L + R Sbjct: 14 ALVLVMLRVSGLMLFAPVFSSTAIPPQVKAVFTLAVTVCLAPVV---AGLPHADAR-LGP 69 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + ++ EL +G + G+ +R+ L F G ++ A +L + + + + + Sbjct: 70 QEILSELAVGLLFGICLRMLMEMLTFAGDLLGIAFSFSLVNLLDPNAPVQVPLMGQFFSL 129 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 +G L L + AL++++ +P+G + + M F+ L+L++P + Sbjct: 130 LGTLVLLSTGLDRTMIAALMRTFAVVPVGSFVLSAKTAWAVAEMGTGLFLAALQLAAPVM 189 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ + ++GL +L PQ+P ++ P LG Sbjct: 190 VATMLVDFAVGLAARLSPQLPALSLTVPVKTMLG 223 >gi|260438788|ref|ZP_05792604.1| flagellar biosynthetic protein FliR [Butyrivibrio crossotus DSM 2876] gi|292808777|gb|EFF67982.1| flagellar biosynthetic protein FliR [Butyrivibrio crossotus DSM 2876] Length = 258 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 99/202 (49%), Gaps = 6/202 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVNRAYYSKL 72 LI+ R+ S + P +M+ P + +L A S+++ + D T++ + + Y+ L Sbjct: 16 LILVRIASFVYTAPFFNMANTPQRTKLGLAFFISLIVFTLVPDRTLEYSSILE---YAIL 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E +G + G V + F G++I + IGL++ + + T +L Sbjct: 73 VIKESVVGLLLGFSCMVCVQTITFAGNIIDSNIGLSMASEYDPTLRDQTTVSGTLYYYTV 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L L V + + A+V +Y IPI G +N +++SS V ++ F+I R++ P Sbjct: 133 FLLLMVSGLYQFLISAIVDTYTIIPINGLSVN-PSLYSSVVTLVSDYFIIGFRIALPVFV 191 Query: 192 FYIVFNISIGLLNKLVPQIPIY 213 ++ N +G+L K+ Q+ ++ Sbjct: 192 SLLIVNCVLGILAKVASQLNMF 213 >gi|238924152|ref|YP_002937668.1| flagellar biosynthesis protein FliR [Eubacterium rectale ATCC 33656] gi|238875827|gb|ACR75534.1| flagellar biosynthesis protein FliR [Eubacterium rectale ATCC 33656] gi|291524885|emb|CBK90472.1| flagellar biosynthetic protein FliR [Eubacterium rectale DSM 17629] gi|291529026|emb|CBK94612.1| flagellar biosynthetic protein FliR [Eubacterium rectale M104/1] Length = 259 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 96/203 (47%), Gaps = 7/203 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ--NFVNRAYYSK 71 LI+ R+ S + + P + +P +V+ S + F+++ I+ ++V+ ++ Sbjct: 16 LILVRIASFVYIAPFFGDNAVPARVK----TGLSAFVALFMYNIIERPQLSYVSAVGFAV 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E G + G + + F G++I IGL++ T S + T + + Sbjct: 72 LVVKEGITGLLIGFAANICNSIVIFAGNLIDMDIGLSMATEFNPSMNSETTVTGNFYYYV 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L+ L V D H + A+ S+ +P+ G + F N+ S+ + F+I R+ P Sbjct: 132 VLVLLLVSDMHTYLIRAVCDSFSVVPLGGAQFQFDNMLSTMTKYMGDMFVIGFRIFLPVF 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIY 213 ++ N +G++ K+ PQ+ ++ Sbjct: 192 ACMMIMNCILGIMAKVAPQMNMF 214 >gi|209522298|ref|ZP_03270925.1| flagellar biosynthetic protein FliR [Burkholderia sp. H160] gi|209497274|gb|EDZ97502.1| flagellar biosynthetic protein FliR [Burkholderia sp. H160] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/210 (22%), Positives = 95/210 (45%), Gaps = 6/210 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + I P +P +V++ A +I++ P + + F + ++V Sbjct: 21 ARIAALIATAPIFGNMSLPSRVKIGLAAFATIIVAPTIGALPQVTVFSAAGVW---ILVN 77 Query: 77 LFL-GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 FL G G+ +++ + TG I +GL T + + ++ + I L Sbjct: 78 QFLIGIALGVTMQIVFQAIDATGYFIGLGMGLGFATFFDQQATGSGVVISRYMTTIATLV 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 +D H Q+ ALV ++ ++P+ L + + + N + F L L+ P + ++ Sbjct: 138 FLAVDGHLQMIAALVTTFQSVPVSANLLAPHGWQTLANWGGSIFSAGLLLALPVVVALLI 197 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGL 223 N+++G+LN+ PQI ++ I P L+GL Sbjct: 198 ANLALGILNRAAPQIGVFQIGFPLTMLVGL 227 >gi|217031933|ref|ZP_03437435.1| hypothetical protein HPB128_3g52 [Helicobacter pylori B128] gi|298736884|ref|YP_003729414.1| flagellar biosynthetic protein FliR [Helicobacter pylori B8] gi|216946402|gb|EEC25007.1| hypothetical protein HPB128_3g52 [Helicobacter pylori B128] gi|298356078|emb|CBI66950.1| flagellar biosynthetic protein FliR [Helicobacter pylori B8] Length = 255 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|221639479|ref|YP_002525741.1| Flagellar biosynthetic protein FliR [Rhodobacter sphaeroides KD131] gi|221160260|gb|ACM01240.1| Flagellar biosynthetic protein FliR [Rhodobacter sphaeroides KD131] Length = 269 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 8/204 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK- 71 F+ R+G+ ++ P ++P+ VR+ +A I+ LP L ++L A + Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRI---VATVILTLPVLGR-VELPPPEALASLAAI 78 Query: 72 -LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+M E+ +G GL++ + G I++ GL + S +TP+ + I Sbjct: 79 PLMMQEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAG-GQTPVVAQIFG 137 Query: 131 IGLLALW-VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + L ++ +D H L++SY ++P G G + + F++ L++ P Sbjct: 138 LALTTVFLALDGHLTALDILLRSYESLPPGAPFAPGRFLEAGIGAGGRMFLLGLQIMMPV 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIY 213 + I+ N++IG++ + PQ+ ++ Sbjct: 198 VAALILINVTIGIVTRSAPQLNVF 221 >gi|282891199|ref|ZP_06299702.1| putative type III secretion inner membrane protein SctT [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498892|gb|EFB41208.1| putative type III secretion inner membrane protein SctT [Parachlamydia acanthamoebae str. Hall's coccus] Length = 285 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 108/231 (46%), Gaps = 17/231 (7%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLP-FLWDTIDLQNFV 64 E ++ L + R+ I P L +P V++ A++ ++ P L T F Sbjct: 24 EGVLTIFLLFLARMFPIIAQSPFLGARVLPHPVKVSLAISLFVIFFPQMLLLTTTPIGFN 83 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE--- 121 A L+ E+ +G + G +I + +Q G +I G S+ ++D + Sbjct: 84 FNALL--LLFKEILIGFILGFIISIPFSIVQNAGMIIDHQRG---GASLMVNDPTIQNQS 138 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSF----VNML 175 +P+ +L+ ++ + WV+D A+ SY +P Q NF + S F + +L Sbjct: 139 SPVGTLLNMVLIFLFWVVDIPFLFIDAIFTSYEIVPPDQFINPNFFDAASPFRKTQIELL 198 Query: 176 QTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLG 224 ++ ++L++P L ++ ++ +G++N+L PQ+ I F+ P L+GLG Sbjct: 199 NKVMVVSIQLATPALLAILMTDVFLGIVNRLAPQVQITFLGMPLKSLLGLG 249 >gi|146277692|ref|YP_001167851.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC 17025] gi|145555933|gb|ABP70546.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC 17025] Length = 266 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 8/208 (3%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SLF R+G+ ++ P ++P+ VR+ MA ++ LP L DL A Sbjct: 16 LTSLFFATLRIGAFLLASPAFGGRFVPLPVRI---MATVVLTLPVLGRA-DLPGPEALAS 71 Query: 69 YSK--LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 S ++M E+ +G GL++ V G I+ GL + S +TP+ + Sbjct: 72 LSAVPMMMQEIAIGLSAGLVLTVLFSAAALAGDRIAATAGLGFAAQIDPSAG-GQTPVVA 130 Query: 127 LIGIIGLLALW-VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 I + L ++ +D H F L++SY ++P G G + + F++ L++ Sbjct: 131 QIFGLALTTVFLALDGHLSAFEILLRSYESLPPGAPFAPGPFLEAGIGAGGRMFLVGLQI 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIY 213 P + ++ NI+IG++ + PQ+ ++ Sbjct: 191 MMPVVAALVLINITIGVITRSAPQLNVF 218 >gi|29840695|ref|NP_829801.1| type III secretion inner membrane protein SctT [Chlamydophila caviae GPIC] gi|29835045|gb|AAP05679.1| type III secretion inner membrane protein SctT [Chlamydophila caviae GPIC] Length = 289 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/224 (20%), Positives = 103/224 (45%), Gaps = 7/224 (3%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 ++P L P +++ A+++ ++ P + + N+++ + L++ EL +G + G Sbjct: 45 IVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMNTHIANYLDDDMFYILIVKELCIGTLIG 104 Query: 85 LLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 ++ Q GS I+ G+ L+ + + +P + W+ H Sbjct: 105 FILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLSGGHR 164 Query: 144 QVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 V L++S IPI + L I+ + + M Q ++ ++LS+P ++ + Sbjct: 165 IVLTILLQSLEIIPIHKFLPMEMMSLDAPIWITLIKMCQLCLIMTIQLSAPAAVAMLMSD 224 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + +G++N++ PQ+ + ++ + +G LFL LS IV Q + Sbjct: 225 LFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLSWWFIVKQIDY 268 >gi|221309515|ref|ZP_03591362.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. 168] gi|221313839|ref|ZP_03595644.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318762|ref|ZP_03600056.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. JH642] gi|221323034|ref|ZP_03604328.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. SMY] gi|255767371|ref|NP_389519.2| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. 168] gi|321315404|ref|YP_004207691.1| flagellar biosynthesis protein FliR [Bacillus subtilis BSn5] gi|239938629|sp|P35537|FLIR_BACSU RecName: Full=Flagellar biosynthetic protein fliR gi|225184998|emb|CAB13510.2| component of the flagellar export machinery [Bacillus subtilis subsp. subtilis str. 168] gi|320021678|gb|ADV96664.1| flagellar biosynthesis protein FliR [Bacillus subtilis BSn5] Length = 259 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/235 (21%), Positives = 110/235 (46%), Gaps = 12/235 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN-RAYY 69 + L+ R+ + + +P +P R+ FA +++ + TID + +Y Sbjct: 10 AFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVIC----FSTIDKPPSLEIDEHY 65 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLI 128 L E +G GL+ + +Q GS I +G ++ + + A++PL I Sbjct: 66 MLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVID-PQTGAQSPLIGQFI 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGN-IFSSFV-NMLQTTFMIMLRL 185 + LL + ++ HH + + S+ I + Q NFG+ F+ F+ F+I ++ Sbjct: 125 YTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQM 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 S+P + + ++++G++ + VPQ+ ++ + P I + L +C+S+ +V + Sbjct: 185 SAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVR 239 >gi|83647844|ref|YP_436279.1| flagellar biosynthesis protein FliR [Hahella chejuensis KCTC 2396] gi|83635887|gb|ABC31854.1| Flagellar biosynthesis pathway, component FliR [Hahella chejuensis KCTC 2396] Length = 261 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 113/229 (49%), Gaps = 14/229 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD--TIDLQNFVNRAYYSKLVMV 75 R+ S +M P L +P +VRL ++ +I+++P L +D + + A + V++ Sbjct: 22 RISSFMMTTPILGTQIVPARVRLALSLLMTILIVPSLPPVPEVDPLSVNSVAIIIQQVLI 81 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 L +G LL +++ + TG +++ +GL + + ++ + T L+ ++ L Sbjct: 82 GLAMGFAVLLLFQLFVV----TGQIVAMNMGLGFASMVDPTNGITVTALSQFYLMLVTLL 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIF---SSFVNMLQTTFMIMLRLSSPFLF 191 + H +F A+V+S+ +PI QE++ + + S M + MI L P + Sbjct: 138 FLSMGGHLVMFEAVVESFRFLPISAQEVDVWSWWYLASRISWMFASALMIAL----PAVT 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NIS G++ + PQ+ I+ I P + G + +SI I+ QF+ Sbjct: 194 ALLIVNISFGVMTRAAPQMNIFSIGFPMTVLFGLVVFWISIGGILPQFT 242 >gi|332981451|ref|YP_004462892.1| flagellar biosynthetic protein FliR [Mahella australiensis 50-1 BON] gi|332699129|gb|AEE96070.1| flagellar biosynthetic protein FliR [Mahella australiensis 50-1 BON] Length = 259 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 100/211 (47%), Gaps = 7/211 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ--NFVNRAY 68 + L+ R+ +L P +P +++ + ++VLL +TI LQ + VN + Sbjct: 12 TFLLVFMRMTGLFVLSPVFGRRNVPAYLKIGMSFMMAMVLL----NTIPLQSIDIVNNIW 67 Query: 69 -YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y ++ E+ +G G + + + G ++ IG + + + +A + +L Sbjct: 68 LYVWILFKEMLIGLAMGYITTLAFSAILIAGQIMDFQIGFGMVNAFDPVNEVAVPIVGNL 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ LL + ++ HH + L SY +PIG +I + + TF+ ++L+ Sbjct: 128 INMMALLLFFGMNGHHVLISLLFDSYTVLPIGDFSIKPDILWYILEIFVQTFVWAIKLAI 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + ++ + +G+L++ +PQ+ ++ + P Sbjct: 188 PLMAVLLLTEVMLGVLSRALPQMNVFVMGMP 218 >gi|268679050|ref|YP_003303481.1| flagellar biosynthetic protein FliR [Sulfurospirillum deleyianum DSM 6946] gi|268617081|gb|ACZ11446.1| flagellar biosynthetic protein FliR [Sulfurospirillum deleyianum DSM 6946] Length = 257 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 11/236 (4%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ R+ P S + IP+ ++ + L P L +N + Sbjct: 17 FLLFARLSGVFAFFPFFSHANIPLSIKTSITFFMVVFLFPLLSPLHVTPTLLN---LTLA 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ EL +G + GL + + LQ G IS +G + + + S + L+ + +IG Sbjct: 74 IVSELLIGFIAGLFLTIALSILQMAGMQISFVMGFTMASVVDPQTSTSIPVLSQIFSLIG 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQ---ELN-FGNIFSSFVNMLQTTFMIMLRLSSP 188 L+ + + HHQ+ +V S +P+G E++ G I + M F+ LS P Sbjct: 134 LMIVLAFNGHHQMLLFIVDSLSLLPLGTFYPEMSVVGYILKATTGMFVYGFI----LSFP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L F ++ ++ G+L K +PQ + + P I + + + +++ + F F+ Sbjct: 190 VLAFSLLMDVVFGMLMKTMPQFNLLVVGFPIRIAVSLVVIIVTLASTMLLFKREFM 245 >gi|68164508|gb|AAY87237.1| predicted flagellar biosynthetic protein [uncultured bacterium BAC17H8] Length = 270 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVR--LCFAMAFSIVLLPFLWDTIDL-QNFV 64 +++ FL R+G+ ++ P ++P++VR + F +A +IV D D+ + + Sbjct: 20 VLLQYFLASLRIGAFLLSAPIFGARWLPLKVRIIMAFTLAAAIV-----GDVPDVGTDLL 74 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + ++ +E+ +G GL + ++ + G I+++ GL + + +TP+ Sbjct: 75 TSSVGVSMMFIEIAIGLTAGLTLTIWFAAVLLAGEKIASSAGLGYAAQVDPATG-GQTPV 133 Query: 125 NSLIGIIGLLALWV-IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 S I + LL +++ ID H +++SY +P+G + + +S + + F+ Sbjct: 134 VSQILYLFLLVIFLSIDGHLLAIGTMLESYRILPVGASVAPEVLIASGITAAGSMFLAAT 193 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213 + P ++ N++IG++ + PQ+ ++ Sbjct: 194 IIMLPITTVLLMINVAIGIITRSAPQLNLF 223 >gi|323975951|gb|EGB71045.1| flagellar biosynthetic protein FliR [Escherichia coli TW10509] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + M+VR+ ++A +I++ P + D + L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTMRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|15644802|ref|NP_206972.1| flagellar biosynthesis protein FliR [Helicobacter pylori 26695] gi|2313256|gb|AAD07238.1| flagellar biosynthetic protein (fliR) [Helicobacter pylori 26695] Length = 255 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|205373391|ref|ZP_03226195.1| flagellar biosynthesis protein FliR [Bacillus coahuilensis m4-4] Length = 258 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 10/238 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ RV S + +P S IP Q RL S +L ++ +++ V Y L+ Sbjct: 13 LILMRVASFFVTMPLFSYRTIPAQHRL----GLSAILAFLMYYSVEADPLVIDGLYFLLI 68 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E +G + G + +Q G I +G + + + + L Sbjct: 69 LKEAMVGLLIGFAAYMIISAIQIAGGFIDFQMGFAIANVVDPQTGMQSPITGQYLYTFAL 128 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF----MIMLRLSSPF 189 L L ++ HH + + SY IPI L F N S V + T F +I ++S+P Sbjct: 129 LLLLSVNGHHIMLDGIFHSYQFIPIDSMLPFEN--ESIVLFITTAFSRVFVIAFQISAPV 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + +I++G++ + VPQ+ I+ + P I + + L L + ++ +F Y F Sbjct: 187 VATLFLVDIALGIVARTVPQLNIFVVGFPIKIAVSFIILILVMGSMMIVIQQTFEYMF 244 >gi|317008844|gb|ADU79424.1| flagellar biosynthesis protein FliR [Helicobacter pylori India7] Length = 255 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSTIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCTSVFLQIVFASLVFATDSISFSMGLTMASTYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|332140594|ref|YP_004426332.1| flagellar biosynthesis protein FliR [Alteromonas macleodii str. 'Deep ecotype'] gi|327550616|gb|AEA97334.1| flagellar biosynthesis protein FliR [Alteromonas macleodii str. 'Deep ecotype'] Length = 259 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 4/208 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + + GLS IP QVR + ++V++P + ++N V+ + +V+ +L Sbjct: 21 RISGLFVAMIGLSAKSIPPQVRALLGIMLTLVIMPVV-PPSPIENLVSVGTF-LIVIQQL 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G + + G +I+ GL + + + + + I+ L W Sbjct: 79 LIGIAIGFISMMVLNTFVLAGQIIAMQTGLGFASIVDPVNGINVPAVGQFYLILATLLFW 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 +D H + +V S+ PIG+ G F + F+ + LS + ++ N Sbjct: 139 TLDGHLSMIQMIVMSFEAFPIGEAWWTGEQFRDIAHWGGWMFVSAITLSLAPIVSLLIVN 198 Query: 198 ISIGLLNKLVPQIPIYFI--STPYLIGL 223 ++ G++ K PQ+ I+ I S L+GL Sbjct: 199 LAFGVMTKAAPQLNIFSIGFSIAQLMGL 226 >gi|207092537|ref|ZP_03240324.1| flagellar biosynthesis protein FliR [Helicobacter pylori HPKX_438_AG0C1] Length = 255 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|114046867|ref|YP_737417.1| flagellar biosynthesis protein FliR [Shewanella sp. MR-7] gi|113888309|gb|ABI42360.1| flagellar biosynthetic protein FliR [Shewanella sp. MR-7] Length = 265 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 24/235 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 RV S +M++ + P +VRL A+A ++ + P L D + F A + ++ +++ Sbjct: 21 RVTSMLMVMVVFGATTTPTRVRLLLAVAITLAIAPVLPPVKDAELFSLSAVFITAQQIII 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V ++++ + L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVTQMVMQTFVL----TGQII------GMQTSLGFASMVDPGSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT---TFMIMLRLS 186 ++ L +D H + LV S+ T+PI N G +S+ ++ + F L +S Sbjct: 131 LLATLIFLAVDGHLLMIRMLVASFETLPIS---NQGLTLTSYRSLAEWGSYMFGAALTMS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F Sbjct: 188 LSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEE 242 >gi|317176989|dbj|BAJ54778.1| flagellar biosynthesis protein FliR [Helicobacter pylori F16] Length = 255 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|297620335|ref|YP_003708472.1| putative type III secretion inner membrane protein SctT [Waddlia chondrophila WSU 86-1044] gi|297375636|gb|ADI37466.1| putative type III secretion inner membrane protein SctT [Waddlia chondrophila WSU 86-1044] Length = 281 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 115/251 (45%), Gaps = 19/251 (7%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-- 61 P + + LFL + R+ I L P +P V+L FA++ + +P L + Sbjct: 18 DPGAVFILLFLFLARILPIIALSPFFGARVLPHPVKLAFAISLFAIFVPHLLVVTQSKLS 77 Query: 62 -NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 ++ A ++K ELF+G + G LI + +Q G +I G S+ ++D Sbjct: 78 FTPLSLALFAK----ELFVGYLIGFLISIPFTIVQTAGMLIDHQRG---GASLMVNDPTI 130 Query: 121 E---TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVN-- 173 + +PL ++ ++ + ++ID A+ SY IP + N F + S+F Sbjct: 131 QNQSSPLGTMFNMVLIYIFFMIDGPFYFIDAINTSYSAIPPDRFFNPQFFDKSSAFSEIA 190 Query: 174 --MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 +L ++ ++ +SP L ++ ++ +G+ N+L Q+ I F+ P LG + + Sbjct: 191 FQLLNNAMVLAIQFASPALIAILMTDVFLGIANRLATQVQITFLGLPLKSLLGLTLITIG 250 Query: 232 IEIIVYQFSHS 242 ++++ Q + Sbjct: 251 WKVLINQMAED 261 >gi|332673015|gb|AEE69832.1| flagellar biosynthetic protein FliR [Helicobacter pylori 83] Length = 255 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSTIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|108562594|ref|YP_626910.1| flagellar biosynthesis protein FliR [Helicobacter pylori HPAG1] gi|107836367|gb|ABF84236.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1] Length = 255 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|319787088|ref|YP_004146563.1| flagellar biosynthetic protein FliR [Pseudoxanthomonas suwonensis 11-1] gi|317465600|gb|ADV27332.1| flagellar biosynthetic protein FliR [Pseudoxanthomonas suwonensis 11-1] Length = 264 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 23/204 (11%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ +M +P + +P+++R+ A A ++ L P L + V EL Sbjct: 27 RTGALLMAMPLIGTRAVPLRLRVLVAGALAMALAPMLPKPPEFAGLDAATVLG--VAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G +R+ + G +IS +GL+ ++D L T G++A W Sbjct: 85 AVGVTMGFCLRLVFEAGAYAGELISHGMGLSFAQ---MNDPLRGT-------SSGVVAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLS 186 D H V LV+SY +PIG ++ ++ V + L L+ Sbjct: 135 FYIAFGLLFFTSDGHLAVITMLVRSYQALPIGAAWVDAAAGLATPVELFSAVLRGGLGLA 194 Query: 187 SPFLFFYIVFNISIGLLNKLVPQI 210 P + + N++ G+L K P + Sbjct: 195 LPLMVAMLATNLTFGVLAKAAPSL 218 >gi|261837621|gb|ACX97387.1| flagellar biosynthetic protein [Helicobacter pylori 51] Length = 255 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYAP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|302872553|ref|YP_003841189.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor obsidiansis OB47] gi|302575412|gb|ADL43203.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor obsidiansis OB47] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 14/224 (6%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-----VNRA 67 FL++ R+ + P IP ++ FA S+++ + NF N Sbjct: 16 FLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSMIV-------VTTYNFSYSVPTNVE 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y +V+ E +G + G + + + G +I AIG + + + L + Sbjct: 69 EYIFVVIKEFIVGLLIGYISYMIFSAILLGGQIIDNAIGFGMANVIDPMSEIQVPLLGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS-SFVNMLQTTFMIMLRLS 186 + + L+ + D HH + A+ SY +PIG F F+ +F+ F+I + +S Sbjct: 129 LYLYMLVMFFGTDAHHLLIRAIFYSYKLVPIGYG-GFKTEFTWNFLRFFSELFLIGVEIS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 P L ++ +I + +L++ VPQ+ ++ + P I +G L L + Sbjct: 188 LPILMSMLIVDIILAVLSRAVPQMNVFMVGIPIKITIGFLVLVI 231 >gi|95929866|ref|ZP_01312607.1| flagellar biosynthetic protein FliR [Desulfuromonas acetoxidans DSM 684] gi|95134162|gb|EAT15820.1| flagellar biosynthetic protein FliR [Desulfuromonas acetoxidans DSM 684] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/229 (19%), Positives = 106/229 (46%), Gaps = 3/229 (1%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 + RV + + +P +P + ++ A+ + ++ P + + +F L+ Sbjct: 18 LARVAAILGSMPVFGSGQVPARAKVILALFMTFLIFPGVEPLLPSYSF-EPLPLMLLIAN 76 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E LG + G + R+ ++F G+++ +G + + ++ + +L Sbjct: 77 EALLGIMMGFIARLIFTAVEFGGTIVGYQMGFAAANVYDPQNQRQVSLISQFQNVFAILV 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFLFFYI 194 +D HH A+V SY +P G L+F + F+ + F++ +R S+P L + Sbjct: 137 FLALDVHHLFIEAMVDSYRQLPPGL-LDFSSEAVPFIMELTGHMFVLAIRFSAPILAVLL 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + +G+L ++ PQ+ ++ +S P IG+ + + L++ ++V + F Sbjct: 196 LSGLVLGILARVFPQLNVFLLSFPINIGMAFIIIGLTMNMVVAMLNREF 244 >gi|317012018|gb|ADU82626.1| flagellar biosynthesis protein FliR [Helicobacter pylori Lithuania75] Length = 255 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|292669765|ref|ZP_06603191.1| flagellar protein required for flagellar formation [Selenomonas noxia ATCC 43541] gi|292648562|gb|EFF66534.1| flagellar protein required for flagellar formation [Selenomonas noxia ATCC 43541] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 94/199 (47%), Gaps = 10/199 (5%) Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAY----YSKLVMVELFLGCVHGLLIRVYTLGL 94 R+ A+A ++VL P ID V ++ + ELF+G + G + + + Sbjct: 41 RVGIALAMTVVLFP----VIDRLGVVTAPETIIMFAVAAVGELFIGWLIGFVAYISFAAI 96 Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154 G V+ +G + + + + S + + ++ L V + HH + ALV+S+ Sbjct: 97 TMAGKVMDMQVGFAIVNVVDPTSGQQIPLIGSFLYNLAVIILLVTNGHHMIIAALVESFR 156 Query: 155 TIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213 +P+ G E N +I N F+ ++++ P F ++ N+ +G+L++ +PQ+ I+ Sbjct: 157 AVPLAGMEPNL-SIALLLANFTGGIFVTGMKIAMPITFAILLTNVGLGILSRTMPQMNIF 215 Query: 214 FISTPYLIGLGSLFLCLSI 232 + P + +G + L + I Sbjct: 216 VVGIPMQLMIGIVVLSMII 234 >gi|254973928|ref|ZP_05270400.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-66c26] gi|255091314|ref|ZP_05320792.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile CIP 107932] gi|255312972|ref|ZP_05354555.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-76w55] gi|255515731|ref|ZP_05383407.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-97b34] gi|255648825|ref|ZP_05395727.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-37x79] gi|260682043|ref|YP_003213328.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile CD196] gi|260685641|ref|YP_003216774.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile R20291] gi|306518939|ref|ZP_07405286.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-32g58] gi|260208206|emb|CBA60557.1| flagellar export protein [Clostridium difficile CD196] gi|260211657|emb|CBE01921.1| flagellar export protein [Clostridium difficile R20291] Length = 604 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 3/167 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLL 134 E G + G + + ++ GS++ +GL++ +M +S+ +T L ++L+ + Sbjct: 64 ETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSM-INMFDPNSMTQTTLIDNLMNWTARM 122 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + +D HH + + S+ IPIG+ NI +N+ F+ +++ P + + Sbjct: 123 IFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNI-DYIINIFVQCFLTGFKIAIPIVLCLL 181 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + +GL+++ VPQ+ + I P I +G +SI +IV Q SH Sbjct: 182 MADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQISH 228 >gi|288553047|ref|YP_003424982.1| flagellar biosynthesis protein FliR [Bacillus pseudofirmus OF4] gi|288544207|gb|ADC48090.1| flagellar biosynthesis protein FliR [Bacillus pseudofirmus OF4] Length = 258 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ RV + +LP IP ++ A+ S +++ T+D + A + Sbjct: 10 AFLLVFVRVLAFFSVLPIYGHRSIPTTHKIGLALMLSWIMI----FTLDTPEVLIDAVFF 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIG 129 LV+ E+ +G GL+ + +Q G I +G + + + A++PL + Sbjct: 66 LLVIKEILVGLSVGLIAMILLYAVQVAGGFIDFNMGFMIANVVD-PQTGAQSPLIGGYLY 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFG--NIFSSFVNMLQTTFMIMLRLS 186 LL L ++ HH + + SY +P+ Q L FG NI F+I +++ Sbjct: 125 TFALLFLLAVNGHHLLLDGIFYSYQFVPMDQVFLPFGQENIVHYIATTFNAMFIIAFQMA 184 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLSIEIIVYQ 238 P + + ++++G++++ VPQ+ ++ + P L+GL L + +S+ I+V Q Sbjct: 185 FPIVGSLFLVDVALGMVSRAVPQMNVFVVGMPLKILVGLPLLIVYMSVFIMVVQ 238 >gi|261839034|gb|ACX98799.1| flagellar biosynthesis protein FliR [Helicobacter pylori 52] gi|315586173|gb|ADU40554.1| flagellar biosynthetic protein FliR [Helicobacter pylori 35A] Length = 255 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|254778887|ref|YP_003056992.1| flagellar biosynthesis protein FliR [Helicobacter pylori B38] gi|254000798|emb|CAX28722.1| Flagellar biosynthetic protein FliR; putative membrane protein [Helicobacter pylori B38] Length = 255 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|317010452|gb|ADU84199.1| flagellar biosynthesis protein FliR [Helicobacter pylori SouthAfrica7] Length = 255 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L +F N Y Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------DFSNATYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 ESFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGAQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|295706268|ref|YP_003599343.1| flagellar biosynthetic protein FliR [Bacillus megaterium DSM 319] gi|294803927|gb|ADF40993.1| flagellar biosynthetic protein FliR [Bacillus megaterium DSM 319] Length = 258 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 102/216 (47%), Gaps = 17/216 (7%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ RV S + +P S IP ++ + + S+++ TIDL A + Sbjct: 10 AFLLVLVRVTSFFITVPLFSYKTIPAVHKVGLSASLSVII----ATTIDLPVVSLDAQFL 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIG 129 LV+ E +G GL V+ + +Q G +I +G + + + A++P L + Sbjct: 66 LLVVKECAVGLFIGLTAYVFIMAIQIAGGLIDFQVGFAIANVID-PQTGAQSPILGQYLY 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTI-------PIGQELNFGNIFSSFVNMLQTTFMIM 182 + LL L + HH + + SY I P+G + +I + F +M F++ Sbjct: 125 VFALLFLLSTNGHHLLIDGIYNSYLIIPLDKVAFPVGSQAFATHIITVFSSM----FLVA 180 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +++S P + + +I++G++ + VPQ+ I+ + P Sbjct: 181 VQMSLPLVGSLFLVDIALGIVARTVPQLNIFVVGFP 216 >gi|51246525|ref|YP_066409.1| flagellar biosynthetic protein (FliR) [Desulfotalea psychrophila LSv54] gi|50877562|emb|CAG37402.1| related to flagellar biosynthetic protein (FliR) [Desulfotalea psychrophila LSv54] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 96/215 (44%), Gaps = 2/215 (0%) Query: 11 SLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 LFL+V RV + +P +S P Q+++ A + ++VL P + I ++ + + Sbjct: 12 QLFLVVLSRVAGFVGAIPVISSVQSPKQIKIALACSVALVLFPIMSPVIHIKE-LTMPSF 70 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + L++ E+ +G G ++ ++F +VI +G ++ Sbjct: 71 ALLIVAEVLVGTTIGFAAKLIFTSIEFGATVIGYQMGFAAANVFDPQTKGQVALISQFQN 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L ID HH + SY +P GQ G + + F + ++ S+P Sbjct: 131 SFAILIFLAIDGHHIFIHTASISYQFLPPGQFNYSGGAVPYLIELTAHMFQMGIQFSAPV 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 L ++ + +G+L+++ PQ+ ++ +S P IGL Sbjct: 191 LAVLLLSGLILGILSRVFPQLNVFMLSFPINIGLA 225 >gi|27904583|ref|NP_777709.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395828|sp|Q89AZ0|FLIR_BUCBP RecName: Full=Flagellar biosynthetic protein fliR gi|27903980|gb|AAO26814.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 257 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 11/206 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 +LF R+ + P + +I +++L A S + FL VN A +S Sbjct: 15 NLFFPAVRILALFSTAPLFNSKFIEKKIKLIMAFVISWIFSSFLPK-------VNIAIFS 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +++ ++ +G + GL +++ + +G +IS +GL+ + + + L+ Sbjct: 68 VDGILIIIEQMLIGILLGLTMQLIFSSIFMSGEIISLQMGLSFSSLFDFNSRSNLSALSH 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I LL + H + AL ++ TIPI + NIF VN + F + L Sbjct: 128 FVHIFLLLLFLEWNGHIWMLSALFDTFITIPIQKIYLDPNIFLKVVNFSKYIFFDSIMLL 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPI 212 P + ++ N+SIG+LN++ PQI I Sbjct: 188 FPIIIVQLLLNLSIGILNRVAPQISI 213 >gi|269792926|ref|YP_003317830.1| flagellar biosynthetic protein FliR [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100561|gb|ACZ19548.1| flagellar biosynthetic protein FliR [Thermanaerovibrio acidaminovorans DSM 6589] Length = 259 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 98/207 (47%), Gaps = 12/207 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV +M P + P+ VR+ A+ S++++P + + + + + E Sbjct: 19 RVLGLLMSSPVFMLPSWPIPVRMWLALMLSLLMVPSVDPQVPMVLLATWTGMAIFAVREF 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G + GLL + LQ +G + + +GL + T + D E + L + LL +W Sbjct: 79 LVGAMVGLLSGLPLYALQLSGYLEGSQMGLAMAT---LFDPTQEGNVALLGQVKYLLGIW 135 Query: 138 VI---DFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + + H + A+ +S+ IP+G+ +L G F ++ L F++ +R S P + Sbjct: 136 FLLHWNGHLVLIEAINRSFSLIPLGKGVLDLPPGQPFGRWITDL---FLLAIRFSLPIMG 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTP 218 ++ ++ +G + + VPQI ++ + P Sbjct: 193 ALLLADVGLGFVARTVPQINVFILGIP 219 >gi|323493114|ref|ZP_08098245.1| putative flagellar biosynthetic protein FliR [Vibrio brasiliensis LMG 20546] gi|323312585|gb|EGA65718.1| putative flagellar biosynthetic protein FliR [Vibrio brasiliensis LMG 20546] Length = 258 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 9/218 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 RVG+ + +P S IP+ VR A++ +V P + +DL + + + + Sbjct: 21 RVGAVFISMPFFGDSLIPVWVRSLLALSIVVVAAPLMPAMPAVDLFSLTSLFLAFEQAIW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 LF G + +L ++T G +IS +GL + + ++ L + I L Sbjct: 81 GLFFGLILHMLFAIFTT----LGQIISMQMGLGMAMMNDPVNGMSVAILGRIFLIFSTLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H + L++S+ P+G L+F + F VN+ F L L+ P + ++ Sbjct: 137 FLSLEGHLVILDILIQSFRVWPVGSGLSFAS-FQGVVNLFSWMFASALALALPAIVSMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 NIS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 196 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISIS 233 >gi|329943278|ref|ZP_08292052.1| bacterial export s, 1 family protein [Chlamydophila psittaci Cal10] gi|332287856|ref|YP_004422757.1| putative type III secretion inner membrane protein [Chlamydophila psittaci 6BC] gi|313848428|emb|CBY17432.1| putative type III export protein [Chlamydophila psittaci RD1] gi|325507239|gb|ADZ18877.1| putative type III secretion inner membrane protein [Chlamydophila psittaci 6BC] gi|328814825|gb|EGF84815.1| bacterial export s, 1 family protein [Chlamydophila psittaci Cal10] gi|328915118|gb|AEB55951.1| flagellar biosynthetic protein FliR, putative [Chlamydophila psittaci 6BC] Length = 289 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/224 (19%), Positives = 104/224 (46%), Gaps = 7/224 (3%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 ++P L P +++ A+++ ++ P + + + N+++ + L++ E+ +G + G Sbjct: 45 IVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHIANYLDDDMFYILIVKEICIGTLIG 104 Query: 85 LLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 ++ Q GS I+ G+ L+ + + +P + W+ H Sbjct: 105 FILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLSGGHR 164 Query: 144 QVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 V L++S IPI + L I+ + + M Q ++ ++LS+P ++ + Sbjct: 165 IVLTILLQSLEVIPIHKFLPMEMMSLDAPIWVALIKMCQLCLIMTIQLSAPAAVAMLMSD 224 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 225 LFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 268 >gi|296330852|ref|ZP_06873327.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674370|ref|YP_003866042.1| flagellar export machinery protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151857|gb|EFG92731.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412614|gb|ADM37733.1| component of the flagellar export machinery [Bacillus subtilis subsp. spizizenii str. W23] Length = 259 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/235 (21%), Positives = 109/235 (46%), Gaps = 12/235 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN-RAYY 69 + L+ R+ + + +P +P R+ FA +++ + TID + Y Sbjct: 10 AFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVIC----FSTIDKPPSLEIDGQY 65 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLI 128 L E +G GL+ + +Q GS I +G ++ + + A++PL I Sbjct: 66 MLLTFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVID-PQTGAQSPLIGQFI 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGN-IFSSFV-NMLQTTFMIMLRL 185 + LL + ++ HH + + S+ I + Q NFG+ F+ F+ F+I ++ Sbjct: 125 YTMALLFMLSVNAHHLLLDGIFYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQM 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 S+P + + ++++G++ + VPQ+ ++ + P I + L +C+S+ +V + Sbjct: 185 SAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAISFIMLIVCMSVMFVVVR 239 >gi|322833208|ref|YP_004213235.1| flagellar biosynthetic protein FliR [Rahnella sp. Y9602] gi|321168409|gb|ADW74108.1| flagellar biosynthetic protein FliR [Rahnella sp. Y9602] Length = 261 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P S +P +V+L M + ++ P L +D F A + L Sbjct: 17 FWPLLRILALISTAPITSEKSVPNRVKLGLGMMITFLIAPSL-PPVDTPIFSTPALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G+ +++ ++ G ++ +G++ T S+ L L + ++ Sbjct: 74 AMQQIMIGTALGITMQLAFAAIRMAGEIMGLQMGISFATFYDPSNRLNTPLLAQFLNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + L S+ T+PI F + F + L+ P + Sbjct: 134 VLLFLSFNAHLWLISLLADSFHTLPISHNPVNAEGFMAVAKAGSIVFSGGMMLALPIVTL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ ++ I P + +G L + L + ++ H F Sbjct: 194 LLTLNMALGLLNRVTPQLSVFVIGFPLTLSIGILAISLMMPMLAPFSEHLF 244 >gi|167037651|ref|YP_001665229.1| flagellar biosynthesis protein FliR [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116066|ref|YP_004186225.1| flagellar biosynthetic protein FliR [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856485|gb|ABY94893.1| flagellar biosynthetic protein FliR [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929157|gb|ADV79842.1| flagellar biosynthetic protein FliR [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 100/215 (46%), Gaps = 9/215 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT---IDLQNFVNRAYYS 70 L+ R+ +L P +P ++ ++++ +DT +DLQ N Y Sbjct: 16 LLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIV----FDTMGPVDLQ-INNVLDYF 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +V+ E +G V GL + + G +I +G L + I + + I I Sbjct: 71 IVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFIYI 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + +L +++ H+ +F L KS IPIG+ + + M+ F++ R+S+P Sbjct: 131 LTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGMSQVLTKMVSDMFILGFRISAPI 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + ++ ++++G++++ +PQ+ ++ I P I +G Sbjct: 191 ILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVG 225 >gi|220929450|ref|YP_002506359.1| flagellar biosynthesis protein FliR [Clostridium cellulolyticum H10] gi|219999778|gb|ACL76379.1| flagellar biosynthetic protein FliR [Clostridium cellulolyticum H10] Length = 265 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/229 (20%), Positives = 105/229 (45%), Gaps = 11/229 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFA-----MAFSIVLLPFLWDTIDLQNFVNRAY 68 LI R+ + P IP+ ++ FA +A S++ + + +T NF+ A Sbjct: 17 LIFVRMTGLFVTAPIFGRRNIPVYYKVGFAFITAILASSVIRVDHIINT---DNFLIFAL 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y ++ E +G + G + + G +I IG + ++ +L Sbjct: 74 Y---ILKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPISNIQIPVTANLY 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ ++ + + HH + AL +S+ IP+G + + + ++Q F + ++++P Sbjct: 131 FILSMIIFLLTNGHHMLIRALYESFQIIPLGSAVIGPKLKDDVIGIMQGVFSMGFKIAAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + + ++ +G+++K +PQ+ ++ + P I +G L + ++I VY Sbjct: 191 IVAAIFITDVVLGIISKTIPQMNVFILGMPLKIFVGILIILITIPAFVY 239 >gi|307264885|ref|ZP_07546447.1| flagellar biosynthetic protein FliR [Thermoanaerobacter wiegelii Rt8.B1] gi|306920143|gb|EFN50355.1| flagellar biosynthetic protein FliR [Thermoanaerobacter wiegelii Rt8.B1] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 87/181 (48%), Gaps = 3/181 (1%) Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 N Y +V+ E +G V GL + + G +I +G L + I + Sbjct: 65 NVLDYFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLM 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIML 183 + I I+ +L +++ H+ +F L KS IPIG+ + I M+ F++ Sbjct: 125 GNFIYILTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGISQVLAKMVSDMFILGF 184 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLSIEIIVYQFSH 241 R+S+P + ++ ++++G++++ +PQ+ ++ I P +G+ +L + L + + + F Sbjct: 185 RISAPIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMF 244 Query: 242 S 242 S Sbjct: 245 S 245 >gi|225181593|ref|ZP_03735034.1| flagellar biosynthetic protein FliR [Dethiobacter alkaliphilus AHT 1] gi|225167701|gb|EEG76511.1| flagellar biosynthetic protein FliR [Dethiobacter alkaliphilus AHT 1] Length = 253 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 3/214 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LFLI R+ + I +LP + IP ++ FA F+ ++ FL + YY Sbjct: 9 LFLIFVRLSALIAVLPFFTWRGIPALPKIGFAGVFAYLI--FLASSPQEFEIPEHFYYYV 66 Query: 72 L-VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L V E+ G G L+ + + G ++ GL + + T + Sbjct: 67 LAVGSEVLFGLALGFLVLLIFAAARIAGQMVDVQAGLMMASVFDPQFGSQVTLFGQFYYL 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L+ ++ HH +F A+ +S + G + + + + + F+I +L+ P + Sbjct: 127 FALVFYLTVNGHHMLFMAIARSIELVTPGGVVFSPQLIPNVMQFIFQMFIIAFQLAVPVV 186 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 I ++++GLL+K VPQ+ ++ + P +G+ Sbjct: 187 AVLIFSDLALGLLSKTVPQLHVFMVGMPLKVGVA 220 >gi|302392377|ref|YP_003828197.1| flagellar biosynthetic protein FliR [Acetohalobium arabaticum DSM 5501] gi|302204454|gb|ADL13132.1| flagellar biosynthetic protein FliR [Acetohalobium arabaticum DSM 5501] Length = 258 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 1/205 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ R+ + P IP +++ A +++L P + D +L+ N Sbjct: 14 LIMLRLTGLFLTAPFFGSRVIPKRIKAALAFLVTLILSP-VVDGSNLELPTNILILLFNF 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + EL +G + G + + +Q G +IS +GL + M + + + ++ Sbjct: 73 LSELTIGLIFGFITILIFASIQLAGQMISMRMGLAMANIMDPMNGSSIAVIGQFKNVLAT 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L VI+ HHQ+ AL S+ IP+ +F + M F + +++ P + Sbjct: 133 LLFLVINGHHQLLRALKHSFDVIPLTGLRISDALFMKLLRMAGDLFPLAFQIALPIIAAL 192 Query: 194 IVFNISIGLLNKLVPQIPIYFISTP 218 + +++ GL+ + VPQ+ ++ + P Sbjct: 193 FLTDVAFGLVARTVPQMNVFVMGLP 217 >gi|160880829|ref|YP_001559797.1| flagellar biosynthetic protein FliR [Clostridium phytofermentans ISDg] gi|160429495|gb|ABX43058.1| flagellar biosynthetic protein FliR [Clostridium phytofermentans ISDg] Length = 255 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 8/206 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY--YS 70 F+I+ R+ + I P S+ +P +V++ ++ +I+L TI V ++ Sbjct: 12 FVILVRISAFIYTGPFFSLKNVPQKVKIGLSLTLAIIL----NQTIPYSELVYEGVIGFA 67 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +++ E G + G + L G ++ IG ++ + T + Sbjct: 68 IVIVGEALAGAIMGFFSNICFQILSLAGQLMDMEIGFSMVNEFDPISNAQVTITANFYHY 127 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L L + + HH + ALV SY IP+G +LN I++ V + F+I R+ P Sbjct: 128 AVMLFLLITNMHHYIIKALVDSYQVIPVGGAKLN-PLIYTVMVQFVVDFFVIAFRIILPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFI 215 ++ N+ + +L K+ PQ+ ++ I Sbjct: 187 FASMLIVNVVLAILAKVAPQMNMFVI 212 >gi|260853446|ref|YP_003227337.1| putative lateral flagellar export pore protein [Escherichia coli O26:H11 str. 11368] gi|300817292|ref|ZP_07097510.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1] gi|307315218|ref|ZP_07594797.1| flagellar biosynthetic protein FliR [Escherichia coli W] gi|331666525|ref|ZP_08367399.1| flagellar biosynthetic protein FliR [Escherichia coli TA271] gi|257752095|dbj|BAI23597.1| predicted lateral flagellar export pore protein [Escherichia coli O26:H11 str. 11368] gi|300530268|gb|EFK51330.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1] gi|306905399|gb|EFN35936.1| flagellar biosynthetic protein FliR [Escherichia coli W] gi|315059467|gb|ADT73794.1| Flagellar biosynthetic protein fliR [Escherichia coli W] gi|323158015|gb|EFZ44116.1| flagellar biosynthetic protein FliR [Escherichia coli EPECa14] gi|323171039|gb|EFZ56688.1| flagellar biosynthetic protein FliR [Escherichia coli LT-68] gi|323181525|gb|EFZ66945.1| flagellar biosynthetic protein FliR [Escherichia coli 1357] gi|323379975|gb|ADX52243.1| flagellar biosynthetic protein FliR [Escherichia coli KO11] gi|331065749|gb|EGI37633.1| flagellar biosynthetic protein FliR [Escherichia coli TA271] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D I L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLISLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|150020742|ref|YP_001306096.1| flagellar biosynthetic protein FliR [Thermosipho melanesiensis BI429] gi|149793263|gb|ABR30711.1| flagellar biosynthetic protein FliR [Thermosipho melanesiensis BI429] Length = 254 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 26/216 (12%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 +++ R+ ++ P LS +IP V++ ++ S ++LP ++I L V S + Sbjct: 16 MLISRITGMFIITPLLSGRFIPTTVKVFLVLSLSYMMLP-QTNSIPLNTPVIHIVLS--L 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG- 132 +G GL+ + G ++ G L TSM ++ E+P IIG Sbjct: 73 TNNFIVGFAMGLMAFMILGAFSIAGELLGVESGFGLATSM--DPTMEESP------IIGQ 124 Query: 133 ---LLALWV---IDFHHQVFYALVKSYGTIPIGQEL---NFGN-IFSSFVNMLQTTFMIM 182 LLA++V ++ H V+ A++ S P+ + NF I + FV M F I Sbjct: 125 FVFLLAIFVFISLNGHLVVYEAILDSIKIFPLDLDFLDFNFTKFITTKFVEM----FFIA 180 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 L++ P + + + N+ +G+L++LVPQ+ ++ + P Sbjct: 181 LKIGLPVIGYMFIINVLLGILSRLVPQMNVFMVGIP 216 >gi|113969637|ref|YP_733430.1| flagellar biosynthesis protein FliR [Shewanella sp. MR-4] gi|113884321|gb|ABI38373.1| flagellar biosynthetic protein FliR [Shewanella sp. MR-4] Length = 265 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 24/235 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 RV S +M++ + P +VRL A+A ++ + P L D + F A + ++ +++ Sbjct: 21 RVTSMLMVMVVFGATTTPTRVRLLLAVAITLAIAPVLPPVKDAELFSLSAVFITAQQIII 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V ++++ + L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVTQMVMQTFVL----TGQII------GMQTSLGFASMVDPGSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT---TFMIMLRLS 186 ++ L +D H + LV S+ T+PI N G +S+ + + F L +S Sbjct: 131 LLATLIFLAVDGHLLMIRMLVASFETLPIS---NQGLTLTSYRALAEWGSYMFGAALTMS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F Sbjct: 188 LSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEE 242 >gi|210134371|ref|YP_002300810.1| flagellar biosynthesis protein FliR [Helicobacter pylori P12] gi|210132339|gb|ACJ07330.1| flagellar biosynthetic protein [Helicobacter pylori P12] Length = 255 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 ESFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+G+ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|15835467|ref|NP_297226.1| type III secretion inner membrane protein SctT [Chlamydia muridarum Nigg] gi|270285647|ref|ZP_06195041.1| type III secretion inner membrane protein SctT [Chlamydia muridarum Nigg] gi|270289656|ref|ZP_06195958.1| type III secretion inner membrane protein SctT [Chlamydia muridarum Weiss] gi|301337043|ref|ZP_07225245.1| type III secretion inner membrane protein SctT [Chlamydia muridarum MopnTet14] gi|7190878|gb|AAF39649.1| type III secretion inner membrane protein SctT [Chlamydia muridarum Nigg] Length = 289 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/235 (20%), Positives = 108/235 (45%), Gaps = 7/235 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ S + L+P L P +++ A ++ V+ P + + ++ + + L+ Sbjct: 33 LLSARMLSILALVPFLGAKLFPSPIKIGIAFSWMGVIFPKVIQDTTIAHYQDLDIFYILL 92 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + G L Q GS I+ G+ L+ + + +P Sbjct: 93 IKEIVIGVLIGFLFSFPFYAAQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHYFV 152 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIG----QELN--FGNIFSSFVNMLQTTFMIMLRLS 186 + W++ H + L++S IPI +E+ I+ + + M Q ++ ++LS Sbjct: 153 TIVFWLVGGHRIILSVLLQSLEVIPIHAVFPEEMMSLRAPIWIAILKMCQLCLIMTIQLS 212 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +P ++ ++ +G++N++ PQ+ + ++ + LG LFL L+ IV Q + Sbjct: 213 APAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFLGLLFLTLAWWFIVKQIDY 267 >gi|332994109|gb|AEF04164.1| flagellar biosynthesis protein FliR [Alteromonas sp. SN2] Length = 259 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 2/236 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 L L R+ + + GLS IP QVR + +++++P + + + VN + Sbjct: 14 DLMLPFMRISGLFVAMIGLSAQSIPPQVRALLGIMLTLIIMPVV-PPAPVDDLVNLGTF- 71 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + +L +G G + + G +I+ GL + + + + + I Sbjct: 72 ILGIQQLLIGVAIGFVSMMVLNTFVLAGQIIAMQTGLGFASIVDPVNGINVPAVGQFYLI 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L W +D H + + +V S+ PIG+ G F + F+ + LS + Sbjct: 132 LATLLFWTLDGHLAMIHMIVLSFHAFPIGEAWWTGEQFREIAHWGGWMFVSAITLSLAPI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 ++ N++ G++ K PQ+ I+ I +G L + ++++ F +L Sbjct: 192 VSLLIVNLAFGVMTKAAPQLNIFSIGFSIAQVMGLLIIWITLDNFTAHFETQWLRA 247 >gi|20807871|ref|NP_623042.1| flagellar biosynthesis protein FliR [Thermoanaerobacter tengcongensis MB4] gi|20516435|gb|AAM24646.1| Flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis MB4] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 109/233 (46%), Gaps = 13/233 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYS 70 L+ R+ +L P ++P ++ S+++ +P + +ID N Y Sbjct: 16 LLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFASLIVFDVMPPVSISID-----NVLTYF 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIG 129 LV+ E +G GL + + G +I +G L + I S A+ PL + I Sbjct: 71 LLVISEFLVGLTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIH-SEAQVPLMGNFIY 129 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ +L +++ H+ +F L KS IPIG+ + + M+ F I R+S+P Sbjct: 130 IMTILIFMLMNGHYLLFTFLAKSTEIIPIGKIYFDLSGMLQVLTKMVSDMFAIGFRISAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSIEIIVYQF 239 + ++ ++ +G++++ +PQ+ ++ + P +G+ +L + L + + + F Sbjct: 190 IILTTVLTDLVLGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIVDF 242 >gi|329897647|ref|ZP_08272171.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC3088] gi|328921096|gb|EGG28505.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC3088] Length = 238 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/232 (19%), Positives = 107/232 (46%), Gaps = 8/232 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-E 76 R+ + I+ P +S+ + + +R+ A+ + V+ P I++ N + +++V E Sbjct: 3 RISAMIIAAPLISLDVVSLPIRIVLAIVLTWVIYPL----IEVPNLNPLSPEGMVILVRE 58 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGIIGLLA 135 +F+G + ++V L G +S ++GL + M S P L+S + I L Sbjct: 59 MFVGIAIAVTLQVVNGALILAGQALSMSMGLGMAQIM--DPSAGTVPVLSSFLIIFSTLI 116 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 H +F+ +++S+ +PIG + + + F+ + ++ P + ++ Sbjct: 117 FMSFGGHSLLFFLILQSFEFVPIGAAFDLDAVILKVMAWTSMVFLGGILIAMPIMLTMLL 176 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 N+ +G++ + P + I+ + P +I G L +++ I ++ ++ F Sbjct: 177 VNLCLGIVTRSAPALNIFAVGFPAMILAGLALLIINLTNIAHRIEWLWVEAF 228 >gi|218133681|ref|ZP_03462485.1| hypothetical protein BACPEC_01550 [Bacteroides pectinophilus ATCC 43243] gi|217991056|gb|EEC57062.1| hypothetical protein BACPEC_01550 [Bacteroides pectinophilus ATCC 43243] Length = 260 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 102/206 (49%), Gaps = 14/206 (6%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ---NFVNRAYYS 70 LI+ R+ + + P + + P +V++ F+ A +I++ T+DL + Y+ Sbjct: 16 LILVRISTFVYAAPFFNTANTPNRVKIGFSFALAILVY-----TLDLGITYTYSGMLDYA 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP---LNSL 127 +V+ E +G + G + F+G +I +G+++ T I D +T +++L Sbjct: 71 AIVLSEAAVGLLLGYAANASVQIIMFSGHIIDVDMGISMAT---IFDPTTKTQVGIMSNL 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L L V + + A+V +Y IPIGQ +++++ V+ + F+I R++ Sbjct: 128 YYYLLSLLLIVSGLYRYLVSAIVDTYKVIPIGQAAFRPSLYTTIVDFIGDYFVIGFRIAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIY 213 P ++ N +G+L ++ PQ+ ++ Sbjct: 188 PMFACMMLLNCILGVLARIAPQMNMF 213 >gi|212709500|ref|ZP_03317628.1| hypothetical protein PROVALCAL_00542 [Providencia alcalifaciens DSM 30120] gi|212687838|gb|EEB47366.1| hypothetical protein PROVALCAL_00542 [Providencia alcalifaciens DSM 30120] Length = 259 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 78/160 (48%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G GL +++ ++ G VI +GL+ T + L ++ +I LL Sbjct: 77 QIVIGAAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRILNLITLLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + Y L S+ +PI + F F+ T F+ L L+ PF+ +++ Sbjct: 137 FLSFDGHLWLIYILTNSFELLPIQTTPLHRDGFWIFLQFANTIFINGLMLALPFITLFLI 196 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 N+S+G+LN++ PQ+ ++ + P + +G L L I I+ Sbjct: 197 LNLSLGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISIL 236 >gi|225159016|ref|ZP_03725326.1| type III secretion system inner membrane R protein [Opitutaceae bacterium TAV2] gi|224802395|gb|EEG20657.1| type III secretion system inner membrane R protein [Opitutaceae bacterium TAV2] Length = 252 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 14/220 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R +MLLP +P +R+ A F +L + + + ++ + E+ Sbjct: 15 RALGVVMLLPVPGGKVLPAMLRVACAFMFPTLLAGII-PHAPMPEPPGWPWLAEAAVREM 73 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 LG G + R+ G + G +I+ +GL + ++ PL + IG L + Sbjct: 74 VLGLALGFVGRLVFAGAELAGRLIANELGLVAAPGFDVPTP-SQEPLPAFIGSFAGLMFF 132 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM--LRLSSPFLFFYIV 195 ++ H A V+S+ P G F ++ + + T +I +R+++PF+ V Sbjct: 133 LMGGHEGALAAFVRSFDFAPAGAA-RF-SVLAGETLTICTAQVIEFGMRMAAPFIALNFV 190 Query: 196 FNISIGLLNKLVPQIPIYFISTPY--------LIGLGSLF 227 +++ +L + VP++ ++ IS P L G G LF Sbjct: 191 ISLAFSILGRAVPRMNVFIISYPVRTLVGLSLLAGAGGLF 230 >gi|254478864|ref|ZP_05092228.1| flagellar biosynthetic protein FliR [Carboxydibrachium pacificum DSM 12653] gi|214035177|gb|EEB75887.1| flagellar biosynthetic protein FliR [Carboxydibrachium pacificum DSM 12653] Length = 260 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 109/233 (46%), Gaps = 13/233 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYS 70 L+ R+ +L P ++P ++ S+++ +P + +ID N Y Sbjct: 16 LLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFTSLIVFDVMPLVPISID-----NVLTYF 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIG 129 LV+ E +G GL + + G +I +G L + I S A+ PL + I Sbjct: 71 LLVISEFLVGLTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIH-SEAQVPLMGNFIY 129 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ +L +++ H+ +F L KS IPIG+ + + M+ F I R+S+P Sbjct: 130 IMTILIFMLMNGHYLLFTFLAKSTEIIPIGKVYFDLSGMSQVLTKMVSDMFAIGFRISAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSIEIIVYQF 239 + ++ ++ +G++++ +PQ+ ++ + P +G+ +L + L + + + F Sbjct: 190 IILTTVLTDLILGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIVDF 242 >gi|226313052|ref|YP_002772946.1| flagellar biosynthesis protein FliR [Brevibacillus brevis NBRC 100599] gi|226096000|dbj|BAH44442.1| flagellar biosynthetic protein FliR [Brevibacillus brevis NBRC 100599] Length = 260 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/213 (21%), Positives = 96/213 (45%), Gaps = 16/213 (7%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY-YSKL 72 L+ R+ + + P S+ +P Q ++ A+AF I ++ F ++ +Q + + Sbjct: 13 LVFVRMSAFFVTAPFFSIRGVPNQFKI--ALAFIIAVISF--QSLPVQGEIPMDLTFVMY 68 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E +G + G + + + +Q G ++ +GL + + + I+ Sbjct: 69 VIKEALVGVILGYICEMMFIAIQVAGGLMDMQMGLAMANVIDPKTGAYIPVTGNFKNILA 128 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPI-------GQELNFGNIFSSFVNMLQTTFMIMLRL 185 +L + ID HH + ++ SY IP+ G E +F+ M + FMI Sbjct: 129 VLYFFSIDGHHMLIRGVISSYQVIPVDIMWAAFGSENVMMTAVKTFLTMFTSAFMI---- 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++P + + ++S+G++ K VPQ I+ + P Sbjct: 185 AAPIVVALFLVDLSLGIIAKSVPQFNIFVVGLP 217 >gi|21231362|ref|NP_637279.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768585|ref|YP_243347.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991604|ref|YP_001903614.1| hypothetical protein xccb100_2210 [Xanthomonas campestris pv. campestris str. B100] gi|21113024|gb|AAM41203.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573917|gb|AAY49327.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733364|emb|CAP51565.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 263 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 29/207 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + +P + +P +VR+ ++ L P L + F A S + EL Sbjct: 27 RTGALLTAMPLIGTRAVPGRVRVMLTGTLAMALAPILPPVPEWDGFNATAVLS--IAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++R+ G ++S A GL+ +SD PL + G++A W Sbjct: 85 AVGASMGFMLRLIFEAGALAGELVSQATGLSFAQ---MSD-----PLRGVTS--GVIAQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR--- 184 + H V LV SY +PIG + ++F + T + +LR Sbjct: 135 FYIGFGLLFFAANGHLAVIALLVDSYKALPIGTAVPDA---AAFAEVAPTLLLQVLRGGL 191 Query: 185 -LSSPFLFFYIVFNISIGLLNKLVPQI 210 L+ P + + N++ G L K P + Sbjct: 192 TLALPMMVAMLAVNLAFGALAKAAPAL 218 >gi|162139929|ref|YP_339328.2| flagellar biosynthesis protein FliR [Pseudoalteromonas haloplanktis TAC125] Length = 259 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 14/233 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R+ S IM++ GL +P ++++ A+ + V +P L F N + +++V Sbjct: 21 RISSMIMVMAGLGAKNVPTRIKMGLAIVVTFVAVPML----PPATFTNLFSFEMILVVIQ 76 Query: 76 ELFLGCVHG----LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ +G G LL+ + L G +++ GL + + S+ L+ + I+ Sbjct: 77 QMLIGIAIGFASTLLLNTFVLA----GQILAMQTGLGFASVVDPSNGLSVPAVGQFYLIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L +V + H + +V S+ +PI + + V F L LS L Sbjct: 133 ATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLSLAPLT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +V N+S G++ + PQ+ I+ I P+ + G + + ++ V QF +L Sbjct: 193 AMLVINMSFGIMTRAAPQLNIFSIGFPFTLVAGLIIIWATLGNFVSQFEFQWL 245 >gi|149182521|ref|ZP_01860994.1| flagellar biosynthesis protein R [Bacillus sp. SG-1] gi|148849781|gb|EDL63958.1| flagellar biosynthesis protein R [Bacillus sp. SG-1] Length = 258 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 16/227 (7%) Query: 10 MSLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +S+FL+V RV + + LP S IP Q R+ FA + ++ + TID A Sbjct: 8 LSIFLLVFMRVSAFFVTLPLFSYRSIPAQHRVGFAGVIAWIM----YYTIDASPMPIDAA 63 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNL----QTSMGISDSLAETPL 124 Y L+M E +G + G + +Q GS I +G + G L L Sbjct: 64 YILLIMKEAMIGLLIGFTAYMIISAIQVAGSFIDFQMGFAIANVIDPQTGAQSPLVGQYL 123 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGN--IFSSFVNMLQTTFMI 181 + ++ L VFY SY IP+ Q + FGN + V + F+I Sbjct: 124 YTFALLLLLALDGHHLLLDGVFY----SYQFIPVDQPWIPFGNENLVEYIVKTFNSVFII 179 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 ++S P + + ++++G++ + VPQ+ ++ + P I + L L Sbjct: 180 AFQMSIPVVATLFLVDVALGIVARTVPQLNVFVVGFPIKIAVSFLVL 226 >gi|302874605|ref|YP_003843238.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans 743B] gi|307690784|ref|ZP_07633230.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium cellulovorans 743B] gi|302577462|gb|ADL51474.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans 743B] Length = 607 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 11/239 (4%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++L LI R+ + PG+ + P ++ + + ++LP I+ Sbjct: 8 VALILITLRLAGMFIAAPGILPTGTPNILKAVLILILAYMVLP----VINYSGASALTEP 63 Query: 70 SKLV---MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +KL+ + E G G +I ++ + + GS+I +G ++ T + + T L Sbjct: 64 TKLIIQCLNEFSTGLAVGFIINLFFIAARIAGSIIDMQVGFSMVTLFDPTANSTATYLER 123 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 +I ++ ++ID HH V A + +Y + IG + + + I ++++ Sbjct: 124 FFNLIAIMIFFIIDGHHYVIKAFIATYDKVSIGVFFLDQGTLQEILKLFGHFYAIGVKIA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLSIEIIVYQFSHSF 243 P + +V ++ +G+L++ +PQ+ I + P LIG G L +S V ++SF Sbjct: 184 LPIILVILVADVLMGVLSRTMPQLNIMILGMPVKLLIGFG--ILAVSAPFFVRLITNSF 240 >gi|121997284|ref|YP_001002071.1| flagellar biosynthetic protein FliR [Halorhodospira halophila SL1] gi|121588689|gb|ABM61269.1| flagellar biosynthetic protein FliR [Halorhodospira halophila SL1] Length = 263 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/211 (18%), Positives = 95/211 (45%), Gaps = 2/211 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ ++ P +P+QVR+ +A +I +LP + + + + + E+ Sbjct: 21 RIGAAALVAPVFGNDMVPLQVRVFIGVALTIAVLPAVGEVPPVDPLSPDGLL--IAVQEI 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G+++ + G I+ A+GL T + ++ ++ L+ I L Sbjct: 79 LVGLTIGMVLALALNTAVIAGESIALAMGLGFATMVDPQTGMSVPVISQLLLTIVTLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + H + L S+ +PIG+ + ++F + + ++ P + +V N Sbjct: 139 AVGGHLMLIQLLADSFSAVPIGEIVLDRDVFWGVAAWGTQMYAGAVLIALPLVTVLLVIN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 +S+G++ + PQ+ ++ + P I +G + + Sbjct: 199 LSLGVMTRAAPQMNVFSVGLPLTILVGGVLM 229 >gi|120598262|ref|YP_962836.1| flagellar biosynthesis protein FliR [Shewanella sp. W3-18-1] gi|146293660|ref|YP_001184084.1| flagellar biosynthesis protein FliR [Shewanella putrefaciens CN-32] gi|120558355|gb|ABM24282.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1] gi|145565350|gb|ABP76285.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32] gi|319427059|gb|ADV55133.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens 200] Length = 265 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 110/235 (46%), Gaps = 24/235 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 RV S +M++ + P +VRL AMA + + P L + F A + ++ +++ Sbjct: 21 RVASMLMVMVVFGAATTPARVRLLLAMAITFAIAPVLPPVENADLFSLSAVFITAQQIII 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V ++++ + L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVSQMVMQTFVL----TGQII------GMQTSLGFASMVDPGSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT---TFMIMLRLS 186 ++ L +D H + LV S+ T+PI N G +S+ ++ + F L +S Sbjct: 131 LLATLIFLAVDGHLLMIRMLVASFETLPIS---NQGLTLTSYRSLAEWGSYMFGAALTMS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F Sbjct: 188 ISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFDE 242 >gi|89897881|ref|YP_514991.1| type III secretion flagellar biosynthesis inner membrane protein [Chlamydophila felis Fe/C-56] gi|89331253|dbj|BAE80846.1| type III secretion flagellar biosynthesis inner membrane protein [Chlamydophila felis Fe/C-56] Length = 289 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/224 (19%), Positives = 105/224 (46%), Gaps = 7/224 (3%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 ++P L P +++ A+++ ++ P + + + N+++ + L++ EL +G + G Sbjct: 45 IVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHIANYLDDDIFYFLIIKELCIGTLIG 104 Query: 85 LLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 ++ Q GS I+ G+ L+ + + +P +A W+ H Sbjct: 105 FILAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIAFWLSGGHR 164 Query: 144 QVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 V L+++ IPI + L ++ + + M Q ++ ++LS+P ++ + Sbjct: 165 IVLTILLQTLEVIPIHKFLPAEMMSLDAPVWIALIKMCQLCLVMTIQLSAPAAVAMLMSD 224 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + +G++N++ PQ+ + ++ + +G LF+ L+ IV Q + Sbjct: 225 LFLGIINRMAPQVQVIYLLSALKAFMGLLFITLAWWFIVKQIDY 268 >gi|218887106|ref|YP_002436427.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758060|gb|ACL08959.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 264 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/236 (22%), Positives = 110/236 (46%), Gaps = 13/236 (5%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M+S L RV + LLP P QV+ + F++ L W + L + Sbjct: 11 MLSFLLTFMRVSLVLFLLPFFGGEAAPTQVKAALCLVFTLAL----WPHVSLPGGQMPTH 66 Query: 69 YSKLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL--AETP 123 L+++ EL +G + G+ + G+Q G V++T +G + T ++D L A Sbjct: 67 PFSLIVLLAGELIMGLMLGMTVHFLFAGIQTGGQVLATQMGFTMIT---LADPLTGANVS 123 Query: 124 LNS-LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 + S + ++ +L+ V+D H + A V+++ +P G L + + + + F++ Sbjct: 124 ITSHFLYMVAMLSFLVLDGHLYMLRAFVRTFELVPAGGLLLTPMLVKEVLALSGSMFVLA 183 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 +++++P L + +++ L+ + PQ+ + I P I +G F+ + I+ + Sbjct: 184 VKIAAPVLVSLFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFIGMLFTIMADK 239 >gi|77457778|ref|YP_347283.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens Pf0-1] gi|77381781|gb|ABA73294.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens Pf0-1] Length = 261 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 105/228 (46%), Gaps = 13/228 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 RV S +M++P + +P ++RL FA A ++V+ P L +DL + L Sbjct: 25 RVASMLMVMPVFGTTLVPRRIRLYFAFAITVVITPNLPPMPAVSPLDLSGLL-------L 77 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G V G ++++ G +++ +G+ + + ++ ++ + ++ Sbjct: 78 IAEQILVGAVLGFSLQLFFQAFVVAGQIVAIQMGMGFASMIDPTNGVSVAVIGQFFTMLV 137 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L ++ H VF L +S+ T+P+G L + + L L L P + Sbjct: 138 TLLFLSMNGHLVVFEVLTESFTTLPVGGGLMTTH-YWELAGKLGWVLGAALLLVLPAVTA 196 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +V NI+ G++ + PQ+ I+ I P + LG + + + I+ Q+ Sbjct: 197 LLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGLFIVWVGLADILNQYQ 244 >gi|15606960|ref|NP_214342.1| flagellar biosynthetic protein FliR [Aquifex aeolicus VF5] gi|6225369|sp|O67773|FLIR_AQUAE RecName: Full=Flagellar biosynthetic protein fliR gi|2984202|gb|AAC07732.1| flagellar biosynthetic protein FliR [Aquifex aeolicus VF5] Length = 258 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 17/224 (7%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDL 60 ++ E +++L L R+ S + P IP +RL A A S +L F+ T + + Sbjct: 3 KVTSEEFLITLLLSYFRIVSFLFTFPFYGSFLIPNTIRLYLAFALSFAVLSFINITPVKV 62 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN-LQTSM-GISDS 118 FV Y+ + EL G GL++R+ L G +I+ GL LQ + G++ Sbjct: 63 NTFVEFLVYA---LNELLFGFSAGLILRLLFDALIIAGELIALHTGLGFLQMFIPGMTQM 119 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF----SSFVNM 174 + +L G + L+L +F + L +S+ +P+G NIF F+N Sbjct: 120 SLFSGFFTLYGTLIFLSLGGGEF---IILGLAESFKRLPVGSF----NIFYLNPEVFLNF 172 Query: 175 LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +F + ++++ P + ++ N+ + ++N+ +PQ+ ++ + P Sbjct: 173 FYESFRLGVKIAMPLILTALILNLVLAVVNRFIPQMNVFMVGLP 216 >gi|73539699|ref|YP_300066.1| flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134] gi|72123036|gb|AAZ65222.1| Flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134] Length = 261 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 10/203 (4%) Query: 32 SYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK----LVMVELFLGCVHGLLI 87 S IP +V++ A ++V+ P L N YS +++ E+ +G G + Sbjct: 36 STIPGRVKVGLAALTAMVVSP------TLGNLPVVPVYSWQGLIIILNEVGIGLATGFTM 89 Query: 88 RVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFY 147 R+ +Q G +I +GL + + L + II +L +D H + Sbjct: 90 RLVFAIVQQAGEIIGMQMGLGFASFFDRAAGGQTMVLARFLNIIAVLLFLAMDGHLLMLG 149 Query: 148 ALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 ALV S+ +PIG G + + F L L+ P + + N+++G+LN+ Sbjct: 150 ALVDSFQGLPIGATPVSGEGWHAVARAGGMVFSSGLLLALPMIAALLTLNLAMGILNRAS 209 Query: 208 PQIPIYFISTPYLIGLGSLFLCL 230 PQ+ I+ + P + G L L L Sbjct: 210 PQLSIFAVGFPVTLSGGLLVLAL 232 >gi|194365645|ref|YP_002028255.1| flagellar biosynthetic protein FliR [Stenotrophomonas maltophilia R551-3] gi|194348449|gb|ACF51572.1| flagellar biosynthetic protein FliR [Stenotrophomonas maltophilia R551-3] Length = 263 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 23/204 (11%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ M +P + +P +VR+ A +I L P L D F A + EL Sbjct: 27 RIGAVAMAMPMVGTRAVPARVRVVLAGTLAIALAPLLPPVPDWTGF--DAATVLTIAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G L+R+ G +I+ GL +SD PL G G++ W Sbjct: 85 AIGVSIGFLLRLVFEAGAMAGELIAQGTGLAFAQ---MSD-----PLRG--GTSGVIGQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLS 186 + H + +V SY +PIG L + F S L T L L+ Sbjct: 135 FYLLFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTLA 194 Query: 187 SPFLFFYIVFNISIGLLNKLVPQI 210 P + N++ G+L + P + Sbjct: 195 IPLTVAMLAVNLAFGVLARAAPAL 218 >gi|150019066|ref|YP_001311320.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium beijerinckii NCIMB 8052] gi|149905531|gb|ABR36364.1| flagellar biosynthetic protein FlhB [Clostridium beijerinckii NCIMB 8052] Length = 613 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 4/146 (2%) Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 +M L LG + L+ +V ++ G + G ++ + + + T L +L I Sbjct: 74 IMSGLILGYITNLIFQV----VKLAGEWMDIHAGFSMVSVLDPTTQTTSTLLGNLSYFIS 129 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L +++D HH V LV+S IPIG+ + + + + F + ++++ P + Sbjct: 130 LAFFFIVDGHHVVINMLVESTKIIPIGKTIVYQETLMEVMKTIFDYFTLGVKIAIPIVLI 189 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP 218 ++ ++ +GL+++ VP IPI + P Sbjct: 190 IVITDVCLGLISRTVPTIPIMILGMP 215 >gi|109946963|ref|YP_664191.1| flagellar biosynthesis protein FliR [Helicobacter acinonychis str. Sheeba] gi|109714184|emb|CAJ99192.1| flagellar biosynthesis protein [Helicobacter acinonychis str. Sheeba] Length = 255 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 13/237 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N Y Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNATYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-N 125 + + ELFLG + +++ L F IS ++GL + S+ S A+ P+ Sbjct: 68 ESFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTM-ASVYDPISGAQKPIVG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I + Sbjct: 127 QALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFIIGFSM 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + P L ++ +I G++ K PQ + I P I +G + + L + I+ +F Sbjct: 187 AFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRFKDE 243 >gi|134300233|ref|YP_001113729.1| flagellar biosynthesis protein FliR [Desulfotomaculum reducens MI-1] gi|134052933|gb|ABO50904.1| flagellar biosynthetic protein FliR [Desulfotomaculum reducens MI-1] Length = 255 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 54/105 (51%) Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 +D HH + ALVKSY +P+ G + + + TF + +++ +P + ++ ++ Sbjct: 136 MDGHHALIRALVKSYELVPLTAAAMNGELTLLIIRIFTDTFALAVQICAPVVAVLVITDL 195 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++GL+ K PQ+ I+ + P I +G L + + + F + F Sbjct: 196 AMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLF 240 >gi|331671780|ref|ZP_08372576.1| flagellar biosynthetic protein FliR [Escherichia coli TA280] gi|331070769|gb|EGI42128.1| flagellar biosynthetic protein FliR [Escherichia coli TA280] Length = 277 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 21/216 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D + L + + L Sbjct: 39 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 91 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 92 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 151 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 152 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 207 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGL 223 F ++ GLLN++ P + ++ + P L+GL Sbjct: 208 TFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGL 243 >gi|307824491|ref|ZP_07654716.1| flagellar biosynthetic protein FliR [Methylobacter tundripaludum SV96] gi|307734475|gb|EFO05327.1| flagellar biosynthetic protein FliR [Methylobacter tundripaludum SV96] Length = 238 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/225 (21%), Positives = 107/225 (47%), Gaps = 6/225 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + + +P S+ +P +VRL ++ ++V++P L ++ F + + + ++ Sbjct: 2 RISAMFVAVPLFSIKAVPARVRLILSVVITLVVMPLLPPLPSVEMFSYAGFMTAIA--QV 59 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGIIGLLAL 136 +G G ++++ F G ++ ++GL + M S + P + L + L Sbjct: 60 MIGLTTGFILQLVFAAAVFAGQSVALSMGLGF-SMMVDPQSGQQVPVIAQLYTVTTTLIF 118 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 +D H + L+ S+ T+PIG + ++ I+S + F L L+ P + ++ Sbjct: 119 ISLDGHLLLIQMLLDSFKTLPIGIDGIDKAGIWS-IIAWSSRMFAGGLLLTMPIIASLLL 177 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 NI G+ + PQ+ I+ + P + LG L + ++ ++ QFS Sbjct: 178 VNIIFGVAARAAPQLQIFSVGIPVTLMLGLLLIWKTLPDVLDQFS 222 >gi|300936101|ref|ZP_07151042.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1] gi|300458750|gb|EFK22243.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1] Length = 260 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 102/219 (46%), Gaps = 19/219 (8%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQN 62 +++ L+ R+ + + +P L S + ++VR+ ++A +I++ P + D + L + Sbjct: 12 LVLGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 + L + ++ G + GL+ + L LQ G ++S +G+++ S + T Sbjct: 72 LI-------LTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTT 124 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTF 179 L LI + +L + +D H + L K + PIG L+ I +F +L + Sbjct: 125 VLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASAS 184 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++ L P F ++ GLLN++ P + ++ + P Sbjct: 185 LLAL----PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|331640692|ref|ZP_08341839.1| flagellar biosynthetic protein FliR [Escherichia coli H736] gi|331040066|gb|EGI12274.1| flagellar biosynthetic protein FliR [Escherichia coli H736] Length = 277 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D + L + + L Sbjct: 39 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 91 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 92 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 151 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 152 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 207 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 208 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 236 >gi|306813327|ref|ZP_07447520.1| flagellar biosynthetic protein FliR [Escherichia coli NC101] gi|305854090|gb|EFM54529.1| flagellar biosynthetic protein FliR [Escherichia coli NC101] Length = 260 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 96/209 (45%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + +VR+ ++A +I++ P + D + L + + L Sbjct: 22 RIMAFLRYMPVLDNSALTARVRIILSLALAIIITPLIPHPVPHDLLSLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|255323533|ref|ZP_05364664.1| flagellar biosynthetic protein FliR [Campylobacter showae RM3277] gi|255299570|gb|EET78856.1| flagellar biosynthetic protein FliR [Campylobacter showae RM3277] Length = 253 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 16/226 (7%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 +PE ++ + L+ R+G ++ P IPM V+ AFS +L FL+ ++N Sbjct: 8 APERVI-TFMLLFARIGGLMLFFPFYGHEQIPMSVK----TAFSFLLTLFLFPLASIKN- 61 Query: 64 VNRAYYSKLVMV-ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 YY + +V E LG GLL+ + LQ G IS +G ++ + + L+ Sbjct: 62 -GEIYYLAVEIVSEAALGVCAGLLLHIVFASLQLAGEQISMIMGFSMASVLDPQTGLSSP 120 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF----SSFVNMLQTT 178 ++++I + L+ D HH + + S +P+G +I S +N+ Sbjct: 121 VISNIINFLALMTFLAFDGHHLILLFISNSLTHVPLGGFYPSPDIVQYASKSMINLFTFG 180 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 F+I S P L ++ ++ G+L K +PQ + + P I +G Sbjct: 181 FII----SFPILALSLLSDLIFGMLMKTMPQFNLLVVGYPIKITIG 222 >gi|254445194|ref|ZP_05058670.1| Bacterial export protein, family 1 [Verrucomicrobiae bacterium DG1235] gi|198259502|gb|EDY83810.1| Bacterial export protein, family 1 [Verrucomicrobiae bacterium DG1235] Length = 256 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 109/231 (47%), Gaps = 16/231 (6%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ RV + P S IP+ ++ A AF++++ P +D N A L Sbjct: 12 LILTRVLGLFLAAPVFSHKSIPVIAKVTLAAAFAMMVFPM----VD-HEVANPASIWSLT 66 Query: 74 M---VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE-TPLNSLIG 129 + EL +G + G+ IR+ L F VI+ IGL + S ++ PL ++I Sbjct: 67 LWFAKELTVGLMMGIAIRMVFFVLDFASHVITVEIGLQPGPAFDPGSSSSQGNPLGTII- 125 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTT--FMIMLRLS 186 L L + + + A ++S+ PIG FG N F++ +L+T F I + + Sbjct: 126 YFLGLMLLLSGSEYNMLRAFMRSFEIAPIG---FFGLNSFAADFIILKTADIFRIGILMG 182 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 +P + + N+ L K+VP++ ++ +S I LG+ L L++ ++ + Sbjct: 183 APIVAVNFLVNLVFATLGKVVPKLNVFILSFSARIFLGTTVLTLTVGLLAH 233 >gi|208434126|ref|YP_002265792.1| flagellar biosynthetic protein [Helicobacter pylori G27] gi|208432055|gb|ACI26926.1| flagellar biosynthetic protein [Helicobacter pylori G27] Length = 255 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F + AY Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSSAAYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPKLAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|218703504|ref|YP_002411023.1| Flagellar biosynthetic protein fliR [Escherichia coli UMN026] gi|293403335|ref|ZP_06647426.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298378946|ref|ZP_06988827.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302] gi|300898062|ref|ZP_07116431.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1] gi|59889760|emb|CAH19115.1| Lateral flagellar export/assembly protein (FliR-like) [Escherichia coli] gi|218430601|emb|CAR11467.1| Flagellar biosynthetic protein fliR [Escherichia coli UMN026] gi|284920024|emb|CBG33080.1| flagellar biosynthetic protein [Escherichia coli 042] gi|291429188|gb|EFF02208.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280059|gb|EFI21563.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302] gi|300358240|gb|EFJ74110.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1] Length = 260 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 21/216 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D + L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGL 223 F ++ GLLN++ P + ++ + P L+GL Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGL 226 >gi|90021815|ref|YP_527642.1| flagellar biosynthetic protein FliR [Saccharophagus degradans 2-40] gi|89951415|gb|ABD81430.1| flagellar biosynthetic protein FliR [Saccharophagus degradans 2-40] Length = 261 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 106/246 (43%), Gaps = 12/246 (4%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-----TIDLQ 61 +++ FL CR+G+ + +P L + +VRL A +++++P L + +Q Sbjct: 13 LLLQQYFLPFCRIGAMFLAMPILGSQLVSPRVRLGLAFIVTLMVVPMLGSIPKVSGLSVQ 72 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 F+ Y S+ E+ LG G +V G +I+ +GL + + + Sbjct: 73 TFI---YISQ----EILLGLAAGYCFQVAFQVFVLAGQLIAMKMGLGFASMNDPVNGVQT 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 T ++ ++ L ++ H + LV+S+ T P G + N N+ F Sbjct: 126 TAISQFYLMLVTLMFVSVNGHLVMINMLVESFVTFPPGGFIFSTNTMWKIANVGTWLFAA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L ++ P L + NI+ G++++ PQ+ I+ I P+ + G L + L + F Sbjct: 186 GLLMALPVLTALLFINIAFGIMSRAAPQLNIFAIGFPFTLLCGLLMIWLGLVTFDSNFES 245 Query: 242 SFLYGF 247 GF Sbjct: 246 VMDDGF 251 >gi|317179432|dbj|BAJ57220.1| flagellar biosynthesis protein FliR [Helicobacter pylori F30] Length = 255 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N Y Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNATYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+GQ + + + + F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|293408346|ref|ZP_06652185.1| flagellar biosynthetic protein FliR [Escherichia coli B354] gi|291471524|gb|EFF14007.1| flagellar biosynthetic protein FliR [Escherichia coli B354] Length = 260 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 102/219 (46%), Gaps = 19/219 (8%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQN 62 +++ L+ R+ + + +P L S + ++VR+ ++A +I++ P + D + L + Sbjct: 12 LVLGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 + L + ++ G + GL+ + L LQ G ++S +G+++ S + T Sbjct: 72 LI-------LTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTT 124 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTF 179 L LI + +L + +D H + L K + PIG L+ I +F +L + Sbjct: 125 VLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIELAFSWVLASAS 184 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++ L P F ++ GLLN++ P + ++ + P Sbjct: 185 LLAL----PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|289678969|ref|ZP_06499859.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae FF5] Length = 199 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 1/169 (0%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + ++ Sbjct: 15 LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTML 74 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L ++ H V LV+S+ T+P+G L N F N L LRL P + Sbjct: 75 VTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWALASGLRLVLPAIT 133 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+ Sbjct: 134 ALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQYQ 182 >gi|160902842|ref|YP_001568423.1| flagellar biosynthetic protein FliR [Petrotoga mobilis SJ95] gi|160360486|gb|ABX32100.1| flagellar biosynthetic protein FliR [Petrotoga mobilis SJ95] Length = 257 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 13/236 (5%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F I RV +P S +++P+ +++ + S ++L + T + + S L Sbjct: 14 FFIFARVAGITFFIPFFSTTFVPVHIKVFITLFISYLVLFEVNGTFPINS-------SPL 66 Query: 73 VMV-----ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V++ G GL+ + QF G I +G + S + ++ L Sbjct: 67 VIIFYLLMNFVFGSSVGLIANILFYAFQFAGETIGIQMGFAMANVFDPVTSDEVSLVSEL 126 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L ++ ++ ++ S+ +P+ L + F F L F I L+LS Sbjct: 127 SFLFSMLLFFIFKGPLILYSIIIDSFNKVPVVFTLA-PDGFMVFSQKLFDVFTIGLQLSM 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 PF+ F I+ +++G++++L+PQ+ ++ + P I +G L I I QF+ F Sbjct: 186 PFIAFMILLKVALGIVSRLIPQVNVFMVGIPLEILVGFLLFLGVILIWEDQFTTLF 241 >gi|301646789|ref|ZP_07246643.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1] gi|307136836|ref|ZP_07496192.1| flagellar biosynthetic protein FliR [Escherichia coli H736] gi|301075024|gb|EFK89830.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1] gi|315616849|gb|EFU97466.1| flagellar biosynthetic protein FliR [Escherichia coli 3431] Length = 260 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D + L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|310641561|ref|YP_003946319.1| flagellar biosynthetic protein flir [Paenibacillus polymyxa SC2] gi|309246511|gb|ADO56078.1| Flagellar biosynthetic protein fliR [Paenibacillus polymyxa SC2] Length = 215 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 10/190 (5%) Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL- 119 Q Y LV E+ +G + G ++ +Q GS I +G + + + D + Sbjct: 11 QQVPTDVAYVLLVGREVLIGLLLGFTAYLFMTAIQTAGSFIDLQVGFGMAS---VFDPMT 67 Query: 120 -AETPLNSLIGI-IGLLALWVIDFHHQVFYALVKSYGTIPIGQE----LNFGNIFSSFVN 173 A TPL I +L I+ HH + A++ SY +P+ + L G++ V Sbjct: 68 GASTPLTGNFKFAIAVLFFLSINGHHHLLNAILYSYDWVPLTNDFFIKLYGGSVTEFLVR 127 Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 +FM+ ++++P + + ++ +G L K PQ I+ I P I +G L L + Sbjct: 128 SFAESFMLAFQIAAPIVVATFLTDVGLGFLAKTAPQFNIFVIGVPLKIIVGLFMLLLLMP 187 Query: 234 IIVYQFSHSF 243 + F F Sbjct: 188 SFAFIFERLF 197 >gi|170683764|ref|YP_001742350.1| lateral flagellar export/assembly protein LfiR [Escherichia coli SMS-3-5] gi|170521482|gb|ACB19660.1| lateral flagellar export/assembly protein LfiR [Escherichia coli SMS-3-5] Length = 260 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D + L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|305431791|ref|ZP_07400958.1| flagellar biosynthetic protein FliR [Campylobacter coli JV20] gi|304444875|gb|EFM37521.1| flagellar biosynthetic protein FliR [Campylobacter coli JV20] Length = 255 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 8/213 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFVNRAYYSKL 72 L+ R+ I+ P S + IPM ++ FA+ ++ L P + + L +F S++ Sbjct: 17 LLFARMSGLIVFFPFFSHNSIPMIIKTTFALFLTMYLFPLAKLEILHLDSFFIIQLLSEI 76 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V G + GL++++ + G I+ +G + + + S + ++ +I Sbjct: 77 V-----FGMIAGLMLQIVFAIVMMAGEQIAFTMGFTMASVLDPSSGTNMPITSQILHLIA 131 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLF 191 LL D HH + L S G I +G N+ ++NM + F+I +S P L Sbjct: 132 LLFFLAFDGHHLMLLFLSHSLGYINLGGFYPHENLMH-YLNMGMLNIFIIGFTMSFPILG 190 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ + GLL K +PQ + I P I LG Sbjct: 191 ISLLADTIFGLLMKTMPQFNLLVIGYPIKIALG 223 >gi|269302613|gb|ACZ32713.1| bacterial export protein, fliR/mopE/spaR family [Chlamydophila pneumoniae LPCoLN] Length = 289 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 42/222 (18%), Positives = 103/222 (46%), Gaps = 7/222 (3%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P L P +++ +++ ++ P + + N+++ + L++ E+ +G V G + Sbjct: 47 PFLGAKLFPSPIKIGIGLSWLAIIFPKVLADTQITNYMDNNLFYVLLVKEMIIGIVIGFV 106 Query: 87 IRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQV 145 + Q GS I+ G+ L+ + + +P L + W++ H V Sbjct: 107 LAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGILYHYFVTIVFWLVGGHRIV 166 Query: 146 FYALVKSYGTIPI-----GQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199 L+++ IPI + ++ I+ + + M Q ++ ++LS+P ++ ++ Sbjct: 167 ISLLLQTLEVIPIHSFFPAEMMSLSAPIWITMIKMCQLCLVMTIQLSAPAALAMLMSDLF 226 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + Sbjct: 227 LGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDY 268 >gi|326204608|ref|ZP_08194464.1| flagellar biosynthetic protein FliR [Clostridium papyrosolvens DSM 2782] gi|325985175|gb|EGD46015.1| flagellar biosynthetic protein FliR [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/229 (20%), Positives = 103/229 (44%), Gaps = 11/229 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFA-----MAFSIVLLPFLWDTIDLQNFVNRAY 68 LI R+ + P IP+ ++ FA +A S++ + + +T NF+ A Sbjct: 17 LIFVRMTGLFVTAPIFGRRNIPVYFKVGFAFITAILASSVIKVDHIINT---DNFLIFAL 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y ++ E +G + G + + G +I IG + ++ +L Sbjct: 74 Y---ILKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPMSNIQIPVTANLY 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ ++ V + HH + AL +S+ +P+G + + ++ F + ++++P Sbjct: 131 FILAMIIFLVTNGHHMLIKALFESFQLVPLGSGVIGPKFTDDVIGLISGVFSMGFKIAAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + + ++ +G+++K +PQ+ ++ + P I LG L + ++I VY Sbjct: 191 VVAAIFITDVVLGIISKTIPQMNVFILGMPLKIFLGILIVMITIPAFVY 239 >gi|190574227|ref|YP_001972072.1| putative flagellar biosynthetic protein [Stenotrophomonas maltophilia K279a] gi|190012149|emb|CAQ45772.1| putative flagellar biosynthetic protein [Stenotrophomonas maltophilia K279a] Length = 257 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 23/204 (11%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ M +P + +P ++R+ A +I L P L D F A + EL Sbjct: 21 RIGAVAMAMPMVGTRAVPARIRVILAGTLAIALAPLLPPVPDWTGF--DAATVLTIAREL 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G L+R+ G +I+ GL +SD PL G G++ W Sbjct: 79 AIGVSIGFLLRLVFEAGAMAGELIAQGTGLAFAQ---MSD-----PLRG--GTSGVIGQW 128 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLS 186 + H + +V SY +PIG L + F S L T L L+ Sbjct: 129 FYLLFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQI 210 P + N++ G+L + P + Sbjct: 189 IPLTVAMLAVNLAFGVLARAAPAL 212 >gi|170021381|ref|YP_001726335.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739] gi|169756309|gb|ACA79008.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739] Length = 260 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D + L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLFKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|117919802|ref|YP_868994.1| flagellar biosynthesis protein FliR [Shewanella sp. ANA-3] gi|117612134|gb|ABK47588.1| flagellar biosynthetic protein FliR [Shewanella sp. ANA-3] Length = 265 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 24/235 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 RV S +M++ + P +VRL A+ ++ + P L D + F A + ++ +++ Sbjct: 21 RVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPVKDAELFSLSAVFITAQQIII 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V ++++ + L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVTQMVMQTFVL----TGQII------GMQTSLGFASMVDPGSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT---TFMIMLRLS 186 ++ L +D H + LV S+ T+PI N G +S+ ++ + F L +S Sbjct: 131 LLATLIFLAVDGHLLMIRMLVASFETLPIS---NQGLTLTSYRSLAEWGSYMFGAALTMS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F Sbjct: 188 LSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEE 242 >gi|157692317|ref|YP_001486779.1| flagellar biosynthesis protein FliR [Bacillus pumilus SAFR-032] gi|157681075|gb|ABV62219.1| flagellar biosynthesis protein FliR [Bacillus pumilus SAFR-032] Length = 259 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 110/234 (47%), Gaps = 18/234 (7%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAM-----AFSIVLLPFLWDTIDLQNFVN 65 + L+ R+ + + +P L+ IP R+ F++ +FS + P D ID Sbjct: 9 AFLLVFIRITAFFVTVPLLAHRTIPAVHRVGFSLFLAVISFSTIKEPPALD-ID------ 61 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL- 124 Y L + E +G + GL+ + +Q GS I +G + + + A+TPL Sbjct: 62 -GLYMMLAVKEAMVGLLLGLIAYIMVSAVQIAGSFIDFQMGFAIANVID-PQTGAQTPLM 119 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGN-IFSSFV-NMLQTTFMI 181 + LL + + HH + + S+ I + Q LNFG+ F+ F+ F+I Sbjct: 120 GQFFYTVTLLLMLATNAHHLLLDGIYYSFQYIAVDQYALNFGSESFAYFIAKSFNQMFII 179 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++S+P + + ++++G++ + VPQ+ ++ + P +G+ + + + + +I Sbjct: 180 AFQISAPVVASLFLVDLALGIVARTVPQMNVFVVGLPIKMGVSFIMIIICMGVI 233 >gi|261407966|ref|YP_003244207.1| flagellar biosynthetic protein FliR [Paenibacillus sp. Y412MC10] gi|261284429|gb|ACX66400.1| flagellar biosynthetic protein FliR [Paenibacillus sp. Y412MC10] Length = 262 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/205 (20%), Positives = 95/205 (46%), Gaps = 9/205 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFS-IVLLPFLWDTIDLQNFVNRAYYSKL 72 LI CR+ S ++ P + IP ++ + + IV L F + Q+ Y+ L Sbjct: 13 LIFCRITSFFVISPVFASRGIPSSYKIALSAIIALIVYLSFGLGEVVPQDLS----YAIL 68 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E+ +G + G + +Q G++I IG ++ + + + + + Sbjct: 69 IVQEVLVGLLLGFTAYLIMAVVQTAGALIDIQIGFSMANVIDPFTGTSTPLIGNFKYYLA 128 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQE----LNFGNIFSSFVNMLQTTFMIMLRLSSP 188 LL ++ HH +F A++ SY IPI + ++ GN+ V +F++ +++++P Sbjct: 129 LLVFLSMNGHHYLFDAIMYSYDWIPITGDVFGKIHEGNVTDFLVRTFSHSFVLAIQMAAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIY 213 + + ++ +G L + PQ ++ Sbjct: 189 LVAALFLTDVGLGFLARTAPQFNVF 213 >gi|327254529|gb|EGE66145.1| flagellar biosynthetic protein FliR [Escherichia coli STEC_7v] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D + L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLIFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|78485087|ref|YP_391012.1| flagellar biosynthetic protein FliR [Thiomicrospira crunogena XCL-2] gi|78363373|gb|ABB41338.1| flagellar biosynthetic protein FliR [Thiomicrospira crunogena XCL-2] Length = 247 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 32/222 (14%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRL------CFAMAFSIVLLP----FLWDTIDLQNFVNRA 67 R+ ++++P LS SY+PM VRL FA+A S+ L P F W I Sbjct: 10 RISGMLLMVPILSGSYVPMNVRLLLAVFITFAVAPSLALPPPVDPFTWHGI--------- 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ +L +G GL+ + G + S ++GL + + + + + + Sbjct: 61 ---LLIVQQLGIGVAIGLIFALIFQAFVIAGHLASMSMGLAMASMVDPATGVNTPIIGRY 117 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIG----QELNFGNIFSSFVNMLQTTFMIML 183 II L +++ H VF A+++S+ T+PIG + + I+ M ++ I L Sbjct: 118 FTIIATLLFLLMNGHVLVFKAVLQSFETLPIGLHFFTQDSLKLIYGFGSQMFESGVTIAL 177 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGL 223 L + L + NI+ G++ + P + I+ + P L+GL Sbjct: 178 PLVTALL----LVNIAFGVVARAAPALNIFAVGFPVTLLVGL 215 >gi|86150314|ref|ZP_01068540.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596317|ref|ZP_01099554.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 84-25] gi|218562791|ref|YP_002344570.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839139|gb|EAQ56402.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191158|gb|EAQ95130.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 84-25] gi|112360497|emb|CAL35294.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926403|gb|ADC28755.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni IA3902] gi|315926597|gb|EFV05978.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 255 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/212 (22%), Positives = 98/212 (46%), Gaps = 6/212 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+G I+ P S + IPM ++ + ++ L P L++ +++ + Sbjct: 17 LLLARMGGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPL----ARLESLHLDSFFVLQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + GL++++ + G I+ +G + + + S + + ++ ++ L Sbjct: 73 ISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQILNLLAL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFF 192 + D HH + L S G I +G N+ ++NM + F+I +S P L Sbjct: 133 MFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMH-YLNMGMFNIFIIGFTMSFPILGI 191 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ GLL K +PQ + I P I LG Sbjct: 192 SLLADVIFGLLMKTMPQFNLLVIGYPIKIALG 223 >gi|94500292|ref|ZP_01306825.1| flagellar biosynthesis protein [Oceanobacter sp. RED65] gi|94427591|gb|EAT12568.1| flagellar biosynthesis protein [Oceanobacter sp. RED65] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 107/229 (46%), Gaps = 32/229 (13%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R M+LP + +VRL A SI++ P L D + +Q V ++ Sbjct: 29 RFAGFFMVLPLFGTRLVTARVRLFLAFFTSILVTPLLPPMPVIDAVSVQTMV---IIAQQ 85 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 +++ + LG V +L++++ L G +I+ +QT +G++ + P N + + Sbjct: 86 ILIGIALGFVVEILMQIFIL----CGQLIA------MQTGLGMA--MMVDPTNGVN--VA 131 Query: 133 LLALWVIDFHHQVFYAL----------VKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 ++A W + F + +F L S+ TIP+G+ N+ S V + F Sbjct: 132 VVAQWFLIFANLLFITLNGHLVAIEILADSFFTIPVGEGTISTNVMWSIVELAHWMFSAA 191 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 + L+ P + +V NI+ G++ +L PQ+ I+ + P + LG + L ++ Sbjct: 192 IVLALPAITSMLVVNIAFGVMARLAPQLNIFAVGFPVTMLLGLIVLWIA 240 >gi|224370772|ref|YP_002604936.1| FliR [Desulfobacterium autotrophicum HRM2] gi|223693489|gb|ACN16772.1| FliR [Desulfobacterium autotrophicum HRM2] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 5/225 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ RV + +LP + P V+ AM S++L + DL A + Sbjct: 17 LVLARVSIVLFMLPIFGTTMFPTMVKAGLAMVISMLLYSVVQLDPDL--LPETAMGMGIF 74 Query: 74 MV-ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 +V E +G GL +R++ Q G VI +G ++ + + + L + Sbjct: 75 LVSEAMIGLTLGLCVRLFFGSFQLAGEVIGFQMGFSMINVVDPQSGANVSLMEQLAYWVA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT-FMIMLRLSSPFLF 191 LL ++ HH + +LV S+ + G F I V L + F++ +++ +P + Sbjct: 135 LLVFLAMNGHHIMLLSLVDSFELVQPG-SFVFQQIMVDKVIFLGSQMFILAIKIGAPVIA 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +++ GL K PQ+ + ++ P I +G + LS+EII+ Sbjct: 194 ALLFTSVAFGLTAKFSPQMNVMIVAFPLKIIVGLVLFGLSLEIII 238 >gi|317013592|gb|ADU81028.1| flagellar biosynthesis protein FliR [Helicobacter pylori Gambia94/24] Length = 255 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N Y Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNATYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+G+ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|15618732|ref|NP_225018.1| Yop proteins translocation protein T [Chlamydophila pneumoniae CWL029] gi|15836356|ref|NP_300880.1| YopT tranlocation T [Chlamydophila pneumoniae J138] gi|16752217|ref|NP_445585.1| type III secretion inner membrane protein SctT [Chlamydophila pneumoniae AR39] gi|33242183|ref|NP_877124.1| YOP proteins translocation protein T [Chlamydophila pneumoniae TW-183] gi|4377135|gb|AAD18960.1| Yop proteins translocation protein T [Chlamydophila pneumoniae CWL029] gi|6672008|dbj|BAA88641.1| YopT tranlocation protein [Chlamydophila pneumoniae] gi|8163545|gb|AAF73727.1| type III secretion inner membrane protein SctT [Chlamydophila pneumoniae AR39] gi|8979197|dbj|BAA99031.1| YopT tranlocation T [Chlamydophila pneumoniae J138] gi|33236694|gb|AAP98781.1| YOP proteins translocation protein T [Chlamydophila pneumoniae TW-183] Length = 289 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/222 (18%), Positives = 104/222 (46%), Gaps = 7/222 (3%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P L P +++ ++++ ++ P + + N+++ + L++ E+ +G V G + Sbjct: 47 PFLGAKLFPSPIKIGISLSWLAIIFPKVLADTQITNYMDNNLFYVLLVKEMIIGIVIGFV 106 Query: 87 IRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQV 145 + Q GS I+ G+ L+ + + +P L + W++ H V Sbjct: 107 LAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGILYHYFVTIIFWLVGGHRIV 166 Query: 146 FYALVKSYGTIPI-----GQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199 L+++ IPI + ++ I+ + + M Q ++ ++LS+P ++ ++ Sbjct: 167 ISLLLQTLEVIPIHSFFPAEMMSLSAPIWITMIKMCQLCLVMTIQLSAPAALAMLMSDLF 226 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + Sbjct: 227 LGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDY 268 >gi|71277858|ref|YP_268256.1| flagellar biosynthesis protein FliR [Colwellia psychrerythraea 34H] gi|71143598|gb|AAZ24071.1| flagellar biosynthetic protein FliR [Colwellia psychrerythraea 34H] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 6/225 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNR 66 M L R+ + IM + G S IP +V++ ++ +I ++P + +L + Sbjct: 12 MADFVLPFSRISALIMTMIGFSSKTIPGRVKVFLCISITIAVMPAIPPASVTNLMSLNTA 71 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + LG V +++ +TL G +I+ GL + + + + + Sbjct: 72 ILLGQQMIIGVMLGFVTIMVVNTFTLA----GQIIAMQSGLGFASLVDPASGMNVPAIGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I+ L WV+D H +V S+ T+PI E + V F L L+ Sbjct: 128 FFLILSSLLFWVMDGHLAYLQFIVASFDTLPIPTEHLSSIKYREVVEWGGWMFATALSLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 + ++ N S G++ + PQ+ I+ I P + G L + L+ Sbjct: 188 LAPITAMLLINFSFGIMTRAAPQLNIFAIGFPITMMAGLLIMWLT 232 >gi|311068159|ref|YP_003973082.1| flagellar biosynthesis protein FliR [Bacillus atrophaeus 1942] gi|310868676|gb|ADP32151.1| flagellar biosynthesis protein FliR [Bacillus atrophaeus 1942] Length = 259 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/229 (21%), Positives = 106/229 (46%), Gaps = 12/229 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN-RAYY 69 + L+ R+ + + +P +P R+ FA +++ + T+D + +Y Sbjct: 10 AFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVIC----FSTLDQAPSIEIDEHY 65 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLI 128 L + E +G GL+ + +Q GS I +G + + + A++PL I Sbjct: 66 MLLAVKETVVGLSLGLIAFIMIAAVQIAGSFIDFQMGFAIANVID-PQTGAQSPLIGQFI 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNI-FSSFV-NMLQTTFMIMLRL 185 + LL + ++ HH + + S+ I I Q FGN F+ F+ F+I ++ Sbjct: 125 YTMALLFMLSVNAHHLLLDGIYYSFQYISIDQAFPAFGNEEFAYFIAKSFNAMFIIAFQM 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSI 232 S+P + + ++++G++ + VPQ+ ++ + P I + L +C+S+ Sbjct: 185 SAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSV 233 >gi|256831233|ref|YP_003159961.1| flagellar biosynthetic protein FliR [Desulfomicrobium baculatum DSM 4028] gi|256580409|gb|ACU91545.1| flagellar biosynthetic protein FliR [Desulfomicrobium baculatum DSM 4028] Length = 259 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 76/161 (47%) Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 EL LG + G++IR +Q G +I +G + + +E + ++ LL Sbjct: 76 AELLLGLILGMVIRFVFAAIQTGGQLIGFQMGFAMVNVVDPDSGASEAVTAHFMYMVSLL 135 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 I+ H + L+KS+ +P G L + + F++ +++ +P + + Sbjct: 136 TFLSINGHLYLLSGLMKSFDLLPPGSILISPRLTDQIFALSGQIFVLAIQIGAPVIAAIL 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + ++++ L+++ PQ+ + I P I +G LFL + EII Sbjct: 196 LVDLALALISRASPQMNVLIIGFPIKISVGFLFLGIIFEII 236 >gi|167040312|ref|YP_001663297.1| flagellar biosynthesis protein FliR [Thermoanaerobacter sp. X514] gi|300914396|ref|ZP_07131712.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X561] gi|307724368|ref|YP_003904119.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X513] gi|166854552|gb|ABY92961.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X514] gi|300889331|gb|EFK84477.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X561] gi|307581429|gb|ADN54828.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X513] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/192 (22%), Positives = 93/192 (48%), Gaps = 7/192 (3%) Query: 54 LWDT---IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQ 110 ++DT +DLQ N Y +V+ E +G V GL + + G +I +G L Sbjct: 52 VFDTMGPVDLQ-INNVLDYFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLV 110 Query: 111 TSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFS 169 + I + + I I+ +L +++ H+ +F L KS I IG+ +F + Sbjct: 111 NILDIHSETQVPLMGNFIYILTILIFMLMNGHYTLFTMLAKSVDIIAIGKVAFDFSGMSQ 170 Query: 170 SFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLF 227 M+ F++ R+S P + ++ ++++G++++ +PQ+ ++ I P +G+ +L Sbjct: 171 VLTKMVSDMFLLGFRISVPIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLL 230 Query: 228 LCLSIEIIVYQF 239 + L + + + F Sbjct: 231 IMLPVYLTIIDF 242 >gi|254523778|ref|ZP_05135833.1| flagellar biosynthetic protein FliR [Stenotrophomonas sp. SKA14] gi|219721369|gb|EED39894.1| flagellar biosynthetic protein FliR [Stenotrophomonas sp. SKA14] Length = 263 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 23/204 (11%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ M +P + +P +VR+ A +I L P L + F A + EL Sbjct: 27 RIGAVAMAMPMVGTRAVPARVRVVLAGTLAIALAPLLPPVPEWTGF--DAATVLTIAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G L+R+ G +I+ GL +SD PL G G++ W Sbjct: 85 AIGVAIGFLLRLVFEAGAMAGELIAQGTGLAFAQ---MSD-----PLRG--GTSGVIGQW 134 Query: 138 ----------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLS 186 + H + +V SY +PIG L + F S L T L L+ Sbjct: 135 FYLLFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTLA 194 Query: 187 SPFLFFYIVFNISIGLLNKLVPQI 210 P + N++ G+L + P + Sbjct: 195 IPLTVAMLAVNLAFGVLARAAPAL 218 >gi|256020207|ref|ZP_05434072.1| flagellar biosynthetic protein FliR [Shigella sp. D9] gi|332281369|ref|ZP_08393782.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|332103721|gb|EGJ07067.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D I L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLISLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYV 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|307636862|gb|ADN79312.1| flagellar biosynthesis protein [Helicobacter pylori 908] gi|325995451|gb|ADZ50856.1| Flagellar biosynthesis protein [Helicobacter pylori 2018] gi|325997049|gb|ADZ49257.1| Flagellar biosynthesis protein [Helicobacter pylori 2017] Length = 255 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N Y Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNATYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+G+ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|254517019|ref|ZP_05129077.1| flagellar biosynthetic protein FliR [gamma proteobacterium NOR5-3] gi|219674524|gb|EED30892.1| flagellar biosynthetic protein FliR [gamma proteobacterium NOR5-3] Length = 256 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 106/217 (48%), Gaps = 2/217 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + ++ P S S I ++VR+ A+ S ++ P L T ++ A L + E+ Sbjct: 21 RLSAMLLAAPIFSYSSISVRVRVLLAVLVSALVAPLLPVTPVVEPL--SALGLVLALREV 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G ++++ + G ++ ++GL ++ + + ++ L ++ L Sbjct: 79 AIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMAVDPQNGVQVPVVSQLNVVLATLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ID H + A+V+S+ IP+G + +FS+ + F L L+ P L ++ N Sbjct: 139 AIDGHLMLITAVVESFELIPVGSAFSPEGMFSNVAALGTQLFASALLLALPALTAILMIN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 ++ G++ + PQ+ I+ + P I G +F+ L++ + Sbjct: 199 VAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLALPM 235 >gi|149191145|ref|ZP_01869403.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1] gi|148834983|gb|EDL51962.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1] Length = 259 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/209 (21%), Positives = 94/209 (44%), Gaps = 5/209 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VNRAYYSKLVMV 75 R+ ++ P + IP++V+L FA FS++L P + + F ++ +S + Sbjct: 20 VRLTGLFLIAPFFGDNAIPVRVKLLFAFIFSLLLAPLVHEVPPFNPFSIDTLLFS---LY 76 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 +L G + G + ++ G IS +GL + ++ ++ + ++ I +L Sbjct: 77 QLIFGFLVGFAVMIFFTIFSIAGQAISMQMGLAMAVMNDPANGISIAIIGRIMFITSMLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 +D H V +S+ P+ F +I + M+ F L ++ P + ++ Sbjct: 137 FLSLDAHLVVLLVFKESFTYWPLDSTFPFSSI-DYVLKMVSWMFATGLLVAVPAIVVMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLG 224 NI+ GL+NK P + ++ + P + LG Sbjct: 196 SNITFGLMNKAAPSLNVFALGFPMTMLLG 224 >gi|217972628|ref|YP_002357379.1| flagellar biosynthesis protein FliR [Shewanella baltica OS223] gi|217497763|gb|ACK45956.1| flagellar biosynthetic protein FliR [Shewanella baltica OS223] Length = 265 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 18/232 (7%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 RV S +M++ + P +VRL AMA + + P L + F A + ++ +++ Sbjct: 21 RVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLSAVFITAQQIII 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V ++++V+ L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVTQMVMQVFVL----TGQII------GMQTSLGFASMVDPGSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ L +D H + LV S+ T+PI + + + + F L +S Sbjct: 131 LLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALADWGSYMFGAALTMSISA 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G L L++ ++ F Sbjct: 191 IIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHFDE 242 >gi|307720324|ref|YP_003891464.1| flagellar biosynthetic protein FliR [Sulfurimonas autotrophica DSM 16294] gi|306978417|gb|ADN08452.1| flagellar biosynthetic protein FliR [Sulfurimonas autotrophica DSM 16294] Length = 254 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/208 (20%), Positives = 98/208 (47%), Gaps = 9/208 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYS 70 L+ R + +P + IPM ++ A F++V +P L +ID+ + Sbjct: 17 LLFFRFAGLFIAVPIFNHQNIPMNIKASMAFFFAVVFYSSMPALHISIDVPTILVA---- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 V+ EL LG G+++++ + F G IS +G ++ +++ ++ ++ + + Sbjct: 73 --VLGELLLGLSVGVVLQLAYNVITFAGGQISFMMGFSMASAIDPQSGVSMPIISQFLSL 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 +GL+ L ++ HH + + S T+P+G + ++F ++ F++ ++ P + Sbjct: 131 MGLMILLSLNLHHWMLLFIDHSLKTVPLGGFVMSKDLFHYIMHATSNMFLVGFIIAFPII 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP 218 + ++ G+L K +PQ + I P Sbjct: 191 ALSWLADVIFGMLMKTMPQFNLLVIGFP 218 >gi|157373226|ref|YP_001471826.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3] gi|157315600|gb|ABV34698.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3] Length = 257 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 17/231 (7%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ M++P LS SYIP+ VR+ A+ S +L P L + A + L + +L Sbjct: 22 RIMGAFMVMPFLSSSYIPVTVRVLLALTISTLLAPMLPPLPSVDAISIGALF--LAIEQL 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG----IIGL 133 +G + GL + + + G+++S +GL +M + + A N ++G + G Sbjct: 80 LVGFMLGLFLTIMIHVMTLLGAMMSMQMGL----AMAVMNDPANGSSNPILGQWFLLYGT 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L +D H LV S+ PIG +L + S F + + M+ L P + Sbjct: 136 LLFLALDGHLVAIGVLVDSFRLWPIGSGVLDLPLMGLVSRFAWIFASALMLAL----PSI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ NI+ G+L++ P + ++ + P + +G L + LS + ++S Sbjct: 192 LAMLMVNITFGVLSRAAPSLNVFALGFPMSMLMGLLCVMLSFSGLPTRYSD 242 >gi|331645395|ref|ZP_08346499.1| flagellar biosynthetic protein FliR [Escherichia coli M605] gi|331045557|gb|EGI17683.1| flagellar biosynthetic protein FliR [Escherichia coli M605] Length = 277 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 11/211 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + + +P L S + +VR+ ++A +I++ P + I + + L + ++ Sbjct: 39 RIMAFLRYMPVLDNSALTARVRIILSLALAIIITPLIPHPIP--HNLLSLNSLILTVEQI 96 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL+ + L LQ G ++S +G+++ S + T L LI + +L + Sbjct: 97 LWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYAILLFF 156 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +D H + L K + PIG L+ I +F +L + ++ L P F + Sbjct: 157 AMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PTTFIML 212 Query: 195 VFNISIGLLNKLVPQIPIYFISTP--YLIGL 223 + GLLN++ P + ++ + P L+GL Sbjct: 213 IVQGCFGLLNRIAPPLNLFSLGFPINMLVGL 243 >gi|126175116|ref|YP_001051265.1| flagellar biosynthesis protein FliR [Shewanella baltica OS155] gi|153001440|ref|YP_001367121.1| flagellar biosynthesis protein FliR [Shewanella baltica OS185] gi|160876165|ref|YP_001555481.1| flagellar biosynthesis protein FliR [Shewanella baltica OS195] gi|304409947|ref|ZP_07391566.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183] gi|307302340|ref|ZP_07582098.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175] gi|125998321|gb|ABN62396.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155] gi|151366058|gb|ABS09058.1| flagellar biosynthetic protein FliR [Shewanella baltica OS185] gi|160861687|gb|ABX50221.1| flagellar biosynthetic protein FliR [Shewanella baltica OS195] gi|304351356|gb|EFM15755.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183] gi|306914378|gb|EFN44799.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175] gi|315268361|gb|ADT95214.1| flagellar biosynthetic protein FliR [Shewanella baltica OS678] Length = 265 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 18/232 (7%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 RV S +M++ + P +VRL AMA + + P L + F A + ++ +++ Sbjct: 21 RVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLSAVFITAQQIII 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V ++++V+ L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVTQMVMQVFVL----TGQII------GMQTSLGFASMVDPGSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ L +D H + LV S+ T+PI + + + + F L +S Sbjct: 131 LLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALADWGSYMFGAALTMSISA 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G L L++ ++ F Sbjct: 191 IIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHFDE 242 >gi|328958268|ref|YP_004375654.1| flagellar biosynthesis protein FliR [Carnobacterium sp. 17-4] gi|328674592|gb|AEB30638.1| flagellar biosynthesis protein FliR [Carnobacterium sp. 17-4] Length = 230 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/198 (19%), Positives = 93/198 (46%), Gaps = 15/198 (7%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY-YSKLVMVELFLGCVHGL 85 PG S+ +P ++ +M ++ + + + + ++ L++ E+ LG G Sbjct: 3 PGFSIKGLPSVAKIALSMGITLAA----YSAVPVMGQEAGTFLFAILILKEVLLGIAIGF 58 Query: 86 LIRVYTLGLQFTGSVISTAIGLNL----QTSMGISDSLAETPLNSLIGIIGLLALWVIDF 141 + +++ ++ G+ + +G ++ SMGI+ S + + + ++ + Sbjct: 59 ITKLFFSAVEIAGNFVDFQVGFSMGAVYDPSMGINVSY----YGKIYYWLSMCVFYLTNL 114 Query: 142 HHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 HH V +L++S+ T+PI N G+ + +L F + LS+P + ++ + + Sbjct: 115 HHVVIKSLIQSFQTMPISST-NIGDFGVEGMMKLLGIIFELAFNLSAPMVIVALLTEVIL 173 Query: 201 GLLNKLVPQIPIYFISTP 218 GL+++ VPQI + + P Sbjct: 174 GLISRSVPQINVLILGMP 191 >gi|302670738|ref|YP_003830698.1| flagellar biosynthetic protein FliR [Butyrivibrio proteoclasticus B316] gi|302395211|gb|ADL34116.1| flagellar biosynthetic protein FliR [Butyrivibrio proteoclasticus B316] Length = 261 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 105/226 (46%), Gaps = 9/226 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYS 70 LI RV S I + P P V++ F + SI+L +PF + ++ Y+ Sbjct: 16 LIFVRVASFIFIAPFFGGRQTPNLVKIGFGLLLSIMLYGAVPF-----EAPSYNTIIGYT 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +V+ E+ G + G +++ L F G+++ +GL++ + + T SL Sbjct: 71 VIVLKEVLAGFLIGYAVQLCELISAFAGTIVDMQVGLSMVNIFDPNTNEQVTITGSLYSQ 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + + L + + + AL ++ IPI G +N + +S + L+ +I R+ P Sbjct: 131 VLTMMLILTGMYQYILKALADTFYLIPINGAVINADRLLASIMEFLRDYIVIGFRICLPI 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + N+ +G+L K+ PQ+ ++ + I +G L + +++ ++ Sbjct: 191 FIITFITNVILGVLAKVSPQMNMFAVGIQIKIIIGLLIMFITVTML 236 >gi|322432983|ref|YP_004210232.1| flagellar biosynthetic protein FliR [Acidobacterium sp. MP5ACTX9] gi|321165210|gb|ADW70914.1| flagellar biosynthetic protein FliR [Acidobacterium sp. MP5ACTX9] Length = 258 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 7/227 (3%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I+ + I R+ ++ P L + IP +++ +A + V+ P + ++ Q + Sbjct: 8 IIQAFLAIGVRLSGLMLFAPFLGSAVIPARIKAVLVVALTFVIYPLVSRSLTPQPLND-- 65 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + LV EL +G G+ V +Q G ++S +G +L + + + T + Sbjct: 66 -WPLLVFRELLVGVSIGIATSVVFEAVQMAGQILSIQMGYSLINILDPNTQVDTTVIAMF 124 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLS 186 I +L +D H + A+ S+ +P G +L+ +F+ + I ++++ Sbjct: 125 HQSIAMLIFLRLDVHLWLIRAIGNSFTYLPPGGAQLSRPFMFT-LIGAGSAILSIGVQIA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFI--STPYLIGLGSLFLCLS 231 +P L ++ +I +GLL K PQ+P+ + + L+GL LF L Sbjct: 184 APVLSATLLTDIVLGLLGKASPQLPLMLLGPAVKSLLGLAILFTSLK 230 >gi|295399826|ref|ZP_06809807.1| flagellar biosynthetic protein FliR [Geobacillus thermoglucosidasius C56-YS93] gi|312111662|ref|YP_003989978.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y4.1MC1] gi|294978229|gb|EFG53826.1| flagellar biosynthetic protein FliR [Geobacillus thermoglucosidasius C56-YS93] gi|311216763|gb|ADP75367.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y4.1MC1] Length = 257 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 18/238 (7%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFA-----MAFSIVLLPFLWDTIDLQNFVNRAY 68 LI RV S LP S IPM ++ + M F + P T+ L + Y Sbjct: 13 LIFARVASFFATLPLFSYRTIPMAHKIGLSFFLSWMMFFAISKP----TVAL----DEMY 64 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSL 127 +V L C+ GL + +Q G +I +G + + + A+ PL Sbjct: 65 VLLVVKEVLVGLCI-GLFAFMIISAIQIVGGLIDFQMGFAIANVID-PQTGAQNPLMGQY 122 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRL 185 + LL L ++ HH + + SY IP+ L+ G++ V F I ++ Sbjct: 123 FYMFALLLLLSVNGHHLLLDGVFYSYRFIPLDHWPRLDHGHVAEYIVKSFSAMFAIAFQM 182 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 S P + + ++++G++ + VPQ+ I+ + P I +G + L +++ I H F Sbjct: 183 SVPLVGCLFLVDVALGIVARTVPQLNIFVVGFPVKIAVGFILLIVTMAAIFLAVRHLF 240 >gi|223038929|ref|ZP_03609221.1| flagellar biosynthetic protein FliR [Campylobacter rectus RM3267] gi|222879902|gb|EEF14991.1| flagellar biosynthetic protein FliR [Campylobacter rectus RM3267] Length = 253 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 16/226 (7%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 +PE ++ + L+ R+G ++ P + IPM V+ AFS +L FL+ +++ Sbjct: 8 APERVI-TFMLLFARIGGLMLFFPFYAHEQIPMSVK----TAFSFLLTLFLFPLASIKS- 61 Query: 64 VNRAYYSKLVMV-ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 YY + +V E LG GLL+ + LQ G IS +G ++ + + L+ Sbjct: 62 -GEVYYLAVEIVSEAALGVCAGLLLHIVFASLQLAGEQISMIMGFSMASVLDPQTGLSSP 120 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF----SSFVNMLQTT 178 ++++I + L+ D HH + + S +P+G +I S +N+ Sbjct: 121 VISNIINFLALMTFLAFDGHHLILLFISNSLTHVPLGGFYPSPDIVQYASKSMINLFTFG 180 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 F+I S P L ++ ++ G+L K +PQ + + P I +G Sbjct: 181 FII----SFPILALSLLSDLIFGMLMKTMPQFNLLVVGYPIKITIG 222 >gi|170757192|ref|YP_001782263.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum B1 str. Okra] gi|169122404|gb|ACA46240.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B1 str. Okra] Length = 609 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G ++ T S + T L ++ + Sbjct: 73 EILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILYWFSTIV 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 133 FFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVINVFIQYFYISIKIAVPIVFIILI 192 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 193 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFAL 229 >gi|152980679|ref|YP_001353119.1| FliR component of the flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] gi|151280756|gb|ABR89166.1| FliR component of the flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] Length = 263 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/197 (21%), Positives = 88/197 (44%), Gaps = 14/197 (7%) Query: 34 IPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIR 88 +P +V++ + ++++ P + D + LQ + A +L +G G +R Sbjct: 38 VPARVKIGLGILLAMIIAPTVPAMPALDPMSLQGLLILAQ-------QLIIGLSIGFAMR 90 Query: 89 VYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYA 148 + G++ G +I +GL + + ++ + ++ L+ + H V Sbjct: 91 ITFAGVEMAGEIIGMTMGLGFASFFDPQTRARSSAISQFLALLTLMIYLATNLHLVVLST 150 Query: 149 LVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +S+ +PI L+ G + V F ++LS P + ++ NI++G+L + Sbjct: 151 LAQSFEMLPISSSFLSAGGMLE-VVKWGGRIFSAGVQLSLPIVAALLITNIALGILTRAA 209 Query: 208 PQIPIYFISTPYLIGLG 224 PQ+ I+ I P IG+G Sbjct: 210 PQLNIFGIGFPITIGVG 226 >gi|330814978|ref|YP_004358683.1| Flagellar biosynthetic protein FliR [Burkholderia gladioli BSR3] gi|327367371|gb|AEA58727.1| Flagellar biosynthetic protein FliR [Burkholderia gladioli BSR3] Length = 259 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 7/233 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P +V++ + SI + P L F + ++V Sbjct: 21 VRILALVATAPLIGHASVPARVKIGVSALVSIAVAPALGPLPQATVFSAEGIW---ILVN 77 Query: 77 LFL-GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGIIGLL 134 FL G G +++ ++ G I +GL + TP L ++ +L Sbjct: 78 QFLIGAALGFTMQIVFAVVEAAGDYIGLQMGLGFASFF--DPHSGNTPMLGRVLNAFAML 135 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 A D H Q+ ALV+S+ +PI L + F + L L+ P + + Sbjct: 136 AFIAFDGHLQLIAALVQSFDIVPISSNLLRAAGWRIVAGAGINVFSMGLLLALPVVAALL 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N+++G+LN+ PQI I+ + P L+ +G L + L I ++ FSH F G+ Sbjct: 196 ISNLALGILNRAAPQIGIFQVGFPVLMLVGLLLVQLMIPNLMPFFSHLFDDGY 248 >gi|159045797|ref|YP_001534591.1| flagellar biosynthesis protein FliR [Dinoroseobacter shibae DFL 12] gi|157913557|gb|ABV94990.1| flagellar biosynthesis protein FliR [Dinoroseobacter shibae DFL 12] Length = 257 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 104/230 (45%), Gaps = 2/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L + R+G+ + LP +P++++L +A + ++LP L T A + Sbjct: 18 LALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLAT-GAPPLERPADWVLAG 76 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ G G R+ LQ G++ + + L Q G + L ++ + GL Sbjct: 77 GAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLA-QVFGGAVTPDPQPALGNIFLMAGL 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + H + A + S+ +P+G N I + + + F++ LS+PF+ Sbjct: 136 ALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVVGFTLSAPFVAAA 195 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++N+++G +N+ +PQ+ + F+ P L G LS+ ++ + + F Sbjct: 196 MLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHWWYLF 245 >gi|114562372|ref|YP_749885.1| flagellar biosynthesis protein FliR [Shewanella frigidimarina NCIMB 400] gi|114333665|gb|ABI71047.1| flagellar biosynthetic protein FliR [Shewanella frigidimarina NCIMB 400] Length = 267 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 114/238 (47%), Gaps = 20/238 (8%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+ S +M++ + P +VRL ++A ++ + P L + ++L + ++ +++ Sbjct: 21 RISSMLMVMAVFGANTTPARVRLMLSVAITMAVAPILPPIENVELLALSSVFVIAQQILI 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETPL-NSLIG 129 + +G V ++++ + L TG +I +QTS+G + S +TP+ ++ Sbjct: 81 GVTMGFVTLMVMQTFVL----TGQII------GMQTSLGFASMVDPGSGEQTPVVSNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L +D H + LV S+ TIPI Q ++ N + + + F L +S Sbjct: 131 LLATLIFLAVDGHLLMIRMLVASFETIPISNQGISIAN-YRALADWGSFMFGSALTMSIS 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L L++ I+ F ++ Sbjct: 190 AIVALLLINLSFGVMTRASPQLNIFSIGFPVTMVSGLLILWLTLAPIMAHFDEVWMAA 247 >gi|300696943|ref|YP_003747604.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Ralstonia solanacearum CFBP2957] gi|299073667|emb|CBJ53187.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Ralstonia solanacearum CFBP2957] Length = 262 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/210 (19%), Positives = 91/210 (43%), Gaps = 12/210 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV + I + P S + IP +++ F +A ++ L P L + V+ Y L ++ Sbjct: 22 RVLAFIAMAPPFSNTEIPTSIKVAFGVALTVALAPML----PVPQGVSVGSYEGLWITLL 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G G +++ + G ++S IGL T + + + L I + + A Sbjct: 78 QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGRFISLTAITA 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +AL S+ +P+ G + + F + +R++ P + ++ Sbjct: 138 FIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAVFALAVRIALPIIAIMMI 197 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGS 225 N++ +L++ + P+ +G+ + Sbjct: 198 VNLAFAVLSRTAQAL------NPFAVGIAA 221 >gi|255348945|ref|ZP_05380952.1| type III secretion system, membrane protein [Chlamydia trachomatis 70] gi|255503484|ref|ZP_05381874.1| type III secretion system, membrane protein [Chlamydia trachomatis 70s] gi|255507162|ref|ZP_05382801.1| type III secretion system, membrane protein [Chlamydia trachomatis D(s)2923] gi|296435170|gb|ADH17348.1| type III secretion system, membrane protein [Chlamydia trachomatis E/150] gi|296438890|gb|ADH21043.1| type III secretion system, membrane protein [Chlamydia trachomatis E/11023] Length = 289 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/235 (19%), Positives = 108/235 (45%), Gaps = 7/235 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + + L+ Sbjct: 33 LLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYILL 92 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + GLL +Q GS I+ G+ L+ + + +P Sbjct: 93 IKEILIGVLIGLLFSFPFYAVQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHYFV 152 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLRLS 186 + W+ H + L++S IP+ ++ + + M Q ++ ++LS Sbjct: 153 TIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMCQLCLIMTIQLS 212 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 213 APAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 267 >gi|289525609|emb|CBJ15087.1| type III secretion system, membrane protein [Chlamydia trachomatis Sweden2] Length = 289 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/235 (19%), Positives = 108/235 (45%), Gaps = 7/235 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + + L+ Sbjct: 33 LLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYILL 92 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + GLL +Q GS I+ G+ L+ + + +P Sbjct: 93 IKEILIGVLIGLLFSFPFYAVQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHYFV 152 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLRLS 186 + W+ H + L++S IP+ ++ + + M Q ++ ++LS Sbjct: 153 TIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMYQLCLIMTIQLS 212 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 213 APAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 267 >gi|187778764|ref|ZP_02995237.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC 15579] gi|187772389|gb|EDU36191.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC 15579] Length = 587 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G ++ T S + T L ++ + Sbjct: 51 EILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILYWFSTIV 110 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 111 FFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVINVFIQYFYISIKIAVPIVFIILI 170 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 171 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFAL 207 >gi|308050044|ref|YP_003913610.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799] gi|307632234|gb|ADN76536.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799] Length = 259 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 9/210 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ L+P S ++P++V++ A + ++ P L + A+ + +L Sbjct: 22 RIAGAFALMPFFSNGHVPVRVKVLLAFFLATLVGPVLPTPPPVDPL--SAHALLIAFEQL 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G + GL++ + L G ++S +GL + ++ + L + + G L Sbjct: 80 AVGAMMGLILSMLLHILSMLGQMLSMQMGLAMSVMNDPANGVNHALLGQWMVMYGTLLFL 139 Query: 138 VIDFHHQVFYALVKSYGTIPIG---QELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +D H +V+S+ PIG QEL + F TF + L L+ P + + Sbjct: 140 ALDGHLVALGIVVESFTLWPIGSGVQELPLMMLIMKF----GWTFAMALMLAIPAVMAML 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + NI+ G+LNK P + +Y + P + LG Sbjct: 196 MVNITFGVLNKSAPTLNVYSLGFPLAMMLG 225 >gi|291519580|emb|CBK74801.1| Flagellar biosynthesis pathway, component FliR [Butyrivibrio fibrisolvens 16/4] Length = 237 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 3/211 (1%) Query: 23 IMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCV 82 +++ P S+S P +V++ F+ S+ LL F+ D L N+ Y+ LV+ E G + Sbjct: 3 VVVAPFFSISNTPARVKIGFSALVSL-LLYFVVDFSAL-NYSTVVGYAFLVVREALTGLI 60 Query: 83 HGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFH 142 G + G++I IGL++ + T SL ++ L + H Sbjct: 61 IGFSTYCCNFIILLAGNMIDMNIGLSMAQEYDPTLRTETTITGSLYNNFIMILLVLSGMH 120 Query: 143 HQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201 +F A ++ IPIG + + ++F S + F+I R+ P ++ N +G Sbjct: 121 RYIFKAFCDAFTLIPIGGAIFRWDSLFKSTAIFMADVFVIAFRIILPVFAVIMLLNAILG 180 Query: 202 LLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 +L K+ PQI ++ + I +G L L++ Sbjct: 181 ILVKVAPQIHMFSVGAQMKIIVGFTILFLTV 211 >gi|15611229|ref|NP_222880.1| flagellar biosynthesis protein FliR [Helicobacter pylori J99] gi|4154675|gb|AAD05742.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 255 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 11/218 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 FL+ RV + P +P+ VR ++ S + P L F N Y Sbjct: 15 DFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTL-------EFSNAIYTP 67 Query: 71 K----LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ELFLG + +++ L F IS ++GL + ++ + + Sbjct: 68 EGFIIACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L L + FHHQ+ + S +P+G+ + + + V F+I ++ Sbjct: 128 ALLLLAILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P L ++ +I G++ K PQ + I P I +G Sbjct: 188 FPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIG 225 >gi|183598642|ref|ZP_02960135.1| hypothetical protein PROSTU_02046 [Providencia stuartii ATCC 25827] gi|188020825|gb|EDU58865.1| hypothetical protein PROSTU_02046 [Providencia stuartii ATCC 25827] Length = 260 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 81/164 (49%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ ++ +G GL +++ ++ G VI +GL+ T + L ++ +I Sbjct: 73 VIVQQIVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRILNLI 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL D H + Y L+ S+ IPI + F S + F+ L L+ PF+ Sbjct: 133 MLLLFLSFDGHLWLIYILIHSFELIPIQVSPLSRDGFWSLAQFASSIFINGLMLALPFIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 +++ N+++G+LN++ PQ+ ++ + P + +G L L I I+ Sbjct: 193 LFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISIL 236 >gi|168180929|ref|ZP_02615593.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum NCTC 2916] gi|182668325|gb|EDT80304.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum NCTC 2916] Length = 609 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G ++ T S + T L ++ + Sbjct: 73 EILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILYWFSTIV 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 133 FFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYISIKIAVPIIFIILI 192 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 193 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFAL 229 >gi|91795013|ref|YP_564664.1| flagellar biosynthetic protein FliR [Shewanella denitrificans OS217] gi|91717015|gb|ABE56941.1| flagellar biosynthetic protein FliR [Shewanella denitrificans OS217] Length = 259 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 114/243 (46%), Gaps = 9/243 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SL+ CR+ M++P L +Y+P+ VR+ +++ ++++ + + A Y Sbjct: 15 SLWWPFCRIMGAFMIMPLLGNAYVPVTVRILLSLSIAVLISHLIPSVPPVDALSLSAVY- 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + +L +G + G ++ + + G+++S +GL + + A L+ + Sbjct: 74 -LAIEQLLIGVMLGFILYLLLHVMTLLGTIMSMQMGLAIAIMNDPATGDANPILSQWFLL 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 G L +D H LV S+ PIG +L F FV+ + F L L+ P + Sbjct: 133 FGTLIFLALDGHLVAIGVLVDSFRLWPIGSDL-FSLPLLGFVHRVGWLFAAALMLALPAV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH------SFL 244 ++ NI+ G+L++ P + I+ + P + +G L + LS+ + ++S +F+ Sbjct: 192 LAMLMVNITFGVLSRSAPSLNIFSLGFPMTMLMGLLCVLLSLSGVPERYSDLCLEALAFM 251 Query: 245 YGF 247 Y F Sbjct: 252 YQF 254 >gi|188494213|ref|ZP_03001483.1| flagellar biosynthetic protein FliR [Escherichia coli 53638] gi|188489412|gb|EDU64515.1| flagellar biosynthetic protein FliR [Escherichia coli 53638] Length = 260 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 19/209 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 R+ + + +P L S + ++VR+ ++A +I++ P + D + L + + L Sbjct: 22 RIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ G + GL+ + L LQ G ++S +G+++ S + T L LI + Sbjct: 75 TVEQILWGMLFGLMFQFLFLVLQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYA 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + +D H + L K + PIG L+ I +F +L + ++ L P Sbjct: 135 ILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLAL----PT 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F ++ GLLN++ P + ++ + P Sbjct: 191 TFIMLIVQGCFGLLNRIAPPLNLFSLGFP 219 >gi|154686054|ref|YP_001421215.1| flagellar biosynthesis protein FliR [Bacillus amyloliquefaciens FZB42] gi|154351905|gb|ABS73984.1| FliR [Bacillus amyloliquefaciens FZB42] Length = 259 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/234 (21%), Positives = 109/234 (46%), Gaps = 10/234 (4%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P +P R+ FA S++ L +++ Y Sbjct: 10 AFLLVFIRISAFFVTVPVFGHRNLPAVHRIGFAFFLSVICFSTLKHAPEIEI---GEQYM 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIG 129 LV+ E +G GL+ + +Q GS I +G ++ + S ++PL + Sbjct: 67 LLVIKEAVVGLSLGLIAFMMMTAIQIAGSFIDFQMGFSIANVID-PQSGTQSPLIGQFVY 125 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNI-FSSFV-NMLQTTFMIMLRLS 186 + LL + I+ H+ + + S+ IP+ Q +FGN F F+ F+I ++S Sbjct: 126 TLALLFMLSINAHYLLLDGIYYSFQYIPLDQAFPSFGNDHFGLFIAKSFNAMFIIAFQMS 185 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 +P + + ++++G++ + VPQ+ ++ + P I + L +C+++ +V + Sbjct: 186 APVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMAVMFVVVR 239 >gi|62185509|ref|YP_220294.1| putative type III export protein [Chlamydophila abortus S26/3] gi|62148576|emb|CAH64348.1| putative type III export protein [Chlamydophila abortus S26/3] Length = 289 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/224 (19%), Positives = 103/224 (45%), Gaps = 7/224 (3%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 ++P L P +++ A+++ ++ P + + + N+++ + L++ E+ +G + Sbjct: 45 IVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHVANYLDDDVFYILIIKEICIGTLIS 104 Query: 85 LLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 ++ Q GS I+ G+ L+ + + +P + W+ H Sbjct: 105 FILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLSGGHR 164 Query: 144 QVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 V L++S IPI + L I+ + + M Q ++ ++LS+P ++ + Sbjct: 165 IVLTILLQSLEVIPIHKFLPMEMMSLDAPIWITLIKMCQLCLIMTIQLSAPAAVAMLMSD 224 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 225 LFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 268 >gi|330447935|ref|ZP_08311583.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492126|dbj|GAA06080.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 258 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 23/234 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+G+ ++ +P + IP+ VR A+A S + P + T DL + + + Sbjct: 21 RIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTDLLSLNALTLAFEQAIW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL-IGIIGLL 134 + G + L + TL G +IS +GL + ++ P+N + I I+G + Sbjct: 81 GILFGLILHFLFSIMTL----LGQIISLQMGLGM--------AMMNDPVNGVSIAILGRM 128 Query: 135 ALWVI-------DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 L D H V LV+S+ + P+G L ++ + + F L ++ Sbjct: 129 FLLFSTLLFLALDGHLLVIDILVQSFTSWPVGSGLALSSV-KQILTLFGWMFSSALAIAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 188 PAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPTRYAE 241 >gi|329929261|ref|ZP_08283014.1| flagellar biosynthetic protein FliR [Paenibacillus sp. HGF5] gi|328936630|gb|EGG33073.1| flagellar biosynthetic protein FliR [Paenibacillus sp. HGF5] Length = 264 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 9/205 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFS-IVLLPFLWDTIDLQNFVNRAYYSKL 72 LI CR+ S ++ P + IP ++ + + IV L F + Q+ + Sbjct: 15 LIFCRITSFFVISPVFASRGIPSSYKIALSAIIALIVYLSFGLGEVVPQDLSYVILIVQE 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+V L LG L++ V +Q G++I IG ++ + + + + + Sbjct: 75 VLVGLLLGFTAYLIMAV----VQTAGALIDIQIGFSMANVIDPFTGTSTPLIGNFKYYLA 130 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQE----LNFGNIFSSFVNMLQTTFMIMLRLSSP 188 LL ++ HH +F A++ SY IPI + ++ GN+ V +F++ +++++P Sbjct: 131 LLVFLSMNGHHYLFDAIMYSYDWIPITGDVFGKIHEGNVTDFLVRTFSHSFVLAIQMAAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIY 213 + + ++ +G L + PQ ++ Sbjct: 191 LVAALFLTDVGLGFLARTAPQFNVF 215 >gi|90577373|ref|ZP_01233184.1| putative flagellar biosynthetic protein FliR [Vibrio angustum S14] gi|90440459|gb|EAS65639.1| putative flagellar biosynthetic protein FliR [Vibrio angustum S14] Length = 258 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 15/238 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+G+ ++ +P + IP+ VR A+A S + P + T DL + + + Sbjct: 21 RIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTDLLSLSALMLAFEQAIW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 L G + L + TL G +IS +GL + + ++ L + + L Sbjct: 81 GLLFGLIIHFLFSIMTL----LGQIISLQMGLGMAMMNDPVNGVSVAILGRMFLLFSTLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 +D H V LV+S+ + P+G L ++ + + F L ++ P + ++ Sbjct: 137 FLALDGHLLVIDILVQSFTSWPVGSGLAVSSV-KQILALFGWMFSSALAIALPAIVSMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS------IEIIVYQFSHSFLY 245 NIS G++N+ P + +Y + P L+GL S+ + +S +E++ Y LY Sbjct: 196 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPARYVELVHYSLDQLQLY 253 >gi|256750758|ref|ZP_05491643.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus CCSD1] gi|256750341|gb|EEU63360.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus CCSD1] Length = 260 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/192 (22%), Positives = 93/192 (48%), Gaps = 7/192 (3%) Query: 54 LWDT---IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQ 110 ++DT +DLQ N Y +V+ E +G V GL + + G +I +G L Sbjct: 52 VFDTMGPVDLQ-INNVLDYFIVVISEFIVGLVIGLASMISFSAIYLAGQLIDYQLGFGLV 110 Query: 111 TSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFS 169 + I + + I I+ +L +++ H+ +F L KS I IG+ +F + Sbjct: 111 NILDIHSETQVPLMGNFIYILTILIFMLMNGHYTLFTMLAKSVDIIAIGKVAFDFSGMSQ 170 Query: 170 SFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY--LIGLGSLF 227 M+ F++ R+S P + ++ ++++G++++ +PQ+ ++ I P +G+ +L Sbjct: 171 VLTKMVSDMFLLGFRISVPIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLL 230 Query: 228 LCLSIEIIVYQF 239 + L + + + F Sbjct: 231 IMLPVYLTIIDF 242 >gi|148380604|ref|YP_001255145.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. ATCC 3502] gi|153931538|ref|YP_001384891.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A str. ATCC 19397] gi|153937825|ref|YP_001388360.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A str. Hall] gi|148290088|emb|CAL84207.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC 3502] gi|152927582|gb|ABS33082.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. ATCC 19397] gi|152933739|gb|ABS39238.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. Hall] Length = 609 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G ++ T S + T L ++ + Sbjct: 73 EILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILYWFSTIV 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 133 FFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYISIKIAVPIVFIILI 192 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 193 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFAL 229 >gi|300717243|ref|YP_003742046.1| flagellar biosynthesis protein [Erwinia billingiae Eb661] gi|299063079|emb|CAX60199.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661] Length = 261 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 3/233 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 LF + RV + IM P LS I +V++ + + VLLP L T ++ F ++ Sbjct: 15 QLFWPLARVLALIMTAPLLSEKSISKKVKIGLGVMITYVLLPSLPPT-NVTLFSVGGFW- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ ++ +G G ++ ++ G VI +GL+ T + L L + + Sbjct: 73 -LLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPASRLNMPVLARFLDM 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + +L + H + + S+ T+PIG + GN F + F+ LRL+ P + Sbjct: 132 LAMLLFLSFNGHLWLISMVADSFHTLPIGGDPINGNAFLALTKAASLIFLNGLRLALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F Sbjct: 192 TLLLTLNLALGLLNRVAPQLSVFAIGFPVTLSIGIIFISLMMPLLAPFCEHLF 244 >gi|283785720|ref|YP_003365585.1| flagellar biosynthesis protein FliR [Citrobacter rodentium ICC168] gi|282949174|emb|CBG88782.1| flagellar biosynthesis protein FliR [Citrobacter rodentium ICC168] Length = 264 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L ++ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERVIPKRVKLGLGIIITVVIAPAL-PPHNVPVFSFNALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G +I +GL+ T + L L +I ++ Sbjct: 74 AMQQILIGIALGFTMQFTFAAVRTAGEIIGLQMGLSFATFVDPGSRLNMPVLARIIDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG + N F + + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVYTFHTLPIGGDPVNSNAFLALASAGSLIFLNGLMLALPVITM 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGMTLIAALMPLIAPFCEHLF 244 >gi|327394277|dbj|BAK11699.1| flagellar biosynthetic protein FliR [Pantoea ananatis AJ13355] Length = 261 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 105/231 (45%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + + P LS + +V++ A + +L+P L +++ F + L Sbjct: 17 FWPLVRILALLATAPVLSEKAVSKRVKIGLAAMITWILIPNL-PPVNVTLFSPAGFM--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ ++ +G G ++ ++ G +I +GL+ T + L L + ++ Sbjct: 74 LIQQMLIGIAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPASRLNMPVLARFLDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + L S+ T+PIG E N F + V F+ + L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLSDSFHTLPIGGEPLQANAFMALVKSGSMIFLNGMMLALPLIVL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+ +GLLN+L PQ+ I+ I P + +G L + L + ++ H F Sbjct: 194 LLTINMVLGLLNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLF 244 >gi|15895417|ref|NP_348766.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acetobutylicum ATCC 824] gi|15025140|gb|AAK80106.1|AE007715_11 FliR/FlhB fusion protein [Clostridium acetobutylicum ATCC 824] gi|325509563|gb|ADZ21199.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acetobutylicum EA 2018] Length = 610 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/223 (21%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SLF++ RV + + L + +P V++ ++ S ++P++ + + N Y+ Sbjct: 8 SLFMVFLRVFAFFIALQVMFPKSLPNTVKVMLSLCISFFVMPYI-NLSQVSALNNGFLYT 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E+ G + G + LG++ G + IG ++ T+ S + + + + Sbjct: 67 WQCICEILTGLILGFFANLMFLGVKIGGQFLDFQIGYSMMTAYDPSSESNASLIERFLNM 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ + I H V LV S+ ++ +G +N ++ +F N+ F+I +++ P Sbjct: 127 FSVVLFFSIGGHEVVIKELVSSFNSVKLGTFVINDQSVMVAF-NVFVQFFVIGFKIALPV 185 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 + ++ +I +GL+++ VPQ+ + + P I LG CL I Sbjct: 186 VLVLLITDIVMGLMSRTVPQLNVMILGMPIKILLG--LTCLMI 226 >gi|332524234|ref|ZP_08400460.1| flagellar biosynthetic protein FliR [Rubrivivax benzoatilyticus JA2] gi|332107569|gb|EGJ08793.1| flagellar biosynthetic protein FliR [Rubrivivax benzoatilyticus JA2] Length = 253 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 4/216 (1%) Query: 26 LPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGL 85 +P L +P +VR+ A + P L + +A+ LV+ ++ +G G Sbjct: 30 MPVLGTRSVPTRVRIGLAGLIAFAAQPSLPAVEPVPLDSPQAFV--LVVQQVVIGLSLGF 87 Query: 86 LIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQV 145 +R+ ++F G ++ +GLN T + G VI+ H V Sbjct: 88 AVRIVFAAVEFAGEIVGLQMGLNFAAFFDPIRGGTATATSRFYGTTIAWLFIVINGHLLV 147 Query: 146 FYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT-FMIMLRLSSPFLFFYIVFNISIGLLN 204 ALV+S+ P+G E FG + + ++ F + ++ P L + NI +G ++ Sbjct: 148 IAALVQSFTAFPVGPE-PFGFLKEARPHLWAAEIFSTGVWIALPLLAMLLFVNIVLGAVS 206 Query: 205 KLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ PQ+ ++ + P +G+G + + L++ + F+ Sbjct: 207 RVAPQMNVFSVGFPITLGVGLVGILLTLPAMQGPFT 242 >gi|226950059|ref|YP_002805150.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2 str. Kyoto] gi|226843732|gb|ACO86398.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2 str. Kyoto] Length = 609 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G + T S + T L ++ + Sbjct: 73 EILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILYWFSTIV 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 133 FFLIDGHHMLIRALVESFNVIKLGAFFINQEGIKHVLNVFIQYFYISIKIAVPIIFIILI 192 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 193 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFAL 229 >gi|74317630|ref|YP_315370.1| flagellar biosynthesis protein FliR [Thiobacillus denitrificans ATCC 25259] gi|74057125|gb|AAZ97565.1| flagellar biosynthesis protein FliR [Thiobacillus denitrificans ATCC 25259] Length = 262 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/228 (20%), Positives = 103/228 (45%), Gaps = 8/228 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVM 74 R+ +M+ P +P +V++ + +++ P L + L + ++ ++ Sbjct: 21 TRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPPMPAVGLGS-----WHGLFIL 75 Query: 75 VELFL-GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 V+ FL G G ++R+ ++ G +I +GL + + L ++ + Sbjct: 76 VQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSAGQTLVLARFFNMLAV 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L + ++ H + LV+S+ +PI E F + T F + L+L+ P + Sbjct: 136 LLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTIFSLGLQLALPLIAIL 195 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ N+++G+L + PQ+ I+ I P +G+G + L +++ QF Sbjct: 196 LMTNLTLGILTRSAPQLNIFAIGFPITLGVGLIMLDVTLPYFAPQFEQ 243 >gi|170761528|ref|YP_001787967.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A3 str. Loch Maree] gi|169408517|gb|ACA56928.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A3 str. Loch Maree] Length = 609 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G + T S + T L ++ + Sbjct: 73 EILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILYWFSTIV 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 133 FFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYISIKIAVPIIFIILI 192 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 193 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFAL 229 >gi|225850261|ref|YP_002730495.1| flagellar biosynthetic protein FliR [Persephonella marina EX-H1] gi|225646347|gb|ACO04533.1| flagellar biosynthetic protein FliR [Persephonella marina EX-H1] Length = 260 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 120/239 (50%), Gaps = 9/239 (3%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVR--LCFAMAFSIVLLPFLWDTIDL 60 I+PEI ++ L++ R+ + P L+ IP VR L +++F I+ + + I Sbjct: 5 ITPEI-AITFGLVLSRIIGIFLSFPLLNTGLIPANVRILLVVSLSFYIMKIFGINAGISP 63 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL- 119 +NF Y+ LV+ EL +G + GLL+ ++ + +IS +G T + + D Sbjct: 64 ENFSVLLYF-LLVLKELLMGFLLGLLVNLFISAFSYAAEIISYFMGF---TIVNLFDPTF 119 Query: 120 -AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT 178 + L+ ++ L ++ + V +L ++ +P+G+ +IF + L Sbjct: 120 GQISVLDRFFILLFYLLFFITGAYQIVLGSLFMTFKIMPVGKLYINTDIFPHLLEKLPIL 179 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 F + L+++ PF+ ++ N+++ L+N+L+PQI ++ + P I +G L + +I+Y Sbjct: 180 FYLALKIAFPFVLILLIVNVALALINRLIPQINVFIVGLPLQIFVGLASLAIGTSLIIY 238 >gi|167034910|ref|YP_001670141.1| flagellar biosynthesis protein FliR [Pseudomonas putida GB-1] gi|166861398|gb|ABY99805.1| flagellar biosynthetic protein FliR [Pseudomonas putida GB-1] Length = 258 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/212 (22%), Positives = 102/212 (48%), Gaps = 13/212 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 RV + +M +P +P +VRL A+A ++V++P L +D + L+ + L Sbjct: 22 RVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRGLL-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G + GL +++ G +++ +G+ + + ++ + T ++ + ++ Sbjct: 75 CAEQIIVGALFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPANGVNVTVISQFMTMLV 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + +++ H VF L +S+ T+P+G L N F + F L L P + Sbjct: 135 SVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFAAGLLLILPVIAA 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +V NI+ G++ + PQ+ I+ I P + LG Sbjct: 194 LLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLG 225 >gi|323703183|ref|ZP_08114836.1| flagellar biosynthetic protein FliR [Desulfotomaculum nigrificans DSM 574] gi|323531842|gb|EGB21728.1| flagellar biosynthetic protein FliR [Desulfotomaculum nigrificans DSM 574] Length = 255 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/131 (21%), Positives = 63/131 (48%) Query: 94 LQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSY 153 ++ G ++ IG + + M T ++ + + L+ +D HH + AL KSY Sbjct: 91 IRMAGQLLDFQIGFAMASVMDPLSGSVNTLVSRFLYFLTLVLFLNVDGHHVLIRALAKSY 150 Query: 154 GTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213 +P+ G + + + TF + +++ +P + ++ ++++GL+ K PQ+ I+ Sbjct: 151 ELVPLNAAGINGEVTLLIIRIFADTFALAVQICAPVVAVLVITDLAMGLVGKTAPQMNIF 210 Query: 214 FISTPYLIGLG 224 + P I +G Sbjct: 211 QLGFPLKIAVG 221 >gi|237796086|ref|YP_002863638.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4 str. 657] gi|229263066|gb|ACQ54099.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4 str. 657] Length = 609 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G + T S + T L ++ + Sbjct: 73 EILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILYWFSTIV 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 133 FFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYISIKIAVPIIFIILI 192 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 193 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFAL 229 >gi|124265770|ref|YP_001019774.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] gi|124258545|gb|ABM93539.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] Length = 256 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 110/237 (46%), Gaps = 23/237 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYSKLVM 74 RV + + P LSM +P++V++ A +I LP + I L + A + V+ Sbjct: 22 RVLALFISAPVLSMRSVPVRVKVALAFFITIAAQASLPPM-PVIAL----DSAQAFEAVI 76 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 +L +G G R+ G++F G +I +GLN D ++ + ++ G Sbjct: 77 QQLVIGLALGFSARIVMAGIEFAGEMIGLQMGLNFA---AFFDPISASQSTAVSRFFGTS 133 Query: 135 ALW---VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ------TTFMIMLRL 185 A W V++ H + A+++S+ P+ +F++ LQ F + L + Sbjct: 134 AAWLFVVMNGHLLLTAAVIQSFHAFPVATP---EAAPLAFLSALQPQLWGAEVFRLGLWI 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + P + + N+ +GL++++ QI I+ I P +G+G + + L++ + F+ + Sbjct: 191 ALPIITMLLFMNLVLGLISRVASQINIFAIGFPITLGVGLVGITLTLPFMEQPFTMA 247 >gi|315932323|gb|EFV11266.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 327] Length = 255 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/212 (22%), Positives = 98/212 (46%), Gaps = 6/212 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ I+ P S + IPM ++ A + L +L+ L++ +++ + Sbjct: 17 LLLARMSGLIVFFPFFSHNSIPMVIK----SAIVLFLTMYLYPLARLESLHLDSFFVLQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + GL++++ + G I+ +G + + + S + + ++ ++ L Sbjct: 73 ISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQILNLLAL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFF 192 + D HH + L S G I +G N+ ++NM + F+I +S P L Sbjct: 133 MFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMH-YLNMGMFNIFIIGFTMSFPILGI 191 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ GLL K +PQ + I P I LG Sbjct: 192 SLLADVIFGLLMKTMPQFNLLVIGYPIKIALG 223 >gi|153939695|ref|YP_001391947.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum F str. Langeland] gi|152935591|gb|ABS41089.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F str. Langeland] gi|295319965|gb|ADG00343.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F str. 230613] Length = 609 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G + T S + T L ++ + Sbjct: 73 EILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILYWFSTIV 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 133 FFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYISIKIAVPIVFIILI 192 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 193 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFIFAL 229 >gi|167626136|ref|YP_001676430.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis HAW-EB4] gi|167356158|gb|ABZ78771.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis HAW-EB4] Length = 232 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 35/239 (14%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMVELFLGC 81 M++P L +YIP VR+ A++ S ++ P L + +D +F + +++ L Sbjct: 1 MVMPFLGNAYIPATVRILLAISISALIAPMLPPFPAVDAISFQALILAVEQLLIGFMLAL 60 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG----IIGLLALW 137 ++I V TL G+++S +GL SM + + + N ++G + G L Sbjct: 61 FLSIMIHVMTL----FGAMMSMQMGL----SMAVMNDPSSGGANPILGLWFMLYGTLLFL 112 Query: 138 VIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +D H LV S+ PIG +L + + F + FM+ L P + + Sbjct: 113 ALDGHLVAIGILVDSFHLWPIGMGVFDLPLMGLIARFSWIFAAAFMLAL----PAILAML 168 Query: 195 VFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLF------------LCLSIEIIVYQF 239 V N++ G+L++ P + ++ + P L+GL +F LCL +YQF Sbjct: 169 VVNLTFGVLSRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPTRYSDLCLDALSAMYQF 227 >gi|294140215|ref|YP_003556193.1| flagellar biosynthetic protein FliR [Shewanella violacea DSS12] gi|293326684|dbj|BAJ01415.1| flagellar biosynthetic protein FliR [Shewanella violacea DSS12] Length = 265 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 14/230 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV S M++ + P++VR +MA + ++P L +++ F A + + + +L Sbjct: 21 RVSSMFMVMAVFGANTTPVRVRALLSMAITFAIVPVLPPVENVELFAASAMF--ITLQQL 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIGII 131 +G G + + TG +I +QTS+G + S +TP + +L ++ Sbjct: 79 LIGIAMGFVTLLVMQTFVLTGQII------GMQTSLGFASMVDPSSGQQTPVIGNLFLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + +D H + LV S+ TIPI + + + F L +S + Sbjct: 133 TTMIFLAVDGHLVMIRMLVMSFETIPISDQGLSITSYRMLADWGGYMFGAALTMSITPIV 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F+ Sbjct: 193 ALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLVILWLTLTPIMEHFNE 242 >gi|294084389|ref|YP_003551147.1| flagellar biosynthetic protein FliR [Candidatus Puniceispirillum marinum IMCC1322] gi|292663962|gb|ADE39063.1| flagellar biosynthetic protein FliR [Candidatus Puniceispirillum marinum IMCC1322] Length = 225 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 91/183 (49%), Gaps = 8/183 (4%) Query: 34 IPMQVR--LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYT 91 +P+Q+R + F +A S+ + + ID+ N + ++ E+ +G GL++ ++ Sbjct: 1 MPLQIRIIMAFMLAMSVAIQ---VEPIDV-NVITSLPGFMIMATEITIGLAAGLVLTIWF 56 Query: 92 LGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV-IDFHHQVFYALV 150 G G I++ GL + S +TP+ S I + L +++ +D H V ++ Sbjct: 57 AGALLAGEKIASTAGLGFAAQVDPSTG-GQTPVISQILYLFLTVIFLSLDGHLMVIRIML 115 Query: 151 KSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQI 210 +SY +P+G + G + + ++ + F + + P + ++ N+SIG++ + PQ+ Sbjct: 116 ESYSIMPLGHVPDMGILVEAGISAAGSMFFVGAIIMLPVVIILLMINVSIGVITRSAPQL 175 Query: 211 PIY 213 ++ Sbjct: 176 NLF 178 >gi|322806976|emb|CBZ04546.1| flagellar biosynthesis protein FlhB [Clostridium botulinum H04402 065] Length = 609 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 2/157 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G + G + + ++ G+++ +G + T S + T L ++ + Sbjct: 73 EILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILYWFSTIV 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ID HH + ALV+S+ I +G +N+ F I ++++ P +F ++ Sbjct: 133 FFLIDGHHMLIRALVESFNVIKLGAFFINQEGIKHVLNVFIQYFYISIKIAVPIVFIILI 192 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL 230 ++++GL+ + VPQ+ I + P L+GL + L Sbjct: 193 TDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFAL 229 >gi|188592194|ref|YP_001796792.1| flir: flagellar biosynthesis inner membrane protein. flir/mope/spar family. [Cupriavidus taiwanensis LMG 19424] gi|170938568|emb|CAP63555.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Cupriavidus taiwanensis LMG 19424] Length = 265 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 16/225 (7%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F I+ +G+ P S IP + ++ + ++V+ P TI V + L Sbjct: 21 FRILALIGTA----PLFGESTIPRRAKIALSALIAMVVSP----TIAQVPVVPVYSFGGL 72 Query: 73 VMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +++ E+ +G G ++R+ +Q G +I +GL+ + + L+ + + Sbjct: 73 MIILNEVGIGLATGFVMRLVFATVQQAGEIIGLQMGLSFASFFDRAAGGQTMVLSRFLNL 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQE-----LNFGNIFSSFVNMLQTTFMIMLRL 185 I +L +D H + ALV S+ ++PIG L+ G + F L L Sbjct: 133 IAVLLFLALDGHLLMLGALVDSFNSLPIGGNPGGTPLSAGGAMA-VARAGGMVFASGLLL 191 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + P + ++ N+++G+LN+ PQ+ I+ + P + G L L L Sbjct: 192 ALPMIAALLILNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLML 236 >gi|168704084|ref|ZP_02736361.1| flagellar biosynthesis protein FliR [Gemmata obscuriglobus UQM 2246] Length = 254 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 22/219 (10%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-------- 61 ++L L++ R+G+ + ++P L + P VR +VL F + Sbjct: 6 VALGLLLARIGAFVAVMP-LFAARTPRTVR----AGMVVVLAAFYVGPAGAELAAAPPGS 60 Query: 62 -NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 V+ Y ++ E +G G ++ L + G ++ IGLN+ +G + + Sbjct: 61 VREVDPLRYGLVLAREALIGVAMGFAFGLFLLPGRIAGEFVTQQIGLNISPQLGPAGGES 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS---FVNMLQT 177 PL ++ G L ++D HH V A S+ +PIG G++ V L + Sbjct: 121 GGPLTNVFETAGALVFLLVDGHHIVLMAFHASFAALPIG-----GSVVPEAGPMVTGLAS 175 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 + + L L++P + +I++ ++ + PQ+ IY + Sbjct: 176 AYEMGLLLAAPLALCLFLLSITLAVMARAAPQLNIYSVG 214 >gi|229544410|ref|ZP_04433468.1| flagellar biosynthetic protein FliR [Bacillus coagulans 36D1] gi|229324895|gb|EEN90572.1| flagellar biosynthetic protein FliR [Bacillus coagulans 36D1] Length = 259 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/246 (21%), Positives = 108/246 (43%), Gaps = 18/246 (7%) Query: 11 SLFLIV-CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 S+FL+V RV + +++P S +P + R+ S+++ TI + F Y Sbjct: 9 SIFLLVFIRVTTFFIMMPLFSHRSVPARFRIGLGFFLSVLVT----YTIHAKPFTMDGAY 64 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN---- 125 L++ E +G + G + +Q G+ I G ++ + S A+TPL Sbjct: 65 FMLMIKEALVGLLLGFVAYFILSAVQLAGTFIDFQAGFSMANVID-PQSGAQTPLTGEYL 123 Query: 126 -SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMI 181 + ++ L ++Y SY IP+ Q L N+ +L F++ Sbjct: 124 YTFALLLLLSLNGHHLLLDGIYY----SYSFIPLDQAWVHLGSFNLAKYLATLLARVFLV 179 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++S+P + + +I++G++ + VPQ+ I+ + P I + + L +++ I H Sbjct: 180 AFQMSAPVVAVLFLTDIALGIIARTVPQLNIFVVGFPVKIAVSLIALAVAMGTIYIAVEH 239 Query: 242 SFLYGF 247 F + F Sbjct: 240 LFEWMF 245 >gi|313905146|ref|ZP_07838515.1| type III secretion system inner membrane R protein [Eubacterium cellulosolvens 6] gi|313470049|gb|EFR65382.1| type III secretion system inner membrane R protein [Eubacterium cellulosolvens 6] Length = 250 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 7/222 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY-YSKL 72 LIV R+ I+L P S IP V+ AFS++L F+W L + ++ + Sbjct: 7 LIVMRMTGAIVLNPMTGRSEIPALVKGALTFAFSLML--FMWTGGRLAVAPKTWFEFASM 64 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + EL LG G + + ++F +++ +GL++ T + L Sbjct: 65 ALRELLLGFTIGFGMELSMTVIRFGTAIVDYMMGLSMAQVYDPRSGAQMTVSSGLYTTFM 124 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM-LRLSSPFLF 191 +L V D H + F + + IP G ++F F+ +IM L+ + P + Sbjct: 125 MLVFLVNDGHLRFFQLVFGTADKIPFG-AVHFTVELPQFMMKYYCECIIMGLQFAMPIIV 183 Query: 192 FYIVFNISIGLLNKLVPQIPIYFIS--TPYLIGLGSLFLCLS 231 ++ ++IG++ ++VPQI I+ I+ ++GL LFL + Sbjct: 184 IELLAEVAIGIMMRVVPQINIFAINFQVKIIVGLVMLFLLFA 225 >gi|86152607|ref|ZP_01070812.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612403|ref|YP_001000854.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni 81-176] gi|157415443|ref|YP_001482699.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni 81116] gi|283956577|ref|ZP_06374056.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 1336] gi|85843492|gb|EAQ60702.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249142|gb|EAQ72103.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 81-176] gi|157386407|gb|ABV52722.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 81116] gi|283791826|gb|EFC30616.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 1336] gi|307748085|gb|ADN91355.1| Flagellar biosynthetic protein fliR [Campylobacter jejuni subsp. jejuni M1] Length = 255 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 97/212 (45%), Gaps = 6/212 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ I+ P S + IPM ++ + ++ L P L++ +++ + Sbjct: 17 LLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPL----ARLESLHLDSFFVLQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + GL++++ + G I+ +G + + + S + + ++ ++ L Sbjct: 73 ISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQILNLLAL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFF 192 + D HH + L S G I +G N+ ++NM + F+I +S P L Sbjct: 133 MFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMH-YLNMGMFNIFIIGFTMSFPILGI 191 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ GLL K +PQ + I P I LG Sbjct: 192 SLLADVIFGLLMKTMPQFNLLVIGYPIKIALG 223 >gi|108758221|ref|YP_630669.1| FliR/MopE/SpaR family protein [Myxococcus xanthus DK 1622] gi|108462101|gb|ABF87286.1| FliR/MopE/SpaR family protein [Myxococcus xanthus DK 1622] Length = 272 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/214 (20%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ ++ L++CRV ++ P L +P ++++ + SIVL P + ++ Sbjct: 19 VIFTVALVMCRVMPVLIFSPFLGGEVVPTELKMGIGLTLSIVLYPLIAGSVTSIPLSALP 78 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y + L+ E+F+G ++ + G+++ T G N + + + L S Sbjct: 79 YIA-LMAKEVFVGFTIAFVVNTLFEAARVAGNLVDTMSGSN-NAQLYVPQLGQQVTLFSS 136 Query: 128 IGI-IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + ++ ++ HH V AL S +P+ F + F +++ F +LR+S Sbjct: 137 FKVQLAVVLFLTLNGHHLVIEALADSLVAVPLDGFPRFHDGPWPFFDLMIRVFADLLRVS 196 Query: 187 SPFLFFYIVF----NISIGLLNKLVPQIPIYFIS 216 ++ ++++G +N++ PQI ++FIS Sbjct: 197 LALAAPAMLATFLTDVALGAINRVAPQIQVFFIS 230 >gi|205356203|ref|ZP_03222969.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345808|gb|EDZ32445.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 255 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 97/212 (45%), Gaps = 6/212 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ I+ P S + IPM ++ + ++ L P L++ +++ + Sbjct: 17 LLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPL----ARLESLHLDSFFVLQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + GL++++ + G I+ +G + + + S + + ++ ++ L Sbjct: 73 ISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQILNLLAL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFF 192 + D HH + L S G I +G N+ ++NM + F+I +S P L Sbjct: 133 MFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMH-YLNMGMFNIFIIGFAMSFPILGI 191 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ GLL K +PQ + I P I LG Sbjct: 192 SLLADVIFGLLMKTMPQFNLLVIGYPIKIALG 223 >gi|148976241|ref|ZP_01812965.1| putative flagellar biosynthetic protein FliR [Vibrionales bacterium SWAT-3] gi|145964335|gb|EDK29590.1| putative flagellar biosynthetic protein FliR [Vibrionales bacterium SWAT-3] Length = 260 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 96/218 (44%), Gaps = 7/218 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VNRAYYSKLVMV 75 R ++ P IP++V+L FA FS++L P + + F ++ +S Sbjct: 21 VRFTGLFLIAPFFGDKAIPVRVKLLFAFIFSLLLAPMVKEVPPFNPFSIDTLLFS---FY 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 +L G + G + ++ G IS +GL + ++ ++ + ++ I +L Sbjct: 78 QLIFGFLIGFAVMIFFTIFSIAGQAISMQMGLAMAVMNDPANGVSIAIIGRIMFITSMLL 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 +D H V +S+ P+ F +I + M+ F L ++ P + ++ Sbjct: 138 FLSLDGHLVVLLVFKESFEYWPLNSPFPFNSI-EYVLKMVSWMFATGLLVAVPAIVVMLL 196 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 NI+ GL+NK P + ++ + P L+GL +L L+ Sbjct: 197 SNITFGLMNKAAPSLNVFALGFPMTMLLGLFALMASLT 234 >gi|322378523|ref|ZP_08052971.1| flagellar biosynthesis protein FliR [Helicobacter suis HS1] gi|322379824|ref|ZP_08054119.1| flagellar biosynthesis protein FliR [Helicobacter suis HS5] gi|321147747|gb|EFX42352.1| flagellar biosynthesis protein FliR [Helicobacter suis HS5] gi|321149037|gb|EFX43489.1| flagellar biosynthesis protein FliR [Helicobacter suis HS1] Length = 275 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/234 (20%), Positives = 95/234 (40%), Gaps = 3/234 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ I L P + IP+ +R + ++V P L + + Sbjct: 38 LLFLRLSGVIALFPFFDNNLIPVSIRGALSFFLTLVFYPTLPHP---PLYTTAETFLIAC 94 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E FLG ++V + F IS ++GL + ++ + + ++ ++ + Sbjct: 95 CAEFFLGLCASFFLQVVFHAIAFATDTISFSMGLTMASAYDPISGAQKAIVGQVVLLLAI 154 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L + HH + + S IP+G + +I + + L FM+ ++ P L Sbjct: 155 LIMLQTSMHHLIILWVQHSLEKIPLGGFVFTSHIAQASMQALGHLFMVGFSMAFPILAII 214 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + +I G++ K PQ + I P I + L L L + I+++F L F Sbjct: 215 MFGDIVFGMIMKTHPQFNLLAIGFPLKIAIALLGLILIMASIMHRFKEQLLQAF 268 >gi|28211317|ref|NP_782261.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88] gi|28203757|gb|AAO36198.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88] Length = 539 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 107/220 (48%), Gaps = 7/220 (3%) Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94 P +++ F + S +L+P + D + N N + E+ G G + ++ + + Sbjct: 36 PAILKVAFTLILSYMLVPGI-DYSQISNINNTMVFITNCSSEIITGLALGFMTQLCFMAI 94 Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154 + G+ + +G ++ + + + S T + L+ GL+ +++D HH + L+ S+ Sbjct: 95 RLGGNYMDIQVGFSMVSMLDPNTSSNSTLIERLLYWTGLILFFMVDGHHMLITQLIDSFN 154 Query: 155 TIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214 + IG+ + S + + F++ L+++ P + I+ +++GL+ + VPQ+ + Sbjct: 155 AVTIGRFILNQETASIIIEVFIQFFIMGLKIAIPIVLIIIIAELTLGLVGRAVPQLNVMI 214 Query: 215 ISTPY--LIGLGSLFLCLSI--EIIVYQFSH--SFLYGFF 248 + P ++GL +L L + I ++I FS+ GFF Sbjct: 215 LGLPLKIIVGLATLILAMPIIFKLIATGFSNIPEAFKGFF 254 >gi|83747645|ref|ZP_00944681.1| FliR [Ralstonia solanacearum UW551] gi|207739726|ref|YP_002258119.1| flagellar biosynthetic protein flir [Ralstonia solanacearum IPO1609] gi|83725697|gb|EAP72839.1| FliR [Ralstonia solanacearum UW551] gi|206593108|emb|CAQ60014.1| flagellar biosynthetic protein flir [Ralstonia solanacearum IPO1609] Length = 262 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/210 (19%), Positives = 90/210 (42%), Gaps = 12/210 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV + I + P S + IP +++ F + ++ L P L + V+ Y L ++ Sbjct: 22 RVLAFIAMAPPFSNTEIPTSIKVAFGVVLTVALAPML----PVPQGVSVGSYEGLWITLL 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G G +++ + G ++S IGL T + + + L I + + A Sbjct: 78 QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGRFISLTAITA 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +AL S+ +P+ G + + F + +R++ P + +V Sbjct: 138 FIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAVFALAVRIALPIIAIMMV 197 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGS 225 N++ +L++ + P+ +G+ + Sbjct: 198 VNLAFAVLSRTAQAL------NPFAVGIAA 221 >gi|237753461|ref|ZP_04583941.1| flagellar biosynthetic protein flir [Helicobacter winghamensis ATCC BAA-430] gi|229375728|gb|EEO25819.1| flagellar biosynthetic protein flir [Helicobacter winghamensis ATCC BAA-430] Length = 259 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 79/172 (45%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ LG + + +++ + F G +IS A+GL + + + + L+ ++ LL Sbjct: 77 EVMLGFLASMALQIVFGMISFGGELISFAMGLTIANAYDPVTGAQKPIVGQLLTLLALLI 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + +D+HH FY + +S IP+G + N + F+I L +S P + ++ Sbjct: 137 MLGLDYHHLFFYFVSESVKEIPLGGFMYSQNYIEYIIKSFSHIFVIGLTMSFPIIALILL 196 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +I G++ K PQ + I P I + L + + I+ F FL F Sbjct: 197 SDIIFGMIMKAHPQFNLLAIGFPVKIAIAFAVLIVIVPAIILHFKREFLSAF 248 >gi|116694512|ref|YP_728723.1| flagellar biosynthesis protein [Ralstonia eutropha H16] gi|113529011|emb|CAJ95358.1| flagellar biosynthesis protein [Ralstonia eutropha H16] Length = 261 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 12/221 (5%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F I+ +G+ P S IP + ++ + ++V+ P TI V + L Sbjct: 21 FRILALIGTA----PLFGESTIPRRAKIALSAMVAVVVSP----TIAQLPVVPVYSFGGL 72 Query: 73 VMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +++ E+ +G G +R+ +Q G +I +GL+ + + L+ + + Sbjct: 73 MIILNEVGIGLATGFAMRLVFATVQQAGEIIGLQMGLSFASFFDRAAGGQTMVLSRFLNL 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I +L +D H + ALV S+ +PIG L+ G + F L L+ P Sbjct: 133 IAMLLFLALDGHLLMLGALVDSFSGLPIGGTPLSAGGAMA-VARAGGMVFSSGLLLALPM 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + + N+++G+LN+ PQ+ I+ + P + G L L L Sbjct: 192 IAALLTLNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLML 232 >gi|258624669|ref|ZP_05719604.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM603] gi|262173374|ref|ZP_06041051.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451] gi|258583061|gb|EEW07875.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM603] gi|261890732|gb|EEY36719.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451] Length = 258 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 100/219 (45%), Gaps = 11/219 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RVG+ + +P + IP+ VR A+A ++ P + + F + + L ++ Sbjct: 21 RVGAVFISMPFFGDALIPIWVRSLLALAIVVITAPLIPTMPAVDLFSMTSLF--LAFEQV 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL++ + G ++S +GL + + ++ L L I L Sbjct: 79 IWGIIFGLILHMLFTVFAMLGQIVSLQMGLGMAMMNDPVNGISVAVLGRLFLIFSTLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 ++ H V L++S+ P+G L+ + ++F M ++ L L+ P + + Sbjct: 139 ALEGHLLVIDVLIQSFVIWPVGSGITSLSLQGVINAFGWMFASS----LALALPAIISML 194 Query: 195 VFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 + NIS G++N+ P + IY + P L+GL S+ + +S Sbjct: 195 LANISFGVMNRAAPSLNIYALGFPMTMLLGLFSVLISVS 233 >gi|255099431|ref|ZP_05328408.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-63q42] Length = 516 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 9/141 (6%) Query: 109 LQTSMGIS-------DSLAETPL-NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ 160 + MG+S +S+ +T L ++L+ L+ + +D HH + + S+ IPIG+ Sbjct: 1 MDQQMGLSMINMFDPNSMTQTTLIDNLMNWTALMIFFNMDGHHVLIRGIRYSFELIPIGK 60 Query: 161 ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 NI +N+ F+ +++ P + ++ + +GL+++ VPQ+ + + P Sbjct: 61 PFVDNNI-DYIINIFVQCFLTGFKIAIPIVLCLLMADFILGLISRSVPQLNVMIVGMPLK 119 Query: 221 IGLGSLFLCLSIEIIVYQFSH 241 I +G +SI +IV Q SH Sbjct: 120 ILVGIALFIISIPLIVNQISH 140 >gi|46445834|ref|YP_007199.1| putative type III secretion inner membrane protein SctT [Candidatus Protochlamydia amoebophila UWE25] gi|46399475|emb|CAF22924.1| putative type III secretion inner membrane protein SctT [Candidatus Protochlamydia amoebophila UWE25] Length = 280 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 19/213 (8%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLP---FLWDTIDLQNFVNRAYYSKLVM 74 R+ I L P +P V++ A++F ++ LP F+ T N + Y+ K Sbjct: 32 RMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQLIFVTTTPITFNLLLVLYFFK--- 88 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE---TPLNSLIGII 131 ELF+G + G LI + + +Q G +I G +S+ I+D + +PL +L ++ Sbjct: 89 -ELFVGLLLGYLISIPFIIVQNCGILIDHQRG---GSSLMINDPTLQNQSSPLGTLFNLV 144 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRL 185 + ++ID + + +SY +P + L NI + ++ ++ +L Sbjct: 145 LIYLFFMIDGPFMILDIISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGKVMILSTQL 204 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++P L ++ + +G+ N+L PQ+ I F+ P Sbjct: 205 AAPALIMILMTDFFLGIANRLAPQVQITFLGMP 237 >gi|258622508|ref|ZP_05717530.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM573] gi|258585208|gb|EEW09935.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM573] Length = 258 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 100/219 (45%), Gaps = 11/219 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RVG+ + +P + IP+ VR A+A ++ P + + F + + L ++ Sbjct: 21 RVGAVFISMPFFGDALIPIWVRSLLALAIVVITAPLIPTMPAVDLFSMTSLF--LAFEQV 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL++ + G ++S +GL + + ++ L L I L Sbjct: 79 IWGIIFGLILHMLFTVFAMLGQIVSLQMGLGMAMMNDPVNGISVAVLGRLFLIFSTLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 ++ H V L++S+ P+G L+ + ++F M ++ L L+ P + + Sbjct: 139 ALEGHLLVIDVLIQSFVIWPVGSGITSLSLQGVINAFGWMFASS----LALALPAIISML 194 Query: 195 VFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 + NIS G++N+ P + IY + P L+GL S+ + +S Sbjct: 195 LANISFGVMNRAAPSLNIYALGFPMTMLLGLFSVLISVS 233 >gi|237731998|ref|ZP_04562479.1| flagellar biosynthesis protein FliR [Citrobacter sp. 30_2] gi|226907537|gb|EEH93455.1| flagellar biosynthesis protein FliR [Citrobacter sp. 30_2] Length = 261 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P + +D+ F A + Sbjct: 17 FWPLLRVLALISTAPILSERAIPKRVKLGLGLMITVVIAPSI-PAVDVPIFSVGALWQA- 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G +I +GL+ T L L LI ++ Sbjct: 75 -MQQILIGIALGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLARLIDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGGNPVNSNAFLALARAGSLIFLNGLMLALPVMTL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ ++ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSVFVIGFPLTLTVG 225 >gi|116514993|ref|YP_802622.1| hypothetical protein BCc_050 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256847|gb|ABJ90529.1| type III protein export, membrane component [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 266 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++F+G V G LI+ GL F G + S IGL+ + ++L I L Sbjct: 78 QIFIGIVLGFLIKNVLFGLFFIGEIFSLQIGLSSLNFFYFDKNTYSLIFSNLFSIFFLFT 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ + H ++ L+ S+ P+ + + IF VN L F + P LFF+++ Sbjct: 138 FFICNMHLKLLVLLIHSFEIYPLNNFIFYKKIFFYIVNFLNIIFFQSVSFILPILFFFLI 197 Query: 196 FNISIGLLNKLVPQIPIY 213 I+ +NKL+P++ + Sbjct: 198 LYITYIFINKLIPKVSFF 215 >gi|83646792|ref|YP_435227.1| flagellar biosynthesis pathway protein FliR [Hahella chejuensis KCTC 2396] gi|83634835|gb|ABC30802.1| Flagellar biosynthesis pathway, component FliR [Hahella chejuensis KCTC 2396] Length = 226 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 7/161 (4%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 EL LG L + Q G +I G M + + AE + +++ Sbjct: 46 ELVLGLAMALGLHAAFTVFQIAGRLIDFQSGFGAANIMNPATNSAEPLMGTILLFFATFV 105 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + +D HH V L S +P G ++F F M F + L++P L Sbjct: 106 FFSMDAHHMVIKGLAYSVAQVPPGSGLVRMDFPGAMKQFGLM----FSFAMVLAAPVLAV 161 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 + ++ + ++ + +PQ+ +YF+ P + LG + LS++ Sbjct: 162 LFLLDVGVAVMARTMPQMNVYFLFLPLKVALGIIVTALSLK 202 >gi|332669211|ref|YP_004452219.1| flagellar biosynthetic protein FliR [Cellulomonas fimi ATCC 484] gi|332338249|gb|AEE44832.1| flagellar biosynthetic protein FliR [Cellulomonas fimi ATCC 484] Length = 255 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 10/211 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L R+ + +++ P S +P V++ A+ ++ + P L + + A+ LV Sbjct: 18 LASVRMAAFLVIAPPFSQRAVPPFVKVALALGLALAVAPRLEP---VPSDTTPAFVGALV 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP---LNSLIGI 130 + +G G L+ + +Q GS+I G L T+ D L++T L + Sbjct: 75 -AQAVIGAGLGFLVSLVFSAVQSAGSLIDLFGGFQLATAY---DPLSQTSGAQFGRLYQM 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L+ L+ D + V LV+++ +P+G L+ + S+ L F+ L+++ P L Sbjct: 131 TALVLLFASDAYQVVVAGLVRTFDALPLGALLDPAALASTLTEGLTQMFLAALQIAGPLL 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 + ++ +GLL ++ P + + + P I Sbjct: 191 VVLFLADVGLGLLTRVSPALNAFAMGFPLKI 221 >gi|157738151|ref|YP_001490835.1| flagellar biosynthetic protein FliR [Arcobacter butzleri RM4018] gi|157700005|gb|ABV68165.1| flagellar biosynthetic protein FliR [Arcobacter butzleri RM4018] Length = 249 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 103/239 (43%), Gaps = 13/239 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ + ++ +P + I + VR+ FA SI + PF +D+ +N+ + + Sbjct: 18 LLLARILAFVVFMPVFGHTAINVTVRIAFAFYLSIFIYPF----VDIVTSINQNNFIISL 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ LG V +L+ + ++ G + + L++ + + E + L+ I L Sbjct: 74 ISEITLGLVAAMLVNIIFSAVRIIGEFVEYSTALSMAMMFDPTTNSQEGLVAKLLFWISL 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS-----FVNMLQTTFMIMLRLSSP 188 + + + L KS+ I +G NIFS ++ ++ F + P Sbjct: 134 MLFFQTGMYEMTLVILAKSFTMIHLGS----FNIFSYDGIQLAIDEIKRMFSFAFAFALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 F + ++ G K +P + I+ L +FL L +EI F++ F+ F Sbjct: 190 LFFIGFIMDVYYGYGTKSMPAFSPFIITFQLKFALIFIFLILGMEIFADTFTNYFINKF 248 >gi|238025695|ref|YP_002909926.1| flagellar biosynthetic protein FliR [Burkholderia glumae BGR1] gi|237874889|gb|ACR27222.1| Flagellar biosynthetic protein FliR [Burkholderia glumae BGR1] Length = 259 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 7/204 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + +P++V++ + +I + P L F + ++V Sbjct: 21 VRILALVAAAPLIGNAAVPVRVKIGLSALTAIAVAPALGPLPQATVFSAEGIW---ILVN 77 Query: 77 LFL-GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLL 134 FL G G ++++ ++ G I +GL T TP+ ++ +L Sbjct: 78 QFLIGVSMGFVMQIVFAVVEAAGDYIGLQMGLGFATF--FDPHAGTTPMMGRILNAFAML 135 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 A D H Q+ ALV+S+ ++PI +L + + F + L L+ P + + Sbjct: 136 AFVAFDGHLQLIAALVESFASVPISADLLHPAGWQTLAGAGINVFAMGLLLALPVVAALL 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTP 218 + N+++G+LN+ PQI I+ I P Sbjct: 196 IANLALGILNRAAPQIGIFQIGFP 219 >gi|259908770|ref|YP_002649126.1| flagellar biosynthesis protein FliR [Erwinia pyrifoliae Ep1/96] gi|224964392|emb|CAX55901.1| Flagellar biosynthesis protein [Erwinia pyrifoliae Ep1/96] gi|283478746|emb|CAY74662.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae DSM 12163] Length = 261 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 3/233 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 LF + RV + IM P LS I +V++ + + VL+P L T ++ F ++ Sbjct: 15 QLFWPLARVLALIMTAPLLSEKSISRKVKIGLGVMITWVLIPSLPPT-NVTLFSVGGFW- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ ++ +G G ++ ++ G VI +GL+ T L L + + Sbjct: 73 -LLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARFLDM 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + +L + H + + S+ T+PIG E GN F + F+ +RL+ P + Sbjct: 132 LAMLLFLSFNGHLWLISMVADSFQTLPIGGEPLNGNAFMALTKAANIIFLNGMRLALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+ +GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F Sbjct: 192 TLLLTLNLGLGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLF 244 >gi|256376455|ref|YP_003100115.1| type III secretion system inner membrane R protein [Actinosynnema mirum DSM 43827] gi|255920758|gb|ACU36269.1| type III secretion system inner membrane R protein [Actinosynnema mirum DSM 43827] Length = 256 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 17/224 (7%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW----DTIDLQNF 63 ++++L L R + +M+ P + IPM V+ A+ ++ ++P L ++D + Sbjct: 9 VLVALLLAATRSAAWLMVCPPFNGKAIPMTVKGMLAVGLALPVVPRLSAGSVPSLDTWSL 68 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 V A ++ +G G L V G+Q G ++ G +L + D ++ + Sbjct: 69 VIAAGE------QVVVGAGLGFLTAVIFAGVQAAGDLLDVFGGFSLAFAF---DPMSFSG 119 Query: 124 LNSLIGII-GLLA---LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 N+++G GLLA L+V H + SY IP+ L+ G + + L Sbjct: 120 NNAVLGRFYGLLATTLLFVTGSHQVIIRGFTLSYDAIPLDGGLSLGRLGTLLTTGLGQLL 179 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223 + +++ P + ++ +GLLN++ P + + I P IGL Sbjct: 180 LSAAQIAGPLIVVLFCADVGLGLLNRIAPALNPFQIGFPAKIGL 223 >gi|225849159|ref|YP_002729323.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium azorense Az-Fu1] gi|225644067|gb|ACN99117.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium azorense Az-Fu1] Length = 257 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/226 (23%), Positives = 110/226 (48%), Gaps = 10/226 (4%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY- 68 ++L L+ R+ + P +S + IP V++ ++F+ F D+Q VN+ Sbjct: 10 IALALVFSRIIAFFSTFPLISSTVIPHNVKVLLVVSFAF----FTMLNFDIQVKVNQIEL 65 Query: 69 --YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L++ E+F+G GL++ + + G ++ +GL + + + +T + S Sbjct: 66 ITFLILIVKEIFIGLSLGLIVNILISAFSYAGEIVGFLMGLTVMNMY--NPAFGQTSVLS 123 Query: 127 LIGIIGLLALWVIDFHHQVFY-ALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + L+ + +Q+ +L KS+ +P+ + IF + F++ ++ Sbjct: 124 GFFVFLFYLLFFVSGSYQILIGSLFKSFEILPLTEASINQGIFPYLIEKSGDIFLLSFQM 183 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 + PF+ +VFN+ + L+N+L+PQI ++FI P I +G + L S Sbjct: 184 AFPFILVLLVFNVVLALINRLIPQINVFFIGLPAQIWIGFIVLMFS 229 >gi|167568048|ref|ZP_02360964.1| type III secretion system EscT protein [Burkholderia oklahomensis EO147] Length = 260 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%) Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +Y +L EL +G + G + L G +I TA G ++ + + +P + Sbjct: 69 HYLRLAFGELCVGALIGFCAAIPFWALDMAGFLIDTARGASMASVLNPLLGAQSSPFGMV 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLS 186 + L V + + + SY T+P G L FG + + Q + + LR + Sbjct: 129 FSQVFTLLFLVSGGFNTLIETIYASYVTLPPGAPLRFGPDALALLTQQWQLMYELCLRFA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P L ++ ++++GL+N+ Q+ ++F+S P Sbjct: 189 MPALAAILLVDMALGLVNRSAQQLNVFFLSMP 220 >gi|114320140|ref|YP_741823.1| flagellar biosynthetic protein FliR [Alkalilimnicola ehrlichii MLHE-1] gi|114226534|gb|ABI56333.1| flagellar biosynthetic protein FliR [Alkalilimnicola ehrlichii MLHE-1] Length = 260 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/208 (18%), Positives = 92/208 (44%), Gaps = 2/208 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SL + RVG+ +M+ P +P++VR+ F +A ++ +LP + + + Sbjct: 14 SLMWPLMRVGAMVMVAPVFGNQLMPVRVRVFFGLALAVAVLPAVGEVPPVDPLSAEGLL- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + + ++ +G + G ++ + + G ++ A+GL T + ++ L+ ++ + Sbjct: 73 -ISVQQVLIGLIMGFMLLLAVNAVVVAGESMALAMGLGFATMVDPQTGMSVPVLSQVMLV 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 I L I H + S+ +PI E F F + ++ P + Sbjct: 132 IVTLVFLGIGGHLMLIELTAASFSALPIAAEGVGREAFFEVAAWASQMFAGAVLIALPVV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++ N+++G++ + PQ+ ++ + P Sbjct: 192 TVLLIINLALGVMTRAAPQMNVFSVGLP 219 >gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium ljungdahlii DSM 13528] gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium ljungdahlii DSM 13528] Length = 606 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/237 (19%), Positives = 110/237 (46%), Gaps = 9/237 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 +L L+ R+ S +L+P S IP V++ + + +L+P + D + + N ++ Sbjct: 9 ALILVSIRIFSFFILVPIFFPSGIPNVVKVGLTVVMAYILMPGI-DYASISSIDNTMFFV 67 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E+ G G L + ++ G+++ +G + + + + T + L+ Sbjct: 68 MNCLNEVAAGLTLGFLTSLCFSMVRIAGNLMDMQMGFAMVSMFDPTSNSNTTLIERLLYW 127 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIG----QELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ +++D HH + +L++S+ I +G + + IF +F+ F I +++ Sbjct: 128 FSLVIFFIVDGHHMLIKSLIQSFSVIKLGSFFLNQASINIIFKAFIEY----FGIAIQIG 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++ L+ + VPQ+ I + P + +G C ++ I + H F Sbjct: 184 IPIVLILLFTDLTMSLIARTVPQLNIMILGLPVKVLIGFASFCFALPIFLKLIEHLF 240 >gi|302389678|ref|YP_003825499.1| flagellar biosynthetic protein FliR [Thermosediminibacter oceani DSM 16646] gi|302200306|gb|ADL07876.1| flagellar biosynthetic protein FliR [Thermosediminibacter oceani DSM 16646] Length = 254 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 29/227 (12%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPF---------LWD 56 E I+++ L+ R+ +L P P+Q RL + +++L P LWD Sbjct: 2 EFIIVNFLLVFFRILGFFILTPVFGRREFPVQGRLGVSALIAVILYPVVNKIPLPDNLWD 61 Query: 57 TIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGIS 116 T+ L + E +G G + V + G +I +G + + Sbjct: 62 TV------------ILFIRETAVGLSIGFITFVVFSAVYICGEIIDLQMGFGIVNVIDPQ 109 Query: 117 DSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ 176 + + + I+ +L I+ HH + AL+KSY +P+G + SF+ + Sbjct: 110 TNAQIPVMGNFFYILTILIFLSINGHHVLLNALMKSYDILPLGG----AGLHDSFLEGML 165 Query: 177 TTFMIM----LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPY 219 +F M +++S P + + + ++G++ + VPQ+ ++ + P+ Sbjct: 166 KSFFEMFAAGVKMSIPVVAATFLADFALGVIARTVPQMNVFIVGLPF 212 >gi|238751769|ref|ZP_04613257.1| Flagellar biosynthetic protein fliR [Yersinia rohdei ATCC 43380] gi|238710040|gb|EEQ02270.1| Flagellar biosynthetic protein fliR [Yersinia rohdei ATCC 43380] Length = 260 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P LS I +V++ A+ + ++ P L +++ F + + Sbjct: 17 FWPLIRILALITTAPVLSEKQINRKVKVGLAVLITFLIAPSL-PPVNIPLFSTAGLW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G GL ++ ++ G VI +GL+ T S L + I+ Sbjct: 74 AAQQILIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLARFLNILA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L D H + L S+ T+PI E GN F + F+ L L+ P + Sbjct: 134 MLLFLCFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++G+LN++ PQ+ ++ I P + +G + + L + ++ H F Sbjct: 194 LLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISIGLIMPLLAPFTEHLF 244 >gi|292487980|ref|YP_003530857.1| flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430] gi|292899200|ref|YP_003538569.1| flagellar biosynthetic protein FliR [Erwinia amylovora ATCC 49946] gi|291199048|emb|CBJ46159.1| flagellar biosynthetic protein FliR [Erwinia amylovora ATCC 49946] gi|291553404|emb|CBA20449.1| Flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430] gi|312172105|emb|CBX80362.1| Flagellar biosynthetic protein FliR [Erwinia amylovora ATCC BAA-2158] Length = 261 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 111/233 (47%), Gaps = 3/233 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 LF + RV + IM P LS I +V++ + + VL+P L T ++ F ++ Sbjct: 15 QLFWPLARVLALIMTAPLLSEKSISRKVKIGLGVMITWVLIPSLPPT-NVTLFSVGGFW- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ ++ +G G ++ ++ G VI +GL+ T L L + + Sbjct: 73 -LLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARFLDM 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + +L + H + + +S+ T+PIG E GN F + F+ +RL+ P + Sbjct: 132 LAMLLFLSFNGHLWLISMVAESFQTLPIGGEPLNGNAFMALTESANLIFLNGMRLALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F Sbjct: 192 TLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLF 244 >gi|288573011|ref|ZP_06391368.1| type III secretion system inner membrane R protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568752|gb|EFC90309.1| type III secretion system inner membrane R protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 260 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 15/174 (8%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL- 134 EL +G L LQ G +I T +GL + + + D ++++ +S+IG + +L Sbjct: 78 ELLVGASIAFLASAPFYALQIAGRMIGTRMGLAMVS---VLDPISQSQ-DSIIGQLQILI 133 Query: 135 ALWVI---DFHHQVFYALVKSYGTIPIGQELNFGNIFSS---FVNMLQTTFMIMLRLSSP 188 LW + H + AL++S+ +P+G+ G SS L F++ + + P Sbjct: 134 GLWFFLYWNGHILLVRALMESFRLLPLGE---MGLAVSSDLGLAEWLGKLFVMAFKFAIP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F ++ +I +G L + VPQ+ ++ + P IGLG LFL + + + H Sbjct: 191 FYGALLLADIGLGFLARTVPQMNVFILGLPLKIGLG-LFLLMVVLPMTVDIMHD 243 >gi|315636294|ref|ZP_07891544.1| flagellar biosynthetic protein FliR [Arcobacter butzleri JV22] gi|315479383|gb|EFU70066.1| flagellar biosynthetic protein FliR [Arcobacter butzleri JV22] Length = 249 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 103/239 (43%), Gaps = 13/239 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ + ++ +P + I + VR+ FA SI + PF +D+ +N+ + + Sbjct: 18 LLLARILAFVVFMPVFGHTAINVTVRIAFAFYLSIFIYPF----VDIVTSINQNNFIISL 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ LG V +L+ + ++ G + + L++ + + E + L+ I L Sbjct: 74 ISEITLGLVAAMLVNIIFSAVRIIGEFVEYSTALSMAMMFDPTTNSQEGLVAKLLFWISL 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS-----FVNMLQTTFMIMLRLSSP 188 + + + L KS+ I +G NIFS ++ ++ F + P Sbjct: 134 MLFFQTGMYEMTLVILAKSFTMIHLGS----FNIFSYDGIQLAIDEIKRMFSFAFAFALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 F + ++ G K +P + I+ L +FL L +EI F++ F+ F Sbjct: 190 LFFIGFIMDVYYGYGTKSMPAFSPFIITFQLKFALIFVFLILGMEIFADTFTNYFINKF 248 >gi|207728356|ref|YP_002256750.1| flagellar biosynthetic protein flir [Ralstonia solanacearum MolK2] gi|206591602|emb|CAQ57214.1| flagellar biosynthetic protein flir [Ralstonia solanacearum MolK2] Length = 262 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/210 (19%), Positives = 90/210 (42%), Gaps = 12/210 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV + I + P S + IP +++ F + ++ L P L + V+ Y L ++ Sbjct: 22 RVLAFIAMAPPFSNTEIPTSIKVAFGVVLTVALAPML----PVPQGVSVGSYEGLWITLL 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G G +++ + G ++S IGL T + + + L I + + A Sbjct: 78 QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGRFISLTAITA 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +AL S+ +P+ G + + F + +R++ P + +V Sbjct: 138 FIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAIFALAVRIALPIIAIMMV 197 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGS 225 N++ +L++ + P+ +G+ + Sbjct: 198 VNLAFAVLSRTAQAL------NPFAVGIAA 221 >gi|308173600|ref|YP_003920305.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7] gi|307606464|emb|CBI42835.1| component of the flagellar export machinery [Bacillus amyloliquefaciens DSM 7] gi|328553468|gb|AEB23960.1| flagellar biosynthesis protein FliR [Bacillus amyloliquefaciens TA208] gi|328911741|gb|AEB63337.1| component of the flagellar export machinery [Bacillus amyloliquefaciens LL3] Length = 259 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/236 (21%), Positives = 109/236 (46%), Gaps = 14/236 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAY 68 + L+ R+ + + +P +P R+ FA S++ L ID+ Sbjct: 10 AFLLVFIRISAFFVTVPVFGHRNLPAVHRIGFAFFLSVICFSTLKHAPAIDIGE-----Q 64 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSL 127 Y LV+ E +G GL+ + +Q GS I +G ++ + S ++PL Sbjct: 65 YMLLVIKEAVVGLSLGLIAFMMMAAIQIAGSFIDFQMGFSIANVID-PQSGTQSPLIGQF 123 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNI-FSSFV-NMLQTTFMIMLR 184 + + LL + ++ H+ + + S+ IP+ Q +FGN F F+ F+I + Sbjct: 124 VYTLALLFMLSVNAHYLLLDGIYYSFQYIPLDQAFPSFGNDRFGLFIAKSFNAMFIIAFQ 183 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 +S+P + + ++++G++ + VPQ+ ++ + P I + L +C+++ ++ + Sbjct: 184 MSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMAVMFVIVR 239 >gi|168334563|ref|ZP_02692719.1| flagellar biosynthesis protein FliR [Epulopiscium sp. 'N.t. morphotype B'] Length = 262 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 100/206 (48%), Gaps = 13/206 (6%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFS-IVLLPFLWDTIDLQNFVNRAYYSKL 72 LI R+ + + L P + + +P V A+ + IV TI N YS L Sbjct: 16 LIFVRIVAVLSLFPIILETKVPATVVAMLAIILTMIVFFTIPQGTISYAN--TWLGYSIL 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNL----QTSMGISDSLAETPLNSLI 128 V+ E+ +G V G + ++ L FTG + S GL++ ++G A+ P+ Sbjct: 74 VIKEMLVGMVLGFGVLIFFQVLNFTGQLWSNQGGLSMSQFYDPALG-----AQIPVLGRF 128 Query: 129 GIIGLLALWVIDF-HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 +G ++V+ +H AL+K++ IP+G + +I + ++ + F + +L++ Sbjct: 129 LTLGFSTIFVLSGGYHYFISALIKTFEYIPLGTQFFNPSISITILDAVAIFFELGFKLAT 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIY 213 P L ++ ++ +G+L + VPQ+ ++ Sbjct: 189 PILGTILLIDVGLGILARTVPQMNMF 214 >gi|22124446|ref|NP_667869.1| type III secretion system component [Yersinia pestis KIM 10] gi|45440282|ref|NP_991821.1| putative type III secretion apparatus protein [Yersinia pestis biovar Microtus str. 91001] gi|51594684|ref|YP_068875.1| type III secretion apparatus protein EscT/SsaT/YscT [Yersinia pseudotuberculosis IP 32953] gi|108810000|ref|YP_653916.1| putative type III secretion apparatus protein [Yersinia pestis Antiqua] gi|108813555|ref|YP_649322.1| type III secretion apparatus protein [Yersinia pestis Nepal516] gi|145600945|ref|YP_001165021.1| type III secretion apparatus protein [Yersinia pestis Pestoides F] gi|150260679|ref|ZP_01917407.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|153948893|ref|YP_001402766.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis IP 31758] gi|162419337|ref|YP_001608226.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis Angola] gi|165926709|ref|ZP_02222541.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. F1991016] gi|165936527|ref|ZP_02225095.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. IP275] gi|166010567|ref|ZP_02231465.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. E1979001] gi|166213916|ref|ZP_02239951.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. B42003004] gi|167402194|ref|ZP_02307667.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418924|ref|ZP_02310677.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426142|ref|ZP_02317895.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186893687|ref|YP_001870799.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis PB1/+] gi|218927479|ref|YP_002345354.1| putative type III secretion apparatus protein [Yersinia pestis CO92] gi|229836527|ref|ZP_04456693.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|229840135|ref|ZP_04460294.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842216|ref|ZP_04462371.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904045|ref|ZP_04519158.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|270488970|ref|ZP_06206044.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis KIM D27] gi|294502344|ref|YP_003566406.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] gi|21957233|gb|AAM84120.1|AE013654_9 putative type III secretion system component [Yersinia pestis KIM 10] gi|45435138|gb|AAS60698.1| putative type III secretion apparatus protein [Yersinia pestis biovar Microtus str. 91001] gi|51587966|emb|CAH19569.1| putative type III secretion apparatus protein EscT/SsaT/YscT [Yersinia pseudotuberculosis IP 32953] gi|108777203|gb|ABG19722.1| type III secretion apparatus protein [Yersinia pestis Nepal516] gi|108781913|gb|ABG15971.1| putative type III secretion apparatus protein [Yersinia pestis Antiqua] gi|115346090|emb|CAL18958.1| putative type III secretion apparatus protein [Yersinia pestis CO92] gi|145212641|gb|ABP42048.1| type III secretion apparatus protein [Yersinia pestis Pestoides F] gi|149290087|gb|EDM40164.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|152960388|gb|ABS47849.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis IP 31758] gi|162352152|gb|ABX86100.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis Angola] gi|165915643|gb|EDR34252.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. IP275] gi|165921332|gb|EDR38556.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. F1991016] gi|165990657|gb|EDR42958.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. E1979001] gi|166204891|gb|EDR49371.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. B42003004] gi|166962918|gb|EDR58939.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048375|gb|EDR59783.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054853|gb|EDR64655.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186696713|gb|ACC87342.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis PB1/+] gi|229679815|gb|EEO75918.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|229690526|gb|EEO82580.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696501|gb|EEO86548.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706211|gb|EEO92219.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|262364374|gb|ACY60931.1| putative type III secretion apparatus protein [Yersinia pestis D182038] gi|270337474|gb|EFA48251.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis KIM D27] gi|294352803|gb|ADE63144.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] Length = 264 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 15/152 (9%) Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLAETPLNSLIGI 130 EL +G V G + + + G +I T G + T MG+ SL ++ + Sbjct: 74 TELLIGVVMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVLFTQILTV 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL----S 186 + L++ +QV AL SY ++PIGQ + + + LQT + +M L + Sbjct: 134 LFLIS----GGFNQVLAALYGSYDSLPIGQGIQPA---ADLLLFLQTEWQMMFELCLCFA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P L ++ ++S+GL+N+ Q+ ++F++ P Sbjct: 187 LPALLVMVLADLSLGLINRSARQLNVFFLAMP 218 >gi|310767332|gb|ADP12282.1| flagellar biosynthesis protein FliR [Erwinia sp. Ejp617] Length = 261 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 3/233 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 LF + RV + IM P LS + +V++ + + VL+P L T ++ F ++ Sbjct: 15 QLFWPLARVLALIMTAPLLSEKSVSRKVKIGLGVMITWVLIPSLPPT-NVTLFSVGGFW- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ ++ +G G ++ ++ G VI +GL+ T L L + + Sbjct: 73 -LLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARFLDM 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + +L + H + + S+ T+PIG E GN F + F+ +RL+ P + Sbjct: 132 LAMLLFLSFNGHLWLISMVADSFQTLPIGGEPLNGNAFMALTKAANIIFLNGMRLALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F Sbjct: 192 TLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLF 244 >gi|170026113|ref|YP_001722618.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis YPIII] gi|169752647|gb|ACA70165.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis YPIII] Length = 264 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 15/152 (9%) Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLAETPLNSLIGI 130 EL +G V G + + + G +I T G + T MG+ SL ++ + Sbjct: 74 TELLIGVVMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVLFTQILTV 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL----S 186 + L++ +QV AL SY ++PIGQ + + + LQT + +M L + Sbjct: 134 LFLIS----GGFNQVLAALYGSYDSLPIGQGIQPA---ADLLLFLQTEWQMMFELCLCFA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P L ++ ++S+GL+N+ Q+ ++F++ P Sbjct: 187 LPALLVMVLADLSLGLINRSARQLNVFFLAMP 218 >gi|289208349|ref|YP_003460415.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. K90mix] gi|288943980|gb|ADC71679.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. K90mix] Length = 253 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/237 (18%), Positives = 108/237 (45%), Gaps = 14/237 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL------LPFLWDTIDLQNFVNRAYYS 70 R+G+ ++++P + VR+ FA+ +I + LP + D I ++ V + Sbjct: 16 ARIGAMLLVMPVFGGDQLTATVRILFALVLAIFVAMQGPALPAV-DPISIEGVVVTVH-- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 ++ +G V G ++++ L G VI+ ++GL + + + + ++++ I Sbjct: 73 -----QILIGLVMGFILQMVFSALTQAGEVIALSMGLGFASIVDPAQGVQVPVVSTIFVI 127 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L ++ H L+ S+ T+P+ +S + F + ++ P + Sbjct: 128 MATLIFLAMNGHLIALELLLTSFETLPVAPSGLDAEALASLIAFGSVMFQGAVLVAIPAV 187 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ N+S+G++ + PQ+ I+ + P +I +G + L L++ + + GF Sbjct: 188 ASLLLVNLSMGVITRASPQLNIFAVGFPMMILMGFILLMLTMPGLPERLGDLLFDGF 244 >gi|89072286|ref|ZP_01158865.1| putative flagellar biosynthetic protein FliR [Photobacterium sp. SKA34] gi|89051818|gb|EAR57270.1| putative flagellar biosynthetic protein FliR [Photobacterium sp. SKA34] Length = 258 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 7/226 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+G+ ++ +P + IP+ VR A+A S + P + T DL + + + Sbjct: 21 RIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTDLLSLSALMLAFEQAIW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 + G + L + TL G +IS +GL + + ++ L + + L Sbjct: 81 GVLFGLIIHFLFSIMTL----LGQIISLQMGLGMAIMNDPVNGVSVAILGRMFLLFSTLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 +D H V LV+S+ + P+G L ++ + + F L ++ P + ++ Sbjct: 137 FLALDGHLLVIDILVQSFTSWPVGSGLALSSV-KQILTLFGWMFSSALAIALPAIVSMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 196 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPTRYAE 241 >gi|115377838|ref|ZP_01465026.1| flagellar biosynthesis protein FliR, putative [Stigmatella aurantiaca DW4/3-1] gi|115365170|gb|EAU64217.1| flagellar biosynthesis protein FliR, putative [Stigmatella aurantiaca DW4/3-1] Length = 222 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/185 (20%), Positives = 85/185 (45%), Gaps = 12/185 (6%) Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLAETPL 124 Y L++ E+F+G ++ + + G+++ T G N +G SL Sbjct: 29 YIALLLKEVFIGVSLAFIVNIIFDAARVAGTLVDTMAGSNNAQLYVPQLGQQVSL----F 84 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF----M 180 +SL + ++ +D HH V AL S+ +P+ F +F ++ F Sbjct: 85 SSLKVQLSVVLFLTLDGHHIVISALADSFAIVPLDSFPKFSKGTWAFFEVISRAFANLLA 144 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I L L++P + + ++++G +N++ P + ++FI+ + L L++ +++ +F Sbjct: 145 ISLSLAAPQMLSAFLTDLAMGAVNRVAPNLQVFFIAMAIKPMVSVLIAALALHMLIGRFQ 204 Query: 241 HSFLY 245 F++ Sbjct: 205 SEFVH 209 >gi|57238051|ref|YP_179300.1| flagellar biosynthesis protein FliR [Campylobacter jejuni RM1221] gi|148926184|ref|ZP_01809869.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|57166855|gb|AAW35634.1| flagellar biosynthetic protein FliR [Campylobacter jejuni RM1221] gi|145845355|gb|EDK22448.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315058611|gb|ADT72940.1| Flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni S3] Length = 255 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 96/212 (45%), Gaps = 6/212 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ I+ P S + IPM ++ + ++ L P L++ +++ + Sbjct: 17 LLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPL----ARLESLHLDSFFVLQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + GL++++ + G I+ +G + + + S + ++ ++ L Sbjct: 73 ISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQILNLLAL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFF 192 + D HH + L S G I +G N+ ++NM + F+I +S P L Sbjct: 133 MFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMH-YLNMGMFNIFIIGFTMSFPILGI 191 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ GLL K +PQ + I P I LG Sbjct: 192 SLLADVIFGLLMKTMPQFNLLVIGYPIKIALG 223 >gi|238758101|ref|ZP_04619281.1| Flagellar biosynthetic protein fliR [Yersinia aldovae ATCC 35236] gi|238703639|gb|EEP96176.1| Flagellar biosynthetic protein fliR [Yersinia aldovae ATCC 35236] Length = 260 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 52/104 (50%) Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199 D H + L S+ TIPI E GN F + + FM L L+ P + + N++ Sbjct: 141 DGHLWLISLLADSFHTIPIQLEPLNGNGFLALTQVGSLIFMSGLMLALPMITLLLTLNMA 200 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +G+LN++ PQ+ ++ I P + +G + + L + ++ H F Sbjct: 201 LGMLNRMTPQLSVFVIGFPLTLTIGIISMGLMMPLLAPFAEHLF 244 >gi|167464150|ref|ZP_02329239.1| flagellar biosynthesis protein FliR [Paenibacillus larvae subsp. larvae BRL-230010] Length = 259 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 11/212 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN-RAYYSKL 72 L+ CR+ + +++P S +P Q F + S+V+ ++ + + N V Y Sbjct: 12 LVFCRITAFFVVVPTFSSRNVPSQ----FKIGLSLVITLIVFTALGMNNPVTMDGTYLLA 67 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G G + ++ +Q GS I +G + + + L + +I Sbjct: 68 IFREILVGITLGFVAYLFFTAVQIAGSFIDIQMGFGIANVIDPMTGASAPILGNFKYMIA 127 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS-----FVNMLQTTFMIMLRLSS 187 L + HH + A++ SY +P+ E+ F +F V T F + +L++ Sbjct: 128 TLLFLSFNGHHLLLQAIMNSYDWVPMTNEV-FARVFEGQVSEWIVRSFTTMFGLAFQLAA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPY 219 P + ++ +GLL ++ PQ I+ + P+ Sbjct: 187 PIAAALFLTDLGLGLLTRVAPQFNIFVVGAPF 218 >gi|88858096|ref|ZP_01132738.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] gi|88819713|gb|EAR29526.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] Length = 259 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/242 (21%), Positives = 106/242 (43%), Gaps = 16/242 (6%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M L + R+ + +M++ G+ + +P +++ A+ ++V++P L F N Sbjct: 12 MADFLLPLTRISAMLMVMVGIGVRTVPTRIKAALAVMVTLVVIPVL----PPAEFTNLFS 67 Query: 69 YSKLVMV--ELFLGCVHG----LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 + +++V + +G G L++ + + G +++ GL T + ++ Sbjct: 68 FEMVLVVLQQTLIGVAMGFASVLMLNTFVMA----GQLLAMQSGLGFATMIDPTNGQNVP 123 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMI 181 + I+ L W D H + LV S+ TIPI G + N F F Sbjct: 124 AVGQFYLILATLLFWTYDGHLIMVKMLVLSFTTIPIDGNWWHVAN-FREVAVWGGWLFAT 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L LS L ++ +IS G++ + PQ+ I+ I P+ + +G + + ++ V QF Sbjct: 183 ALVLSLAPLTAMLITSISFGVMTRAAPQLNIFSIGFPFTLMMGLIIIWATMGNFVVQFDF 242 Query: 242 SF 243 + Sbjct: 243 QW 244 >gi|315648121|ref|ZP_07901222.1| flagellar biosynthetic protein FliR [Paenibacillus vortex V453] gi|315276767|gb|EFU40110.1| flagellar biosynthetic protein FliR [Paenibacillus vortex V453] Length = 262 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 11/206 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFS-IVLLPFLWDTIDLQNFVNRAYYSKL 72 LI CR+ S ++ P + +P ++ + + IV F + Q+ + Sbjct: 13 LIFCRITSFFVISPVFTSRSVPTSYKIALSAIIALIVYFSFGLGEVVPQDLSYVILIVQE 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGII 131 V+V L LG L++ V +Q G++I IG ++ + A TPL + + Sbjct: 73 VLVGLLLGFTAYLIMAV----VQTAGALIDIQIGFSMANVIDPFTG-ASTPLIGNFKYYL 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE----LNFGNIFSSFVNMLQTTFMIMLRLSS 187 LL ++ HH + A++ SY IPI + ++ GN+ V +F++ L++++ Sbjct: 128 ALLVFLSMNGHHYLLDAIMYSYDWIPITGDVFGKIHDGNVTDFLVRTFSHSFVLALQMAA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIY 213 P + + ++ +G L + PQ ++ Sbjct: 188 PLVAALFLTDVGLGFLARTAPQFNVF 213 >gi|291484191|dbj|BAI85266.1| hypothetical protein BSNT_02670 [Bacillus subtilis subsp. natto BEST195] Length = 194 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLL 134 E +G GL+ + +Q GS I +G ++ + + A++PL I + LL Sbjct: 7 EALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVID-PQTGAQSPLIGQFIYTMALL 65 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGN-IFSSFV-NMLQTTFMIMLRLSSPFLF 191 + ++ HH + + S+ I + Q NFG+ F+ F+ F+I ++S+P + Sbjct: 66 FMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQMSAPVVA 125 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG--SLFLCLSIEIIVYQ 238 + ++++G++ + VPQ+ ++ + P I + L +C+S+ +V + Sbjct: 126 SLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVR 174 >gi|317153079|ref|YP_004121127.1| flagellar biosynthetic protein FliR [Desulfovibrio aespoeensis Aspo-2] gi|316943330|gb|ADU62381.1| flagellar biosynthetic protein FliR [Desulfovibrio aespoeensis Aspo-2] Length = 261 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 1/210 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M+S FL + R+ + L+P + IP V+ + S+ + P L + N Sbjct: 11 MLSFFLTLFRISVVLFLMPFFGGNSIPTLVKGALVLVLSLAVWPQLSFPGSMLP-ANGLD 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + + E+ LG + GL + +QF G +I +G + + + + Sbjct: 70 ITIMFLGEVLLGLILGLTVNFLFGAIQFGGQIIGFQMGFAMVSVVDPISGTTNAVTAHFL 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L V++ H Q+ AL S+ IP G L ++ + F+++ F + +R+++P Sbjct: 130 YMCTMLTFLVLNGHLQLINALGMSFQYIPPGGLLITPSLATQFLSLSAIMFTLAIRIAAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 + + ++++ L+++ PQ+ + + P Sbjct: 190 VMAALFLVDLALALISRAAPQMHVLILGFP 219 >gi|188534132|ref|YP_001907929.1| flagellar biosynthesis protein FliR [Erwinia tasmaniensis Et1/99] gi|188029174|emb|CAO97046.1| Flagellar biosynthesis protein [Erwinia tasmaniensis Et1/99] Length = 263 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 3/233 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 LF + RV + IM P LS I +V++ + + VL+P L T + F ++ Sbjct: 15 QLFWPLARVLALIMTAPLLSEKAISRKVKIGLGVMITWVLVPSLPPT-HVTLFSVGGFW- 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ ++ +G G ++ ++ G VI +GL+ T L L + + Sbjct: 73 -LLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARFLDM 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + +L + H + + S+ T+PIG E GN F + F+ +RL+ P + Sbjct: 132 LAMLLFLSFNGHLWLISMVADSFHTLPIGAEPLNGNAFMALTKAANLIFLNGMRLALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F Sbjct: 192 TLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSIGMIFIILMMPLLAPFCEHLF 244 >gi|90406807|ref|ZP_01214999.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] gi|90312044|gb|EAS40137.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] Length = 264 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 47/241 (19%), Positives = 113/241 (46%), Gaps = 23/241 (9%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL---WDTIDLQNFVNRAYYSKLV 73 CR+ + +M++ + P+++RL +A+A +I +LP L I+L + + + + Sbjct: 20 CRIAAMLMVMVAVGSRTTPVRIRLFYALAITIAVLPVLPIVQTNIELFSLGSAFIILQQL 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS----LIG 129 ++ + +G + +++ + + G +I+ +QTS+G + S+A+ P+N ++G Sbjct: 80 LIGIAIGTISVFVVQTFVVA----GQIIA------MQTSLGFA-SMAD-PMNGQSSPVVG 127 Query: 130 ----IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 ++ L + +D H + +++S+ T+P+ + F L Sbjct: 128 QFYVLLVTLLFFGVDGHLLMIEFIIRSFDTLPVSMHGLLATDYKKLAGWFSVMFSAALAF 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S + ++ N+S G++ K PQ+ I+ + + G L +++ + F + +L Sbjct: 188 SLASMVAMLLVNLSFGIMTKAAPQLNIFSLGFSISMVFGLFVLWVTLVNVPAHFENQWLR 247 Query: 246 G 246 G Sbjct: 248 G 248 >gi|194292001|ref|YP_002007908.1| sctt: non flagellar t3S system conserved inner membrane protein. flir/mope/spar family. [Cupriavidus taiwanensis LMG 19424] gi|193225905|emb|CAQ71852.1| SctT: non flagellar T3S system conserved inner membrane protein. fliR/mopE/spaR family [Cupriavidus taiwanensis LMG 19424] Length = 271 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 51/233 (21%), Positives = 107/233 (45%), Gaps = 9/233 (3%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++M + +++ R+ + +LP LS IP R +A ++ + P IDL + V Sbjct: 21 VIMPIVMVMPRLLTAFTVLPFLSQQAIPGVARNGIVLAIALFVSP--GARIDL-DAVAGG 77 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L+ E F+G + G+ ++ + LQ G +I G T + P+ +L Sbjct: 78 LWLVLIFKEAFIGLLLGMAFGLFFVALQMIGELIDFQTGSGNATFFDPVTQQEDGPMENL 137 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPI---GQELNFGNIFSSFVNMLQTT-FMIML 183 + G+ + + +V+S+ P+ G E++ ++ F N+ T F ++ Sbjct: 138 LSHFGIALFAALGGFIAMTGVIVESFAFWPVMSFGPEMSLASM--GFANLYAGTLFSWVV 195 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +L++P L ++ + L+ + VPQ ++ + P I + L L L + ++V Sbjct: 196 KLAAPILLLLVIVELGFALIARFVPQFDVFQFAQPVKISVAFLMLVLMLAVMV 248 >gi|119775420|ref|YP_928160.1| flagellar biosynthesis protein FliR [Shewanella amazonensis SB2B] gi|119767920|gb|ABM00491.1| flagellar biosynthetic protein FliR [Shewanella amazonensis SB2B] Length = 262 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 108/233 (46%), Gaps = 20/233 (8%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 R+ + M++P + P++VRL ++A + + P L + F + + ++ V++ Sbjct: 21 RISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPMPQGELFALSSVFISAQQVLI 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGIS-----DSLAETP-LNSLIG 129 + +G V ++++++ L TG +I +QTS+G S S +TP L + Sbjct: 81 GVAMGLVALMMLQIFVL----TGQII------GMQTSLGFSFMVDPGSGQQTPVLGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L +D H + LV S+ T+P+ + N + S F L +S Sbjct: 131 LLATLIFLAVDGHLTMIRMLVMSFDTLPVSMTGITLAN-YHSLALWGSYMFGAALTMSLS 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P ++ G L L++ ++ F Sbjct: 190 AIVALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSHFGE 242 >gi|15605293|ref|NP_220079.1| Yop proteins translocation protein T [Chlamydia trachomatis D/UW-3/CX] gi|76789301|ref|YP_328387.1| SctT [Chlamydia trachomatis A/HAR-13] gi|166154779|ref|YP_001654897.1| type III secretion system, membrane protein [Chlamydia trachomatis 434/Bu] gi|166155654|ref|YP_001653909.1| type III secretion system, membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802993|ref|YP_002888187.1| type III secretion system, membrane protein [Chlamydia trachomatis B/Jali20/OT] gi|237804915|ref|YP_002889069.1| type III secretion system, membrane protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311383|ref|ZP_05353953.1| type III secretion system, membrane protein [Chlamydia trachomatis 6276] gi|255317684|ref|ZP_05358930.1| type III secretion system, membrane protein [Chlamydia trachomatis 6276s] gi|301336054|ref|ZP_07224298.1| type III secretion system, membrane protein [Chlamydia trachomatis L2tet1] gi|3329005|gb|AAC68166.1| Yop proteins translocation protein T [Chlamydia trachomatis D/UW-3/CX] gi|76167831|gb|AAX50839.1| SctT [Chlamydia trachomatis A/HAR-13] gi|165930767|emb|CAP04264.1| type III secretion system, membrane protein [Chlamydia trachomatis 434/Bu] gi|165931642|emb|CAP07218.1| type III secretion system, membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273215|emb|CAX10128.1| type III secretion system, membrane protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274227|emb|CAX11021.1| type III secretion system, membrane protein [Chlamydia trachomatis B/Jali20/OT] gi|296436098|gb|ADH18272.1| type III secretion system, membrane protein [Chlamydia trachomatis G/9768] gi|296437026|gb|ADH19196.1| type III secretion system, membrane protein [Chlamydia trachomatis G/11222] gi|296437958|gb|ADH20119.1| type III secretion system, membrane protein [Chlamydia trachomatis G/11074] gi|297140459|gb|ADH97217.1| type III secretion system, membrane protein [Chlamydia trachomatis G/9301] gi|297748694|gb|ADI51240.1| type III secretion inner membrane protein SctT [Chlamydia trachomatis D-EC] gi|297749574|gb|ADI52252.1| type III secretion inner membrane protein sctT [Chlamydia trachomatis D-LC] Length = 289 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/235 (19%), Positives = 106/235 (45%), Gaps = 7/235 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + + L+ Sbjct: 33 LLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYILL 92 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN-LQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + G L Q GS I+ G+ L+ + + +P Sbjct: 93 IKEILIGVLIGFLFSFPFYAAQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHYFV 152 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLRLS 186 + W+ H + L++S IP+ ++ + + M Q ++ ++LS Sbjct: 153 TIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMCQLCLIMTIQLS 212 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 213 APAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 267 >gi|148546752|ref|YP_001266854.1| flagellar biosynthesis protein FliR [Pseudomonas putida F1] gi|148510810|gb|ABQ77670.1| flagellar biosynthetic protein FliR [Pseudomonas putida F1] Length = 258 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 102/212 (48%), Gaps = 13/212 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 RV + +M +P +P +VRL A+A ++V++P L +D + L+ + L Sbjct: 22 RVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRGLL-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G + GL +++ G +++ +G+ + + ++ + T ++ + ++ Sbjct: 75 CAEQIIVGALFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPANGVNVTVISQFMTMLV 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + +++ H VF L +S+ T+P+G L N F + F L L P + Sbjct: 135 SVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLILPVIAA 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +V NI+ G++ + PQ+ I+ I P + +G Sbjct: 194 LLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMG 225 >gi|92114090|ref|YP_574018.1| flagellar biosynthetic protein FliR [Chromohalobacter salexigens DSM 3043] gi|91797180|gb|ABE59319.1| flagellar biosynthetic protein FliR [Chromohalobacter salexigens DSM 3043] Length = 261 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT--SMGISDSLAETPLNSLIGIIGL 133 E+ +G G+++RV +Q G I +GL T + G+ +S+ L+ + +I L Sbjct: 78 EMLIGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVGNSMV---LSRIFQMITL 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L ++ H L S+ T+P+G + + G + + + + T+ ++M + P + Sbjct: 135 LMFLALNGHLIALEILANSFQTLPVGGPRVDGSAGEVIARWGGEIFTSGVLM---ALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 ++ N+++G+LN+ PQ+ I+ I P + G + L Sbjct: 192 VSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLL 229 >gi|242308811|ref|ZP_04807966.1| flagellar biosynthesis protein FliR [Helicobacter pullorum MIT 98-5489] gi|239524650|gb|EEQ64516.1| flagellar biosynthesis protein FliR [Helicobacter pullorum MIT 98-5489] Length = 242 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 2/211 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R + P I Q++ F +I+ +P L T+ N + + Sbjct: 17 LLLLRFAGIVAFFPFFENQLINTQIKGIFIFWLTILFIP-LVTTLPPTNMTILEFIIAGI 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ LG + +++ + F G +IS A+GL + + + + L+ ++ L Sbjct: 76 -TEIMLGFLASFALQIVFGMISFGGELISFAMGLTIANAYDPVTGAQKPIVGQLLSLLAL 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + +D+HH Y + S IP+G + N + F+I L +S P + Sbjct: 135 MIVLALDYHHLFLYFVADSIKEIPLGGFIYSNNYILYTIKAFSNLFLIGLTMSFPIIALI 194 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ +I G++ K PQ + I P I + Sbjct: 195 LLSDIIFGMIMKAHPQFNLLAIGFPVKIAVA 225 >gi|283954736|ref|ZP_06372252.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 414] gi|283793576|gb|EFC32329.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 414] Length = 255 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 8/213 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ I+ P S + IPM ++ + ++ L P L++ +++ + Sbjct: 17 LLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPL----ARLESLHLDSFFVLQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS-LIGIIG 132 + E+ G + GL++++ + G I+ +G + + + +S P+ S ++ ++ Sbjct: 73 ISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILD-PNSGTSMPITSQILNLLA 131 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLF 191 L+ D HH + L S G I +G N+ ++NM + F+I +S P L Sbjct: 132 LMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMH-YLNMGMFNIFIIGFTMSFPILG 190 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ GLL K +PQ + I P I LG Sbjct: 191 ISLLADVIFGLLMKTMPQFNLLVIGYPIKIALG 223 >gi|88704275|ref|ZP_01101989.1| flagellar biosynthetic protein FliR [Congregibacter litoralis KT71] gi|88701326|gb|EAQ98431.1| flagellar biosynthetic protein FliR [Congregibacter litoralis KT71] Length = 259 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 82/161 (50%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L + E+ +G V G ++++ + G ++ ++GL S+ + + ++ L ++ Sbjct: 76 LALREVAIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMSVDPQNGVQVPVVSQLNVVL 135 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L ID H + A+V S+G +P+G ++ +FS+ ++ F L L+ P L Sbjct: 136 ATLLFLAIDGHLILISAVVDSFGLVPVGSAISPEGMFSNVASLGTQLFASALLLALPTLT 195 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++ N++ G++ + PQ+ I+ + P I G +F+ L++ Sbjct: 196 AILMINVAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLAL 236 >gi|239907022|ref|YP_002953763.1| flagellar biosynthetic protein FliR [Desulfovibrio magneticus RS-1] gi|239796888|dbj|BAH75877.1| flagellar biosynthetic protein FliR [Desulfovibrio magneticus RS-1] Length = 259 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/238 (19%), Positives = 108/238 (45%), Gaps = 16/238 (6%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L R+ + +LP + IP V+ F + S+ L P L F A + Sbjct: 13 SFLLTFMRLSVVVFMLPFYGATLIPNVVKASFCLVLSMALWPRL-------AFAGTALPA 65 Query: 71 K------LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + E+ +G + +L+R+ Q G+++ ++G +L S+ +E+ L Sbjct: 66 SPWTIGLMFLGEVLIGLMLDILVRLLFSAAQAAGAIMGFSMGFSLMNSVDPMTGASESGL 125 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 L+ + + ++ H + AL +S+ +P G L + + F++ ++ Sbjct: 126 GHLMSQVATMLFLCLNGHLFLLSALAQSFEMVPPGGLLINAAVGEHLIVFTGQLFVMAIK 185 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL---SIEIIVYQF 239 +++P L + ++++ L+ + PQ+ + FI P + +G LF+ + ++ +++ F Sbjct: 186 IAAPILASIFLVDLALALVARAAPQMNVLFIGFPLKVSVGFLFMTMVFAAMTVVIENF 243 >gi|325273554|ref|ZP_08139784.1| flagellar biosynthesis protein FliR [Pseudomonas sp. TJI-51] gi|324101314|gb|EGB98930.1| flagellar biosynthesis protein FliR [Pseudomonas sp. TJI-51] Length = 258 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 101/212 (47%), Gaps = 13/212 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-----WDTIDLQNFVNRAYYSKL 72 RV + +M +P +P +VRL A+A ++V++P L +D + L+ + L Sbjct: 22 RVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRGLL-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G + GL +++ G +++ +G+ + + + + T ++ + ++ Sbjct: 75 CAEQIIVGTLFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPGNGVNVTVISQFMTMLV 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + +++ H VF L +S+ T+P+G L N F + F L L P + Sbjct: 135 SVLFLLMNGHLVVFEVLTESFSTLPVGNALVV-NHFWELAGRMGWVFGAGLLLILPVIAA 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +V NI+ G++ + PQ+ I+ I P + +G Sbjct: 194 LLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMG 225 >gi|51596027|ref|YP_070218.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis IP 32953] gi|153948291|ref|YP_001401273.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis IP 31758] gi|170024629|ref|YP_001721134.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis YPIII] gi|186895132|ref|YP_001872244.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis PB1/+] gi|51589309|emb|CAH20930.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP 32953] gi|152959786|gb|ABS47247.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP 31758] gi|169751163|gb|ACA68681.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis YPIII] gi|186698158|gb|ACC88787.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis PB1/+] Length = 260 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 5/232 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS I +V++ + + ++ P L +++ F + A + + Sbjct: 17 FWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSL-PPVNIPLFSSAALW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G+ ++ ++ +G VI +GL+ T S L+ L+ I+ Sbjct: 74 AIQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLSRLLNILV 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L D H + L S+ T+PI LN GN F + FM L L+ P + Sbjct: 134 TLLFLSFDGHLWLISLLADSFHTLPIQFAPLN-GNGFLTLAQSGSMIFMNGLMLALPLIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F Sbjct: 193 LLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLF 244 >gi|22126371|ref|NP_669794.1| flagellar biosynthesis protein FliR [Yersinia pestis KIM 10] gi|45441392|ref|NP_992931.1| flagellar biosynthesis protein FliR [Yersinia pestis biovar Microtus str. 91001] gi|108812466|ref|YP_648233.1| flagellar biosynthesis protein FliR [Yersinia pestis Nepal516] gi|149366234|ref|ZP_01888269.1| flagellar biosynthetic protein FliR [Yersinia pestis CA88-4125] gi|162100178|ref|YP_651106.2| flagellar biosynthesis protein FliR [Yersinia pestis Antiqua] gi|165926001|ref|ZP_02221833.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. F1991016] gi|165938779|ref|ZP_02227334.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. IP275] gi|166010957|ref|ZP_02231855.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. E1979001] gi|166210878|ref|ZP_02236913.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. B42003004] gi|167401187|ref|ZP_02306690.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420441|ref|ZP_02312194.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425768|ref|ZP_02317521.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467508|ref|ZP_02332212.1| flagellar biosynthesis protein FliR [Yersinia pestis FV-1] gi|218928939|ref|YP_002346814.1| flagellar biosynthesis protein FliR [Yersinia pestis CO92] gi|229896263|ref|ZP_04511433.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides A] gi|229897200|ref|ZP_04512356.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897927|ref|ZP_04513078.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. India 195] gi|229902842|ref|ZP_04517959.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516] gi|270486629|ref|ZP_06203703.1| flagellar biosynthetic protein FliR [Yersinia pestis KIM D27] gi|294504014|ref|YP_003568076.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|21959356|gb|AAM86045.1|AE013852_7 flagellar biosynthesis protein [Yersinia pestis KIM 10] gi|45436252|gb|AAS61808.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Microtus str. 91001] gi|108776114|gb|ABG18633.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516] gi|115347550|emb|CAL20459.1| flagellar biosynthetic protein FliR [Yersinia pestis CO92] gi|149292647|gb|EDM42721.1| flagellar biosynthetic protein FliR [Yersinia pestis CA88-4125] gi|165913393|gb|EDR32015.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. IP275] gi|165922205|gb|EDR39382.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. F1991016] gi|165990301|gb|EDR42602.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. E1979001] gi|166208058|gb|EDR52538.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. B42003004] gi|166962136|gb|EDR58157.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049576|gb|EDR60984.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055167|gb|EDR64964.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680289|gb|EEO76388.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516] gi|229688968|gb|EEO81033.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. India 195] gi|229693537|gb|EEO83586.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701186|gb|EEO89215.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides A] gi|262361800|gb|ACY58521.1| flagellar biosynthesis protein [Yersinia pestis D106004] gi|262366064|gb|ACY62621.1| flagellar biosynthesis protein [Yersinia pestis D182038] gi|270335133|gb|EFA45910.1| flagellar biosynthetic protein FliR [Yersinia pestis KIM D27] gi|294354473|gb|ADE64814.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|320015444|gb|ADV99015.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 260 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 5/232 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS I +V++ + + ++ P L +++ F + A + + Sbjct: 17 FWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSL-PPVNIPLFSSAALW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G+ ++ ++ +G VI +GL+ T S L+ L+ I+ Sbjct: 74 AIQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLSRLLNILV 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L D H + L S+ T+PI LN GN F + FM L L+ P + Sbjct: 134 TLLFLSFDGHLWLISLLADSFHTLPIQFAPLN-GNGFLTLAQSGSMIFMNGLMLALPLIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F Sbjct: 193 LLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLF 244 >gi|145598594|ref|YP_001162670.1| flagellar biosynthesis protein FliR [Yersinia pestis Pestoides F] gi|108779103|gb|ABG13161.1| flagellar biosynthetic protein FliR [Yersinia pestis Antiqua] gi|145210290|gb|ABP39697.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides F] Length = 284 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 5/232 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS I +V++ + + ++ P L +++ F + A + + Sbjct: 41 FWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSL-PPVNIPLFSSAALW--V 97 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G+ ++ ++ +G VI +GL+ T S L+ L+ I+ Sbjct: 98 AIQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLSRLLNILV 157 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L D H + L S+ T+PI LN GN F + FM L L+ P + Sbjct: 158 TLLFLSFDGHLWLISLLADSFHTLPIQFAPLN-GNGFLTLAQSGSMIFMNGLMLALPLIT 216 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F Sbjct: 217 LLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLF 268 >gi|332284030|ref|YP_004415941.1| flagellar biosynthetic protein FliR [Pusillimonas sp. T7-7] gi|330427983|gb|AEC19317.1| flagellar biosynthetic protein FliR [Pusillimonas sp. T7-7] Length = 262 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/207 (19%), Positives = 96/207 (46%), Gaps = 14/207 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV--MV 75 R+ + I P L S IP++ ++ FA ++ + P L D + A ++ L + Sbjct: 22 RILALIGAAPLLGESSIPIRAKVGFAALVTVAIAPAL----DPMPDIPTASFAGLWIGLQ 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G GL++R+ +Q G I +GL+ + + L ++ ++ L Sbjct: 78 QVLIGMALGLVMRIVFAAVQTAGEFIGLQMGLSFASFFDPATGANTAVLARIMNVVATLL 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPI---GQELN-FGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 ++ H + +++S+ +P+ G + N +G +F ++ + M+ L P + Sbjct: 138 FLALNGHLMMLAGIMRSFDVLPVRVGGLDPNGWGVLFEWSSEVMVSGMMLAL----PLII 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTP 218 + N+++G+LN+ Q+ ++ + P Sbjct: 194 VLLTINLALGILNRTAQQLSVFAVGFP 220 >gi|1066865|gb|AAB81321.1| fliR [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 264 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 17 FWPLLRVRALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 AMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|86150984|ref|ZP_01069200.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 260.94] gi|315124645|ref|YP_004066649.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85842154|gb|EAQ59400.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 260.94] gi|315018367|gb|ADT66460.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 255 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 97/212 (45%), Gaps = 6/212 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ I+ P S + IPM ++ + ++ L P L++ +++ + Sbjct: 17 LLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPL----ARLESLHLDSFFVLQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + GL++++ + G I+ +G + + + S + + ++ ++ L Sbjct: 73 ISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQILNLLAL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFF 192 + D HH + L S G I +G N+ ++NM + F+I +S P L Sbjct: 133 MFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMH-YLNMGMFNIFIIGFTMSFPILGI 191 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ GLL K +PQ + I P I LG Sbjct: 192 SLLADVIFGLLMKTMPQFNLLVIGYPIKIVLG 223 >gi|329901239|ref|ZP_08272764.1| Flagellar biosynthesis protein FliR [Oxalobacteraceae bacterium IMCC9480] gi|327549171|gb|EGF33763.1| Flagellar biosynthesis protein FliR [Oxalobacteraceae bacterium IMCC9480] Length = 258 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/213 (19%), Positives = 93/213 (43%), Gaps = 12/213 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ I + P + +P ++++ + ++++ P + L+ + + + Sbjct: 21 TRILGLIAVAPVFGNASVPRRIKVGLGILIAMIVAPLVQVPSGLEPMSMQGLLILVQQL- 79 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT-----SMGISDSLAETPLNSLIGII 131 +G G +R+ ++ G V S +GL T S G S+++++ + +I Sbjct: 80 -LIGIAMGFSMRIIFSAVEMAGEVASMTMGLGFATFFDPQSRGRSNAVSQ-----FLSLI 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + H + LV S+ T+PI GNI V F L+L+ P + Sbjct: 134 VLMVYLAANVHLALLSTLVDSFTTMPITVGPLAGNIAEQVVRWASRLFSAGLQLALPIVA 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ N+++G+L + P + ++ I P + +G Sbjct: 194 ALLITNVALGILTRAAPSLNLFGIGFPITLTIG 226 >gi|285018168|ref|YP_003375879.1| flagellar biosynthetic protein flir [Xanthomonas albilineans GPE PC73] gi|283473386|emb|CBA15891.1| probable flagellar biosynthetic protein flir [Xanthomonas albilineans] Length = 263 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 23/224 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ +M++P + IP ++R+ A ++ L P L D F S V EL Sbjct: 27 RIGAMLMVMPLVGTRAIPARIRVILAATLAMALAPLLPPVPDWNGFDATVVLS--VAREL 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL---- 133 +G G ++R+ G +IS + GL ++D L +NS G+IG Sbjct: 85 AVGASMGFMLRMIFEAGAMAGEMISQSTGLGFAQ---MADPL--RGVNS--GVIGQWFYL 137 Query: 134 ---LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR----LS 186 L + + H V LV SY +PIG L + + + FM M+R L+ Sbjct: 138 AFGLLFFTANGHLAVVALLVDSYKALPIGSALPDAQ---AMITVAPDFFMSMMRGALTLA 194 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 P + + N++ G L K P + I P + LG L + Sbjct: 195 LPVIVAMLAVNLAFGALAKAAPALNPIQIGLPVAMVLGLALLAI 238 >gi|77918768|ref|YP_356583.1| flagellar biosynthetic protein FliR [Pelobacter carbinolicus DSM 2380] gi|77544851|gb|ABA88413.1| flagellar biosynthetic protein FliR [Pelobacter carbinolicus DSM 2380] Length = 258 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 44/231 (19%), Positives = 98/231 (42%), Gaps = 3/231 (1%) Query: 15 IVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 +VC RV S LP + P+++R+ ++ ++V+ P L + + L Sbjct: 15 LVCAARVTSLFSALPIFGSAQTPVRIRIALSVTIALVVYPLLPELLPATPLTPIGL-GIL 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E +G + G + R+ + ++F GS+I +G + ++ + Sbjct: 74 IAQETMVGLMIGFIARLVFIAVEFGGSIIGYQMGFAAANVFDPQSQHQVSLISQFQNVFA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L D HH + SY +P G G + F + ++ S+P L Sbjct: 134 ILLFLAFDVHHLFLRLIADSYRLLPAGDAKLGGEAVLFLSRLTGEMFTLAVKFSAPVLIV 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ + +G+++++ Q+ + +S P IG+ L + L+++++ F Sbjct: 194 LLLSGLVLGIMSRMFQQLNAFMLSFPINIGVSFLSIGLTMQLLAVMLQREF 244 >gi|238755317|ref|ZP_04616660.1| Flagellar biosynthetic protein fliR [Yersinia ruckeri ATCC 29473] gi|238706453|gb|EEP98827.1| Flagellar biosynthetic protein fliR [Yersinia ruckeri ATCC 29473] gi|328496287|gb|AEB21291.1| FliR [Yersinia ruckeri] Length = 260 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 5/232 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P L+ I +V++ A+ +I++ P L I + F A + + Sbjct: 17 FWPLVRVLALISTAPVLNEKSINRKVKVGLAVMITILIAPSL-PPIAIPVFSVGAIW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 +M ++ +G GL ++ ++ G +I +GL+ T S L L+ ++ Sbjct: 74 LMQQVLIGIAIGLTMQFAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVLARLLNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L ++ H + L S+ T+PI LN G F + + F+ L L+ P + Sbjct: 134 MLLFLSLNGHLWMISMLADSFHTLPIQFAPLNGGG-FRALTEIGSLIFLSGLMLALPMIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++G+LN++ PQ+ ++ I P + +G L L L + + H F Sbjct: 193 ILLTLNMALGMLNRMTPQLSVFVIGFPLTLTIGMLTLGLIMPALAPYCEHLF 244 >gi|254254349|ref|ZP_04947666.1| Type III secretory pathway component EscT [Burkholderia dolosa AUO158] gi|124898994|gb|EAY70837.1| Type III secretory pathway component EscT [Burkholderia dolosa AUO158] Length = 198 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 150 VKSYGTIPIGQ-ELNFGNIFSSF-VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 +SY PIG +F ++ +F V T F M++L++P + ++ + IGL+ + V Sbjct: 83 AQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVKLAAPVIIVLVLVELGIGLVGRAV 142 Query: 208 PQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PQ+ I+ S P L L + L + +VY HS L Sbjct: 143 PQLNIFVFSQPVKSALAVLMMVLFLP-VVYASLHSLL 178 >gi|52080240|ref|YP_079031.1| flagellar biosynthesis protein FliR [Bacillus licheniformis ATCC 14580] gi|52785617|ref|YP_091446.1| flagellar biosynthesis protein FliR [Bacillus licheniformis ATCC 14580] gi|52003451|gb|AAU23393.1| flagellar protein [Bacillus licheniformis ATCC 14580] gi|52348119|gb|AAU40753.1| FliR [Bacillus licheniformis ATCC 14580] Length = 258 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 78/158 (49%), Gaps = 5/158 (3%) Query: 93 GLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLLALWVIDFHHQVFYALVK 151 +Q GS I +G + + + A++PL + + LL + ++ HH + + Sbjct: 88 AVQIAGSFIDFQMGFAVANVID-PQTGAQSPLVGQFLYTMALLLMLSLNAHHLLLDGIYY 146 Query: 152 SYGTIPIGQ-ELNFGNI-FSSFV-NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVP 208 SY IP+ + L+FG+ F+ F+ T F+ +LS+P + + ++++G++ + VP Sbjct: 147 SYQYIPVDKMALSFGSEEFAEFIAKSFNTMFITAFQLSAPVVACLFLVDLALGIVARTVP 206 Query: 209 QIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 Q+ ++ + P I + + L + + ++ H F + Sbjct: 207 QLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHVFEFA 244 >gi|319645981|ref|ZP_08000211.1| flagellar biosynthetic protein fliR [Bacillus sp. BT1B_CT2] gi|317391731|gb|EFV72528.1| flagellar biosynthetic protein fliR [Bacillus sp. BT1B_CT2] Length = 258 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 78/158 (49%), Gaps = 5/158 (3%) Query: 93 GLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLLALWVIDFHHQVFYALVK 151 +Q GS I +G + + + A++PL + + LL + ++ HH + + Sbjct: 88 AVQIAGSFIDFQMGFAVANVID-PQTGAQSPLVGQFLYTMALLLMLSLNAHHLLLDGIYY 146 Query: 152 SYGTIPIGQ-ELNFGNI-FSSFV-NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVP 208 SY IP+ + L+FG+ F+ F+ T F+ +LS+P + + ++++G++ + VP Sbjct: 147 SYQYIPVDKMALSFGSEEFAEFIAKSFNTMFITAFQLSTPVVACLFLVDLALGIVARTVP 206 Query: 209 QIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 Q+ ++ + P I + + L + + ++ H F + Sbjct: 207 QLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHVFEFA 244 >gi|148553142|ref|YP_001260724.1| flagellar biosynthetic protein FliR [Sphingomonas wittichii RW1] gi|148498332|gb|ABQ66586.1| flagellar biosynthetic protein FliR [Sphingomonas wittichii RW1] Length = 260 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 19/239 (7%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLL---PFLWDT---IDLQNFVNRAYYSK 71 R G+ + P +PMQ+R A+A I L PF+ + ++ F+ Sbjct: 22 RPGAAFIAAPVFGAPQVPMQLRAVVALAIGIPALANTPFVMPVGGIVTIEGFL------- 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV E+ G G +++ G VI A+GL G+ D +P ++ + Sbjct: 75 LVAGEILAGLALGFAVQIGFSAALVAGEVIGNAMGLGFA---GMMDPATGSPSPAVSQYL 131 Query: 132 GLLALW---VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 LLA + H Q+ +V+SY +P G+ F L ++ P Sbjct: 132 SLLATFLFLATGGHLQLAAIIVESYRALPPGEAWLGARSIQGLALFGGDLFAAGLAIALP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 F I+ + + +L + PQ+ I+ + P + G + L ++ ++ + + G Sbjct: 192 VGFALILVQLVMAMLARSAPQMNIFSVGLPATLMAGLVLLAIAAPVMADGITAAIQRGL 250 >gi|57168057|ref|ZP_00367196.1| flagellar biosynthetic protein FliR [Campylobacter coli RM2228] gi|57020431|gb|EAL57100.1| flagellar biosynthetic protein FliR [Campylobacter coli RM2228] Length = 234 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 8/206 (3%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFVNRAYYSKLVMVELFL 79 I+ P S + IPM ++ FA+ ++ L P + + L +F S++V Sbjct: 3 GLIVFFPFFSHNSIPMIIKTTFALFLTMYLFPLAKLEILHLDSFFIIQLLSEIV-----F 57 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + GL++++ + G I+ +G + + + S + ++ +I LL Sbjct: 58 GMIAGLMLQIVFAIVMMAGEQIAFTMGFTMASVLDPSSGTNMPITSQILHLIALLFFLAF 117 Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNI 198 D HH + L S G I +G N+ ++NM + F+I +S P L ++ + Sbjct: 118 DGHHLMLLFLSHSLGYINLGGFYPHENLMH-YLNMGMLNIFIIGFTMSFPILGISLLADT 176 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLG 224 GLL K +PQ + I P I LG Sbjct: 177 IFGLLMKTMPQFNLLVIGYPIKIALG 202 >gi|146294568|ref|YP_001184992.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32] gi|145566258|gb|ABP77193.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32] Length = 259 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 105/227 (46%), Gaps = 7/227 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAYYSKLVM 74 CR+ M++P L +Y+P+ VR+ A++ + +L P L +D + + + ++ Sbjct: 21 CRIMGAFMIMPLLGNAYVPVMVRIFLALSIAALLAPMLPPVPPVDAISLASLFLAIEQLL 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 + L LLI V T+ G+++S +GL + ++ + ++ I G L Sbjct: 81 IGFMLALFLTLLIHVMTM----LGNIMSMQMGLAMAVMNDPANGDSSPIISEWFQIFGTL 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 ++ H +V S+ PIG + F V+ L F L L+ P + + Sbjct: 137 IFLALNGHLVAINIIVDSFRLWPIGHGI-FELPLMGLVSRLAWLFAASLMLAIPAVLAML 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + NI+ G+L++ P + I+ + P + +G L + LS+ I ++S Sbjct: 196 MVNITFGVLSRSAPSLNIFSLGFPMTMLMGLLCVFLSLSGIPSRYSD 242 >gi|226944500|ref|YP_002799573.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] gi|226719427|gb|ACO78598.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] Length = 264 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 4/211 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ F CR+ + ++ P S +P +V++ A+ S++L P L ++ F ++ Sbjct: 13 LLAFFWPFCRITAFLLATPLFGHSGVPARVKIALAVLLSVLLGPNLPPLPEVALF---SW 69 Query: 69 YSKLVMVE-LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + VE + +G G+++RV Q G +I +GL T L+ L Sbjct: 70 PGLGITVEQMLIGLAIGMVMRVTFAAAQTAGDIIGLQMGLGFATFFSPDTGTNSMVLSRL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I LL D H L ++ ++PIG + + T F+ L L+ Sbjct: 130 LYTIALLLFLAFDGHLLELELLAGTFASLPIGLPRLDPSAWEMLARYGGTLFVSGLLLAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + ++ N+++G+LN+ PQ+ ++ + P Sbjct: 190 PLVASLLIVNLAMGILNRSAPQLTVFSVGFP 220 >gi|296124297|ref|YP_003632075.1| type III secretion system inner membrane R protein [Planctomyces limnophilus DSM 3776] gi|296016637|gb|ADG69876.1| type III secretion system inner membrane R protein [Planctomyces limnophilus DSM 3776] Length = 334 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 9/173 (5%) Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI---GIIGLLA 135 +G GL +++ GLQ G +I G L + + L+ G + L Sbjct: 144 IGLFLGLGVQMVLAGLQMAGQIIDQQGGFGLGEVFNPDLQMNASQSGQLLFWLGTVIFLV 203 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 L + H + ++V+S+ +IP+G+ N++Q +F + +R ++P + + Sbjct: 204 LEPLGGHLVMLKSMVESFQSIPVGRAFWEPGTVELLNNLMQASFSLAIRFAAPIMLVMCL 263 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI-----EIIVYQFSHSF 243 + +IG L+ VPQI I + L + SL L +++ +IV F +F Sbjct: 264 VDAAIGFLSHTVPQINIQAVGF-SLKAMVSLLLLITLFSTSPAVIVNAFQETF 315 >gi|153951433|ref|YP_001397725.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. doylei 269.97] gi|152938879|gb|ABS43620.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. doylei 269.97] Length = 255 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 4/211 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+ I+ P S + IPM ++ + ++ L P L++ +++ + Sbjct: 17 LLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPL----ARLESLHLDSFFVLQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + GL++++ + G I+ +G + + + S + ++ ++ L Sbjct: 73 ISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQILNLLAL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + D HH + L S G I +G N+ + F+I +S P L Sbjct: 133 MFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNIGMFNIFIIGFTMSFPILGIS 192 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ GLL K +PQ + I P I LG Sbjct: 193 LLADVIFGLLMKTMPQFNLLVIGYPIKIALG 223 >gi|154249643|ref|YP_001410468.1| type III secretion system inner membrane R protein [Fervidobacterium nodosum Rt17-B1] gi|154153579|gb|ABS60811.1| type III secretion system inner membrane R protein [Fervidobacterium nodosum Rt17-B1] Length = 255 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 95/189 (50%), Gaps = 10/189 (5%) Query: 34 IPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTL- 92 +P+++ + +A S V LP + + + ++ S ++ F+G V GL+ YT+ Sbjct: 36 LPLEIMVVLLLALSYVTLPMVNIMVPITLPISTLVIS--LLFNFFIGFVIGLM--AYTIV 91 Query: 93 GLQFTGSVI-STAIGLNLQTSMGISDSLAETPLNS-LIGIIGLLALWVIDFHHQVFYALV 150 G + GS I G N+ S+ ++ E+P+ S + +I + + H ++ ++V Sbjct: 92 GAVYIGSEIFGIQSGFNVSGSL--DPTMEESPITSEFVYLISVYVFVSLKGHLIIYSSVV 149 Query: 151 KSYGTIP-IGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQ 209 KS P + ++ F I S + + F+ L+++ P + + N+ G+L++LVPQ Sbjct: 150 KSIEKFPLVITDIPFKEINSQYFELFMDAFIFSLQIALPLIGLMFLINVLFGILSRLVPQ 209 Query: 210 IPIYFISTP 218 + ++ ++ P Sbjct: 210 MNVFMVAMP 218 >gi|262276383|ref|ZP_06054192.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886] gi|262220191|gb|EEY71507.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886] Length = 237 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 22/192 (11%) Query: 32 SYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIR 88 ++P++VRL ++A + ++P L +T++L +F ++ +++ + +G V +I+ Sbjct: 7 RFVPVRVRLYLSLAITFAVMPALPRVPETVELVSFGGFVILAQQILIGIAMGTVTQFVIQ 66 Query: 89 VYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV-------IDF 141 + L Q G +Q+S+G + S+ + ++G L+V D Sbjct: 67 TFVLLGQIIG----------MQSSLGFA-SMVDPANGQNTPLLGQFYLFVATMIFLSTDG 115 Query: 142 HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201 H Q+ +V S+ T+P+G L + + + + F + L ++ + + N+S G Sbjct: 116 HLQMLNLVVMSFKTLPVGDMLGAAD-YRAMASWFGIMFSVALGMALAGIIALLTVNLSFG 174 Query: 202 LLNKLVPQIPIY 213 ++ + PQ+ I+ Sbjct: 175 VMTRAAPQLNIF 186 >gi|187733359|ref|YP_001879729.1| flagellar biosynthesis protein FliR [Shigella boydii CDC 3083-94] gi|187430351|gb|ACD09625.1| flagellar biosynthetic protein FliR [Shigella boydii CDC 3083-94] Length = 261 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + V+ P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLPLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|296534147|ref|ZP_06896643.1| flagellar biosynthetic protein FliR [Roseomonas cervicalis ATCC 49957] gi|296265523|gb|EFH11652.1| flagellar biosynthetic protein FliR [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 1/201 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+C M+LPGL +P+ VRL A+A +LLP L + + + A +L+ +E+ Sbjct: 23 RMGACGMVLPGLGEQEVPVTVRLALALAVVALLLPVLGPQLPPEP-QDMAGLVRLIALEV 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G L R+ +Q G I IGL+ S + T L G+ + L Sbjct: 82 AIGFWIGWLARLMVYAVQVAGQAIGLMIGLSSVLSQDPTMGEGSTALGRFFGLAAVSLLL 141 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + AL +SY +P+G L G + +F + LRL++P + ++ Sbjct: 142 ASGLYALPLRALAESYALLPVGAPLPAGPAAEAVAQASAASFALALRLAAPLILLTLLLQ 201 Query: 198 ISIGLLNKLVPQIPIYFISTP 218 + GLL ++ PQ +Y ++ P Sbjct: 202 MGSGLLARIAPQAQVYILALP 222 >gi|254785482|ref|YP_003072911.1| flagellar biosynthetic protein FliR [Teredinibacter turnerae T7901] gi|237685643|gb|ACR12907.1| flagellar biosynthetic protein FliR [Teredinibacter turnerae T7901] Length = 257 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 105/239 (43%), Gaps = 10/239 (4%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL R+G +++P + +VRL A +++++P L + +A + Sbjct: 16 FLPFVRIGVMFLVMPVFGSRIVSPRVRLVLAFLITVLVVPLLPALPSVPPLSWQALF--F 73 Query: 73 VMVELFLGCVHGLLIRV----YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 V E+ LG G +V + LG QF ++ +GL + ++ + T L+ Sbjct: 74 VAQEVVLGAAVGFTFQVVFQMFVLGGQF----MAMKMGLGFASMNDPTNGVQTTVLSQFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L ++ H + +V S+ T+ G+ + + F V + F L ++ P Sbjct: 130 LMLVTLMFVAVEGHLVLISLIVDSFHTLQPGRFVFASSNFYEIVKLGSWMFAAALLMALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + NI+ G++++ PQ+ I+ + P+ + G L + L + F + YGF Sbjct: 190 VITSLLFVNIAFGIMSRAAPQLNIFAVGFPFTLMCGLLLIWLGLTHFSEIFETAITYGF 248 >gi|300693347|ref|YP_003749320.1| flir: flagellar biosynthesis inner membrane protein. flir/mope/spar family [Ralstonia solanacearum PSI07] gi|299075384|emb|CBJ34679.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Ralstonia solanacearum PSI07] Length = 262 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/190 (19%), Positives = 84/190 (44%), Gaps = 6/190 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV + I + P + + IP +++ F + ++ L P L + V+ Y L ++ Sbjct: 22 RVLAFIAVAPPFANTEIPSSIKVAFGVVLTVALAPML----PVPPGVSVGSYEGLWITLL 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G G+ +++ + G ++S IGL T + + + L I + + A Sbjct: 78 QVAIGMALGVCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSMLLGRFISLTAITA 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +AL S+ +P+ G + + F + +R++ P + +V Sbjct: 138 FIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGTAVFALAVRIALPIIAIMMV 197 Query: 196 FNISIGLLNK 205 N++ +L++ Sbjct: 198 VNLAFAVLSR 207 >gi|127512309|ref|YP_001093506.1| flagellar biosynthesis protein FliR [Shewanella loihica PV-4] gi|126637604|gb|ABO23247.1| flagellar biosynthetic protein FliR [Shewanella loihica PV-4] Length = 265 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 110/235 (46%), Gaps = 24/235 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV S +M++ + P +VRL ++A + + P L +++ F A + + +++ Sbjct: 21 RVSSMLMVMAVFGANTTPTRVRLLLSVAITFAIAPMLPVNTEVELFSLGAVFVTVQQILI 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V L+++ + L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVTLLIMQTFVL----TGQII------GMQTSLGFASMVDPGSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT---TFMIMLRLS 186 ++ + +D H + LV S+ TIP+ + G +S+ + + F L +S Sbjct: 131 LLTTMIFLAVDGHLVMIRMLVASFDTIPVSMQ---GISIASYRRLAEWGAYMFGAALTMS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F Sbjct: 188 ISAIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLIILWLTLTPIMAHFDE 242 >gi|90411035|ref|ZP_01219049.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] gi|90328248|gb|EAS44559.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] Length = 260 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 51/243 (20%), Positives = 106/243 (43%), Gaps = 25/243 (10%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRL------CFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 R+ S +M + ++ ++RL FA+ S+ +P + + LQ F+ A Sbjct: 20 TRISSMMMTMTFFGARFVSPRIRLYLGLTVTFAVMPSLPAVPANIELLSLQGFLITAQ-- 77 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETP-L 124 ++ +G GL+ + T G + L +Q+S+G + + TP L Sbjct: 78 -----QIVIGVSIGLVTQFVTQTFVLVGQI------LGMQSSLGFASMVDPANGQNTPVL 126 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 L + ++ D H ++ +V S+ T+PIGQE+ + + F L Sbjct: 127 GQLYLFLAIMLFLATDGHLEMLNVIVLSFKTLPIGQEMFRPDDYYQLAGWFGHMFKGALN 186 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + + N+S G++ + PQ+ I+ + + + LG L + ++ Q+ H++ Sbjct: 187 MALAGVIALLTVNLSFGVMTRAAPQLNIFALGFSFALLLGLLISWYLVMGMLPQYQHAWD 246 Query: 245 YGF 247 +GF Sbjct: 247 FGF 249 >gi|120554899|ref|YP_959250.1| flagellar biosynthesis protein FliR [Marinobacter aquaeolei VT8] gi|120324748|gb|ABM19063.1| flagellar biosynthetic protein FliR [Marinobacter aquaeolei VT8] Length = 261 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 43/203 (21%), Positives = 94/203 (46%), Gaps = 6/203 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 R+ S +M++P +P +VRL A+ +I++ P + ++ A L +++ Sbjct: 24 RLASFLMVIPIFGTQLVPARVRLGLALLMTILIAPMIPPVPQVEALSADAVVITLQQILI 83 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 + LG L +++ + G +I+ +GL + + ++ + L + I L Sbjct: 84 GIGLGFALTALWQLFVI----AGQMIAMQMGLGFASMVDPANGVNVPVLAQIYTITITLL 139 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 V++ H F ++S+ T+PIG E + + + + F + L+ P + ++ Sbjct: 140 FLVMNGHLVAFEVFIESFYTLPIGLEGLGQDGVWALAHRISWMFASAMLLALPAVTAVLI 199 Query: 196 FNISIGLLNKLVPQIPIYFISTP 218 NIS G++ + PQ+ I+ + P Sbjct: 200 VNISFGVMTRAAPQMNIFALGFP 222 >gi|149189858|ref|ZP_01868138.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1] gi|148836344|gb|EDL53301.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1] Length = 258 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 102/218 (46%), Gaps = 9/218 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+G+ + +P + IP+ VR A++ ++ P + +DL + + + M Sbjct: 21 RIGAAFLAMPFFGDALIPVWVRALLALSIVVITAPLMPAMPAVDLLSMTSLFLAFEQAMW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 LF G + L ++T+ G ++S +GL + + L+ L + ++ L Sbjct: 81 GLFFGLILHLFFTIFTM----LGQIVSLQMGLGMAIMNDPVNGLSVAILGRIFLLLCTLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H V LV+S+ P+G + ++ + V++ F L L+ P + ++ Sbjct: 137 FLALEGHLLVIDILVQSFVVWPVGSGITIASL-DNIVSLFGWMFASALALALPAIVSMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 NIS G++N+ P + +Y + P L+GL S+ L +S Sbjct: 196 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSILLTVS 233 >gi|157376186|ref|YP_001474786.1| flagellar biosynthesis protein FliR [Shewanella sediminis HAW-EB3] gi|157318560|gb|ABV37658.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3] Length = 265 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 107/232 (46%), Gaps = 18/232 (7%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 RV S +M++ + P++VRL +MA + + P L +++ F + + ++ +++ Sbjct: 21 RVSSMLMVMAVFGANTTPVRVRLLLSMAITFAIAPVLPPVENIELFALSSVFVTAQQILI 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V L+++ + L TG +I +QTS+G + S +TP + + Sbjct: 81 GVAMGFVTLLVMQTFVL----TGQII------GMQTSLGFASMVDPSSGQQTPVIGNFFL 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ + +D H + LV S+ TIPI + + F L +S Sbjct: 131 LLTTMIFLSVDGHLVLIRMLVVSFETIPISDQGLSITSYKLLAEWGAYMFGAALTMSITA 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F Sbjct: 191 IVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLIILWLTLTPIMEHFGE 242 >gi|167841179|ref|ZP_02467863.1| type III secretion system EscT protein [Burkholderia thailandensis MSMB43] Length = 261 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 40 LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGS 99 L A++ ++ L LW +D + A Y L EL +G V G V L G Sbjct: 44 LVLAISLPVLALHDLWPAVD--GARSWAAYLWLACGELSIGLVIGFCAAVPFWALDMAGF 101 Query: 100 VISTAIGLNLQTSMGISDSLAETPL----NSLIGII--GLLALWVIDFH--HQVFYALVK 151 +I T G ++ + + PL +S++GI+ + +L + F H + AL Sbjct: 102 LIDTMRGASMASVL--------NPLLGQQSSMMGIVFSQVFSLLFMMFGGFHALLEALYA 153 Query: 152 SYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQI 210 SY T+P G F F+ Q + + LR + P + ++ ++++GL+N+ Q+ Sbjct: 154 SYLTLPPGAAFRFRPAALDFLGQQWQLMYTLCLRFAMPAIVAILLVDMALGLVNRSAQQL 213 Query: 211 PIYFISTP 218 ++F++ P Sbjct: 214 NVFFVAMP 221 >gi|238920323|ref|YP_002933838.1| flagellar biosynthesis protein FliR [Edwardsiella ictaluri 93-146] gi|238869892|gb|ACR69603.1| flagellar biosynthetic protein FliR, putative [Edwardsiella ictaluri 93-146] Length = 261 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 3/215 (1%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P L IP +VR+ A + +L P L T D+ + A + L + ++ +GC GL Sbjct: 31 PMLGEKVIPRKVRIALAALTAFLLAPQLPPT-DITLASDGALW--LAIQQILIGCAIGLT 87 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 +++ ++ G VI +GL+ T S L L+ ++ LL + H Sbjct: 88 MQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLARLLNLLALLLFLCANGHLWTI 147 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKL 206 L S+ T+P+ GN F + + F+ + L+ P + + NI++GLLN++ Sbjct: 148 SLLADSFHTLPLSTHPLNGNGFLALAQSGKLIFLSGMMLALPLITLLLTLNIALGLLNRM 207 Query: 207 VPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 PQ+ I+ I P + +G + L + + ++ H Sbjct: 208 TPQLSIFVIGFPLTLTIGMMTLSMLMPMLAPFVDH 242 >gi|167770200|ref|ZP_02442253.1| hypothetical protein ANACOL_01543 [Anaerotruncus colihominis DSM 17241] gi|167667522|gb|EDS11652.1| hypothetical protein ANACOL_01543 [Anaerotruncus colihominis DSM 17241] Length = 254 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 9/205 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW-DTIDLQNFVNRAYYSKL 72 L+ R+ + I P LS +P VR + ++ P L +D V L Sbjct: 14 LVFVRMAAMIGTNPLLSRRNVPAAVRAGLTALLTFLIAPGLTVAPMDQMTLV-------L 66 Query: 73 VMVELFL-GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 M++ FL G G + +++ L F G V+ GL++ ++ + + + I+ Sbjct: 67 AMLKEFLVGFACGYVFQIFYYMLFFAGDVMDMQFGLSMAKVFDPGTNMQVSVSGNFLNIL 126 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L ++ + H + S+ +P G ++ ++ F + LRL+ PF+ Sbjct: 127 FSLFIFATNSHLLLVRIFATSFQIVPAGFTPFSPHVSGYIADLFIEAFSLALRLALPFIA 186 Query: 192 FYIVFNISIGLLNKLVPQIPIYFIS 216 V +S+G+L KL+PQI ++ I+ Sbjct: 187 VEFVLEVSLGILMKLIPQIHVFVIN 211 >gi|299068760|emb|CBJ40000.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Ralstonia solanacearum CMR15] Length = 262 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 38/210 (18%), Positives = 91/210 (43%), Gaps = 12/210 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV + I + P + + IP +++ F + ++ L P L + + + Y L ++ Sbjct: 22 RVLAFIAVAPPFANTEIPTSIKVAFGVVLTVALAPML----PVPSGIAVGSYEGLWITLL 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G G+ +++ + G ++S IGL T + + + L I + + A Sbjct: 78 QVAIGMALGVCVQMVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGRFISLTAITA 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +AL S+ +P+ G + + F + +R++ P + +V Sbjct: 138 FIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGAAVFALAVRIALPIIAIMMV 197 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGS 225 N++ +L++ + P+ +G+ + Sbjct: 198 VNLAFAVLSRTAQAL------NPFAVGIAA 221 >gi|54308127|ref|YP_129147.1| flagellar biosynthesis protein FliR [Photobacterium profundum SS9] gi|46912553|emb|CAG19345.1| putative polar flagellar assembly protein FliR [Photobacterium profundum SS9] Length = 260 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 49/243 (20%), Positives = 105/243 (43%), Gaps = 25/243 (10%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL------WDTIDLQNFVNRAYYS 70 R+ S +M + ++ ++RL + + ++P L + + LQ F+ A Sbjct: 20 TRISSMMMTMTFFGARFVSPKIRLYLGLTVTFAVMPALPAVPANIELLSLQGFLITAQ-- 77 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETP-L 124 ++ +G GL+ + T G + L +Q+S+G + + TP L Sbjct: 78 -----QIVIGVSIGLVTQFVTQTFVLVGQI------LGMQSSLGFASMVDPANGQNTPVL 126 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 L + ++ D H ++ +V S+ T+PIGQE+ + + F L Sbjct: 127 GQLYLFLAIMLFLATDGHLEMLNIIVLSFKTLPIGQEMFRPDDYYQLAGWFGHMFKGALN 186 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + + N+S G++ + PQ+ I+ + + + LG L + ++ Q+ H++ Sbjct: 187 MALAGVIALLTVNLSFGVMTRAAPQLNIFALGFSFALLLGLLISWYLVMGMLPQYQHAWD 246 Query: 245 YGF 247 +GF Sbjct: 247 FGF 249 >gi|297538206|ref|YP_003673975.1| flagellar biosynthetic protein FliR [Methylotenera sp. 301] gi|297257553|gb|ADI29398.1| flagellar biosynthetic protein FliR [Methylotenera sp. 301] Length = 270 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 109/231 (47%), Gaps = 17/231 (7%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++SL + R+ I P + + IP QV+L + ++++ P L + F ++ Sbjct: 13 IVSLLWPLTRILGVIAAAPIFNHTAIPNQVKLGLGIMLTLIIAPTLPAMPHFEIF---SF 69 Query: 69 YSKLVMVE-LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++V+ L +G G +R+ ++ G +I ++GL T +N Sbjct: 70 QGLLILVQQLVIGLAIGFSMRLVFSAVELAGQLIGMSMGLGFAGFYDPQSQGQSTAVNQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNML------QTTFMI 181 + ++ +L +D H + A+ S+ T+PI + SS ++ L +T F + Sbjct: 130 LVLLAMLIFLSLDGHLLIITAVANSFLTMPI-------TVGSSGIDPLKIAMWGETIFSV 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 L L+ P + ++ N+++G+L K PQ+ ++ I P + +G + + LS+ Sbjct: 183 GLILALPAVAALLITNMALGILTKTAPQLNLFGIGFPVTLSIGLVVIALSL 233 >gi|283784008|ref|YP_003363873.1| flagellar biosynthetic protein [Citrobacter rodentium ICC168] gi|282947462|emb|CBG87009.1| flagellar biosynthetic protein [Citrobacter rodentium ICC168] Length = 260 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 44/214 (20%), Positives = 98/214 (45%), Gaps = 9/214 (4%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ L+ R+ + I +P + + ++VR+ ++A +IV+ P + + + Sbjct: 12 LVLGLWFPFVRIMAFIRYVPVFDNAALTIRVRIILSLALAIVITPMIPHPVPDSLLSMNS 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ G + GL+ + L LQ G ++S +G+++ + T L L Sbjct: 72 LI--LTAEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPGSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS---SFVNMLQTTFMIMLR 184 I + ++ + +D H + L K + PIG L+ ++ + +F +L + ++ L Sbjct: 130 INVYAVILFFAMDGHLLLVSVLYKGFTYWPIGNALHPQSLRTLALAFSWVLGSAMLLAL- 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P F ++ GLLN++ P + +Y + P Sbjct: 189 ---PTTFIMLIVQGCFGLLNRVAPPLNLYSLGFP 219 >gi|134294010|ref|YP_001117746.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia vietnamiensis G4] gi|134137167|gb|ABO58281.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia vietnamiensis G4] Length = 269 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 10/117 (8%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQELNFGNIFSSF-----VNMLQTTFMIMLRLSS 187 LAL+V QV L +SY PIG +FG SS V T F M++L++ Sbjct: 137 LALFVTAGGLQVLVQLFAQSYAWWPIG---SFGPDLSSMLQTFVVRQTDTIFEWMVKLAA 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 P + ++ + IGL+ + VPQ+ ++ S P L L + L + +VY H+ L Sbjct: 194 PVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLP-VVYASLHALL 249 >gi|16765319|ref|NP_460934.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413106|ref|YP_150181.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180556|ref|YP_216973.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613450|ref|YP_001587415.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167993556|ref|ZP_02574650.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234154|ref|ZP_02659212.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239221|ref|ZP_02664279.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244832|ref|ZP_02669764.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259732|ref|ZP_02681705.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462477|ref|ZP_02696408.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823024|ref|ZP_02835024.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444159|ref|YP_002041246.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449212|ref|YP_002046032.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472341|ref|ZP_03078325.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736717|ref|YP_002115015.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197265429|ref|ZP_03165503.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362032|ref|YP_002141669.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207856506|ref|YP_002243157.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583520|ref|YP_002637318.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912446|ref|ZP_04656283.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141401|sp|P54702|FLIR_SALTY RecName: Full=Flagellar biosynthetic protein fliR gi|16420516|gb|AAL20893.1| putative flagellar biosynthetic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127363|gb|AAV76869.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128189|gb|AAX65892.1| putative flagellar biosynthetic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362814|gb|ABX66582.1| hypothetical protein SPAB_01167 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402822|gb|ACF63044.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407516|gb|ACF67735.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458705|gb|EDX47544.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712219|gb|ACF91440.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634515|gb|EDX52867.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093509|emb|CAR58970.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197243684|gb|EDY26304.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288058|gb|EDY27445.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205328394|gb|EDZ15158.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331896|gb|EDZ18660.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336365|gb|EDZ23129.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340657|gb|EDZ27421.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350805|gb|EDZ37436.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708309|emb|CAR32612.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468047|gb|ACN45877.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247147|emb|CBG24970.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993970|gb|ACY88855.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158495|emb|CBW18005.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912971|dbj|BAJ36945.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224626|gb|EFX49689.1| Flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616974|gb|EFY13882.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618213|gb|EFY15105.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625884|gb|EFY22703.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626336|gb|EFY23146.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632751|gb|EFY29496.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639093|gb|EFY35786.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640409|gb|EFY37065.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647230|gb|EFY43729.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649885|gb|EFY46307.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655530|gb|EFY51838.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660308|gb|EFY56546.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662989|gb|EFY59196.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668174|gb|EFY64333.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674067|gb|EFY70161.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675581|gb|EFY71655.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683008|gb|EFY79024.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686702|gb|EFY82680.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715032|gb|EFZ06603.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130260|gb|ADX17690.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195410|gb|EFZ80590.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198062|gb|EFZ83179.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204466|gb|EFZ89472.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207556|gb|EFZ92504.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211005|gb|EFZ95865.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217541|gb|EGA02260.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220726|gb|EGA05170.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226687|gb|EGA10884.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231563|gb|EGA15676.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236006|gb|EGA20085.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240576|gb|EGA24619.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245468|gb|EGA29468.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247586|gb|EGA31537.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253951|gb|EGA37775.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255521|gb|EGA39282.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262119|gb|EGA45682.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266242|gb|EGA49732.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270649|gb|EGA54090.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332988870|gb|AEF07853.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 264 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 17 FWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 AMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|157147127|ref|YP_001454446.1| hypothetical protein CKO_02904 [Citrobacter koseri ATCC BAA-895] gi|157084332|gb|ABV14010.1| hypothetical protein CKO_02904 [Citrobacter koseri ATCC BAA-895] Length = 257 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 49/226 (21%), Positives = 105/226 (46%), Gaps = 4/226 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +M+L L R+ + + P L ++++ A+A SI++ P L + + L ++ Sbjct: 12 LMALVLPFFRILAFLQFAPVLDNRAFSRRIKIAAALALSIIITPMLPNNVVLSELLSMRT 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ +L G + G+ +++ + LQ G ++S +GL + + + T ++ +I Sbjct: 72 V-LLIGEQLLWGFLFGMALQLVFVTLQTAGHILSMNMGLGMAMMNDPVNGSSTTVISQII 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L +++D H + L K + PIGQ +N + + V L ++ P Sbjct: 131 YVFCALLFFIMDGHLLLVTILFKGFSYWPIGQAINQPTL-TLIVQGLGWIMASATLIALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 F ++ GLLN++ P + ++ + P + G LC+S+ + Sbjct: 190 TTFVMLIVQGGFGLLNRVSPTLNLFSLGFPISMLFG--LLCISMMV 233 >gi|254462422|ref|ZP_05075838.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium HTCC2083] gi|206679011|gb|EDZ43498.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium HTCC2083] Length = 273 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 105/213 (49%), Gaps = 10/213 (4%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--S 70 FL R+ + + P + IP+QVR+ ++ S+ + +++ + + Sbjct: 30 FLHTIRLSAFFLSAPFFGAASIPVQVRVMVSILISVSF----FGKVEVPDPQTLPFLLLV 85 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIG 129 +++MVE+ +G + GL++ V + G ++++ GL + + +TP ++ L+ Sbjct: 86 EVIMVEIAMGLLLGLILTVLFSSVALAGEKVASSAGLGFAAQVD-PNLGGQTPVISQLLN 144 Query: 130 IIGLLALWVIDFHHQVFYALVK-SYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + G++ +D H V AL+K SY +P+G+ NF + +S + F + LS P Sbjct: 145 LFGIVLFLAMD-GHLVCIALIKGSYDLMPLGRPFNFQALIASGLTSGGHMFSMASLLSFP 203 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 + ++ NI++G++ + PQ+ ++ P I Sbjct: 204 IVAILLLANITVGVITRSAPQLNLFSFGFPLTI 236 >gi|16760925|ref|NP_456542.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141383|ref|NP_804725.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213025463|ref|ZP_03339910.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163374|ref|ZP_03349084.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417180|ref|ZP_03350324.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424993|ref|ZP_03357743.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612733|ref|ZP_03370559.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650741|ref|ZP_03380794.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855266|ref|ZP_03383506.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25346403|pir||AF0753 flagellar biosynthetic protein FliR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503222|emb|CAD05729.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Typhi] gi|29137010|gb|AAO68574.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 264 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 17 FWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 AMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|213580028|ref|ZP_03361854.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 253 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 6 FWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 62 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 63 AMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 122 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 123 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 182 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 183 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 233 >gi|205352325|ref|YP_002226126.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272106|emb|CAR36959.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627375|gb|EGE33718.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 264 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 17 FWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 AMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 ILLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|170737796|ref|YP_001779056.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia MC0-3] gi|254250202|ref|ZP_04943522.1| Type III secretory pathway, component EscT [Burkholderia cenocepacia PC184] gi|124876703|gb|EAY66693.1| Type III secretory pathway, component EscT [Burkholderia cenocepacia PC184] gi|169819984|gb|ACA94566.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia MC0-3] Length = 269 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSF-VNMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +F V T F M++L++P Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVKLAAPVT 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + IGL+ + VPQ+ I+ S P L L + L + +VY HS L Sbjct: 197 IVLVLVELGIGLVGRAVPQLNIFVFSQPLKSALAVLMMILFLP-VVYASLHSLL 249 >gi|198244152|ref|YP_002215105.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938668|gb|ACH76001.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 264 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 17 FWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 TMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|17548594|ref|NP_521934.1| flagellar biosynthetic fliR transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430842|emb|CAD17524.1| probable flagellar biosynthetic flir transmembrane protein [Ralstonia solanacearum GMI1000] Length = 262 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 38/210 (18%), Positives = 91/210 (43%), Gaps = 12/210 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV + I + P + + IP +++ F + ++ L P L + ++ Y L ++ Sbjct: 22 RVLAFIAVAPPFANTEIPTSIKVAFGVVLTVALAPML----PVPAGISVGSYEGLWITLL 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G G+ +++ + G ++S IGL T + + + L I + + A Sbjct: 78 QVAIGMALGVCVQMVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGRFISLTAITA 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +AL S+ +P+ G + + F + +R++ P + +V Sbjct: 138 FIAGDGHLVLMHALFDSFTVLPVSAAPLAGGGWQTLAGGGAAVFALAVRIALPIIAIMMV 197 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGS 225 N++ +L++ + P+ +G+ + Sbjct: 198 VNLAFAVLSRTAQAL------NPFAVGIAA 221 >gi|311695201|gb|ADP98074.1| flagellar biosynthesis protein FliR [marine bacterium HP15] Length = 261 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 39/201 (19%), Positives = 88/201 (43%), Gaps = 2/201 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ S +M++P +P ++RL A+ +I++ P + ++ A + + ++ Sbjct: 24 RLASFLMVIPIFGTQLVPARIRLGLALLMTILIAPMIPPVPQVEALSADAVV--ITLQQI 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G + G +I+ +GL + + ++ + L+ + I L Sbjct: 82 LIGVGMGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVNVPVLSQIYTITITLLFL 141 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H F ++S+ T+PIG E + + F + L+ P + ++ N Sbjct: 142 AMNGHLVAFEVFIESFRTLPIGMEGLGQTGIWELAHRISWMFASAMLLALPAVTAVLIVN 201 Query: 198 ISIGLLNKLVPQIPIYFISTP 218 IS G++ + PQ+ I+ + P Sbjct: 202 ISFGVMTRAAPQMNIFALGFP 222 >gi|283782109|ref|YP_003372864.1| type III secretion system inner membrane R protein [Pirellula staleyi DSM 6068] gi|283440562|gb|ADB19004.1| type III secretion system inner membrane R protein [Pirellula staleyi DSM 6068] Length = 277 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 9/201 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L++ R+G + +LP S +PMQ R A+A +++L P + N ++ Sbjct: 17 LVLTRIGMLVFILPMFGSSSVPMQARAILAIAIALILTPVYAGALP-SPPENLMMLGLML 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E LG GL + + G+Q GS+IS G+ L + + + L+ ++ L Sbjct: 76 ARESMLGLALGLAVMILLAGMQLAGSIISQMSGMTLADVANPTFDTSVPIFSQLLEMLSL 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT----TFMIMLRLSSPF 189 + + H V AL+ ++ +P GQ V ML T +F I +R ++P Sbjct: 136 AIFFSLGGHRLVMSALLDTFKFMPPGQ----ATFPEEAVEMLATIFTHSFEIGIRAAAPA 191 Query: 190 LFFYIVFNISIGLLNKLVPQI 210 + ++ + + L+++ +PQ+ Sbjct: 192 IISLLLAILVVALISRTLPQL 212 >gi|38639344|gb|AAR25810.1| BcscT [Burkholderia multivorans E243] Length = 269 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +FV T F M++L++P + Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVKLAAPVI 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + IGL+ + VPQ+ ++ S P L L + L + +VY H+ L Sbjct: 197 IVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLP-VVYASLHALL 249 >gi|308048764|ref|YP_003912330.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799] gi|307630954|gb|ADN75256.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799] Length = 261 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 23/232 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 R+ + IM++ + S +P +VRL ++ + + P L ++ + ++ V++ Sbjct: 21 RISAMIMVMVTIGGSSVPARVRLLLSVMITAAVAPILPAPPPVELLSAEGFLISAQQVVI 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS----LIG-- 129 + +G V L++ + L Q G +QTS+G + + P N L+G Sbjct: 81 GIAIGFVSVLVLNTFVLAGQIIG----------MQTSLGFASMV--DPSNGQQVPLVGQF 128 Query: 130 --IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L + +D H + LV S+ T+PIG+ L+ + + V F L LS Sbjct: 129 YLLLSTLLFFGVDGHLLMIRMLVASFETLPIGEGLSPSGL-DAIVKFGGLMFASALTLSL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ N S G++ + PQ+ I+ I P + G L L L++ ++ F Sbjct: 188 SAATALLLINFSFGVMTRAAPQLNIFAIGFPITMLSGLLILWLTLGGVLSHF 239 >gi|283832655|ref|ZP_06352396.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC 29220] gi|291072329|gb|EFE10438.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC 29220] Length = 261 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P LS IP +V+L + +IV+ P + D+ F A + Sbjct: 17 FWPLLRILALISTAPILSERAIPKRVKLGLGVIITIVIAPSI-PPADVPIFSIGALWQA- 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G +I +GL+ T L L LI ++ Sbjct: 75 -MQQILIGIALGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLARLIDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGGNPVNSNAFLALARAGSLIFINGLMLALPVMTL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|149178712|ref|ZP_01857295.1| flagellar biosynthetic protein fliR/B [Planctomyces maris DSM 8797] gi|148842410|gb|EDL56790.1| flagellar biosynthetic protein fliR/B [Planctomyces maris DSM 8797] Length = 329 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 10/171 (5%) Query: 57 TIDLQNFVNRA-----YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNL-- 109 T++ FV R Y+ ++ EL LG GL I + L LQ G +I G+ L Sbjct: 122 TVNDYRFVTRMPNSLLDYAWSILGELTLGFSLGLGIYIILLSLQMAGQMIDQQAGMALGE 181 Query: 110 --QTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167 ++ SL+ L IGI L + ++ H + +L+ ++ P+G+ + N Sbjct: 182 VFNPGFDMNASLSGQYL-YFIGISVFLLMEPVNGHLLMLSSLIDTFQVFPVGEGIVSTNT 240 Query: 168 FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 ++ + ++ +++++P L + +IS+G L VPQI + I P Sbjct: 241 LDLLQTLMHQSLVLSIKVAAPLLAISALISISMGYLGHTVPQINVLVIGFP 291 >gi|157145256|ref|YP_001452575.1| flagellar biosynthesis protein FliR [Citrobacter koseri ATCC BAA-895] gi|157082461|gb|ABV12139.1| hypothetical protein CKO_00993 [Citrobacter koseri ATCC BAA-895] Length = 264 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L ++++ P L ++ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERTVPKRVKLGLGFMITLIIAPSL-PANNVPVFSTEALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 AMQQIMIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSRLNMPVLARILDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG + N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGGDPVNSNAFLALARAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+S+GLLN++ PQ+ ++ I P + +G L + + +I H F Sbjct: 194 LLTLNLSLGLLNRMAPQLSVFVIGFPLTLSVGILLITALMPLIAPFCEHLF 244 >gi|221209599|ref|ZP_03582580.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD1] gi|221170287|gb|EEE02753.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD1] Length = 270 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +FV T F M++L++P + Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVKLAAPVI 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + IGL+ + VPQ+ ++ S P L L + L + +VY H+ L Sbjct: 197 IVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLP-VVYASLHALL 249 >gi|331005444|ref|ZP_08328823.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC1989] gi|330420720|gb|EGG95007.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC1989] Length = 255 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 41/223 (18%), Positives = 99/223 (44%), Gaps = 9/223 (4%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ---NFVNRAYYS 70 L+ R + ++ P S++ +P ++++ + S +L+ +++LQ +N A Sbjct: 15 LVFIRCSALFLMSPLFSIARVPTRIKVFLLIIISAILV----SSLNLQLPDTSINSAQLV 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 EL +G I G ++ +G + + + S + + +L+ + Sbjct: 71 YYAFGELVIGAAMAFGIFAAFASFSLGGRILDFQMGFGVASLIDPSTNAQAPMIGTLLKM 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + ++ +++D HH + + + P G L + +ML ++P + Sbjct: 131 LAVMIFFLVDGHHLLIRGIAYTLAHYPPGTMPKIDIQIIIKQFGLMFVYGVML--AAPVI 188 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 F ++ +IS+G+ + +PQ+ ++ + P IG+G L LS++ Sbjct: 189 FIILLIDISMGIAARTMPQVNMFIVMLPLKIGVGLFVLMLSLQ 231 >gi|221200563|ref|ZP_03573605.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD2M] gi|221209220|ref|ZP_03582211.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD2] gi|221170910|gb|EEE03366.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD2] gi|221179904|gb|EEE12309.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD2M] Length = 270 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +FV T F M++L++P + Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVKLAAPVI 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + IGL+ + VPQ+ ++ S P L L + L + +VY H+ L Sbjct: 197 IVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLP-VVYASLHALL 249 >gi|320085401|emb|CBY95182.1| Flagellar biosynthetic protein fliR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 290 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 43 FWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 99 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 100 AMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 159 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 160 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 219 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 220 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 270 >gi|257457601|ref|ZP_05622768.1| flagellar biosynthetic protein FliR [Treponema vincentii ATCC 35580] gi|257444987|gb|EEV20063.1| flagellar biosynthetic protein FliR [Treponema vincentii ATCC 35580] Length = 266 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 98/212 (46%), Gaps = 14/212 (6%) Query: 7 IIMMSLFLIVC-RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFV 64 ++ LF +VC R+ + I P LS +P ++ A +++P + + +D+Q F Sbjct: 10 LVKAPLFFLVCVRIFAMISTTPLLSTRAVPRIAKISLAGLIGFLVMPVAYGSPLDVQGF- 68 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 Y+ LV+ E LG + G I + G S +G + + D+LA+ Sbjct: 69 -NLDYALLVVGEALLGVLTGFFISIIFASFSTAGQFFSYQMGFGVSE---VYDALAQIE- 123 Query: 125 NSLIG-----IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSF-VNMLQTT 178 N L+G I L+ L + F +++S+ +I L + +SF V L + Sbjct: 124 NPLMGQFLNFIAVLIFLQIKGFQTLFLGGVLRSFQSINCFMFLEKRELVASFLVTNLGSL 183 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQI 210 F+ + ++ P + + ++S+GLL+K PQ+ Sbjct: 184 FLNAMMIAMPVMGTLFLVHVSMGLLSKAAPQM 215 >gi|161520298|ref|YP_001583725.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia multivorans ATCC 17616] gi|189353523|ref|YP_001949150.1| type III secretion protein SctT [Burkholderia multivorans ATCC 17616] gi|160344348|gb|ABX17433.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia multivorans ATCC 17616] gi|189337545|dbj|BAG46614.1| type III secretion protein SctT [Burkholderia multivorans ATCC 17616] Length = 270 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +FV T F M++L++P + Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVKLAAPVI 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + IGL+ + VPQ+ ++ S P L L + L + +VY H+ L Sbjct: 197 IVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLP-VVYASLHALL 249 >gi|107025877|ref|YP_623388.1| Type III secretion protein SpaR/YscT [Burkholderia cenocepacia AU 1054] gi|116692939|ref|YP_838472.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia HI2424] gi|105895251|gb|ABF78415.1| Type III secretion protein SpaR/YscT [Burkholderia cenocepacia AU 1054] gi|116650939|gb|ABK11579.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia HI2424] Length = 269 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSF-VNMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +F V T F M++L++P Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVKLAAPVT 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + +GL+ + VPQ+ I+ S P L L + L + +VY HS L Sbjct: 197 IVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAVLMMILFLP-VVYASLHSLL 249 >gi|197250835|ref|YP_002146042.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200389554|ref|ZP_03216165.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|197214538|gb|ACH51935.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199601999|gb|EDZ00545.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 264 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 17 FWPLLRILALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 AMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|330940693|gb|EGH43705.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. pisi str. 1704B] Length = 143 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V LV+S+ T+P+G L N F N L +RL P + ++ N Sbjct: 25 AMNGHLVVLEILVESFTTMPVGSGLLVNN-FWELANGLGWVLASGMRLVLPAITALLIIN 83 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I+ G++ + PQ+ I+ I P + +G + L +++ I+ Q+ Sbjct: 84 IAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWMTMGDILNQYQ 126 >gi|303247999|ref|ZP_07334265.1| flagellar biosynthetic protein FliR [Desulfovibrio fructosovorans JJ] gi|302490556|gb|EFL50461.1| flagellar biosynthetic protein FliR [Desulfovibrio fructosovorans JJ] Length = 259 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 46/220 (20%), Positives = 103/220 (46%), Gaps = 1/220 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + LLP + +P V+ F + ++ + P L + N S Sbjct: 13 SFVLTLMRISLVVFLLPFFGANLLPNMVKAAFCLMLTLAVFPMLSFPGTMMP-ANVWSLS 71 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +++ E+ +G + +L+ +Q G+++ ++G +L SM +E+ L L+ Sbjct: 72 LMLLGEVVMGLLLNILVLFLFAAVQCAGAIMGFSMGFSLMNSMDPLTGASESGLGHLMSQ 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + ++ H + L +S+ +P G L + + F++ L++++P + Sbjct: 132 VTTMLFLSLNGHLVLLGGLAQSFKLVPPGGLLISPALGEHLIVFSGQMFVMALKIAAPIM 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + ++++ L+ + PQ+ + FI P IG+G LF+ L Sbjct: 192 ASIFLVDLALALVARAAPQMNVLFIGFPLKIGVGFLFMTL 231 >gi|88813213|ref|ZP_01128453.1| Flagellar biosynthesis pathway, component FliR [Nitrococcus mobilis Nb-231] gi|88789535|gb|EAR20662.1| Flagellar biosynthesis pathway, component FliR [Nitrococcus mobilis Nb-231] Length = 258 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 39/201 (19%), Positives = 88/201 (43%), Gaps = 2/201 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + ++ P S IP+++R+ + ++ +LP + + L + ++ Sbjct: 21 RVSAVLLTAPLFSNILIPVRLRVLLGVGLTVAVLPAVGNVPQLDPLSPEGVL--VAGQQV 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G GLL+ + + G +S +GL T + ++ + ++ + I+ +L Sbjct: 79 LIGAAIGLLLAMAFQAVAIAGETLSITMGLGFATMISPQTGVSSSVISQFLLILAMLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + H + L +S+ T+PI G + V F + L+ P + ++ N Sbjct: 139 AVGAHLMLIQLLAESFRTLPIAASGLGGQDVYALVGWAGEMFAGGVLLALPAVAVLLIVN 198 Query: 198 ISIGLLNKLVPQIPIYFISTP 218 + IG++ + PQ+ I+ + P Sbjct: 199 LIIGVMTRTAPQMNIFSVGLP 219 >gi|115358969|ref|YP_776107.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria AMMD] gi|170702399|ref|ZP_02893288.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria IOP40-10] gi|171322218|ref|ZP_02911065.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] gi|172063761|ref|YP_001811412.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MC40-6] gi|115284257|gb|ABI89773.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria AMMD] gi|170132693|gb|EDT01132.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria IOP40-10] gi|171092455|gb|EDT37800.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] gi|171996278|gb|ACB67196.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MC40-6] Length = 269 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +FV T F M++L++P + Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLETFVVRQTDTIFEWMVKLAAPVI 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + IGL+ + VPQ+ I+ + P L L + L + +VY H+ L Sbjct: 197 IVLVLVELGIGLVGRAVPQLNIFVFAQPVKSALAVLMMVLFLP-VVYASLHALL 249 >gi|294636882|ref|ZP_06715212.1| flagellar biosynthetic protein FliR [Edwardsiella tarda ATCC 23685] gi|291089912|gb|EFE22473.1| flagellar biosynthetic protein FliR [Edwardsiella tarda ATCC 23685] Length = 261 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 5/216 (2%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYYSKLVMVELFLGCVHGL 85 P L IP +VR+ A + ++ P L T I L + A + L + ++ +GC GL Sbjct: 31 PLLGEKAIPRKVRIALAALTAFLIAPQLPPTTITLAS--GGALW--LAIQQILIGCAIGL 86 Query: 86 LIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQV 145 +++ ++ G VI +GL+ T S L L+ ++ LL + H + Sbjct: 87 TMQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLARLLNLLMLLLFLCFNGHLWI 146 Query: 146 FYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNK 205 L S+ T+P+ GN F + F+ + L+ P + + N+++GLLN+ Sbjct: 147 ISLLADSFHTLPLSTAPLAGNGFLALAQSGHLIFLNGMMLALPLITLLLTLNMALGLLNR 206 Query: 206 LVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + PQ+ I+ + P + +G L L + I ++ H Sbjct: 207 MTPQLSIFVVGFPLTLTIGMLTLGMLIPMLAPFTEH 242 >gi|220934506|ref|YP_002513405.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. HL-EbGR7] gi|219995816|gb|ACL72418.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. HL-EbGR7] Length = 257 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 109/233 (46%), Gaps = 8/233 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R+ + ++ P + ++VRL A ++V+ P I L V + LV+ Sbjct: 21 RISAMLLAAPLYGAGTVTVRVRLAIAFILALVVAPL----IPLPPAVEPLSLAGLVVSVQ 76 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLL 134 ++ +G G ++++ L G I+ ++GL SM S + P+ +S I+ L Sbjct: 77 QILIGLTIGFVLQMVFAALTQAGEAIALSMGLGF-ASMVDPQSGVQVPVVSSYFVIMSTL 135 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 ++ H + + S+ +P+G E + V+ T F+ L ++ P + + Sbjct: 136 LFLALNGHVALIELTLLSFQALPVGVEGVTREGLWALVSWGSTMFLYALLVALPAVASML 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N+S+G++ + PQ+ I+ + P +I LG + L L+ +++ +F+ GF Sbjct: 196 LVNLSMGVITRAAPQLNIFAVGFPMMIMLGFILLLLTTPVLLPKFTELLASGF 248 >gi|330809226|ref|YP_004353688.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377334|gb|AEA68684.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 247 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 21/232 (9%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ +++ P L S IP+ VRL A+A S VL+ ++ L + + +V Sbjct: 11 LVSVRLIPLVVVSPILFFSRIPLTVRLILALALSGVLV----GSMTLTH--APVFTLPVV 64 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + EL LG + G+ G +I T IGLN + G+ D +++ G++ Sbjct: 65 LGELLLGVLMAFGFHAAHAGVDMAGKLIDTQIGLN---AAGVFDPGT----SNMTGLMAE 117 Query: 134 LALW-------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L +W V++ HH + + +P G S M Q F++ + Sbjct: 118 LLVWSLGALFVVLNLHHDLLRVFAQLLVAVPPGSVSLSTLSVSLATVMTQQ-FLLAFMIV 176 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 P + + +++ L++ +PQ +YF+S P +G+G L++ +IV + Sbjct: 177 VPVILGLWLIDVAFAFLSRSMPQANVYFLSLPLKLGVGMFIFILTLPMIVQR 228 >gi|290475716|ref|YP_003468605.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus bovienii SS-2004] gi|289175038|emb|CBJ81841.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus bovienii SS-2004] Length = 260 Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust. Identities = 44/207 (21%), Positives = 97/207 (46%), Gaps = 9/207 (4%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P S P++VR+ A+A + +L+P + Q V +++ ++ +G GL Sbjct: 31 PIFSEKQTPIKVRMSLALAITFLLVP---NIPSPQIPVFSVAGVWVMIQQVLIGVALGLT 87 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 +++ ++ G ++ +GL+ T + L ++ ++ +L +D H + Sbjct: 88 MQIAFAAIRHAGEILGLQMGLSFATFFDPTGGPNMPILARILNLLMMLMFLALDGHLWLL 147 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR---LSSPFLFFYIVFNISIGLL 203 L ++ +IPI Q + F+ + Q+ +I + L+ P + +V N ++G+L Sbjct: 148 SILAGTFDSIPI-QPMQLNP--KGFLLLAQSAHLIFINGMMLAMPLITLLLVLNFALGML 204 Query: 204 NKLVPQIPIYFISTPYLIGLGSLFLCL 230 N++ PQ+ ++ I P + +G L L Sbjct: 205 NRMTPQLSVFVIGFPLTLTVGIFTLSL 231 >gi|222824090|ref|YP_002575664.1| flagellar biosynthesis protein FliR [Campylobacter lari RM2100] gi|222539312|gb|ACM64413.1| flagellar biosynthesis protein FliR [Campylobacter lari RM2100] Length = 256 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 107/227 (47%), Gaps = 7/227 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ I+ P S + IP+ V+ A+ ++ FL+ L+N +++ + Sbjct: 17 LLFARMSGLIVFFPFFSHNSIPLVVKTTLALFLTM----FLYPLAKLENNTPDSFFILYL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGIIG 132 + E+ G V GL++++ LQ G IS +G ++ + + + A TP ++ ++ ++ Sbjct: 73 LSEVLFGMVAGLILQMIFAILQMAGEQISFTMGFSMASILDPATG-ANTPVISQVLNLLA 131 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL D HH + + S I +G N+ + F++ ++ P L Sbjct: 132 LLVFLAFDGHHLILLFISNSLEYISLGGFYPHENLMLYLNKAMVNIFVLGFSMAFPILAI 191 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ ++ G+L K +PQ + + P I L S + ++I +I+ Q+ Sbjct: 192 SLLSDVIFGMLMKTMPQFNLLVVGYPIKIFL-SFAVLIAILLIMMQY 237 >gi|253681513|ref|ZP_04862310.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum D str. 1873] gi|253561225|gb|EES90677.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum D str. 1873] Length = 610 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 107/229 (46%), Gaps = 7/229 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + +FLI R+ S + ++P P V++ F + S +++P ID N N Sbjct: 8 LGIFLISLRMFSFVEVVPIFFPKGTPNVVKIMFTVILSFMIIP----GIDYSNISNINGN 63 Query: 70 SKLVM---VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +L+M +E+ G G + + +++ G+ + +G + T + + T + Sbjct: 64 LQLIMYCLIEITTGLTFGFITNICFSCIRYAGAFMDLQVGFAMITMFDPNSNSNVTLIER 123 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ L+ ++D + ++S+ I IG+ + N +N+ F + +R++ Sbjct: 124 LLYWFSLIVFIIVDGPRMIIKIFIESFNVIHIGKFILNQNSAMHVINVFVKYFQLGIRIA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + I+ ++++GL+ K VPQ+ I + P I LG + LS+ +I Sbjct: 184 IPIVLIIILTDLTMGLVAKTVPQLNIMILGMPVKIILGLSVIALSLPVI 232 >gi|325527470|gb|EGD04804.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp. TJI49] Length = 269 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSF-VNMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +F V T F M++L++P Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVKLAAPVT 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + IGL+ + VPQ+ I+ + P L L + L + +VY H+ L Sbjct: 197 IVLVLVELGIGLVGRAVPQLNIFVFAQPVKSALAVLMMALFLP-VVYASLHALL 249 >gi|32490797|ref|NP_871051.1| hypothetical protein WGLp048 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166003|dbj|BAC24194.1| fliR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 258 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 11/165 (6%) Query: 93 GLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKS 152 ++F+G +I +GL+ ++ +I +L D H V L S Sbjct: 96 SIKFSGELIGLQMGLSFAVFFDHISGPNSPIISRFFNLILILIFLSFDAHLTVLDILFNS 155 Query: 153 YGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIP 211 + IPIG F + IF S +N F L LS P + + NI G+LN+ PQ Sbjct: 156 FKLIPIGINFKFNDEIFFSIINFSGIIFANGLFLSIPSITMLLSLNILFGILNRFTPQFS 215 Query: 212 IYFI--STPYLIGLGSLFLC------LSIEIIVYQFSHSFLYGFF 248 I+ I S LIGL S+++ LS ++I F + +Y FF Sbjct: 216 IFVIGFSLTLLIGLLSIYIILNNFQKLSTDLIFNTFKY--IYNFF 258 >gi|91223203|ref|ZP_01258469.1| putative flagellar biosynthetic protein FliR [Vibrio alginolyticus 12G01] gi|91192016|gb|EAS78279.1| putative flagellar biosynthetic protein FliR [Vibrio alginolyticus 12G01] Length = 258 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 5/216 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RVG+ + +P + IP+ VR A++ ++ P + ++ F + + L + Sbjct: 21 RVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSMTSLF--LAFEQA 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL++ + G VIS +GL + + L+ L + I L Sbjct: 79 IWGVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILGRIFLIFSTLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V +++S+ P+G + ++ VN+ F L L+ P + ++ N Sbjct: 139 ALEGHLLVIDIVIQSFVVWPVGSGITSLSL-QGVVNIFGWMFASSLALALPAIVSMLLAN 197 Query: 198 ISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 IS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 198 ISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|300722652|ref|YP_003711942.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus nematophila ATCC 19061] gi|297629159|emb|CBJ89755.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus nematophila ATCC 19061] Length = 260 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 110/227 (48%), Gaps = 11/227 (4%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + + P S +P++VR+ A+ + +L+P + + + F + + Sbjct: 17 FWPLVRLLALFSIAPIFSEKQMPIKVRIGLALVITALLVPSI-PSPHIPIFSIAGIW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ ++ +G GL I++ ++ G ++ +GL+ T + L+ ++ ++ Sbjct: 74 LIQQILIGVALGLTIQIAFAVVRHAGEILGLQMGLSFATFFDPTGGPNMPILSRILNMLM 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLR---LSSP 188 +L D H + LV ++ TIPI +LN F+ + Q+ MI + L+ P Sbjct: 134 MLLFLAFDGHLWLLSILVDTFHTIPIQVTQLNP----KGFLLLAQSASMIFVNGMMLAMP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + ++ N ++G+LN++ PQ+ ++ + P + +G L L I ++ Sbjct: 190 MITLLLILNFALGMLNRMTPQLSVFVVGFPLTLTVGIFTLSLLIPML 236 >gi|253688964|ref|YP_003018154.1| flagellar biosynthetic protein FliR [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755542|gb|ACT13618.1| flagellar biosynthetic protein FliR [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 261 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 77/172 (44%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ ++ +G GL +++ ++ G +I +GL T + + + I+ Sbjct: 73 LLIQQVLIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVIARFLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L D H + L S+ T+PI + F + F+ L L+ P + Sbjct: 133 AILLFLTFDGHLWMISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLALPIIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++G+LN++ PQ+ I+ + P + +G + L L I +I H F Sbjct: 193 LLLTINLALGMLNRVAPQLSIFVVGFPITLTVGIMTLGLLIPLIPPFAEHLF 244 >gi|206563887|ref|YP_002234650.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092676|gb|AAL59405.1| BcscT [Burkholderia cenocepacia] gi|28394257|gb|AAO31732.1| BcscT [Burkholderia cenocepacia] gi|198039927|emb|CAR55905.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 269 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSF-VNMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +F V T F M++L++P Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVKLAAPVT 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + +GL+ + VPQ+ I+ S P L L + L + +VY H+ L Sbjct: 197 IVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLP-VVYASLHALL 249 >gi|167572949|ref|ZP_02365823.1| type III secretion system EscT protein [Burkholderia oklahomensis C6786] Length = 260 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 1/152 (0%) Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +Y L + EL +G + G + L G +I TA G ++ + + +P + Sbjct: 69 HYLWLALGELCVGALIGFCAAIPFWALDMAGFLIDTARGASMASVLNPLLGAQSSPFGMV 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLS 186 + L V + + + SY T+P G L FG + + + + LR + Sbjct: 129 FSQVFTLLFLVSGGFNTLIETIYASYVTLPPGAPLRFGPDALALLTQQWHLMYELCLRFA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P L ++ ++++GL+N+ Q+ ++F+S P Sbjct: 189 MPALAAILLVDMALGLVNRSAQQLNVFFLSMP 220 >gi|326622853|gb|EGE29198.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 245 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 3/226 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + I P LS IP +V+L + ++V+ P L D F A + L M ++ Sbjct: 3 RVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN-DTPLFSIAALW--LTMQQI 59 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++ ++ G I +GL+ T + L L ++ ++ +L Sbjct: 60 LIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFL 119 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + H + LV ++ T+PIG N F + F+ L L+ P + + N Sbjct: 120 TFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLN 179 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 180 LALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 225 >gi|77165625|ref|YP_344150.1| flagellar biosynthesis protein FliR [Nitrosococcus oceani ATCC 19707] gi|76883939|gb|ABA58620.1| Flagellar biosynthesis protein FliR [Nitrosococcus oceani ATCC 19707] Length = 236 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83 M +P +P+++RL A+A ++V+ P + T V LVM + +G Sbjct: 1 MAMPLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEGGL---LVMQQFLIGFAM 57 Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 L++++ G +++T +GL + M + +A + ++ L ++ L ++ H Sbjct: 58 ALVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQLYTVLITLVFLGLNGHL 117 Query: 144 QVFYALVKSYGTIPIGQEL----NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199 V L +S+ +P+G E F + + ML + +I L P + + N++ Sbjct: 118 VVIQVLAESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIAL----PAIGALSLVNLT 173 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLG 224 G++++ PQ+ + I P + LG Sbjct: 174 FGVMSRAAPQLNPFSIGFPLTLILG 198 >gi|212634379|ref|YP_002310904.1| flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3] gi|212555863|gb|ACJ28317.1| Flagellar biosynthetic protein FliR [Shewanella piezotolerans WP3] Length = 266 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 24/236 (10%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS--KLVM 74 R+ S M++ + P +VRL ++ + ++P L D++ F A + + ++ Sbjct: 20 TRISSMFMVMAVFGANTTPSRVRLLLSLTVTAAVVPVLPPMPDIELFSLSAVFVTFQQII 79 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETPL-NSLI 128 + + +G LL++ + L TG +I +QTS+G + S +TP+ + Sbjct: 80 IGVSMGFSTLLLMQTFVL----TGQII------GMQTSLGFASMIDPGSGQQTPVVANFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE---LNFGNIFSSFVNMLQTTFMIMLRL 185 ++ + +D H + +V S+ +IP+ E L +F+ FV + F L + Sbjct: 130 LLLTTMIFLAVDGHLILIKMVVASFDSIPVSMEGLSLASYRMFTEFVGYM---FGAALTM 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 S + + N+S G++ + PQ+ I+ I P + G L L++ I+ F Sbjct: 187 SLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVSGLFILWLTLTPIMAHFDE 242 >gi|89075525|ref|ZP_01161936.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] gi|89048797|gb|EAR54368.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] Length = 260 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 44/239 (18%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD---TIDLQNFVNRAYYSKLV 73 R+ S +M + ++ ++RL A+A + +LP L I+L + ++ + Sbjct: 20 TRISSMVMAMTFFGARFVSPKIRLYLALAITFAVLPVLPKVPQDIELLSLAGFIVTTQQL 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETP-LNSL 127 ++ + +G V + +++ L Q G +Q+S+G + + TP L Sbjct: 80 IIGVAMGLVTQFITQIFVLLGQILG----------MQSSLGFASMVDPANGQNTPVLGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-----------NFGNIFSSFVNMLQ 176 + +L D H ++ A+V S+ T+PIG+ + FG++F + VNM Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVVSFKTLPIGEAMLQPKDYYQLAGWFGHMFKAGVNMAL 189 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG---SLFLCLSI 232 + +L + N+S G++ + PQ+ I+ + + + LG S F+ L I Sbjct: 190 AGVIALLTV-----------NLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLGI 237 >gi|193222345|emb|CAL62040.2| Flagellar biosynthetic protein FliR [Herminiimonas arsenicoxydans] Length = 263 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 62/145 (42%) Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G G +R+ G++ G + +GL + + ++ + ++ L+ Sbjct: 82 GLTMGFAMRIVFAGVEMAGEITGMTMGLGFASFFDPQTRARSSAISQFLALLILMIYLST 141 Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199 + H V L +S+ +PI F V F ++LS P + ++ NI+ Sbjct: 142 NLHLVVLSTLAQSFELLPISSNFVSTEGFFQVVKWGGRIFSAGVQLSLPMVAALLMTNIA 201 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLG 224 +G+L + PQ+ I+ I P IG+G Sbjct: 202 LGILTRAAPQLNIFGIGFPITIGVG 226 >gi|134095089|ref|YP_001100164.1| flagellar biosynthetic protein fliR [Herminiimonas arsenicoxydans] Length = 222 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 62/145 (42%) Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G G +R+ G++ G + +GL + + ++ + ++ L+ Sbjct: 41 GLTMGFAMRIVFAGVEMAGEITGMTMGLGFASFFDPQTRARSSAISQFLALLILMIYLST 100 Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199 + H V L +S+ +PI F V F ++LS P + ++ NI+ Sbjct: 101 NLHLVVLSTLAQSFELLPISSNFVSTEGFFQVVKWGGRIFSAGVQLSLPMVAALLMTNIA 160 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLG 224 +G+L + PQ+ I+ I P IG+G Sbjct: 161 LGILTRAAPQLNIFGIGFPITIGVG 185 >gi|157961201|ref|YP_001501235.1| flagellar biosynthesis protein FliR [Shewanella pealeana ATCC 700345] gi|157846201|gb|ABV86700.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC 700345] Length = 266 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 52/236 (22%), Positives = 105/236 (44%), Gaps = 24/236 (10%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVM 74 R+ S M++ + P +VRL ++ + + P L IDL + ++ ++ Sbjct: 20 TRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAMPNIDLFSLSAAFVTAQQII 79 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETPL-NSLI 128 + + +G LL++ + L TG +I +QTS+G + S +TP+ + Sbjct: 80 IGVAMGFATLLLMQTFVL----TGQII------GMQTSLGFASMVDPSSGQQTPVVGNFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPI---GQELNFGNIFSSFVNMLQTTFMIMLRL 185 ++ + +D H + ++ S+ +IP+ G L +F+ FV + F L + Sbjct: 130 LLLTTMIFLAVDGHLLLIKMVIASFESIPVSMQGLSLASYRLFTEFVGYM---FGAALTM 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 S + + N+S G++ + PQ+ I+ I P + G L L++ I+ F Sbjct: 187 SLSAIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHFDE 242 >gi|269967108|ref|ZP_06181175.1| flagellar biosynthetic protein FliR [Vibrio alginolyticus 40B] gi|269828245|gb|EEZ82512.1| flagellar biosynthetic protein FliR [Vibrio alginolyticus 40B] Length = 254 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 5/216 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RVG+ + +P + IP+ VR A++ ++ P + ++ F + + L + Sbjct: 17 RVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSMTSLF--LAFEQA 74 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL++ + G VIS +GL + + L+ L + I L Sbjct: 75 IWGVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILGRIFLIFSTLLFL 134 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V +++S+ P+G + ++ VN+ F L L+ P + ++ N Sbjct: 135 ALEGHLLVIDIVIQSFVVWPVGSGITSLSL-QGVVNIFGWMFASSLALALPAIVSMLLAN 193 Query: 198 ISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 IS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 194 ISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 229 >gi|51894125|ref|YP_076816.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM 14863] gi|51857814|dbj|BAD41972.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM 14863] Length = 259 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 13/201 (6%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-NFVNRAYYSKLVMVELFLGCVHGL 85 P S ++P QVR+ A S VL FL I++ + +VE+ +G V G Sbjct: 26 PVFSTRFVPFQVRV----ALSFVLGFFLMPAIEVAPGRTEGVHLLTAALVEMVVGLVIGF 81 Query: 86 LIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQV 145 L + LQ G+++ +G L T L +L L+ +D HH + Sbjct: 82 LCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIALDGHHWL 141 Query: 146 FYALVKSYGTIPIGQELNFGNIFSSFVNML-QTTFMIMLRLSSPFLFFYIVFNISIGLLN 204 A +SY +P G + G +V L + ++L PF+ ++ ++ +LN Sbjct: 142 IRAFAQSYALVPAGGPVE-GTASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVAFAVLN 200 Query: 205 KLVPQIPIYFISTPYLIGLGS 225 + V Q+ I + IGLG+ Sbjct: 201 RAVAQLNI------FAIGLGT 215 >gi|204931027|ref|ZP_03221853.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320071|gb|EDZ05276.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 264 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 17 FWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 AIQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|294140999|ref|YP_003556977.1| type III secretion system apparatus protein, SpaR/YscT family [Shewanella violacea DSS12] gi|293327468|dbj|BAJ02199.1| type III secretion system apparatus protein, SpaR/YscT family [Shewanella violacea DSS12] Length = 229 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 18/179 (10%) Query: 51 LPFLWDTIDLQNFVNRAYYSKLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL 107 LP L D+Q + +A +V + E+ +G + G + + G VI T G Sbjct: 16 LPTLHAMADMQEVILQADILGVVNLYGKEILVGFLLGFCAAIPFWAIDMAGFVIDTMRGA 75 Query: 108 NLQTS----MGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN 163 ++ T MG+ S+ ++ ++ L++ F+H + A+ +SY +P G ELN Sbjct: 76 SMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVS---GGFNH-LLTAMYQSYNELPPGFELN 131 Query: 164 FGNIFSSFVNMLQTTFMIMLRL----SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +F N +++M +L + P + I+ ++++GL+N+ Q+ ++F+S P Sbjct: 132 LSQQLLTFFN---QEWLLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLSMP 187 >gi|332701285|ref|ZP_08421373.1| flagellar biosynthetic protein FliR [Desulfovibrio africanus str. Walvis Bay] gi|332551434|gb|EGJ48478.1| flagellar biosynthetic protein FliR [Desulfovibrio africanus str. Walvis Bay] Length = 263 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 52/236 (22%), Positives = 109/236 (46%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLP--GLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL---QNFV 64 +S L + R+ + ++P G ++ +P++ LC + + LW T+ Q Sbjct: 12 LSFLLTLMRISLVLFIMPFFGGKVTPVPLKAALCLILTIA------LWPTLSFPGQQLPA 65 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 N +++ E+ LG V G+++ V +Q GS+I +G ++ + ++D + T Sbjct: 66 NTWAIVVMLIGEITLGLVMGIVVNVLFAAVQTGGSLIGFQMGFSM---VNVADPMTGTN- 121 Query: 125 NSLIG----IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 S+ G ++ + ++D H + AL +S+ IP G + + M F+ Sbjct: 122 ESITGHFMYMVTFMTFLILDGHLLLLRALAESFQRIPPGGLYLSPALAREVLGMSSQIFV 181 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +++++P + + +++I L+ + PQ+ I P I G LFL L I+ Sbjct: 182 LGIKIAAPVMVAVFLVDLAIALVGRAAPQMSILSFGFPLKIITGFLFLGLMFTIMA 237 >gi|56551545|ref|YP_162384.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis ZM4] gi|56543119|gb|AAV89273.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis ZM4] Length = 265 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 5/203 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R G+ + P L + P+ VR+ A+A V LP + D + ++ L +V Sbjct: 22 RPGAAFVAAPLLGANAFPVTVRVMLALA---VGLPSVMDAHLILPDSGLVSFTGLFLVVG 78 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G G +++ T +I A+GL + + + L + I+G Sbjct: 79 EIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLTQIFTILGAFF 138 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +V+SY T+P+G +F F I + ++ P F I+ Sbjct: 139 FLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLIALPVTFSIIL 198 Query: 196 FNISIGLLNKLVPQIPIYFISTP 218 + +G L++ P + ++ + P Sbjct: 199 IQVMMGFLSRTAPALNLFAVGMP 221 >gi|309779457|ref|ZP_07674218.1| flagellar biosynthetic protein FliR [Ralstonia sp. 5_7_47FAA] gi|308921698|gb|EFP67334.1| flagellar biosynthetic protein FliR [Ralstonia sp. 5_7_47FAA] Length = 264 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/191 (19%), Positives = 85/191 (44%), Gaps = 8/191 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV + I + P + + IP +++ F + ++ L P L + V+ Y L +V Sbjct: 22 RVLAFIAIAPPFANTEIPTSIKVAFGVVITVALAPML----PVPAGVSVGSYEGLWITLV 77 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G V G +++ + G V+S +GL + + + + + L + + + A Sbjct: 78 QVLIGLVLGFCVQLVFSAISGAGEVMSVQMGLGFASLLDPTQTESSMLLGRFLSLTAVTA 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRLSSPFLFFYI 194 D H + +AL S+ +P+ GN + + F + LR++ P + + Sbjct: 138 FIAGDGHLVLLHALFDSFTALPV-SAAPLGNPGWQTLAGGGTIVFALALRIALPIIAIMM 196 Query: 195 VFNISIGLLNK 205 + N+ +L++ Sbjct: 197 IVNLGFAVLSR 207 >gi|323491457|ref|ZP_08096641.1| flagellar biosynthesis protein FliR [Vibrio brasiliensis LMG 20546] gi|323314326|gb|EGA67406.1| flagellar biosynthesis protein FliR [Vibrio brasiliensis LMG 20546] Length = 260 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 20/221 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVM 74 R+ + +M++ ++ +VRL +A + ++P L DTI+L +F + ++ Sbjct: 21 RIAAMLMVMSVTGARFVFTRVRLYLGLAITFAVMPALPAVPDTIELVSFAGFMTLLEQII 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + + Q G +Q+S+G + + TPL L Sbjct: 81 IGVAMGTVTQFMIQTFVILGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L D H ++ +V S+ +IPIG F L F + L +S Sbjct: 131 MFLATLFFLATDGHLKMIMLVVMSFKSIPIGTGSLTTVDFRELALWLGIMFKVALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L +C Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLIC 230 >gi|241761182|ref|ZP_04759271.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374801|gb|EER64262.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 265 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 5/203 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R G+ + P L + P+ VR+ A+A V LP + D + ++ L +V Sbjct: 22 RPGAAFVAAPLLGANAFPVTVRVMLALA---VGLPSVMDAHLILPDSGLVSFTGLFLVVG 78 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G G +++ T +I A+GL + + + L + I+G Sbjct: 79 EIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLTQIFTILGAFF 138 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +V+SY T+P+G +F F I + ++ P F I+ Sbjct: 139 FLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLIALPVTFSIIL 198 Query: 196 FNISIGLLNKLVPQIPIYFISTP 218 + +G L++ P + ++ + P Sbjct: 199 IQVMMGFLSRTAPALNLFAVGMP 221 >gi|167552786|ref|ZP_02346537.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322619|gb|EDZ10458.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 264 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 3/217 (1%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P LS IP +V+L + ++V+ P L D F A + L M ++ +G G Sbjct: 31 PILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--LAMQQILIGIALGFT 87 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 ++ ++ G I +GL+ T + L L ++ ++ +L + H + Sbjct: 88 MQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLI 147 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKL 206 LV ++ T+PIG N F + F+ L L+ P + + N+++GLLN++ Sbjct: 148 SLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRM 207 Query: 207 VPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 PQ+ I+ I P + +G + + + +I H F Sbjct: 208 APQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|313497811|gb|ADR59177.1| FliR [Pseudomonas putida BIRD-1] Length = 258 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 96/212 (45%), Gaps = 13/212 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRL---CFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKL 72 RV + +M +P +P ++RL + LP L +D + L+ + L Sbjct: 22 RVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPPLPEFDPLSLRGML-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G + GL +++ G +++ +G+ + + ++ + T ++ + ++ Sbjct: 75 CAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVTVISQFMTMLV 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + +++ H VF L +S+ T+P+G L N F + F L L P + Sbjct: 135 SVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLILPVIAA 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +V NI+ G++ + PQ+ I+ I P + +G Sbjct: 194 LLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMG 225 >gi|291558214|emb|CBL35331.1| Flagellar biosynthesis pathway, component FliR [Eubacterium siraeum V10Sc8a] Length = 262 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 8/219 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL- 72 LI+CRV P S S P+++R +A +++ + D + + L Sbjct: 19 LIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGDI----KYEPTGIFMMLF 74 Query: 73 -VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +M EL LG + G ++ + G +I GL++ +M + ++ ++ + Sbjct: 75 DMMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVSMPLFANVYYYM 134 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L ++ + H SY T+PIG ++ + V T + ++L++P + Sbjct: 135 FILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLTLAVKLAAPIIA 194 Query: 192 FYIVFNISIGLLNKLVPQIPIYF--ISTPYLIGLGSLFL 228 + I +G+L K VP I I+ I LIGL ++ + Sbjct: 195 IEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLI 233 >gi|332305671|ref|YP_004433522.1| flagellar biosynthetic protein FliR [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173000|gb|AEE22254.1| flagellar biosynthetic protein FliR [Glaciecola agarilytica 4H-3-7+YE-5] Length = 259 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 45/243 (18%), Positives = 101/243 (41%), Gaps = 5/243 (2%) Query: 1 MTISPEII---MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT 57 M S ++I M + L R+ + + GLS +P VR + ++++LP + Sbjct: 1 MEFSADVITQFMGDMLLPFMRISGMLATMVGLSAKTVPTTVRALLTLFITLIILPVI-PP 59 Query: 58 IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117 + + + + LV+ +L +G G + + G V++ GL + + + Sbjct: 60 VQVDEVFSVGTF-MLVIQQLIIGISLGFISTMVLNTFVLAGQVVAMQTGLGFASIVDPVN 118 Query: 118 SLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177 + + I+ L W +D H + +V S+ P+G+ F + Sbjct: 119 GINVPAVGQFYLILATLLFWALDGHLAMIRMVVMSFTAFPVGEAWLQPEQFREIAHWAGW 178 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 F+ + LS + ++ N++ G++ K PQ+ I+ + +G + + ++++ Y Sbjct: 179 MFISAVTLSLAPIVSLLIVNLAFGVMTKAAPQLNIFSLGFSIAQIMGLVIIWITMDNFTY 238 Query: 238 QFS 240 F Sbjct: 239 HFE 241 >gi|239815245|ref|YP_002944155.1| type III secretion system inner membrane R protein [Variovorax paradoxus S110] gi|239801822|gb|ACS18889.1| type III secretion system inner membrane R protein [Variovorax paradoxus S110] Length = 239 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 8/194 (4%) Query: 34 IPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLG 93 +P VR+ + SI L L + + +S L EL LG GL I + Sbjct: 10 LPASVRMLLVLGLSIALAFGLSAPVGAWMGWSELLFSALA--ELALGATLGLGILLAFGA 67 Query: 94 LQFTGSVISTAIGLNLQTSMGISDSLAETP---LNSLIGIIGLLALWVIDFHHQVFYALV 150 G ++ +G + + D + + P L S + +L ++++ HH + + Sbjct: 68 FSIAGQLLDVQLGFGIAQ---VIDPVTQRPIPVLTSAFNYLAVLVFFLLNGHHALLRGIS 124 Query: 151 KSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQI 210 S P+G + G+ + + F + L++P +F ++ ++G++ + +PQ+ Sbjct: 125 YSLERFPVGASWSIGHAVAPVLKQAAGLFSLGFALAAPVVFCILLVEFALGVVGRNLPQM 184 Query: 211 PIYFISTPYLIGLG 224 ++ + P I +G Sbjct: 185 NMFTMGIPVKILVG 198 >gi|76874664|emb|CAI85885.1| flagellar biosynthetic protein [Pseudoalteromonas haloplanktis TAC125] Length = 231 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 14/225 (6%) Query: 26 LPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV--ELFLGCVH 83 + GL +P ++++ A+ + V +P L F N + +++V ++ +G Sbjct: 1 MAGLGAKNVPTRIKMGLAIVVTFVAVPML----PPATFTNLFSFEMILVVIQQMLIGIAI 56 Query: 84 G----LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G LL+ + L G +++ GL + + S+ L+ + I+ L +V Sbjct: 57 GFASTLLLNTFVLA----GQILAMQTGLGFASVVDPSNGLSVPAVGQFYLILATLLFFVF 112 Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199 + H + +V S+ +PI + + V F L LS L +V N+S Sbjct: 113 NGHLMMIQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLSLAPLTAMLVINMS 172 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 G++ + PQ+ I+ I P+ + G + + ++ V QF +L Sbjct: 173 FGIMTRAAPQLNIFSIGFPFTLVAGLIIIWATLGNFVSQFEFQWL 217 >gi|26991042|ref|NP_746467.1| flagellar biosynthesis protein FliR [Pseudomonas putida KT2440] gi|24986074|gb|AAN69931.1|AE016632_2 flagellar biosynthetic protein FliR [Pseudomonas putida KT2440] Length = 258 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 96/212 (45%), Gaps = 13/212 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRL---CFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKL 72 RV + +M +P +P ++RL + LP L +D + L+ + L Sbjct: 22 RVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPPLPEFDPLSLRGML-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G + GL +++ G +++ +G+ + + ++ + T ++ + ++ Sbjct: 75 CAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVTVISQFMTMLV 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + +++ H VF L +S+ T+P+G L N F + F L L P + Sbjct: 135 SVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLILPVIAA 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +V NI+ G++ + PQ+ I+ I P + +G Sbjct: 194 LLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMG 225 >gi|259907618|ref|YP_002647974.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae Ep1/96] gi|224963240|emb|CAX54724.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae Ep1/96] gi|283477460|emb|CAY73376.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae DSM 12163] Length = 259 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 10/221 (4%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYYSK 71 FL++ R+ + + + P S + +VR+ A+ + ++ + D+ I L +F K Sbjct: 18 FLVMVRIAALLTVAPVFSEKSVNTRVRVGLALLIAALIGGNIPDSHIALYSFQGVWAVGK 77 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGI 130 +L +G GL +++ + ++ G +I +GL+ T S P + + + Sbjct: 78 ----QLLIGAALGLSMQLLFVAVRMAGEIIGMQMGLSFATFF--DPSAGNVPVIARFLNL 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + L V + H + L +S+ +P+ L+ G +F V F L L P Sbjct: 132 LVTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGLFL-LVQQAGLVFREGLMLGLPI 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + + N ++GLLN+L PQ+ I+ I P + +G + L L Sbjct: 191 ISLLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSL 231 >gi|315127307|ref|YP_004069310.1| flagellar biosynthesis protein FliR [Pseudoalteromonas sp. SM9913] gi|315015821|gb|ADT69159.1| flagellar biosynthesis protein FliR [Pseudoalteromonas sp. SM9913] Length = 259 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/233 (20%), Positives = 104/233 (44%), Gaps = 14/233 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R+ S IM++ G+ +P ++++ A+ + +++P L F N + +++V Sbjct: 21 RISSMIMIMAGIGAKNVPARIKMGLAVVVTFLVVPVL----PAATFTNLFSFEMILVVLQ 76 Query: 76 ELFLGCVHG----LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ +G G LL+ + L G +++ GL + + S+ ++ + I+ Sbjct: 77 QMLIGVAIGFASTLLLNTFVLA----GQILAMQTGLGFASVVDPSNGMSVPAVGQFYLIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L +V + H + +V S+ +PI + + V F L LS L Sbjct: 133 ATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWAVDHYWDIVTWGGWMFTTALVLSLAPLT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +V N++ G++ + PQ+ I+ I P+ + G + + ++ V QF +L Sbjct: 193 AMLVINMAFGIMTRAAPQLNIFSIGFPFTLVAGLVIIWATLGNFVTQFEFQWL 245 >gi|85060036|ref|YP_455738.1| flagellar biosynthesis protein FliR [Sodalis glossinidius str. 'morsitans'] gi|84780556|dbj|BAE75333.1| flagellar biosynthetic protein FliR [Sodalis glossinidius str. 'morsitans'] Length = 262 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 2/154 (1%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L + ++ +G GL +++ ++ G VI +GL+ T + L TPL + + + Sbjct: 73 LALKQILIGTALGLTMQLTFAAVRMAGEVIGLQMGLSFTTFFDPASGL-NTPLLARLLNL 131 Query: 132 GLLALWV-IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L +++ ++ H + L S+ +P+ +L F + F+ + L+ P + Sbjct: 132 LALLVFISLNGHLWLLSLLADSFHILPLDSQLMDPGAFMALARAGGIIFLNGMMLALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + NI++GLLN++ PQ+ ++ I P + +G Sbjct: 192 CMLMTLNIALGLLNRITPQLTVFVIGFPLTLTVG 225 >gi|312973833|ref|ZP_07788005.1| flagellar biosynthetic protein FliR [Escherichia coli 1827-70] gi|310332428|gb|EFP99663.1| flagellar biosynthetic protein FliR [Escherichia coli 1827-70] Length = 261 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ +Q G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVQTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|170725985|ref|YP_001760011.1| flagellar biosynthesis protein FliR [Shewanella woodyi ATCC 51908] gi|169811332|gb|ACA85916.1| flagellar biosynthetic protein FliR [Shewanella woodyi ATCC 51908] Length = 261 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 53/233 (22%), Positives = 109/233 (46%), Gaps = 24/233 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 RV S +M + + + P+++RL +M + + P L + +DL + + + +++ Sbjct: 17 RVASMLMAMAIVGANTTPVRIRLLLSMTITFAIAPVLPPMENVDLFSLSSGFIIFQQIII 76 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETP-LNSLIG 129 + +G V L+++ + L TG +I +QTS+G + S +TP + + Sbjct: 77 GVAMGFVTLLVMQTFVL----TGQII------GMQTSLGFASMVDPSSGQQTPVIGNFFL 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT---TFMIMLRLS 186 ++ + +D H + LV S+ TIPI + G +S+ + + F L +S Sbjct: 127 LLTTMIFLAVDGHLVLIRMLVVSFDTIPISDQ---GISIASYKLLAEWGAYMFGAALTMS 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + ++ N+S G++ + PQ+ I+ I P + G L L++ I+ F Sbjct: 184 MTAIVALLMINLSFGVMTRASPQLNIFAIGFPVTMVTGLFILWLTLTPIMEHF 236 >gi|292489150|ref|YP_003532037.1| flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430] gi|292900268|ref|YP_003539637.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291200116|emb|CBJ47242.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291554584|emb|CBA22215.1| Flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430] gi|312173308|emb|CBX81563.1| Flagellar biosynthetic protein FliR [Erwinia amylovora ATCC BAA-2158] Length = 259 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 8/220 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYYSK 71 FL++ R+ + + + P S + +VR+ A+ +++L + D+ I L +F K Sbjct: 18 FLVMVRIAALLTVAPVFSEKGVNTRVRVGLALLIAVLLGGNIPDSHIALYSFQGVWAVGK 77 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGI 130 +L +G GL +++ + ++ G ++ +GL+ T + P + + + Sbjct: 78 ----QLLIGAALGLSMQLLFVAVRMAGEIVGMQMGLSFATFF--DPNAGNVPVIARFLNL 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L V + H + L +S+ +P+ F V F L L P + Sbjct: 132 LVTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGFFLLVQQAGLVFREGLMLGLPII 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + N ++GLLN+L PQ+ I+ I P + +G + L L Sbjct: 192 SLLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSL 231 >gi|163750538|ref|ZP_02157776.1| flagellar biosynthesis protein [Shewanella benthica KT99] gi|161329693|gb|EDQ00682.1| flagellar biosynthesis protein [Shewanella benthica KT99] Length = 265 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 103/227 (45%), Gaps = 8/227 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RV S M++ + P++VR +MA + ++P L ++ F A + L +++ Sbjct: 21 RVSSMFMVMVVFGANTTPVRVRALLSMAITFAIVPVLPPVENVALFAASAIFITLQQLLI 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGIIGLL 134 + +G V ++++ + L Q G + T++G SM S +TP + +L ++ + Sbjct: 81 GISMGFVTLMVMQCFVLAGQIIG--MQTSLGF---ASMVDPSSGQQTPVIGNLFLLLTTM 135 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 +D H + LV S+ TIPI + + F L +S + + Sbjct: 136 IFLAVDGHLVMIRMLVLSFETIPISDQGLSVTSYRLLAEWGGYMFGAALTMSMTPIVALL 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + N+S G++ + PQ+ I+ I P + G + L L++ I+ F Sbjct: 196 LINLSFGVMTRASPQLNIFAIGFPVTMVSGLVILWLTLTPIMEHFGE 242 >gi|119469998|ref|ZP_01612803.1| flagellar biosynthesis protein R [Alteromonadales bacterium TW-7] gi|119446708|gb|EAW27981.1| flagellar biosynthesis protein R [Alteromonadales bacterium TW-7] Length = 259 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 14/233 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R+ S IM++ GL +P +++L S+V+ + + F N + +++V Sbjct: 21 RISSMIMIMAGLGAKNVPTRIKL----GLSVVVTLLVVPVLPPATFTNLFSFEMILVVIQ 76 Query: 76 ELFLGCVHG----LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ +G G LL+ + L G +++ GL + + S+ + + I+ Sbjct: 77 QMLIGIAIGFASTLLLNTFVLA----GQILAMQTGLGFASVIDPSNGASVPAVGQFFLIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L +V + H + +V S+ +PI + + V F L LS L Sbjct: 133 ATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLSLAPLT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +V NIS G++ + PQ+ I+ I P+ + G + + ++ + QF +L Sbjct: 193 AMLVINISFGIMTRAAPQLNIFAIGFPFTLVAGLVIIWATLGNFILQFEFQWL 245 >gi|307293816|ref|ZP_07573660.1| flagellar biosynthetic protein FliR [Sphingobium chlorophenolicum L-1] gi|306879967|gb|EFN11184.1| flagellar biosynthetic protein FliR [Sphingobium chlorophenolicum L-1] Length = 260 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 7/233 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL---QNFVNRAYYSKLVM 74 R G+ + P +P+Q+RL ++A + L +++ + + V LV Sbjct: 22 RPGAAFIAAPVFGAPAVPLQLRLILSLALGMAAL----NSVHIVLPADGVASFQGVMLVA 77 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ G G +++ G I +GLN + S A + + I+ Sbjct: 78 GEVLAGLAIGFAVQIGYAAALVAGEAIGNTMGLNFAAMVDPSSGQATQAVGQFLSILSTF 137 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 L +D H + +V+SY +P G + + + L ++ P F + Sbjct: 138 LLLAMDGHLMLVSFVVQSYQALPPGGAMLGNDAIWHLIEFGGALLGAGLTIALPVGFALV 197 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + I +G+L + P + ++ + P + G + L ++ ++ + + G Sbjct: 198 LVQIVMGMLARTAPALNLFSVGMPVALMAGLILLAVTAPVMGEGITAALKAGL 250 >gi|262360424|gb|ACY57145.1| type III secretion apparatus protein [Yersinia pestis D106004] Length = 185 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 7/80 (8%) Query: 143 HQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL----SSPFLFFYIVFNI 198 +QV AL SY ++PIGQ + + + LQT + +M L + P L ++ ++ Sbjct: 63 NQVLAALYGSYDSLPIGQGIQPA---ADLLLFLQTEWQMMFELCLCFALPALLVMVLADL 119 Query: 199 SIGLLNKLVPQIPIYFISTP 218 S+GL+N+ Q+ ++F++ P Sbjct: 120 SLGLINRSARQLNVFFLAMP 139 >gi|260776471|ref|ZP_05885366.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC BAA-450] gi|260607694|gb|EEX33959.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC BAA-450] Length = 260 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 107/238 (44%), Gaps = 24/238 (10%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVM 74 R+ + +M++ ++ +VRL +A + ++P + DTI+L +F + ++ Sbjct: 21 RIAAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPVIPAVPDTIELLSFQGFMTLLEQII 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G + +I+ + + Q G +Q S+G + + TPL L Sbjct: 81 IGVAMGTITQFMIQTFVILGQILG----------MQASLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ ++PIG LN + F L F + L +S Sbjct: 131 MFLATMFFLATDGHLKMIMLVVMSFKSLPIGSGSLNSVD-FRELALWLGIMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + N+S G++ + PQ+ I+ + + + +G L LC II FSH L+ Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALIVG-LLLCW--YIIAGLFSHYELF 244 >gi|224826620|ref|ZP_03699721.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002] gi|224601221|gb|EEG07403.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002] Length = 258 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 +L +G GL++RV ++ G V+ T +GL + ++ + ++ + L Sbjct: 78 QLLIGLALGLVMRVVITAVEMAGFVMGTQMGLGFASFYDPINAAQVPTIARILTLFTFLL 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H V L++S+ T+PIG L + + F L L+ P + +V Sbjct: 138 FLLMGGHQVVIEILLESFRTLPIGMTLP-PDRLKALAEWGGHIFNWGLWLALPVVAALLV 196 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCL-----SIEIIVYQFSHSFLYG 246 N++IG++ + PQ I+ P L+G +L+L + +IE I Y+ + +F+ G Sbjct: 197 TNLAIGVMTRASPQFNIFTFGFPLTLLVGFAALYLSVPLMVPAIESI-YREAFAFMQG 253 >gi|149377873|ref|ZP_01895602.1| Flagellar biosynthesis pathway, component FliR [Marinobacter algicola DG893] gi|149357815|gb|EDM46308.1| Flagellar biosynthesis pathway, component FliR [Marinobacter algicola DG893] Length = 260 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/202 (20%), Positives = 93/202 (46%), Gaps = 4/202 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ S +M++P + +P +VRL A+ +I+++P + + F A + + ++ Sbjct: 23 RLVSFMMVIPFIGTQLVPARVRLGLALIITILVVPMIPPVPQVDAF--SADGVVITLQQI 80 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G + G +I+ +GL + + ++ ++ L + I L Sbjct: 81 LIGVGMGFALTALFQLFVVAGQMIAMQMGLGFASMVDPANGVSVPVLAQIYTITITLLYL 140 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 ++ H F ++S+ T+PIG E L ++ + + F+ + L+ P + + Sbjct: 141 AMNGHLVAFEVFIESFRTMPIGLEGLGQAGVWQ-LAHRISWIFVSAVLLALPAVTAVFIV 199 Query: 197 NISIGLLNKLVPQIPIYFISTP 218 NIS G++ + PQ+ I+ + P Sbjct: 200 NISFGVMTRAAPQMNIFALGFP 221 >gi|89094443|ref|ZP_01167383.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92] gi|89081335|gb|EAR60567.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92] Length = 256 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/209 (20%), Positives = 95/209 (45%), Gaps = 6/209 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMV 75 R+GS M +P L + ++RL A+A + V+ P L + +Y ++ V+V Sbjct: 22 RIGSFFMAVPLLGSQLVNARIRLMLALAVTAVIAPMLPEMPAFNGLSVESYLIIAQQVIV 81 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 LG + + +V+ LG G +I+ +GL + ++ ++ L + ++ Sbjct: 82 GAMLGFLFQVFYQVFVLG----GQMIAMQMGLGFASMTDPANGISVVMLGQFYLTLIMMI 137 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H + +V+S+ +P+ + + F F + ++ P + +V Sbjct: 138 FVALNGHLIMIEIVVRSFEVLPVSLQAIDRDSFMKVALSGTWMFSAAMLMALPAVTALLV 197 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLG 224 N++ G++++ PQ+ I + P+ + LG Sbjct: 198 VNMAFGIMSRAAPQLNILAVGFPFTMVLG 226 >gi|90579939|ref|ZP_01235747.1| flagellar biosynthesis protein [Vibrio angustum S14] gi|90438824|gb|EAS64007.1| flagellar biosynthesis protein [Vibrio angustum S14] Length = 260 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 44/239 (18%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD---TIDLQNFVNRAYYSKLV 73 R+ S +M + ++ ++RL A+A + +LP L I+L + ++ + Sbjct: 20 TRISSMMMAMTFFGARFVSPKIRLYLALAITFAVLPVLPKVPQDIELLSLAGFIVTTQQL 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETP-LNSL 127 ++ + +G V + +++ L Q G +Q+S+G + + TP L Sbjct: 80 IIGVAMGLVTQFITQIFVLLGQILG----------MQSSLGFASMVDPANGQNTPVLGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-----------NFGNIFSSFVNMLQ 176 + +L D H ++ A+V S+ T+PIG+ + FG++F + VNM Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVLSFKTLPIGEAMLQPKDYYQLAGWFGHMFKAGVNMAL 189 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG---SLFLCLSI 232 + +L + N+S G++ + PQ+ I+ + + + LG S F+ L I Sbjct: 190 AGVIALLTV-----------NLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLGI 237 >gi|82543589|ref|YP_407536.1| flagellar biosynthesis protein FliR [Shigella boydii Sb227] gi|81245000|gb|ABB65708.1| flagellar biosynthesis [Shigella boydii Sb227] gi|332096912|gb|EGJ01901.1| flagellar biosynthetic protein FliR [Shigella boydii 3594-74] Length = 261 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + V+ P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|74312490|ref|YP_310909.1| flagellar biosynthesis protein FliR [Shigella sonnei Ss046] gi|73855967|gb|AAZ88674.1| flagellar biosynthesis [Shigella sonnei Ss046] gi|320184488|gb|EFW59292.1| Flagellar biosynthesis protein FliR [Shigella flexneri CDC 796-83] gi|323168929|gb|EFZ54609.1| flagellar biosynthetic protein FliR [Shigella sonnei 53G] Length = 261 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + V+ P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|310764876|gb|ADP09826.1| Flagellar biosynthetic protein FliR [Erwinia sp. Ejp617] Length = 259 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 8/220 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYYSK 71 FL++ R+ + + + P S + +VR+ A+ + ++ + D+ I L +F K Sbjct: 18 FLVMVRIAALLTVAPVFSEKSVNTRVRVGLALLIAALIGGNIPDSHIALYSFQGVWAVGK 77 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGI 130 +L +G GL +++ + ++ G +I +GL+ T S P + + + Sbjct: 78 ----QLLIGAALGLSMQLLFVAVRMAGEIIGMQMGLSFATFF--DPSAGNVPVIARFLNL 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L V + H + L +S+ +P+ F V F L L P + Sbjct: 132 LVTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGFFLLVQQAGLVFREGLMLGLPII 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + N ++GLLN+L PQ+ I+ I P + +G + L L Sbjct: 192 SLLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSL 231 >gi|15616706|ref|NP_239918.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386790|sp|P57186|FLIR_BUCAI RecName: Full=Flagellar biosynthetic protein fliR gi|25346394|pir||D84939 flagellar biosynthetic protein fliR [imported] - Buchnera sp. (strain APS) gi|10038769|dbj|BAB12804.1| flagellar biosynthetic protein fliR [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 258 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ ++ +G V G ++ + +G +I +GL+ T + + + ++ + I+ Sbjct: 73 LILQQILIGIVLGFTAQLLFATINLSGEIIGLQMGLSFATFFNNNSQIGTSIISRFLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L ++ H + ++ S+ ++PI G LN NIF + + F+ L L P + Sbjct: 133 ALFVFITLNMHLYLISIVIDSFYSMPIDGYFLNV-NIFFILLKFSSSIFLNGLLLVLPIM 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + + + LLN+L PQI I+ I P + LG L L I +++ Sbjct: 192 IILLSISFVMSLLNRLSPQISIFSIGFPLNLILGMLMLYFLIPVML 237 >gi|219681462|ref|YP_002467847.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682018|ref|YP_002468402.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471137|ref|ZP_05635136.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621751|gb|ACL29907.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624305|gb|ACL30460.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085826|gb|ADP65908.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086399|gb|ADP66480.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086978|gb|ADP67058.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 258 Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 2/166 (1%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ ++ +G V G ++ + +G +I +GL+ T + + + ++ + I+ Sbjct: 73 LILQQILIGIVLGFTAQLLFATINLSGEIIGLQMGLSFATFFNNNSQIGTSIISRFLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L ++ H + ++ S+ ++PI G LN NIF + + F+ L L P + Sbjct: 133 ALFVFITLNMHLYLISIVIDSFYSMPIDGYFLNV-NIFFILLKFSSSIFLNGLLLVLPIM 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + + + LLN+L PQI I+ I P + LG L L I +++ Sbjct: 192 IILLSISFVMSLLNRLSPQISIFSIGFPLNLILGMLMLYFLIPVML 237 >gi|237653574|ref|YP_002889888.1| flagellar biosynthetic protein FliR [Thauera sp. MZ1T] gi|237624821|gb|ACR01511.1| flagellar biosynthetic protein FliR [Thauera sp. MZ1T] Length = 265 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/195 (20%), Positives = 88/195 (45%), Gaps = 8/195 (4%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 P S + +++RL + ++ +LP L + + A +++ ++ +G G Sbjct: 31 PVFSNRGVSVRIRLAIGLGVAMAVLPVLPPMPQVPPGGGLGLAIFAQ----QILIGIAIG 86 Query: 85 LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGIIGLLALWVIDFHH 143 ++R+ + G++I +GL+ D+ +T L+ + ++ L ID H Sbjct: 87 FVMRIVFAAVDMAGALIGMQMGLSFAVFFD-PDAGGQTAVLSDFLNLLATLIFLAIDGHL 145 Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203 + LV+S+ +P+ + ++ T F L LS P + +V NI++G+L Sbjct: 146 LMIDLLVRSFEWLPVATDAVDAGGWAFLARSGITVFSAGLLLSLPVIAVLLVANIALGVL 205 Query: 204 NKLVPQIPIYFISTP 218 + PQ+ ++ + P Sbjct: 206 TRAAPQLNLFAVGFP 220 >gi|260778658|ref|ZP_05887550.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC BAA-450] gi|260604822|gb|EEX31117.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC BAA-450] Length = 256 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS----MGISDSLAETPLNSLIGII 131 EL +G + G + + G VI T G ++ T MG+ S+ ++G++ Sbjct: 72 ELLIGLIVGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSVFGMFFTQILGVL 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFL 190 L++ + + AL +SY +P L+F SF++ Q + L + P + Sbjct: 132 FLVS----GGFNALLTALYQSYTVLPPESALSFNQDLLSFISQQWQMMSDMCLSFALPAM 187 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP 218 I+ ++++GL+N+ V Q+ ++F+S P Sbjct: 188 VVMIMVDVALGLVNRSVEQLNVFFLSMP 215 >gi|54307251|ref|YP_128271.1| flagellar biosynthetic protein FliR [Photobacterium profundum SS9] gi|46911671|emb|CAG18469.1| Hypothetical flagellar biosynthetic protein FliR [Photobacterium profundum SS9] Length = 259 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 101/229 (44%), Gaps = 13/229 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW-----DTIDLQNFVNRAYYSKL 72 R+G+ ++++P S IP QVR+ A S++ P + D + L + L Sbjct: 22 RLGAAMLMMPVFGGSTIPTQVRVGLAFCISLLAAPLMPPMPSVDPLSLDALI-------L 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G + GL++ + G ++S +GL + S + ++ L + Sbjct: 75 GVQQMIIGGIMGLMLELLFGVFTTMGQILSMQMGLGMAMSNDPINGVSIPTLGKYYQLYI 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL +D H +V+S+ P+G E+ + S V L L+ P + Sbjct: 135 LLLFLALDGHLVALDVVVQSFNVWPVG-EMPSQDALYSVVMRLGWLIAAAFLLALPAVCA 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ N + G++N+ PQ+ ++ + P + LG + L ++ I F+ Sbjct: 194 MLLVNGAFGMMNRAAPQLNVFALGFPMTMLLGLMCLLITTSSIPENFTR 242 >gi|331006681|ref|ZP_08329959.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC1989] gi|330419513|gb|EGG93901.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC1989] Length = 258 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 14/212 (6%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-----IDLQNFVNRA 67 FL + R+ S M P S + ++RL ++ +I+++P L ID+ F+ Sbjct: 17 FLPLVRLASFFMAAPIFSTRIVSTRIRLILTLSITILIVPILPPAPLVSGIDVSMFI--- 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V ++ +G G +V G I+ +GL + S+ ++ T ++ Sbjct: 74 ----IVAQQILIGVALGFTFQVVFQLFVLAGQYIAMKLGLGFASMNDPSNGVSVTIVSQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLS 186 + L + H + LV S+ IPIG ++ NI+ V + F L +S Sbjct: 130 YLLTTTLLFLSFNGHLILIQILVDSFTAIPIGTVGISTSNIY-RIVELGGWMFGSALVIS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P L +V N++ G++++ PQ+ I+ + P Sbjct: 189 MPVLTALLVVNVAFGVMSRSAPQMNIFAVGFP 220 >gi|134280964|ref|ZP_01767674.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305] gi|125657195|gb|ABN48683.1| FliR [Burkholderia pseudomallei] gi|134247986|gb|EBA48070.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305] Length = 258 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 39/200 (19%), Positives = 88/200 (44%), Gaps = 10/200 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+ + + P + S +P ++R+ A+ +++ LP + D + + F R + + Sbjct: 20 CRILAALSAAPFIGESTVPARMRVTIALFLALIALPAV-DPVAIPVFSARGALAA--AEQ 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG---IIGL 133 + +G + G+L G ++++ +GL + ++D L + + G + + Sbjct: 77 ILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAV---MNDPLNGATSDVVSGFMLVASI 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L + ID H V L S+ P+G ++ ++ F + L++P +F Sbjct: 134 LLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSL-KPLAYQAAWLFSTTMLLAAPLVFAT 192 Query: 194 IVFNISIGLLNKLVPQIPIY 213 +V I L++ P I ++ Sbjct: 193 VVLQIGKSYLSRATPSINLF 212 >gi|347245|gb|AAC36861.1| fliR [Escherichia coli] Length = 261 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLAVG 225 >gi|170737010|ref|YP_001778270.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3] gi|169819198|gb|ACA93780.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3] Length = 265 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 46/206 (22%), Positives = 102/206 (49%), Gaps = 8/206 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAY 68 ++F CR+ + + P L +P+++RL A+ ++ + P + IDL A Sbjct: 14 TIFWPFCRIAAALAASPILGDVMVPVRLRLLIALFLALAIQPGIPTMPVIDLLQLEGVAA 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNL-QTSMGISDSLAETPLNSL 127 ++ V++ LG V L++ LQ G++ S+ +GL++ Q + ++ +A+ L S+ Sbjct: 74 MAEQVLIGGLLGFVFHLVL----CALQIFGTIASSQLGLSMAQINDPMNGQMADV-LTSV 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + +D H + + +S+ P+G+ + + F + L+ Sbjct: 129 MYVVFILLFFAVDGHLILTSVIARSFAVWPVGRFAFDLDALKHLAFAVGWIFSAAVALAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIY 213 P +F +V + +GLLN++ P + I+ Sbjct: 189 PVMFATLVVQVGLGLLNRVAPALNIF 214 >gi|149195094|ref|ZP_01872186.1| Flagellar biosynthesis protein FliR [Caminibacter mediatlanticus TB-2] gi|149134807|gb|EDM23291.1| Flagellar biosynthesis protein FliR [Caminibacter mediatlanticus TB-2] Length = 254 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 7/219 (3%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T+ ++ +++ L+ R+ S + LP + IPM V+ ++ SI+ P + Sbjct: 4 TLLSDVNVVTFLLLFIRISSFLSFLPFFNYMNIPMNVKAALSIWLSILFFPIVPKVNFEI 63 Query: 62 NFVN--RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 N +N A ++++ F+G L+ + L+F IS +G + + + Sbjct: 64 NLINILLAIFNEIAF-AFFVGMALQLIFDI----LKFAAEQISFVMGFTMANVIDPNFGG 118 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 T L+ I +L H L K +P G N+ I+ F+ + F Sbjct: 119 QSTILSQFFIWIAILVFLTFGGDHLEILLLSKFMSNLPFGAFFNYHKIYEYFLVYMGKYF 178 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 MI + L+ P + ++ +I G++ K +PQ + + P Sbjct: 179 MIGVGLAFPIIAISLMSDIIFGMIMKTMPQFNLLVVGFP 217 >gi|34498579|ref|NP_902794.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC 12472] gi|34104433|gb|AAQ60791.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC 12472] Length = 252 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 3/165 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 +L +G G ++R+ ++ TG +I GL + L+ ++ + Sbjct: 72 QLLIGLSMGFVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAAQVPVLSQMLSLFTFFL 131 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D HH V AL S+ +PIG + I + F + L+ P + ++ Sbjct: 132 FLAFDGHHVVLGALAHSFQVLPIGMPMPAQGI-KALTLWGAHLFEWGVWLAMPIIGALLI 190 Query: 196 FNISIGLLNKLVPQIPIYFISTPY--LIGLGSLFLCLSIEIIVYQ 238 N++IG++ + PQ I+ P +IG +L+L L + I V + Sbjct: 191 TNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVIE 235 >gi|315654596|ref|ZP_07907502.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC 51333] gi|315491060|gb|EFU80679.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC 51333] Length = 248 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%) Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 +++ +G +++R+ LQ GS+I G + + + + + + Sbjct: 67 LIQALIGFAMAVMVRIIVATLQMAGSLIDFEGGFAMAQAFDPLTMTNQATFGRVYELSAM 126 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L+ + + + L +S+ +PIG + GN V + + ++ P L Sbjct: 127 AMLFATNGYQLLILGLARSFNAMPIGAAFDMGNYADRLVFRFGELMVASIEIAGPLLLVL 186 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLI 221 + ++ +GLL K+ P + + + P I Sbjct: 187 FLTDMGLGLLTKVAPAMNAFTLGFPLKI 214 >gi|319944174|ref|ZP_08018450.1| flagellar biosynthesis protein FliR [Lautropia mirabilis ATCC 51599] gi|319742469|gb|EFV94880.1| flagellar biosynthesis protein FliR [Lautropia mirabilis ATCC 51599] Length = 253 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 38/176 (21%), Positives = 82/176 (46%), Gaps = 5/176 (2%) Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 +F + A++ L+ E+ +G GL+ R+ ++ G +I +G + S Sbjct: 64 SFDDPAFF-VLMASEVMIGLAIGLVCRMLLASVEMAGEIIGLQMGFSFAAFFDPSTGSNS 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP--IGQELNFGNIFSSFVNMLQTTF 179 + L + L + VI+ + A + S +P +G + G + V + F Sbjct: 123 NAIGRLFNTMSLTSFAVINGPLLLVAATMNSLERMPANMGTQQFLGRLDIGAV--ISQVF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + L ++ P++ + N+S+GL++++ PQ+ ++ I P IG G + L L + ++ Sbjct: 181 ELGLLMALPYMALLLFVNLSLGLISRVAPQLNVFAIGFPITIGSGLMLLTLGMPML 236 >gi|261252334|ref|ZP_05944907.1| flagellar biosynthesis protein FliR [Vibrio orientalis CIP 102891] gi|260935725|gb|EEX91714.1| flagellar biosynthesis protein FliR [Vibrio orientalis CIP 102891] Length = 260 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 46/221 (20%), Positives = 98/221 (44%), Gaps = 20/221 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVM 74 R+ + +M++ ++ +VRL +A + ++P + DTI+L +F + ++ Sbjct: 21 RIAAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPAIPAVPDTIELLSFAGFMTLLEQII 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + + Q G +Q+S+G + + TPL L Sbjct: 81 IGVAMGTVTQFMIQTFVILGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L D H ++ +V S+ ++PIG F L F + L +S Sbjct: 131 MFLSTLFFLTTDGHLKMIMLVVMSFKSLPIGTGSLTTVDFRELALWLGIMFKVALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L +C Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLIC 230 >gi|298346008|ref|YP_003718695.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC 43063] gi|304390234|ref|ZP_07372188.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657499|ref|ZP_07910381.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236069|gb|ADI67201.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC 43063] gi|304326716|gb|EFL93960.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491971|gb|EFU81580.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 248 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%) Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 +++ +G +++R+ LQ GS+I G + + + + + + Sbjct: 67 LIQALIGFAMAVMVRIIVATLQMAGSLIDFEGGFAMAQAFDPLTMTNQATFGRVYELSAM 126 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L+ + + + L +S+ +PIG + GN V + + ++ P L Sbjct: 127 AMLFATNGYQLLILGLARSFNAMPIGAAFDMGNYADRLVFRFGELMVASIEIAGPLLLVL 186 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLI 221 + ++ +GLL K+ P + + + P I Sbjct: 187 FLTDMGLGLLTKVAPAMNAFTLGFPLKI 214 >gi|462612|sp|P34202|FLIR_PECCC RecName: Full=Flagellar biosynthetic protein fliR; AltName: Full=Flagellar biosynthetic protein mopE gi|397347|emb|CAA51478.1| mopE [Pectobacterium carotovorum] Length = 261 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/153 (20%), Positives = 69/153 (45%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ ++ +G GL +++ ++ G +I +GL T + + + I+ Sbjct: 73 LLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARFLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L D H + L S+ T+PI + F + F+ L L+ P + Sbjct: 133 AILLFLTFDGHLWMISLLADSFYTLPISANPIISHAFLALARAGGLIFINGLMLALPIIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++G+LN++ PQ+ I+ + P + +G Sbjct: 193 LLLTINLALGMLNRVAPQLSIFVVGFPITLTVG 225 >gi|194429944|ref|ZP_03062454.1| flagellar biosynthetic protein FliR [Escherichia coli B171] gi|194412033|gb|EDX28345.1| flagellar biosynthetic protein FliR [Escherichia coli B171] gi|323158571|gb|EFZ44585.1| flagellar biosynthetic protein FliR [Escherichia coli E128010] Length = 261 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGRLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|261821161|ref|YP_003259267.1| flagellar biosynthesis protein FliR [Pectobacterium wasabiae WPP163] gi|261605174|gb|ACX87660.1| flagellar biosynthetic protein FliR [Pectobacterium wasabiae WPP163] Length = 261 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 32/153 (20%), Positives = 69/153 (45%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ ++ +G GL +++ ++ G +I +GL T + + + I+ Sbjct: 73 LLIQQILIGITLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMPVIARFLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L D H + L S+ T+PI + F + F+ L L+ P + Sbjct: 133 AILLFLTFDGHLWLISLLADSFHTLPISTSPINSHAFLALARAGGLIFINGLMLALPIIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++G+LN++ PQ+ I+ + P + +G Sbjct: 193 LLLTINLALGMLNRMAPQLSIFVVGFPITLTVG 225 >gi|156933430|ref|YP_001437346.1| flagellar biosynthesis protein FliR [Cronobacter sakazakii ATCC BAA-894] gi|156531684|gb|ABU76510.1| hypothetical protein ESA_01248 [Cronobacter sakazakii ATCC BAA-894] Length = 262 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 104/231 (45%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS I ++V++ A+ +I L P + + ++ F + L Sbjct: 17 FWPLLRVLALISTAPILSERSISIRVKIGLALLITIALAPNIPGS-NVPIFSLEGLW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T L L I ++ Sbjct: 74 GLQQILIGVAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLARFIDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L ++ H + L ++ T+PIG E N F + F+ + L+ P + Sbjct: 134 MLLFLTVNGHLWLISILADTFHTLPIGGEAINSNAFMALTRAGGLIFINGVMLALPMITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ ++ I P + +G + L + +I H F Sbjct: 194 LLSLNLALGLLNRMAPQLTVFAIGFPLTLSIGIIVLAALMPLIAPFCEHLF 244 >gi|310659025|ref|YP_003936746.1| flir [Clostridium sticklandii DSM 519] gi|308825803|emb|CBH21841.1| FliR [Clostridium sticklandii] Length = 262 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/207 (20%), Positives = 95/207 (45%), Gaps = 3/207 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ RV I + P + IP+ V++ ++ S ++LPFL ++ + + Sbjct: 18 LILSRVIGFISVAPVYGRNGIPLYVKIGLSIIVSYIILPFL--VFEISTPIGSPELIFMS 75 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ G GL+ +++ G++I +GL++ T + + I Sbjct: 76 FKEVITGLGLGLIAQLFFSIFASAGAIIDMELGLSMSQVYDPQIGGQVTVTSKFLDIFAY 135 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT-TFMIMLRLSSPFLFF 192 L ID HH + A++ S+ +P+G + F +F + L + F+ + ++ P + Sbjct: 136 LIFLYIDGHHYLMRAIINSFYILPLGSAQISNDNFINFTSKLVSYIFVSAITIAIPIIIS 195 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPY 219 + N+ + + K++PQ+ ++ + P+ Sbjct: 196 IFLGNLLLAFMAKIMPQMNVFIVGMPF 222 >gi|34498064|ref|NP_902279.1| type III secretion system EscT protein [Chromobacterium violaceum ATCC 12472] gi|34103919|gb|AAQ60279.1| type III secretion system EscT protein [Chromobacterium violaceum ATCC 12472] Length = 257 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 143 HQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201 +++ A+ +SY T+P G +++ S F Q + + LR S P + ++ ++++G Sbjct: 141 NELLEAIYQSYVTLPPGAAIHYSPEALSFFYRQWQLMYELCLRFSMPAIVVILLVDMALG 200 Query: 202 LLNKLVPQIPIYFISTP 218 L+N+ Q+ ++F+S P Sbjct: 201 LVNRSAQQLNVFFLSMP 217 >gi|296282254|ref|ZP_06860252.1| flagellar biosynthetic protein FliR [Citromicrobium bathyomarinum JL354] Length = 261 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 7/216 (3%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSI---VLLPFLWDTIDLQN 62 E + + ++ RVG+ ++ P S +P+ VR+ F A +I + LP + L Sbjct: 12 EADIWRVVFLMTRVGAALLAAPFFGASNVPVVVRISFTGAMAIFISIWLPEVATPPALLT 71 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 + ++ L LG V + T+ + VI ++GL++ T+ + + T Sbjct: 72 LDGMLALAGEALIGLMLGFVLQIAFAAPTIAAE----VIGGSMGLSMATTTDPNGGGSTT 127 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 I+ L + H + +SY P GQ F + T F Sbjct: 128 AFGQYFIIVLTLIFLATNAHLHWLALVTESYRAFPPGQTWIGPERFETIFMFGGTLFETA 187 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 LR++ P ++ I G+L++ P + ++ + P Sbjct: 188 LRIALPVTLILLLVQIVTGILSRSAPSLNLFALGLP 223 >gi|163800126|ref|ZP_02194027.1| putative flagellar biosynthetic protein FliR [Vibrio sp. AND4] gi|159175569|gb|EDP60363.1| putative flagellar biosynthetic protein FliR [Vibrio sp. AND4] Length = 258 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL--VMV 75 RVG+ + +P + IP+ VR A++ ++ P + +++ F + + L M Sbjct: 21 RVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPTMPEVELFSMTSIFLALEQAMW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 L G + +L V+T+ G IS +GL + + L+ L + I L Sbjct: 81 GLMFGLILHMLFNVFTM----LGQTISLQMGLGMAVMNDPVNGLSVAILGRMFLIFSTLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H + +++S+ P+G + ++ VN+ F L L+ P + ++ Sbjct: 137 FLALEGHLLIIDIVIQSFVVWPVGSGITALSL-QGVVNIFGWMFASALALALPAIASMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 NIS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 196 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|238764400|ref|ZP_04625350.1| Flagellar biosynthetic protein fliR [Yersinia kristensenii ATCC 33638] gi|238697426|gb|EEP90193.1| Flagellar biosynthetic protein fliR [Yersinia kristensenii ATCC 33638] Length = 260 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 5/236 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P LS I +V++ A+ + ++ P L +++ + A + + Sbjct: 17 FWPLIRILALISTAPVLSEKQINRKVKVGLAILITFLIAPSL-PPVNIPLVSSGAVW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G GL ++ ++ +G VI +GL+ T S L L+ ++ Sbjct: 74 AGQQILIGAAIGLTMQFAFAAIRLSGEVIGLQMGLSFATFFDPSGGPNMPVLARLLNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L D H + L S+ T+PI E GN F + FM L L+ P + Sbjct: 134 MLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALAQAGSLIFMNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + N+++G+LN++ PQ+ ++ I P + +G + L L++ ++ H L+G F Sbjct: 194 LLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLAMPLLAPFTEH--LFGEF 247 >gi|253998480|ref|YP_003050543.1| flagellar biosynthetic protein FliR [Methylovorus sp. SIP3-4] gi|253985159|gb|ACT50016.1| flagellar biosynthetic protein FliR [Methylovorus sp. SIP3-4] Length = 256 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 18/223 (8%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 + R+ + I + P LS I +V++ A+ ++ LLP L L F ++ LV+ Sbjct: 20 MTRILAMIAVAPVLSHRSISARVKISMALMMTLALLPSLPQPPLLDIF---SWRGMLVLA 76 Query: 76 E-LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQ-----TSMGISDSLAE--TPLNSL 127 + + +G G +R+ ++ G +I +GL + G S+++++ L +L Sbjct: 77 QQMVIGFAIGFSMRIVFAAVEMAGQMIGMTMGLGFAMFYDPQTQGQSNAISQFMVLLTTL 136 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I L+L D H + A+++S+ P+ E G F N F L +S Sbjct: 137 I----FLSL---DGHLLMISAVMESFANFPLSAEWQGGLDFMKMANWGGKIFSAGLLISL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 P + ++ N+++G+L + PQ+ ++ I P I +G + + L Sbjct: 190 PAIAALLITNMALGILTRTAPQLNLFGIGFPVTIAIGYVVVAL 232 >gi|251789176|ref|YP_003003897.1| flagellar biosynthetic protein FliR [Dickeya zeae Ech1591] gi|247537797|gb|ACT06418.1| flagellar biosynthetic protein FliR [Dickeya zeae Ech1591] Length = 260 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 3/206 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P S I +V+L + +I ++P + T + F + + Sbjct: 17 FWPLVRILALISTAPIFSERAITRRVKLGLGVLITIAIMPAIPHT-SIPIFSAAGIW--M 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G + G +++ ++ G +I +GL+ T S + + ++ Sbjct: 74 LFQQVVIGVMLGFTMQLAFTAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVIARFMNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL ++ H + L S+ TIPIG GN+F S F L L+ P + Sbjct: 134 LLLFLTMNGHLWLISLLADSFHTIPIGAGPVSGNVFMSLAEAGGRIFSNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP 218 + N+++GLL++L PQ+ I+ I P Sbjct: 194 LLTINMALGLLSRLAPQLTIFAIGFP 219 >gi|239826630|ref|YP_002949254.1| flagellar biosynthesis protein FliR [Geobacillus sp. WCH70] gi|239806923|gb|ACS23988.1| flagellar biosynthetic protein FliR [Geobacillus sp. WCH70] Length = 257 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 4/163 (2%) Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLIGIIGLLALWVIDFH 142 GL + +Q G +I +G + + + A++PL + LL L +D H Sbjct: 79 GLFAYMIVSAIQIVGGLIDFQMGFAIANVID-PQTGAQSPLVGQYLYTFALLLLLSVDGH 137 Query: 143 HQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 H + + SY IP+ + G++ V T F+I ++S P + + ++++ Sbjct: 138 HLLLDGVFYSYRFIPLDHWPHFDHGHVAKYIVKSFSTMFIIAFQMSVPLVGSLFLVDVAL 197 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 G++ + VPQ+ I+ + P I + L +++ + H F Sbjct: 198 GIVARTVPQLNIFVVGFPVKIAAAFILLIVTMATLFIAVRHLF 240 >gi|238785153|ref|ZP_04629147.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia bercovieri ATCC 43970] gi|238713968|gb|EEQ05986.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia bercovieri ATCC 43970] Length = 264 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 104/219 (47%), Gaps = 21/219 (9%) Query: 11 SLFLIVCRVGSCIMLLP---GLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +L L + R +++LP S+ ++ L FA+A I L F + ++F A Sbjct: 10 ALGLAMMRPYGTLLILPLFTARSLGSALLRNALIFAIALPITPLFFSPSLMTHESFT--A 67 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLAETP 123 ++ L EL +G + G + + + G +I T G + T SMG+ S+ Sbjct: 68 WFG-LFCTELLIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGVL 126 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 L+ ++ L++ + V AL SY T+PIG ++ S+ + LQ+ + +M Sbjct: 127 FTQLLTVLFLIS----GGFNLVLGALYGSYDTLPIGSGIHPS---SAMLPFLQSEWQLMY 179 Query: 184 RL----SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 L + P + ++ ++S+GL+N+ Q+ ++F++ P Sbjct: 180 ELCLSFALPAMMVMVLADLSLGLINRSAQQLNVFFLAMP 218 >gi|269139499|ref|YP_003296200.1| flagellar biosynthesis pathway, component FliR [Edwardsiella tarda EIB202] gi|267985160|gb|ACY84989.1| flagellar biosynthesis pathway, component FliR [Edwardsiella tarda EIB202] gi|304559388|gb|ADM42052.1| Flagellar biosynthesis protein FliR [Edwardsiella tarda FL6-60] Length = 262 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 3/215 (1%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P L +P ++R+ A + +L P L T D+ A + L + ++ +GC GL Sbjct: 31 PMLGEKAVPRKIRIALAALTAFLLAPQLPPT-DITLASGGALW--LAIQQILIGCAIGLT 87 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 +++ ++ G VI +GL+ T S L L+ ++ LL ++ H Sbjct: 88 MQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLARLLNLLALLLFLSVNGHLWTI 147 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKL 206 L S+ T+P+ GN F + F+ + L+ P + + N+++GLLN++ Sbjct: 148 SLLADSFRTLPLSTHPLNGNGFLALAQSGNLIFLNGMMLALPLIALLLTLNMALGLLNRM 207 Query: 207 VPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 PQ+ I+ + P + +G + L + + ++ H Sbjct: 208 TPQLSIFVVGFPLTLTIGMMTLSMLMPMLAPFVEH 242 >gi|50120647|ref|YP_049814.1| flagellar biosynthesis protein FliR [Pectobacterium atrosepticum SCRI1043] gi|49611173|emb|CAG74619.1| flagellar biosynthetic protein [Pectobacterium atrosepticum SCRI1043] Length = 261 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 32/153 (20%), Positives = 69/153 (45%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ ++ +G GL +++ ++ G +I +GL T + + + I+ Sbjct: 73 LLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVIARFLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L D H + L S+ T+PI + F + F+ L L+ P + Sbjct: 133 AILLFLTFDGHLWLISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLALPIIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++G+LN++ PQ+ I+ + P + +G Sbjct: 193 LLLTINLALGMLNRMAPQLSIFVVGFPITLTVG 225 >gi|294013057|ref|YP_003546517.1| flagellar biosynthetic protein FliR [Sphingobium japonicum UT26S] gi|292676387|dbj|BAI97905.1| flagellar biosynthetic protein FliR [Sphingobium japonicum UT26S] Length = 260 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 7/233 (3%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL---QNFVNRAYYSKLVM 74 R G+ + P +P+Q+RL ++A + L +++ + + V LV Sbjct: 22 RPGAAFIAAPVFGAPAVPLQLRLILSLALGMAAL----NSVHIVLPADGVASFQGVMLVA 77 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ G G +++ G I +GLN + S A + + I+ Sbjct: 78 GEVLAGLAIGFAVQIGYAAALVAGEAIGNTMGLNFAAMVDPSSGQATQAVGQFLSILSTF 137 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 L +D H + +V+SY +P G + + + + ++ P F + Sbjct: 138 LLLAMDGHLMLVSFVVQSYQALPPGGAMLSNDAVWHLIEFGGALLGAGVTIALPVGFALV 197 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + I +G+L + P + ++ + P + G + L ++ I+ + + G Sbjct: 198 LVQIVMGMLARTAPALNLFSVGMPVALMAGLILLAVTAPIMGEGITAALKAGL 250 >gi|269103166|ref|ZP_06155863.1| flagellar biosynthesis protein FliR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163064|gb|EEZ41560.1| flagellar biosynthesis protein FliR [Photobacterium damselae subsp. damselae CIP 102761] Length = 260 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 36/202 (17%), Positives = 85/202 (42%), Gaps = 13/202 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT------IDLQNFVNRAYYSK 71 R+ S +M + ++ ++RL A+ + ++P L + L F+ Sbjct: 21 RISSMMMTMTFFGARFVSAKIRLYLALTITFAVVPVLPQVPQDIALLSLHGFI------- 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ++ +G GL+ + T G +++ L + + ++ L L + Sbjct: 74 ITTQQIVIGAAIGLVTQFITQSFVLLGQILAMQSSLGFASMVDPANGQNTPVLGQLYLFL 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 ++ + D H ++ +VKS+ T+PIG+ + G + F + L ++ + Sbjct: 134 AIILFLMTDGHLEMLELIVKSFTTLPIGKAMFNGQDYYQLALWFGHMFKMALSMALAGII 193 Query: 192 FYIVFNISIGLLNKLVPQIPIY 213 + N+S G++ + PQ+ I+ Sbjct: 194 ALLTVNLSFGVMTRAAPQLNIF 215 >gi|78044979|ref|YP_359854.1| flagellar biosynthetic protein FliR [Carboxydothermus hydrogenoformans Z-2901] gi|77997094|gb|ABB15993.1| flagellar biosynthetic protein FliR [Carboxydothermus hydrogenoformans Z-2901] Length = 255 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 40/189 (21%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 34 IPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV---MVELFLGCVHGLLIRVY 90 +P V+ F + + +LLP + + + V R ++ L+ ++ L LG V + +Y Sbjct: 30 VPPAVKGFFTLIVAYLLLPTVAGSFTATD-VQRNFFLLLIGESLIGLLLGFVTLIFANLY 88 Query: 91 TLGLQFTGSVISTAIGLNLQTSMGISDSLAETP---LNSLIGIIGLLALWVIDFHHQVFY 147 + G + GL+ T + D L +T + + I + G+L ++ + HH++ Sbjct: 89 LV----AGQYMDLTSGLSAAT---LFDPLTQTNAGLMANFIYLYGILNYFLANGHHRLLT 141 Query: 148 ALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L S+ IP G+ L + + + ++ + ++ PFL ++ ++++G+L + Sbjct: 142 FLTVSFELIPPGKGLLHPGLSELLIKIFALVMLVAIEIAIPFLMVMLISDLALGILARTA 201 Query: 208 PQIPIYFIS 216 PQ+ ++ +S Sbjct: 202 PQMNVFLLS 210 >gi|300951575|ref|ZP_07165408.1| flagellar biosynthetic protein FliR [Escherichia coli MS 116-1] gi|300956534|ref|ZP_07168816.1| flagellar biosynthetic protein FliR [Escherichia coli MS 175-1] gi|300316634|gb|EFJ66418.1| flagellar biosynthetic protein FliR [Escherichia coli MS 175-1] gi|300449202|gb|EFK12822.1| flagellar biosynthetic protein FliR [Escherichia coli MS 116-1] gi|323940391|gb|EGB36582.1| flagellar biosynthetic protein FliR [Escherichia coli E482] gi|332093093|gb|EGI98157.1| flagellar biosynthetic protein FliR [Shigella boydii 5216-82] Length = 261 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGVALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|161502897|ref|YP_001570009.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864244|gb|ABX20867.1| hypothetical protein SARI_00956 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 264 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS IP +V+L + ++V+ P L D F A + L Sbjct: 17 FWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSL-PANDTPLFSIAALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M ++ +G G ++ ++ G I +GL+ T + L L ++ ++ Sbjct: 74 AMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + H + LV ++ T+PIG N F + F+ L L+ P + Sbjct: 134 MLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALAKAGGLIFLNGLMLALPIITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLF 244 >gi|254506950|ref|ZP_05119089.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus 16] gi|219550235|gb|EED27221.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus 16] Length = 260 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 45/221 (20%), Positives = 98/221 (44%), Gaps = 20/221 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVM 74 R+ + +M++ ++P +VRL +A + ++P + I+L +F + ++ Sbjct: 21 RISAMLMVMSVTGARFVPTRVRLYLGLALTFAVMPVIPAVPKEIELLSFEGFLTLLEQIV 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + + Q G +Q+S+G + + TPL L Sbjct: 81 IGVAMGTVTQFMIQTFVILGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ ++PIG F + L F + L +S Sbjct: 131 MFLATMFFLATDGHLKMIMLVVMSFQSLPIGAGSLTTVDFRELASWLGIMFKVSLSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L LC Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLLC 230 >gi|197285501|ref|YP_002151373.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] gi|227355992|ref|ZP_03840384.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] gi|194682988|emb|CAR43426.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] gi|227163980|gb|EEI48882.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] Length = 260 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 2/156 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G + GL +++ ++ G VI +GL+ T + S L + ++ +L Sbjct: 77 QILIGTILGLSMQLAFASVRHAGEVIGLQMGLSFATFVDPSGGPNMPILARIFNMLTMLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 V D H + L ++ +PIG Q N I + V T F+ + L+ P + + Sbjct: 137 FMVFDGHLWLLSVLADTFYVVPIGNQTFNSLGILT-LVQSGGTIFINGMMLAMPLITLLL 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 V N+S+G+LN++ PQ+ ++ + P + +G L L L Sbjct: 196 VLNLSLGILNRMTPQLSVFVVGFPLTLTIGMLALSL 231 >gi|313200555|ref|YP_004039213.1| flagellar biosynthetic protein flir [Methylovorus sp. MP688] gi|312439871|gb|ADQ83977.1| flagellar biosynthetic protein FliR [Methylovorus sp. MP688] Length = 256 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 14/162 (8%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQ-----TSMGISDSLAE--TPLNSLI 128 ++ +G G +R+ ++ G +I +GL + G S+++++ L +LI Sbjct: 78 QMVIGFAIGFSMRIVFAAVEMAGQMIGMTMGLGFAMFYDPQTQGQSNAISQFMVLLTTLI 137 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L+L D H + A+++S+ P+ E G F N F L +S P Sbjct: 138 ----FLSL---DGHLLMISAVMESFANFPLSAEWQGGLDFMKMANWGGKIFSAGLLISLP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + ++ N+++G+L + PQ+ ++ I P I +G + + L Sbjct: 191 AIAALLITNMALGILTRTAPQLNLFGIGFPVTIAIGYVVVAL 232 >gi|26248219|ref|NP_754259.1| flagellar biosynthesis protein FliR [Escherichia coli CFT073] gi|110642056|ref|YP_669786.1| flagellar biosynthesis protein FliR [Escherichia coli 536] gi|191173327|ref|ZP_03034857.1| flagellar biosynthetic protein FliR [Escherichia coli F11] gi|215487150|ref|YP_002329581.1| flagellar biosynthesis protein FliR [Escherichia coli O127:H6 str. E2348/69] gi|227885621|ref|ZP_04003426.1| flagellar biosynthesis protein FliR [Escherichia coli 83972] gi|237705909|ref|ZP_04536390.1| flagellar biosynthetic protein fliR [Escherichia sp. 3_2_53FAA] gi|300975535|ref|ZP_07173046.1| flagellar biosynthetic protein FliR [Escherichia coli MS 45-1] gi|300994265|ref|ZP_07180817.1| flagellar biosynthetic protein FliR [Escherichia coli MS 200-1] gi|301050689|ref|ZP_07197550.1| flagellar biosynthetic protein FliR [Escherichia coli MS 185-1] gi|312967147|ref|ZP_07781365.1| flagellar biosynthetic protein FliR [Escherichia coli 2362-75] gi|331647544|ref|ZP_08348636.1| flagellar biosynthetic protein FliR [Escherichia coli M605] gi|26108623|gb|AAN80826.1|AE016762_79 Flagellar biosynthetic protein fliR [Escherichia coli CFT073] gi|110343648|gb|ABG69885.1| flagellar biosynthetic protein FliR [Escherichia coli 536] gi|190906444|gb|EDV66053.1| flagellar biosynthetic protein FliR [Escherichia coli F11] gi|215265222|emb|CAS09612.1| flagellar export pore protein [Escherichia coli O127:H6 str. E2348/69] gi|222033689|emb|CAP76430.1| flagellar biosynthetic protein fliR [Escherichia coli LF82] gi|226900666|gb|EEH86925.1| flagellar biosynthetic protein fliR [Escherichia sp. 3_2_53FAA] gi|227837194|gb|EEJ47660.1| flagellar biosynthesis protein FliR [Escherichia coli 83972] gi|281179012|dbj|BAI55342.1| flagellar biosynthetic protein FliR [Escherichia coli SE15] gi|300297612|gb|EFJ53997.1| flagellar biosynthetic protein FliR [Escherichia coli MS 185-1] gi|300304930|gb|EFJ59450.1| flagellar biosynthetic protein FliR [Escherichia coli MS 200-1] gi|300410304|gb|EFJ93842.1| flagellar biosynthetic protein FliR [Escherichia coli MS 45-1] gi|307553963|gb|ADN46738.1| flagellar biosynthetic protein FliR [Escherichia coli ABU 83972] gi|312288611|gb|EFR16513.1| flagellar biosynthetic protein FliR [Escherichia coli 2362-75] gi|312946543|gb|ADR27370.1| flagellar biosynthesis protein FliR [Escherichia coli O83:H1 str. NRG 857C] gi|315286654|gb|EFU46087.1| flagellar biosynthetic protein FliR [Escherichia coli MS 110-3] gi|315290267|gb|EFU49645.1| flagellar biosynthetic protein FliR [Escherichia coli MS 153-1] gi|315296484|gb|EFU55781.1| flagellar biosynthetic protein FliR [Escherichia coli MS 16-3] gi|323186706|gb|EFZ72028.1| flagellar biosynthetic protein FliR [Escherichia coli RN587/1] gi|323956346|gb|EGB52089.1| flagellar biosynthetic protein FliR [Escherichia coli H263] gi|324005851|gb|EGB75070.1| flagellar biosynthetic protein FliR [Escherichia coli MS 57-2] gi|324013505|gb|EGB82724.1| flagellar biosynthetic protein FliR [Escherichia coli MS 60-1] gi|330911756|gb|EGH40266.1| flagellar biosynthesis protein FliR [Escherichia coli AA86] gi|331043268|gb|EGI15406.1| flagellar biosynthetic protein FliR [Escherichia coli M605] Length = 261 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|331677832|ref|ZP_08378507.1| flagellar biosynthetic protein FliR [Escherichia coli H591] gi|331074292|gb|EGI45612.1| flagellar biosynthetic protein FliR [Escherichia coli H591] Length = 261 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLTLISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|238787479|ref|ZP_04631277.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia frederiksenii ATCC 33641] gi|238724266|gb|EEQ15908.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia frederiksenii ATCC 33641] Length = 257 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 18/208 (8%) Query: 40 LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGS 99 L FA+A + L F ++ LQ+ + ++ L+ +EL +G + G + + + G Sbjct: 32 LVFAIALPVTPL-FFSASLLLQDSLTSWFW--LLCMELLIGVMIGFVAALPFWAIDMAGF 88 Query: 100 VISTAIGLNLQT----SMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155 +I T G + T SMG+ S+ L+ ++ L++ + V AL SY Sbjct: 89 LIDTLRGATMSTLFNPSMGMESSIFGVLFTQLLTVLFLIS----GGFNLVLAALYGSYSI 144 Query: 156 IPIGQELNFGNIFSSFVNMLQTTFMIM----LRLSSPFLFFYIVFNISIGLLNKLVPQIP 211 +P G + + F LQ+ + +M L + P L ++ ++S+GL+N+ Q+ Sbjct: 145 LPAGSGIQPSPVMLQF---LQSEWQLMYELCLNFALPALLVMVLADLSLGLVNRSSQQLN 201 Query: 212 IYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++F++ P L L +S+ ++ + Sbjct: 202 VFFLAMPIKSALALFLLVISLPYALHHY 229 >gi|157156975|ref|YP_001463252.1| flagellar biosynthesis protein FliR [Escherichia coli E24377A] gi|218695555|ref|YP_002403222.1| flagellar biosynthesis protein FliR [Escherichia coli 55989] gi|256022392|ref|ZP_05436257.1| flagellar biosynthesis protein FliR [Escherichia sp. 4_1_40B] gi|301029407|ref|ZP_07192501.1| flagellar biosynthetic protein FliR [Escherichia coli MS 196-1] gi|307138617|ref|ZP_07497973.1| flagellar biosynthesis protein FliR [Escherichia coli H736] gi|309795943|ref|ZP_07690356.1| flagellar biosynthetic protein FliR [Escherichia coli MS 145-7] gi|331642571|ref|ZP_08343706.1| flagellar biosynthetic protein FliR [Escherichia coli H736] gi|331668641|ref|ZP_08369489.1| flagellar biosynthetic protein FliR [Escherichia coli TA271] gi|331683502|ref|ZP_08384103.1| flagellar biosynthetic protein FliR [Escherichia coli H299] gi|157079005|gb|ABV18713.1| flagellar biosynthetic protein FliR [Escherichia coli E24377A] gi|218352287|emb|CAU98044.1| flagellar export pore protein [Escherichia coli 55989] gi|299877711|gb|EFI85922.1| flagellar biosynthetic protein FliR [Escherichia coli MS 196-1] gi|308120393|gb|EFO57655.1| flagellar biosynthetic protein FliR [Escherichia coli MS 145-7] gi|324018859|gb|EGB88078.1| flagellar biosynthetic protein FliR [Escherichia coli MS 117-3] gi|331039369|gb|EGI11589.1| flagellar biosynthetic protein FliR [Escherichia coli H736] gi|331063835|gb|EGI35746.1| flagellar biosynthetic protein FliR [Escherichia coli TA271] gi|331079717|gb|EGI50914.1| flagellar biosynthetic protein FliR [Escherichia coli H299] Length = 261 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|194434960|ref|ZP_03067203.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 1012] gi|194416795|gb|EDX32921.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 1012] Length = 260 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 16 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 73 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 133 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 192 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 193 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 224 >gi|157161421|ref|YP_001458739.1| flagellar biosynthesis protein FliR [Escherichia coli HS] gi|157067101|gb|ABV06356.1| flagellar biosynthetic protein FliR [Escherichia coli HS] Length = 261 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|293410306|ref|ZP_06653882.1| flagellar biosynthetic protein FliR [Escherichia coli B354] gi|331663446|ref|ZP_08364356.1| flagellar biosynthetic protein FliR [Escherichia coli TA143] gi|291470774|gb|EFF13258.1| flagellar biosynthetic protein FliR [Escherichia coli B354] gi|331059245|gb|EGI31222.1| flagellar biosynthetic protein FliR [Escherichia coli TA143] Length = 261 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|119947197|ref|YP_944877.1| flagellar biosynthetic protein FliR [Psychromonas ingrahamii 37] gi|119865801|gb|ABM05278.1| flagellar biosynthetic protein FliR [Psychromonas ingrahamii 37] Length = 259 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 29/247 (11%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ M P +PM+VRL A+ ++++ P + + F +A L + +L Sbjct: 21 RISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQPAIDPFSLQAII--LSVTQL 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL-IGIIGLLAL 136 G G L +++ G IS MG++ ++ P N + + IIG L L Sbjct: 79 LWGLFFGFLFQIFFTIFTTIGQTIS--------VQMGLAMAVMNDPANGVSVAIIGRLFL 130 Query: 137 W-------VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + D H + +V+S+ PI Q + G++ + ++M+ F ++ P Sbjct: 131 FACTLLFLAFDGHLAILALMVESFTIWPIKQGFSLGSL-ALIISMMVWMFASAFAIAIPA 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS------IEIIVY--QF 239 + ++ N S G +NK P + ++ + P L+GL +L + S EI++ +F Sbjct: 190 IAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIYFEILMQAIKF 249 Query: 240 SHSFLYG 246 + S++ G Sbjct: 250 ARSYMIG 256 >gi|83646010|ref|YP_434445.1| type III secretory pathway subunit EscT [Hahella chejuensis KCTC 2396] gi|83634053|gb|ABC30020.1| Type III secretory pathway, component EscT [Hahella chejuensis KCTC 2396] Length = 261 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 51/238 (21%), Positives = 104/238 (43%), Gaps = 16/238 (6%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 F+ R+ + M+LP LS + +R A +FS++ P + +D Q ++ + Sbjct: 14 FMSSARMLAMFMMLPFLSKQSLGGAMIRNGVAASFSLITYPLVEHGLDAQT-LDGLHLLL 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ E+ +G G ++ + ++ G I G + +++ +PL GI+ Sbjct: 73 IIVKEVGIGLAMGFVLVMPFWAIESVGFFIDNQRGATMASALNPLSGSQTSPL----GIL 128 Query: 132 GLLALWVIDFHHQVF----YALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIML 183 +L + F F YAL KSY P+ + L G F F+ L T + + Sbjct: 129 LTQSLVTLFFISGTFLLMLYALYKSYSVWPVFEFLPSFPVSGPAF--FLAQLDTMMRLTV 186 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L +P + + + L+++ PQ+ ++ ++ P +G LC+ ++ FS Sbjct: 187 LLGAPVVIVMFLTEFGLALISRFAPQLNVFILAMPLKSAVGLALLCVYAGFVIRYFSE 244 >gi|15802385|ref|NP_288411.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 EDL933] gi|15831943|ref|NP_310716.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. Sakai] gi|168751879|ref|ZP_02776901.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4113] gi|168758264|ref|ZP_02783271.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4401] gi|168764424|ref|ZP_02789431.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4501] gi|168771557|ref|ZP_02796564.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4486] gi|168777377|ref|ZP_02802384.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4196] gi|168783347|ref|ZP_02808354.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4076] gi|168790290|ref|ZP_02815297.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC869] gi|168802297|ref|ZP_02827304.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC508] gi|195939256|ref|ZP_03084638.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. EC4024] gi|208810191|ref|ZP_03252067.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4206] gi|208816620|ref|ZP_03257740.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4045] gi|208820873|ref|ZP_03261193.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4042] gi|209399396|ref|YP_002271067.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4115] gi|217328658|ref|ZP_03444739.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. TW14588] gi|254793600|ref|YP_003078437.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. TW14359] gi|260868543|ref|YP_003234945.1| flagellar export pore protein FliR [Escherichia coli O111:H- str. 11128] gi|261227555|ref|ZP_05941836.1| flagellar export pore protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254621|ref|ZP_05947154.1| flagellar export pore protein FliR [Escherichia coli O157:H7 str. FRIK966] gi|291283127|ref|YP_003499945.1| Flagellar biosynthetic protein FliR [Escherichia coli O55:H7 str. CB9615] gi|331653362|ref|ZP_08354367.1| flagellar biosynthetic protein FliR [Escherichia coli M718] gi|12516057|gb|AAG56965.1|AE005417_7 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933] gi|13362157|dbj|BAB36112.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. Sakai] gi|187767391|gb|EDU31235.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4196] gi|188014181|gb|EDU52303.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4113] gi|188999260|gb|EDU68246.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4076] gi|189354885|gb|EDU73304.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4401] gi|189359734|gb|EDU78153.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4486] gi|189365568|gb|EDU83984.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4501] gi|189370195|gb|EDU88611.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC869] gi|189375691|gb|EDU94107.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC508] gi|208724707|gb|EDZ74414.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4206] gi|208730963|gb|EDZ79652.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4045] gi|208740996|gb|EDZ88678.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4042] gi|209160796|gb|ACI38229.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4115] gi|209766768|gb|ACI81696.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|209766770|gb|ACI81697.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|209766772|gb|ACI81698.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|209766774|gb|ACI81699.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|209766776|gb|ACI81700.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|217318005|gb|EEC26432.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. TW14588] gi|254593000|gb|ACT72361.1| flagellar export pore protein [Escherichia coli O157:H7 str. TW14359] gi|257764899|dbj|BAI36394.1| flagellar export pore protein FliR [Escherichia coli O111:H- str. 11128] gi|290763000|gb|ADD56961.1| Flagellar biosynthetic protein FliR [Escherichia coli O55:H7 str. CB9615] gi|320191924|gb|EFW66571.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. EC1212] gi|320641798|gb|EFX11186.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. G5101] gi|320647157|gb|EFX15990.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H- str. 493-89] gi|320652441|gb|EFX20739.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H- str. H 2687] gi|320658043|gb|EFX25805.1| flagellar biosynthesis protein FliR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658615|gb|EFX26309.1| flagellar biosynthesis protein FliR [Escherichia coli O55:H7 str. USDA 5905] gi|323174670|gb|EFZ60290.1| flagellar biosynthetic protein FliR [Escherichia coli LT-68] gi|323180797|gb|EFZ66337.1| flagellar biosynthetic protein FliR [Escherichia coli 1180] gi|326342361|gb|EGD66142.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. 1044] gi|326344865|gb|EGD68612.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. 1125] gi|331049460|gb|EGI21532.1| flagellar biosynthetic protein FliR [Escherichia coli M718] Length = 261 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|320182733|gb|EFW57617.1| Flagellar biosynthesis protein FliR [Shigella boydii ATCC 9905] Length = 261 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|293415260|ref|ZP_06657903.1| flagellar biosynthetic protein FliR [Escherichia coli B185] gi|291432908|gb|EFF05887.1| flagellar biosynthetic protein FliR [Escherichia coli B185] Length = 261 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|238793340|ref|ZP_04636966.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia intermedia ATCC 29909] gi|238727309|gb|EEQ18837.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia intermedia ATCC 29909] Length = 264 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 15/152 (9%) Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLAETPLNSLIGI 130 VEL +G + G + + + G +I T G + T SMG+ S+ ++ + Sbjct: 74 VELLIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGVLFTQILTV 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL----S 186 + LL+ + V AL SY +P+G + S+ ++ LQ+ +++M L + Sbjct: 134 LFLLS----GGFNLVLAALYGSYDILPVGSGIRPS---SAMLHFLQSEWLLMQELCLSFA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + ++ ++S+GL+N+ Q+ ++F++ P Sbjct: 187 LPAMLVMVLADLSLGLINRSAQQLNVFFLAMP 218 >gi|332095510|gb|EGJ00526.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 155-74] Length = 261 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|16129897|ref|NP_416460.1| flagellar export pore protein [Escherichia coli str. K-12 substr. MG1655] gi|89108782|ref|AP_002562.1| flagellar export pore protein [Escherichia coli str. K-12 substr. W3110] gi|170081594|ref|YP_001730914.1| flagellar export pore protein [Escherichia coli str. K-12 substr. DH10B] gi|238901155|ref|YP_002926951.1| flagellar export pore protein [Escherichia coli BW2952] gi|253773101|ref|YP_003035932.1| flagellar biosynthesis protein FliR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|2506425|sp|P33135|FLIR_ECOLI RecName: Full=Flagellar biosynthetic protein fliR gi|1736616|dbj|BAA15775.1| flagellar export pore protein [Escherichia coli str. K12 substr. W3110] gi|1788261|gb|AAC75017.1| flagellar export pore protein [Escherichia coli str. K-12 substr. MG1655] gi|169889429|gb|ACB03136.1| flagellar export pore protein [Escherichia coli str. K-12 substr. DH10B] gi|238861104|gb|ACR63102.1| flagellar export pore protein [Escherichia coli BW2952] gi|253324145|gb|ACT28747.1| flagellar biosynthetic protein FliR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448937|gb|ACX39359.1| flagellar biosynthetic protein FliR [Escherichia coli DH1] gi|315136587|dbj|BAJ43746.1| flagellar biosynthesis protein FliR [Escherichia coli DH1] Length = 261 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|218554530|ref|YP_002387443.1| flagellar biosynthesis protein FliR [Escherichia coli IAI1] gi|218689945|ref|YP_002398157.1| flagellar biosynthesis protein FliR [Escherichia coli ED1a] gi|301018200|ref|ZP_07182715.1| flagellar biosynthetic protein FliR [Escherichia coli MS 69-1] gi|301644591|ref|ZP_07244580.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1] gi|218361298|emb|CAQ98882.1| flagellar export pore protein [Escherichia coli IAI1] gi|218427509|emb|CAR08404.2| flagellar export pore protein [Escherichia coli ED1a] gi|300399787|gb|EFJ83325.1| flagellar biosynthetic protein FliR [Escherichia coli MS 69-1] gi|301077066|gb|EFK91872.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1] Length = 261 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|195953032|ref|YP_002121322.1| type III secretion system inner membrane R protein [Hydrogenobaculum sp. Y04AAS1] gi|195932644|gb|ACG57344.1| type III secretion system inner membrane R protein [Hydrogenobaculum sp. Y04AAS1] Length = 258 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 28/230 (12%) Query: 1 MTISPEI-IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID 59 MT+S I +++ LI R+ S + L P +P ++ F +AFS+ L + ++ + Sbjct: 1 MTLSISIPYLITFLLITLRISSIVFLAP--IFGDLPNSFKIFFVIAFSVSL--YYYNPVK 56 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + + + + E LG + L++R G +S+++GL+ Sbjct: 57 PVYTDSFIILTLMALKEFSLGFIISLILRFLVDIFFVFGEFVSSSLGLS----------- 105 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYA----------LVKSYGTIPIGQELNFGNIFS 169 T LN L+G +L + F +F A L +S +IP+G + N+ Sbjct: 106 NATILNPLMGNSTILGTYFSYFFMGLFAASSGFEYIYFILSESLKSIPLGV-FDLYNMRP 164 Query: 170 SFV-NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F+ N+ +F +L+ P + +V NI + +N+L+PQI ++ + P Sbjct: 165 EFILNIFYKSFYTAFQLALPMIAIGLVMNIILAAINRLIPQINVFMVGMP 214 >gi|91211168|ref|YP_541154.1| flagellar biosynthesis protein FliR [Escherichia coli UTI89] gi|117624090|ref|YP_853003.1| flagellar biosynthesis protein FliR [Escherichia coli APEC O1] gi|170679575|ref|YP_001743295.1| flagellar biosynthesis protein FliR [Escherichia coli SMS-3-5] gi|191168278|ref|ZP_03030071.1| flagellar biosynthetic protein FliR [Escherichia coli B7A] gi|193066372|ref|ZP_03047420.1| flagellar biosynthetic protein FliR [Escherichia coli E22] gi|194439589|ref|ZP_03071662.1| flagellar biosynthetic protein FliR [Escherichia coli 101-1] gi|209919372|ref|YP_002293456.1| flagellar biosynthesis protein FliR [Escherichia coli SE11] gi|218558807|ref|YP_002391720.1| flagellar biosynthesis protein FliR [Escherichia coli S88] gi|218705443|ref|YP_002412962.1| flagellar biosynthesis protein FliR [Escherichia coli UMN026] gi|260844349|ref|YP_003222127.1| flagellar export pore protein FliR [Escherichia coli O103:H2 str. 12009] gi|293405433|ref|ZP_06649425.1| flagellar biosynthetic protein fliR [Escherichia coli FVEC1412] gi|298381077|ref|ZP_06990676.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302] gi|300899207|ref|ZP_07117483.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1] gi|300923887|ref|ZP_07139902.1| flagellar biosynthetic protein FliR [Escherichia coli MS 182-1] gi|300931163|ref|ZP_07146510.1| flagellar biosynthetic protein FliR [Escherichia coli MS 187-1] gi|301327737|ref|ZP_07220942.1| flagellar biosynthetic protein FliR [Escherichia coli MS 78-1] gi|307312464|ref|ZP_07592098.1| flagellar biosynthetic protein FliR [Escherichia coli W] gi|331673463|ref|ZP_08374231.1| flagellar biosynthetic protein FliR [Escherichia coli TA280] gi|91072742|gb|ABE07623.1| flagellar biosynthetic protein FliR [Escherichia coli UTI89] gi|115513214|gb|ABJ01289.1| flagellar biosynthetic protein FliR [Escherichia coli APEC O1] gi|170517293|gb|ACB15471.1| flagellar biosynthetic protein FliR [Escherichia coli SMS-3-5] gi|190901650|gb|EDV61406.1| flagellar biosynthetic protein FliR [Escherichia coli B7A] gi|192925957|gb|EDV80603.1| flagellar biosynthetic protein FliR [Escherichia coli E22] gi|194421498|gb|EDX37512.1| flagellar biosynthetic protein FliR [Escherichia coli 101-1] gi|209912631|dbj|BAG77705.1| flagellar biosynthetic protein FliR [Escherichia coli SE11] gi|218365576|emb|CAR03303.1| flagellar export pore protein [Escherichia coli S88] gi|218432540|emb|CAR13433.1| flagellar export pore protein [Escherichia coli UMN026] gi|257759496|dbj|BAI30993.1| flagellar export pore protein FliR [Escherichia coli O103:H2 str. 12009] gi|284921858|emb|CBG34933.1| flagellar biosynthesis protein FliR [Escherichia coli 042] gi|291427641|gb|EFF00668.1| flagellar biosynthetic protein fliR [Escherichia coli FVEC1412] gi|294491448|gb|ADE90204.1| flagellar biosynthetic protein FliR [Escherichia coli IHE3034] gi|298278519|gb|EFI20033.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302] gi|300357188|gb|EFJ73058.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1] gi|300419850|gb|EFK03161.1| flagellar biosynthetic protein FliR [Escherichia coli MS 182-1] gi|300461020|gb|EFK24513.1| flagellar biosynthetic protein FliR [Escherichia coli MS 187-1] gi|300845737|gb|EFK73497.1| flagellar biosynthetic protein FliR [Escherichia coli MS 78-1] gi|306907635|gb|EFN38138.1| flagellar biosynthetic protein FliR [Escherichia coli W] gi|307626574|gb|ADN70878.1| flagellar biosynthesis protein FliR [Escherichia coli UM146] gi|315061250|gb|ADT75577.1| flagellar export pore protein [Escherichia coli W] gi|320194337|gb|EFW68968.1| Flagellar biosynthesis protein FliR [Escherichia coli WV_060327] gi|320198641|gb|EFW73241.1| Flagellar biosynthesis protein FliR [Escherichia coli EC4100B] gi|323183934|gb|EFZ69321.1| flagellar biosynthetic protein FliR [Escherichia coli 1357] gi|323378173|gb|ADX50441.1| flagellar biosynthetic protein FliR [Escherichia coli KO11] gi|323948346|gb|EGB44333.1| flagellar biosynthetic protein FliR [Escherichia coli H120] gi|323952443|gb|EGB48316.1| flagellar biosynthetic protein FliR [Escherichia coli H252] gi|323961994|gb|EGB57593.1| flagellar biosynthetic protein FliR [Escherichia coli H489] gi|323972750|gb|EGB67950.1| flagellar biosynthetic protein FliR [Escherichia coli TA007] gi|324118999|gb|EGC12888.1| flagellar biosynthetic protein FliR [Escherichia coli E1167] gi|331069661|gb|EGI41048.1| flagellar biosynthetic protein FliR [Escherichia coli TA280] gi|332343676|gb|AEE57010.1| flagellar biosynthetic protein FliR [Escherichia coli UMNK88] Length = 261 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|300818630|ref|ZP_07098838.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1] gi|300528802|gb|EFK49864.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1] Length = 261 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|323977869|gb|EGB72955.1| flagellar biosynthetic protein FliR [Escherichia coli TW10509] Length = 261 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|182412231|ref|YP_001817297.1| type III secretion system inner membrane R protein [Opitutus terrae PB90-1] gi|177839445|gb|ACB73697.1| type III secretion system inner membrane R protein [Opitutus terrae PB90-1] Length = 249 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 27/141 (19%), Positives = 70/141 (49%), Gaps = 1/141 (0%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ +G G ++R+ ++ G ++S+ IG+ + MG+ + E P+ +LI ++ Sbjct: 70 EILVGLALGFMVRLAFAAVEMAGRILSSEIGITMGGGMGVPEPATE-PMTALISTFAVVL 128 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + H + L +S+ P GQ + + +N + +R+++PF+ + Sbjct: 129 FFAFGGHLMMLSGLARSFVLAPAGQPMLAPSASDLLINATSHLIEVGVRIAAPFIAMNFL 188 Query: 196 FNISIGLLNKLVPQIPIYFIS 216 ++ +L +++P++ ++ +S Sbjct: 189 VLLTFSVLGRVLPKMNVFIVS 209 >gi|1648938|gb|AAB17686.1| putative [Sinorhizobium fredii] gi|19749330|gb|AAL98700.1| Y4yN [Sinorhizobium fredii] Length = 272 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 12/204 (5%) Query: 23 IMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKLVMVELFLGC 81 +++LP + S I +R C A+AF + L + D + L + L + E+F+G Sbjct: 33 MLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQALDPETSLIQIPLLGLKEVFVGV 92 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + G + + GLQ G I G+ + T + S + + +GI + Sbjct: 93 LLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATSSQASAMGVFLGITAITIFVAAG 152 Query: 141 FHHQVFYALVKSYGTIPIGQ------ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 V AL SY P+ + +F ++++TT ++ S P +FF Sbjct: 153 GVEAVLSALYGSYSIWPVYRFQPSLSTQGAVELFGLLDHIMRTTLLV----SGPVVFFLG 208 Query: 195 VFNISIGLLNKLVPQIPIYFISTP 218 + +IS+ +L + PQ +S P Sbjct: 209 LIDISMMMLRRFAPQFKSGQLSPP 232 >gi|126443144|ref|YP_001061220.1| flagellar biosynthesis pathway, component FliR [Burkholderia pseudomallei 668] gi|167725904|ref|ZP_02409140.1| Flagellar biosynthesis pathway, component FliR [Burkholderia pseudomallei DM98] gi|254182915|ref|ZP_04889508.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1655] gi|126222635|gb|ABN86140.1| flagellar biosynthesis pathway, component FliR [Burkholderia pseudomallei 668] gi|184213449|gb|EDU10492.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1655] Length = 258 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 39/200 (19%), Positives = 87/200 (43%), Gaps = 10/200 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+ + + P + S +P ++R+ A+ +++ LP + D + + F R + + Sbjct: 20 CRILAALSAAPFIGESTVPARMRVTIALFLALIALPAV-DPVAIPVFSARGALAA--AEQ 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG---IIGL 133 + +G + G+L G ++++ +GL + ++D L + + G + + Sbjct: 77 ILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAV---MNDPLNGATSDVVSGFMLVASI 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L + ID H V L S+ P+G ++ ++ F L++P +F Sbjct: 134 LLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSL-KPLAYQAAWLFSTTTLLAAPLVFAT 192 Query: 194 IVFNISIGLLNKLVPQIPIY 213 +V I L++ P I ++ Sbjct: 193 VVLQIGKSYLSRATPSINLF 212 >gi|332187892|ref|ZP_08389625.1| flagellar biosynthetic protein FliR [Sphingomonas sp. S17] gi|332012053|gb|EGI54125.1| flagellar biosynthetic protein FliR [Sphingomonas sp. S17] Length = 257 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 47/234 (20%), Positives = 103/234 (44%), Gaps = 10/234 (4%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 ++I P+ + LFL++ R+G+ + P IP+ VR+ A A + FL +++ Sbjct: 6 LSIEPQAWAI-LFLMI-RIGAAFITAPVFGAVSIPLPVRVSLAGAIA-----FLVNSVHP 58 Query: 61 QNFVNRAYYSKLVM---VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117 + +M E +G GL+++V +I ++G+N ++ + Sbjct: 59 VVPPPVIFSLPTIMSVAAEAIVGLALGLILQVAFTAPLVASELIGGSMGINFAATIDPLN 118 Query: 118 SLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177 + L ++ L +D H + +VKSY +P G+ F + Sbjct: 119 GRSTQALGQFFTVMLTLLFLSVDGHLVLVDMIVKSYDALPPGRAWMAPAQFRAIALFGGY 178 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 F+ L L+ P F + N+ +G++++ P + ++ + P +G+G + + ++ Sbjct: 179 AFLAGLLLALPVGFLLLCLNLVVGMMSRAAPSLNLFSVGLPAALGVGVIAIAVA 232 >gi|167905063|ref|ZP_02492268.1| Flagellar biosynthesis pathway, component FliR [Burkholderia pseudomallei NCTC 13177] Length = 258 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 39/200 (19%), Positives = 87/200 (43%), Gaps = 10/200 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+ + + P + S +P ++R+ A+ +++ LP + D + + F R + + Sbjct: 20 CRILAALSAAPFIGESTVPARMRVTIALFLALIALPAV-DPVAIPVFSARGALAA--AEQ 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG---IIGL 133 + +G + G+L G ++++ +GL + ++D L + + G + + Sbjct: 77 ILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAV---MNDPLNGATSDVVSGFMLVASI 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L + ID H V L S+ P+G ++ ++ F L++P +F Sbjct: 134 LLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSL-KPLAYQAAWLFSTTTLLAAPLVFAT 192 Query: 194 IVFNISIGLLNKLVPQIPIY 213 +V I L++ P I ++ Sbjct: 193 VVLQIGKSYLSRATPSINLF 212 >gi|254299710|ref|ZP_04967159.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 406e] gi|157809532|gb|EDO86702.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 406e] Length = 258 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 39/200 (19%), Positives = 87/200 (43%), Gaps = 10/200 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+ + + P + S +P ++R+ A+ +++ LP + D + + F R + + Sbjct: 20 CRILAALSAAPFIGESTVPARMRVTIALFLALIALPAV-DPVAIPVFSARGALAA--AEQ 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG---IIGL 133 + +G + G+L G ++++ +GL + ++D L + + G + + Sbjct: 77 ILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAV---MNDPLNGATSDVVSGFMLVASI 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L + ID H V L S+ P+G ++ ++ F L++P +F Sbjct: 134 LLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSL-KPLAYQAAWLFSTTALLAAPLVFAT 192 Query: 194 IVFNISIGLLNKLVPQIPIY 213 +V I L++ P I ++ Sbjct: 193 VVLQIGKSYLSRATPSINLF 212 >gi|320668513|gb|EFX35340.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. LSU-61] Length = 261 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTFG 225 >gi|312884593|ref|ZP_07744297.1| type III secretion protein SpaR/YscT/HrcT [Vibrio caribbenthicus ATCC BAA-2122] gi|309367905|gb|EFP95453.1| type III secretion protein SpaR/YscT/HrcT [Vibrio caribbenthicus ATCC BAA-2122] Length = 260 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 9/148 (6%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS----MGISDSLAETPLNSLIGII 131 E+ +G + G + + G VI T G ++ T MG+ S+ ++ ++ Sbjct: 76 EVIIGLIVGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSVFGMFFTQILSVL 135 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 L V + + AL SY TIP L+F N SF+ + Q + L + P + Sbjct: 136 FL----VTGGFNALLSALYLSYSTIPPDSVLSFNNNLLSFISDQWQMMSDMCLSFALPAM 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTP 218 I+ + ++GL+N+ V Q+ ++F+S P Sbjct: 192 VVMIMVDAALGLVNRSVEQLNVFFLSMP 219 >gi|167750710|ref|ZP_02422837.1| hypothetical protein EUBSIR_01688 [Eubacterium siraeum DSM 15702] gi|167656389|gb|EDS00519.1| hypothetical protein EUBSIR_01688 [Eubacterium siraeum DSM 15702] gi|291532048|emb|CBK97633.1| Flagellar biosynthesis pathway, component FliR [Eubacterium siraeum 70/3] Length = 262 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 8/219 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL- 72 LI+CRV P S S P+++R +A +++ + + + + L Sbjct: 19 LIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGNI----KYEPTGIFMMLF 74 Query: 73 -VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +M EL LG + G ++ + G +I GL++ +M + ++ ++ + Sbjct: 75 DMMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVSMPLFANVYYYM 134 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L ++ + H SY T+PIG ++ + V T + ++L++P + Sbjct: 135 FILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLTLAVKLAAPIIA 194 Query: 192 FYIVFNISIGLLNKLVPQIPIYF--ISTPYLIGLGSLFL 228 + I +G+L K VP I I+ I LIGL ++ + Sbjct: 195 IEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLI 233 >gi|291617860|ref|YP_003520602.1| FliR [Pantoea ananatis LMG 20103] gi|291152890|gb|ADD77474.1| FliR [Pantoea ananatis LMG 20103] Length = 261 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 47/233 (20%), Positives = 104/233 (44%), Gaps = 7/233 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + + P LS + +V++ A + +L+P L +++ F + L Sbjct: 17 FWPLVRILALLATAPVLSEKAVSKRVKIGLAAMITWILIPNL-PPVNVTLFSPAGFM--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ ++ +G G ++ ++ G +I +GL+ T + L L + ++ Sbjct: 74 LIQQMLIGIAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPASRLNMPVLARFLDMLA 133 Query: 133 LLALWVIDFHHQ--VFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 +L ++ DF ++ V + + + + G F + Q F+ + L+ P + Sbjct: 134 ML--FIFDFQRSPVAYFPAVGQFSYVAYRRRASSGKCLYGFGEIRQHDFLNGMMLALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+ +GLLN+L PQ+ I+ I P + +G L + L + ++ H F Sbjct: 192 VLLLTINMVLGLLNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLF 244 >gi|149184190|ref|ZP_01862508.1| flagellar biosynthetic protein FliR [Erythrobacter sp. SD-21] gi|148831510|gb|EDL49943.1| flagellar biosynthetic protein FliR [Erythrobacter sp. SD-21] Length = 261 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 15/242 (6%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E M + ++ R+G+ ++ P + +PM VR+ A +I + ++ + + ++ Sbjct: 12 EQDMWRVVFLMTRIGAALLAAPFFGATSVPMAVRVSITGALAIFVATWMPEVQTPEAILS 71 Query: 66 RAYYSKLVMV--ELFLGCVHGLLIRVYTLGLQFTGSVISTA-IGLNLQTSMGISDSLAET 122 L+ + E+ +G G + L L F I+ IG + SM +S Sbjct: 72 ---LEGLLAIAGEVVIGLALG-----FVLQLAFAAPTIAAELIGGGMGMSMAVSQDAMGG 123 Query: 123 PLNSLIG---IIGLLALWVIDFHHQVFYALV-KSYGTIPIGQELNFGNIFSSFVNMLQTT 178 + G +I L +++ H + ALV +SY P GQ F++ Sbjct: 124 GTTTSFGQYFVIVLTLIFLSTGAHLHWVALVAESYSAFPPGQTWLGAERFAAIAGFASFM 183 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 F +R++ P ++ + G+L++ P + ++ + P + G L +S +I Q Sbjct: 184 FETAIRIALPVTLILLLVQVITGILSRSAPSLNLFALGLPAGVLAGMAALIISAPLIYDQ 243 Query: 239 FS 240 F+ Sbjct: 244 FA 245 >gi|304311651|ref|YP_003811249.1| Type III secretory pathway protein [gamma proteobacterium HdN1] gi|301797384|emb|CBL45604.1| Type III secretory pathway protein [gamma proteobacterium HdN1] Length = 263 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 13/223 (5%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ ++LP S +P VR +A +I +LP + + + + +V+ E Sbjct: 23 RLGAAFLILPLFQQSTVPATVRNSLIVALAISVLPAAISSTKAADLM-LLDWPIIVLKEC 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG-IIGLLAL 136 +G V G L L GS+I G ++ + I D + + +LIG + A Sbjct: 82 LIGAVIGFLFGSVFWALGVAGSMIDMQSGGSMAS---IVDPI-QGHQTALIGQLFSRFAS 137 Query: 137 WVIDFHHQ--VFYALV-KSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLF 191 W++ VF LV SY PI L +I SS F+ L L+ P + Sbjct: 138 WLLMASGGFLVFMELVLSSYRIWPIADALPQLSIESSDLFIAEFGYILKTGLILAGPAIV 197 Query: 192 FYIVFNISIGLLNKLVPQIPIYFIST--PYLIGLGSLFLCLSI 232 + + GL+N+ + ++ IS+ Y G+G FL L++ Sbjct: 198 VLMAIDAGFGLMNRFAQNLNLFSISSSVKYFAGIGVTFLVLTL 240 >gi|167630309|ref|YP_001680808.1| flagellar biosynthetic protein flir [Heliobacterium modesticaldum Ice1] gi|167593049|gb|ABZ84797.1| flagellar biosynthetic protein flir [Heliobacterium modesticaldum Ice1] Length = 266 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 10/186 (5%) Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL--AETPLNS 126 Y +V EL LG G ++++ + G +I +G + + I D L A+ P+ Sbjct: 72 YVIVVAQELLLGLAIGFILQLLFAAILTAGHLIDIQLGFGI---VNIIDPLWGAQVPMTG 128 Query: 127 L-IGIIGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNF---GNIFSSFVNMLQTTFMI 181 + + I+ LL + D H + L S+ +P G + G+I V ++ +I Sbjct: 129 VFLQILALLIFVIFDGHLLLIQVLADSFRILPAAGSPFSLALAGSISDFIVRLVSGVLLI 188 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++L+ P + ++ +I++GL+++ VPQ+ ++ I P I +G FL +++ + + Sbjct: 189 GVQLAMPIIGIILINDIALGLVSRTVPQMNLFVIGIPLKIIVGVAFLWITLPFYIDGLNR 248 Query: 242 SFLYGF 247 F F Sbjct: 249 LFTLSF 254 >gi|300940405|ref|ZP_07154990.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1] gi|306814227|ref|ZP_07448393.1| flagellar biosynthesis protein FliR [Escherichia coli NC101] gi|331657996|ref|ZP_08358958.1| flagellar biosynthetic protein FliR [Escherichia coli TA206] gi|300454799|gb|EFK18292.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1] gi|305852386|gb|EFM52837.1| flagellar biosynthesis protein FliR [Escherichia coli NC101] gi|331056244|gb|EGI28253.1| flagellar biosynthetic protein FliR [Escherichia coli TA206] Length = 261 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|302338095|ref|YP_003803301.1| flagellar biosynthetic protein FliR [Spirochaeta smaragdinae DSM 11293] gi|301635280|gb|ADK80707.1| flagellar biosynthetic protein FliR [Spirochaeta smaragdinae DSM 11293] Length = 266 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 54/247 (21%), Positives = 110/247 (44%), Gaps = 21/247 (8%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT------IDLQNFVN 65 L L+ R+ + + + P +S S +P VR A+ SI++ P++ ++ LQ Sbjct: 13 LLLLFARIFAMLAVAPVMSSSAVPGIVRAVLALLSSIIIYPWVAESGYPIPEAALQ---- 68 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA--ETP 123 Y+ L++ E+ +G V G ++ V G S +G + D LA E P Sbjct: 69 ---YAMLLLGEVLIGVVIGFMMTVVFTVFLVAGQFFSFQMGFGASE---VYDPLAQVEIP 122 Query: 124 L-NSLIGIIGLLALWVIDFHHQVF-YALVKSYGTIPIGQELNFGNIFSSF-VNMLQTTFM 180 L + ++ +L + D ++F Y ++ S+ ++ L F++ V + F Sbjct: 123 LMGQFLNLVAMLVFLINDGLRKLFLYGVLGSFQSLRAWDLLERRQQFATLAVRSMVDLFR 182 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + +S P L ++ ++++GLL K PQ+ + + P I + + +++ ++ F Sbjct: 183 QAMIISFPILGTMLLVSVALGLLAKAAPQMNLLMLGFPLKIAIAFFMMFVTMPFLMEAFG 242 Query: 241 HSFLYGF 247 GF Sbjct: 243 KMIDAGF 249 >gi|260855925|ref|YP_003229816.1| flagellar export pore protein FliR [Escherichia coli O26:H11 str. 11368] gi|257754574|dbj|BAI26076.1| flagellar export pore protein FliR [Escherichia coli O26:H11 str. 11368] gi|323152719|gb|EFZ38991.1| flagellar biosynthetic protein FliR [Escherichia coli EPECa14] Length = 261 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + L ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P ++ +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLILTVG 225 >gi|227112529|ref|ZP_03826185.1| flagellar biosynthesis protein FliR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 261 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 69/153 (45%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ ++ +G GL +++ ++ G +I +GL T + + + I+ Sbjct: 73 LLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARFLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L D H + L S+ T+PI + F + F+ L L+ P + Sbjct: 133 AILLFLTFDGHLWMISLLADSFYTLPISANPINSHAFLALARAGGLIFINGLMLALPIIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++G+LN++ PQ+ ++ + P + +G Sbjct: 193 LLLTINLALGMLNRVAPQLSVFVVGFPITLTVG 225 >gi|152997435|ref|YP_001342270.1| flagellar biosynthetic protein FliR [Marinomonas sp. MWYL1] gi|150838359|gb|ABR72335.1| flagellar biosynthetic protein FliR [Marinomonas sp. MWYL1] Length = 260 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 14/206 (6%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF--VNRAYYSKLVMV 75 R+G+ M LP + +VR+ F+ +I++ P ID+ N+ ++ AY L+ Sbjct: 22 RIGAFFMALPLFGSRLVSPRVRIAFSFLVAIIITP----VIDVPNYDPISPAYIV-LIAE 76 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 +L +G V G ++ + G + + GL S ++ ++ L + LA Sbjct: 77 QLVIGFVLGFVVTILFQLFSLAGQLAAMKAGLGFAMSNDPANGISVATLGQYYLSMVALA 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV---NMLQTTFMIMLRLSSPFLFF 192 + H + L +S+ PIG + + + M + +I+L L+ L Sbjct: 137 FLGTNGHLVMIEYLAESFNYWPIGSGFDSQRYWQLVLLGGWMFEKALLIVLPLAVAVL-- 194 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP 218 V N+S G++ K PQ+ ++ + P Sbjct: 195 --VINLSFGVVAKASPQLNVFALGFP 218 >gi|323968366|gb|EGB63773.1| flagellar biosynthetic protein FliR [Escherichia coli M863] gi|327253082|gb|EGE64736.1| flagellar biosynthetic protein FliR [Escherichia coli STEC_7v] Length = 261 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|238752377|ref|ZP_04613855.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia rohdei ATCC 43380] gi|238709418|gb|EEQ01658.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia rohdei ATCC 43380] Length = 267 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLAETPLNSLIGI 130 +EL +G + G + + + G +I T G + T SMG+ S+ L+ + Sbjct: 74 MELLIGVMIGFVAAIPFWAIDMAGFMIDTLRGATMSTLFNPSMGMESSIFGVLFTQLLTV 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 + L++ + V AL SY +P G + + F+ N Q + + L + P Sbjct: 134 LFLIS----GGFNLVLSALYSSYDILPAGTIIQPSSAMLQFLQNEWQLMYELCLSFALPA 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 L ++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ + Sbjct: 190 LLVMVLADLSLGLINRSSQQLNVFFLAMPIKSALALFLLVISLPYALHHY 239 >gi|319790411|ref|YP_004152044.1| flagellar biosynthetic protein FliR [Thermovibrio ammonificans HB-1] gi|317114913|gb|ADU97403.1| flagellar biosynthetic protein FliR [Thermovibrio ammonificans HB-1] Length = 259 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 148 ALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 ALV+S+ IP G G +F F +++ PFL + N+++ L+N+L+ Sbjct: 147 ALVESFKLIPPGGASFKGPLFKFLFQEAGLIFSFGFQMAFPFLLVLFITNLALALVNRLI 206 Query: 208 PQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 PQI ++ + P + +G + L + ++V Sbjct: 207 PQINVFIVGLPLQLFVGLVALSVGFSVVV 235 >gi|332533114|ref|ZP_08408983.1| flagellar biosynthetic protein FliR [Pseudoalteromonas haloplanktis ANT/505] gi|332037396|gb|EGI73850.1| flagellar biosynthetic protein FliR [Pseudoalteromonas haloplanktis ANT/505] Length = 259 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 14/237 (5%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L + R+ S IM++ GL +P +++ M S+V+ + + F N + ++ Sbjct: 17 LPLVRISSMIMIMAGLGAKNVPTRIK----MGLSVVVTFLVVPVLPPATFTNLFSFEMIL 72 Query: 74 MV--ELFLGCVHG----LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V ++ +G G LL+ + L G +++ GL + + S+ + + Sbjct: 73 VVIQQMLIGVAIGFASILLLNTFVLA----GQILAMQTGLGFASVIDPSNGASVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L + + H + +V S+ +PI + + V F L LS Sbjct: 129 FLILATLLFFAFNGHLMMIQMVVHSFQVLPIDGTWWSVDHYWDIVTWGGWMFTTALVLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L +V NIS G++ + PQ+ I+ I P+ + G + ++ QF +L Sbjct: 189 APLTAMLVINISFGIMTRAAPQLNIFAIGFPFTLVAGLTIIWATLGNFTLQFEFQWL 245 >gi|227328346|ref|ZP_03832370.1| flagellar biosynthesis protein FliR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 261 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 69/153 (45%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ ++ +G GL +++ ++ G +I +GL T + + + I+ Sbjct: 73 LLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARFLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L D H + L S+ T+PI + F + F+ L L+ P + Sbjct: 133 AILLFLTFDGHLWMISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLALPIIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++G+LN++ PQ+ ++ + P + +G Sbjct: 193 LLLTINLALGMLNRVAPQLSVFVVGFPITLTVG 225 >gi|289523554|ref|ZP_06440408.1| flagellar biosynthetic protein FliR [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503246|gb|EFD24410.1| flagellar biosynthetic protein FliR [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 259 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 19/219 (8%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH--- 83 P + P+ V+ FA+ ++ L P L + + + + L++V L C+ Sbjct: 29 PSFAPPSYPVPVKFMFALVLALALSPLL----EYPQGLFQGSFIALILVGLREFCIGLGI 84 Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV---ID 140 G + Q G +G + + I D +ET ++ L + +LALW + Sbjct: 85 GFFASLPLYAFQLAGGFSGINMGFGM---VNILDPFSETQISLLGQLKFMLALWFYFKWN 141 Query: 141 FHHQVFYALVKSYGTIPIG---QELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 H +F LV S+ +P G + G+I + L F + +++S PFL ++ + Sbjct: 142 GHILLFRCLVHSFKLLPFGIWGWSWSNGSITGEW---LVELFYLAIKISLPFLGAMLLAD 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 I +G + + VPQ+ ++ + I LG L L + ++V Sbjct: 199 IGLGFVARTVPQMNVFVLGFSIKILLGMLVLMFMVPLLV 237 >gi|300920169|ref|ZP_07136619.1| flagellar biosynthetic protein FliR [Escherichia coli MS 115-1] gi|300412826|gb|EFJ96136.1| flagellar biosynthetic protein FliR [Escherichia coli MS 115-1] Length = 261 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + +V ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLMVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|284007637|emb|CBA73292.1| type III secretion inner membrane protein YscT,HrcT,SpaR,EscT,EpaR1 [Arsenophonus nasoniae] Length = 256 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 15/151 (9%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS----MGISDSLAETPLNSLIGII 131 EL +G V G + + G +I T G ++ T MG+ S+ ++ ++ Sbjct: 72 ELLIGLVLGFCAAIPFWAIDMAGFIIDTLRGASMSTILNPLMGLQSSIFGMLFTQILSVL 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL----SS 187 L++ + + AL SY +P L+F +S + +Q + +ML L + Sbjct: 132 FLVS----GGFNALLTALYHSYNVLPPNAPLSFN---ASLLLFIQQQWHMMLELCMSFAM 184 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + I+ ++++GL+N+ V Q+ ++F+S P Sbjct: 185 PAMVVMILVDVALGLINRSVEQLNVFFLSMP 215 >gi|260767958|ref|ZP_05876892.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] gi|260615988|gb|EEX41173.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] Length = 258 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+G+ + +P IP+ VR A++ +++ P + +DL + + + + Sbjct: 21 RIGAVFVSMPFFGDLLIPVWVRSLLALSITVITAPLMPAMPAVDLMSMTSLFLAFEQAVW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 L G + +L V+TL G ++S +GL + + L+ L + + L Sbjct: 81 GLMFGLILHMLFTVFTL----LGQIVSLQMGLGMAMMNDPVNGLSVAILGRIFLVFTTLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H V L++S+ P+G + ++ V++ F L L+ P + ++ Sbjct: 137 FLALEGHLVVIDVLIQSFTVWPVGSGITMLSL-QGIVHIFSWMFSAALALALPAIVSMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 NIS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 196 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|167589636|ref|ZP_02382024.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ubonensis Bu] Length = 269 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 134 LALWVIDFHHQVFYAL-VKSYGTIPIGQ-ELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 +AL+V QV L +SY PIG +F ++ +FV T F M++L++P + Sbjct: 137 IALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFAWMVKLAAPVV 196 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + IGL+ + VPQ+ I+ + P L L + L + +VY H+ L Sbjct: 197 IVLVLVELGIGLVGRSVPQLNIFVFAQPVKSALALLMMVLFLP-VVYAALHALL 249 >gi|167005766|ref|ZP_02271524.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 81-176] Length = 205 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 2/173 (1%) Query: 53 FLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS 112 +L+ L++ +++ ++ E+ G + GL++++ + G I+ +G + + Sbjct: 2 YLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASI 61 Query: 113 MGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV 172 + S + + ++ ++ L+ D HH + L S G I +G N+ ++ Sbjct: 62 LDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMH-YL 120 Query: 173 NM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 NM + F+I +S P L ++ ++ GLL K +PQ + I P I LG Sbjct: 121 NMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALG 173 >gi|227876758|ref|ZP_03994867.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC 35243] gi|306817705|ref|ZP_07451447.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC 35239] gi|227842655|gb|EEJ52855.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC 35243] gi|304649519|gb|EFM46802.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC 35239] Length = 252 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 27/153 (17%), Positives = 62/153 (40%) Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ F+G L++R+ +Q GS++ G + + + + + + Sbjct: 72 IQAFIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTNQATFGRVYELTAMA 131 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 L+ + + + L +S+ +P G + N V M L ++ P L Sbjct: 132 LLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTMSALEIAGPLLLVLF 191 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLF 227 + ++ +GLL K+ P + + + P I + + F Sbjct: 192 LTDMGMGLLTKVAPAMNAFTLGFPLKIMVTAFF 224 >gi|312602775|ref|YP_004022620.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica HKI 454] gi|306431578|emb|CBK52130.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica HKI 454] gi|312170089|emb|CBW77101.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica HKI 454] Length = 270 Score = 38.1 bits (87), Expect = 1.00, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 118 SLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQ 176 S TP +L+ I +A W + + L SY P+ NI SFV Sbjct: 126 SEQNTPTGTLLMQIATVAFWTLGGMPALLGVLYDSYNWWPLTSRTPVAENILQSFVLHQT 185 Query: 177 TTFMIM-LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 T M M +L++P +F ++ +++ G + K ++ + +S P L L L L + I Sbjct: 186 DTLMQMTAKLATPIMFILLLVDLAFGFVAKSAQKLEVMQLSQPVKGALTVLILALFVGIF 245 Query: 236 VYQ 238 V Q Sbjct: 246 VEQ 248 >gi|91776318|ref|YP_546074.1| flagellar biosynthetic protein FliR [Methylobacillus flagellatus KT] gi|91710305|gb|ABE50233.1| flagellar biosynthetic protein FliR [Methylobacillus flagellatus KT] Length = 266 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 41/216 (18%), Positives = 90/216 (41%), Gaps = 2/216 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 ++ + +L + R+ + I + P + +P V+L + ++ ++P + D + F Sbjct: 10 QVWVATLMWPLTRILAFIAVAPLFNHRALPNNVKLGLGLVLTVAVMPSIPDIPPVSVFSM 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ ++ +G G +R+ ++ G +GL T + Sbjct: 70 NGLL--ILCQQVIIGAAMGFSLRIIFSAVELAGHTAGMTMGLGFAMFYDPQTQGQSTSIG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ +L ID H V L +S+ + P+ E NFG F L + Sbjct: 128 QFLVVLSMLLFLSIDGHLVVISTLAESFSSFPVTAEPNFGLDPYKIALWGGKIFSAGLLM 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 S P + ++ N+++G+L + PQ+ ++ I P I Sbjct: 188 SLPIIAALLLANLALGVLTRAAPQLNLFGIGFPITI 223 >gi|34556637|ref|NP_906452.1| flagellar biosynthesis protein FliR [Wolinella succinogenes DSM 1740] gi|34482351|emb|CAE09352.1| FLAGELLAR BIOSYNTHETIC PROTEIN FLIR [Wolinella succinogenes] Length = 255 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 78/169 (46%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 EL LG + +++++ + F G V S A+GL + ++ + + LI ++ LL Sbjct: 76 ELMLGFLASVVLQIVFGMISFGGEVTSFAMGLTMASAYDPVTGAQKPIIGQLITLLALLV 135 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + +D HH F + +S IP+G + +I S + F+I ++ P + ++ Sbjct: 136 MLALDLHHPFFLFIAESLRHIPLGGFVFSPDIASYTLKAFANLFLIGFTMAFPIVALILL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +I G++ K PQ + I P I + L + + I+ F F+ Sbjct: 196 SDIIFGMIGKAHPQFNLLVIGFPVKIAIAFAVLIVILPAILIHFKREFI 244 >gi|333004055|gb|EGK23589.1| flagellar biosynthetic protein FliR [Shigella flexneri K-272] gi|333017828|gb|EGK37135.1| flagellar biosynthetic protein FliR [Shigella flexneri K-227] Length = 261 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|304414278|ref|ZP_07395646.1| type III secretion system apparatus protein [Candidatus Regiella insecticola LSR1] gi|304283492|gb|EFL91888.1| type III secretion system apparatus protein [Candidatus Regiella insecticola LSR1] Length = 275 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 143 HQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIG 201 +Q+ L SY +P GQ + + F +F+ + + F + L + P L ++ ++++G Sbjct: 149 NQLLLVLYGSYKILPTGQGITLSDAFFTFIRVQWKLMFELCLTFALPALLVMLLTDLALG 208 Query: 202 LLNKLVPQIPIYFISTP 218 L+N+ Q+ ++F++ P Sbjct: 209 LINRSAQQLNVFFLAMP 225 >gi|269976285|ref|ZP_06183281.1| flagellar biosynthetic protein FliR [Mobiluncus mulieris 28-1] gi|307701592|ref|ZP_07638609.1| putative flagellar biosynthetic protein FliR [Mobiluncus mulieris FB024-16] gi|269935614|gb|EEZ92152.1| flagellar biosynthetic protein FliR [Mobiluncus mulieris 28-1] gi|307613271|gb|EFN92523.1| putative flagellar biosynthetic protein FliR [Mobiluncus mulieris FB024-16] Length = 249 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/153 (17%), Positives = 62/153 (40%) Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ F+G L++R+ +Q GS++ G + + + + + + Sbjct: 69 IQAFIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTNQATFGRVYELTAMA 128 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 L+ + + + L +S+ +P G + N V M L ++ P L Sbjct: 129 LLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTMSALEIAGPLLLVLF 188 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLF 227 + ++ +GLL K+ P + + + P I + + F Sbjct: 189 LTDMGMGLLTKVAPAMNAFTLGFPLKIMVTAFF 221 >gi|307131601|ref|YP_003883617.1| flagellar biosynthesis protein fliR [Dickeya dadantii 3937] gi|306529130|gb|ADM99060.1| Flagellar biosynthesis protein fliR [Dickeya dadantii 3937] Length = 260 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 3/206 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P S I +V++ + +IV+ P + T + F + + Sbjct: 17 FWPLVRILALISTAPIFSERSITRRVKIGLGVLITIVITPSIPHT-SIPVFSAAGIW--M 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G + G +++ ++ G +I +GL+ T S + L+ ++ Sbjct: 74 LFQQVLIGVMLGFAMQLAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVIARLMNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL ++ H + LV S+ TIPI E GN+F + F L L+ P + Sbjct: 134 LLLFLSMNGHLWLISLLVDSFHTIPISAEPISGNVFMTLAEAGGRIFSNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP 218 + N+++GLL++L PQ+ I+ I P Sbjct: 194 LLTINMALGLLSRLAPQLTIFAIGFP 219 >gi|145297439|ref|YP_001140280.1| lateral flagellar biosynthetic protein LfiR [Aeromonas salmonicida subsp. salmonicida A449] gi|142850211|gb|ABO88532.1| lateral flagellar biosynthetic protein LfiR [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA---YYSKLVM 74 R+ + ++P IP QVRL FA S+++ P L + + F A +L+ Sbjct: 25 RIATAFWVMPVFGDGRIPPQVRLLFAFIISLLIAPMLKEMPVVDPFSTGALVLTVEQLLF 84 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 LF CV +L + T+ G ++S +GL + S+ + ++ L+ I L Sbjct: 85 GLLFGLCVQ-MLFMIMTMA----GQILSMQMGLAMAVMNDPSNGDSAPIVSQLMLIFCSL 139 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 ++ H LV+S + P G L+ ++ + + L L+ P + + Sbjct: 140 LFLGLNGHLVTLDVLVQSLRSWPPGSSLDLLDM-KGVIGLFGWCIGAALILTLPAVVAML 198 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + N++ G++N+ P + I+ + P + LG + + +SI + ++ Sbjct: 199 MVNLTFGVMNRTAPSLNIFSLGFPMTLLLGLVTMAISISGVPARY 243 >gi|16520046|ref|NP_444166.1| innermembrane protein RhcT; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2494573|sp|P55722|Y4YN_RHISN RecName: Full=Probable translocation protein y4yN gi|2182739|gb|AAB91953.1| innermembrane protein RhcT; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 272 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 10/203 (4%) Query: 23 IMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV-MVELFLGC 81 +++LP + S I +R C A+AF + L + D + + L+ + E+F+G Sbjct: 33 MLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQAPDPETSLIQIPLLGLKEVFVGV 92 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI-IGLLALWVID 140 + G + + GLQ G I G+ TS A S +G+ +G+ A+ + Sbjct: 93 LLGTFLGIPLWGLQAAGEFIDNQRGI---TSPSTQADPATNSQASAMGVFLGITAITIFV 149 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSS-----FVNMLQTTFMIMLRLSSPFLFFYIV 195 V L YG+ I F S+ +L L +S P +FF + Sbjct: 150 AAGGVEAVLSALYGSYSIWPVYRFQPTLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGL 209 Query: 196 FNISIGLLNKLVPQIPIYFISTP 218 +IS+ +L + PQ +S P Sbjct: 210 IDISMMMLRRFAPQFKSGQLSPP 232 >gi|260752856|ref|YP_003225749.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552219|gb|ACV75165.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 265 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/203 (21%), Positives = 83/203 (40%), Gaps = 5/203 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R G+ + P L + P+ VR+ A+A V LP + + ++ L +V Sbjct: 22 RPGAAFVAAPLLGANAFPVTVRVMLALA---VGLPSVMHAHLILPDSGLVSFTGLFLVVG 78 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G G +++ T +I A+GL + + + L + I+G Sbjct: 79 EIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLTQIFTILGAFF 138 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 D H + +V+SY T+P+G +F F I + ++ P F I+ Sbjct: 139 FLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLIALPVTFSIIL 198 Query: 196 FNISIGLLNKLVPQIPIYFISTP 218 + +G L++ P + ++ + P Sbjct: 199 IQVMMGFLSRTAPALNLFAVGMP 221 >gi|238788322|ref|ZP_04632116.1| Flagellar biosynthetic protein fliR [Yersinia frederiksenii ATCC 33641] gi|238723568|gb|EEQ15214.1| Flagellar biosynthetic protein fliR [Yersinia frederiksenii ATCC 33641] Length = 260 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 4/236 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS I +V++ A+ + ++ P L +++ A + + Sbjct: 17 FWPLVRVLALITTAPVLSEKQINRKVKVGLAVLITFLIAPSL-PPVNIPLVSAGAVW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G GL ++ ++ G VI +GL+ T S L L+ ++ Sbjct: 74 AAQQVLIGVAIGLTMQFAFAAVRLAGEVIGLQMGLSFATFFDPSGGPNMPVLARLLNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L D H + L S+ T+PI E GN F + FM L L+ P + Sbjct: 134 MLLFLAFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + N+++G+LN++ PQ+ ++ I P + +G + L L I ++ FS FF Sbjct: 194 LLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGL-IMPLLAPFSEHLFGEFF 248 >gi|30063388|ref|NP_837559.1| flagellar biosynthesis protein FliR [Shigella flexneri 2a str. 2457T] gi|56480008|ref|NP_707835.2| flagellar biosynthesis protein FliR [Shigella flexneri 2a str. 301] gi|110805919|ref|YP_689439.1| flagellar biosynthesis protein FliR [Shigella flexneri 5 str. 8401] gi|30041640|gb|AAP17368.1| flagellar biosynthetic protein FliR [Shigella flexneri 2a str. 2457T] gi|56383559|gb|AAN43542.2| flagellar biosynthetic protein FliR [Shigella flexneri 2a str. 301] gi|110615467|gb|ABF04134.1| flagellar biosynthetic protein FliR [Shigella flexneri 5 str. 8401] gi|281601389|gb|ADA74373.1| Flagellar biosynthetic protein FliR [Shigella flexneri 2002017] gi|313650172|gb|EFS14585.1| flagellar biosynthetic protein FliR [Shigella flexneri 2a str. 2457T] gi|332756106|gb|EGJ86459.1| flagellar biosynthetic protein FliR [Shigella flexneri 4343-70] gi|332757213|gb|EGJ87550.1| flagellar biosynthetic protein FliR [Shigella flexneri 2747-71] gi|332766688|gb|EGJ96892.1| flagellar biosynthetic protein FliR [Shigella flexneri 2930-71] gi|333003308|gb|EGK22854.1| flagellar biosynthetic protein FliR [Shigella flexneri K-218] gi|333017636|gb|EGK36948.1| flagellar biosynthetic protein FliR [Shigella flexneri K-304] Length = 261 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|260767694|ref|ZP_05876629.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] gi|260617203|gb|EEX42387.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] Length = 260 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 20/222 (9%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYYSKL--V 73 R+ + +M++ ++ ++RL +A + ++P + DL+ + + L + Sbjct: 20 ARISAMLMVMTVTGARFVSTRIRLYLGLAITFAVMPAIPAVPSDLELLSFNGFLTTLNQI 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSL 127 ++ + +G V +I+ + + Q G +Q+S+G + + TPL L Sbjct: 80 IIGVAMGMVTQFMIQTFVMLGQILG----------MQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L V D H ++ + +V S+ ++PIG F L T F + L +S Sbjct: 130 FMFLATLFFLVSDGHLKMIHLVVLSFKSLPIGTHSLTAVDFRELALWLGTMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L LC Sbjct: 190 SGIVALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVG-LLLC 230 >gi|103488401|ref|YP_617962.1| flagellar biosynthetic protein FliR [Sphingopyxis alaskensis RB2256] gi|98978478|gb|ABF54629.1| flagellar biosynthetic protein FliR [Sphingopyxis alaskensis RB2256] Length = 259 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/201 (17%), Positives = 81/201 (40%), Gaps = 1/201 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R G+ + P + +P+Q+RL A+A + + + + V+ ++ E+ Sbjct: 22 RPGAAFIAAPVFGAANVPVQLRLVIALAVGVPAVAASGMVLPAEGIVSVPGI-FFIVGEV 80 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++++ G VIS A+GL + + + + + + ++ Sbjct: 81 VIGLAIGFVLQMGLAAALLAGEVISNAMGLGFASMVDPLSGASSSAIGQFLAMLATALFL 140 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 D H + +V SY +P G + + F L ++ P F I+ Sbjct: 141 AADGHLLLIDIVVDSYTALPPGNAFPSWDALGGVIRFGSLMFAAALTIALPVGFVLILVQ 200 Query: 198 ISIGLLNKLVPQIPIYFISTP 218 I +G++ + P + ++ + P Sbjct: 201 IIMGVIGRSAPALNLFAVGIP 221 >gi|238794005|ref|ZP_04637623.1| Flagellar biosynthetic protein fliR [Yersinia intermedia ATCC 29909] gi|238726637|gb|EEQ18173.1| Flagellar biosynthetic protein fliR [Yersinia intermedia ATCC 29909] Length = 260 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS I +V++ A+ + ++ P L +++ A + + Sbjct: 17 FWPLIRVLALITTAPVLSEKQINRKVKVGLALLITFLIAPSL-PPVNIPLVSTGAVW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G GL ++ ++ G VI +GL+ T S L L+ ++ Sbjct: 74 AAQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLARLLNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL D H + L S+ T+PI E GN F + FM L L+ P + Sbjct: 134 LLLFLTFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++G+LN++ PQ+ ++ I P + +G Sbjct: 194 LLTLNMALGMLNRMTPQLSVFVIGFPLTLTVG 225 >gi|149188097|ref|ZP_01866392.1| flagellar biosynthesis protein R [Vibrio shilonii AK1] gi|148838085|gb|EDL55027.1| flagellar biosynthesis protein R [Vibrio shilonii AK1] Length = 260 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 48/237 (20%), Positives = 104/237 (43%), Gaps = 22/237 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLP---FLWDTIDLQNFVNRAYYSKLVM 74 R+ + +M++ +++ ++RL +A ++ ++P + TI+L +F ++ ++ Sbjct: 21 RISAMLMVMSVTGANFVSPRIRLFLGLALTLAVMPSIPAVPQTIELFSFQGFLTVAEQIL 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + +G +I+ + + Q G +Q+S+G + + TPL L Sbjct: 81 IGTAMGMTTVFMIQTFVMLGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ T+PIG F L F L ++ Sbjct: 131 MFLATMFFLATDGHLKMIQLVVMSFKTLPIGSGHLSSADFREMAGWLSIMFQTALSMALA 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + N+S G++ + PQ+ I+ + + + +G L +C I +Y SH LY Sbjct: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLIG-LMICWYIMAGLY--SHYQLY 244 >gi|170019717|ref|YP_001724671.1| flagellar biosynthesis protein FliR [Escherichia coli ATCC 8739] gi|169754645|gb|ACA77344.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739] Length = 261 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLVLTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|91223557|ref|ZP_01258822.1| flagellar biosynthesis protein R [Vibrio alginolyticus 12G01] gi|91191643|gb|EAS77907.1| flagellar biosynthesis protein R [Vibrio alginolyticus 12G01] Length = 260 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 20/221 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVM 74 R+ S +M++ ++ ++RL +A + ++P + I+L +F ++ ++ Sbjct: 21 RISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIELLSFRGFMTIAEQII 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + L Q G +Q+S+G + + TPL L Sbjct: 81 IGIAMGMVTQFMIQTFVLLGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 131 MFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMAGWLGIMFQTALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L LC Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLLC 230 >gi|300904840|ref|ZP_07122666.1| flagellar biosynthetic protein FliR [Escherichia coli MS 84-1] gi|301304255|ref|ZP_07210370.1| flagellar biosynthetic protein FliR [Escherichia coli MS 124-1] gi|300403267|gb|EFJ86805.1| flagellar biosynthetic protein FliR [Escherichia coli MS 84-1] gi|300840512|gb|EFK68272.1| flagellar biosynthetic protein FliR [Escherichia coli MS 124-1] gi|315257218|gb|EFU37186.1| flagellar biosynthetic protein FliR [Escherichia coli MS 85-1] Length = 261 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + L ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|120597287|ref|YP_961861.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1] gi|120557380|gb|ABM23307.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1] Length = 232 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 7/220 (3%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT--IDLQNFVNRAYYSKLVMVELFLGC 81 M++P L +Y+P+ VR+ A++ + +L P L +D + + + +++ L Sbjct: 1 MIMPLLGNAYVPVMVRIFLALSIAALLAPMLPPVPPVDAISLASLFLAIEQLLIGFMLAL 60 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDF 141 LLI V T+ G+++S +GL + ++ + ++ I G L ++ Sbjct: 61 FLTLLIHVMTM----LGNIMSMQMGLAMAVMNDPANGDSSPIISEWFQIFGTLIFLALNG 116 Query: 142 HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201 H +V S+ PIG + F V+ L F L L+ P + ++ NI+ G Sbjct: 117 HLVAINIIVDSFRLWPIGHGI-FELPLMGLVSRLAWLFAASLMLAIPAVLAMLMVNITFG 175 Query: 202 LLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +L++ P + I+ + P + +G L + LS+ I ++S Sbjct: 176 VLSRSAPSLNIFSLGFPMTMLMGLLCVFLSLSGIPSRYSD 215 >gi|315179474|gb|ADT86388.1| flagellar biosynthesis protein [Vibrio furnissii NCTC 11218] Length = 260 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 20/222 (9%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNRAYYSKL--V 73 R+ + +M++ ++ ++RL +A + ++P + DL+ + + L + Sbjct: 20 ARISAMLMVMTVTGARFVSTRIRLYLGLAITFAVMPAIPAVPPDLELLSFNGFLTTLNQI 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSL 127 ++ + +G V +I+ + + Q G +Q+S+G + + TPL L Sbjct: 80 IIGVAMGMVTQFMIQTFVMLGQILG----------MQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L V D H ++ + +V S+ ++PIG F L T F + L +S Sbjct: 130 FMFLATLFFLVSDGHLKMIHLVVLSFKSLPIGTHSLTAVDFRELALWLGTMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L LC Sbjct: 190 SGIVALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVG-LLLC 230 >gi|315126007|ref|YP_004068010.1| flagellar biosynthetic protein FliR [Pseudoalteromonas sp. SM9913] gi|315014521|gb|ADT67859.1| putative flagellar biosynthetic protein FliR [Pseudoalteromonas sp. SM9913] Length = 259 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/166 (21%), Positives = 76/166 (45%), Gaps = 1/166 (0%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ G + GL +R+ + G ++S +GL++ M L L I+ L Sbjct: 81 QIIFGVMMGLSLRILFEVMAMIGLILSMQMGLSMALVMDPGSGNQVALLGQLFWIMCALL 140 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + +D H +V+S+ + PIG+ + +I S + + F L LS P + ++ Sbjct: 141 FFAVDGHLITLQVMVESFHSFPIGRSIYEFDI-QSIIMLFAWMFSSALLLSLPGIVAMLL 199 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 N++ G+ ++ P + I+ + P + +G + +++E FS Sbjct: 200 VNLTFGVASRAAPSLNIFVLGFPMSLLMGFFCVFMTLEYTGSAFSR 245 >gi|262273549|ref|ZP_06051363.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886] gi|262222527|gb|EEY73838.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886] Length = 256 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 25/212 (11%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ + ++P IP+QVR+ + + P + +++ +A + L E+ Sbjct: 22 RIGAFLTMMPIFGGMNIPVQVRIGLTWLIAAIAAPLMPPMPEVEPLSLQA--ALLSAKEI 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL-IGIIG---- 132 +G I + L L F SV T +G L T MG+ ++ P+N + I IG Sbjct: 80 LIGG-----IMAFVLELLF--SVFMT-LGQILSTQMGLGMAMMNDPVNGVSIASIGKFYQ 131 Query: 133 ---LLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLS 186 +L +D H +V S+ +G+ ++ +F F M+ L LS Sbjct: 132 LFAILLFLALDGHLIALEVIVTSFDIWQVGETMSQMALKTVFMQFSWMIGAA----LLLS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 P + ++ NI+ G++N+ PQ+ ++ + P Sbjct: 188 LPAMIAMLLVNIAFGVMNRAAPQLNVFALGFP 219 >gi|323388138|gb|ADX60334.1| type III secretion protein RscT [Pseudomonas fluorescens] Length = 263 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 15/216 (6%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SL + + R+ C L+P +I R M +++ P + + +++ + S Sbjct: 10 SLLVAMARIYPCAFLVPAFCFQHIRGMPRHIIVMVMALIPAPGIHAVLAAKDY-SALMIS 68 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG- 129 LV+ E LG + G+L+ + + G+++ G + S TP+ L Sbjct: 69 GLVLKEAALGFLLGILLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGHLFKQ 128 Query: 130 -----IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIM 182 +I +L L V+ QV + SY P L N FS F+ +L TF M Sbjct: 129 LVIYLLIAVLGLSVLT---QVIW---DSYLIWPPTAWLPLPAVNGFSVFIGLLGDTFTHM 182 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 + ++PF+ + LL PQ+ + ++TP Sbjct: 183 MLYAAPFIAVLLFLEFGFALLGLYSPQLQVSTLATP 218 >gi|167623391|ref|YP_001673685.1| flagellar biosynthesis protein FliR [Shewanella halifaxensis HAW-EB4] gi|167353413|gb|ABZ76026.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis HAW-EB4] Length = 265 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 32/241 (13%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYSKL 72 + R+ S M++ + P +VRL ++A ++ + LP + TIDL + ++ Sbjct: 19 LTRISSMFMVMAVFGATTTPTRVRLLLSVAVTVAVAPVLPAM-PTIDLFSLSAAFVTAQQ 77 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-----SLAETPLNSL 127 +++ + +G LL++ + L TG +I +QTS+G + S +TP+ Sbjct: 78 IIIGVAMGFATLLLMQTFVL----TGQII------GMQTSLGFASMVDPSSGQQTPV--- 124 Query: 128 IGIIGLLALWVI----DFHHQVFYALVKSYGTIPI---GQELNFGNIFSSFVNMLQTTFM 180 IG LL VI D H + ++ S+ +IP+ G L +F+ FV + F Sbjct: 125 IGNFFLLLTTVIFLAVDGHLLLIKMVIASFDSIPVSMQGLSLVSYRLFTEFVGYM---FG 181 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L +S + + N+S G++ + PQ+ I+ I P + G L L++ I+ F Sbjct: 182 AALTMSLSAIVALLTINLSFGVMTRASPQLNIFSIGFPVTMIAGLFILWLTLSPIMTHFD 241 Query: 241 H 241 Sbjct: 242 E 242 >gi|260779325|ref|ZP_05888217.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC BAA-450] gi|260605489|gb|EEX31784.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC BAA-450] Length = 258 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 21/224 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ + +P S IP+ VR A++ ++ P + ++ F + + L + Sbjct: 21 RIGAVFISMPFFGDSLIPVWVRSLLALSIVMISAPLMPPMPAVEFFSMTSLF--LAFEQA 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL-IGIIGLLAL 136 G GL++ + FT I T +G + MG+ ++ P+N + + I+G + L Sbjct: 79 IWGLFFGLILHML-----FT---IFTTLGQIVSMQMGLGMAMMNDPVNGMSVAILGRIFL 130 Query: 137 -------WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ H + L++S+ P+G L ++ VN+ F L L+ P Sbjct: 131 IFCTLLFLSLEGHLVMLDVLIQSFVVWPVGSGLTSASL-QGIVNLFSWMFASALALALPA 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 + ++ NIS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 190 IVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|82470756|gb|ABB77408.1| HrcT [Pantoea stewartii subsp. stewartii] Length = 265 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 11/230 (4%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L L R+ C++L+P S + + VR +A +IV L + LQ Sbjct: 13 LFALALSAARLYPCLILVPVFSFNILKGIVRSGVVLALAIVPTLGLQAQLALQ-MPGWPQ 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTA----IGLNLQTSMGISDSLAETPL 124 L++ E +G + GL+I + Q G++ IG L ++G SD TPL Sbjct: 72 LIALILKEGVIGILLGLVISMPFWLFQSVGALFDNQRGALIGGQLNPALG-SDV---TPL 127 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIM 182 L+ +L L + V + SY P+ Q L F N F ++ +L TF + Sbjct: 128 GLLLQQTLILFLILTTGLSGVTQIIWDSYSVWPVMQWLPFPNHNGFEQYLALLTDTFSHI 187 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 + + P + ++ + SI +L+ PQ+ + +S P LG LF L I Sbjct: 188 IIYAGPLVALLLMMDFSIAILSLYSPQLQAFVLSVPAKCLLGLLFFVLYI 237 >gi|328474452|gb|EGF45257.1| flagellar biosynthesis protein FliR [Vibrio parahaemolyticus 10329] Length = 260 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 22/237 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL---WDTIDLQNFVNRAYYSKLVM 74 R+ S +M++ ++ ++RL +A + ++P + I L +F ++ ++ Sbjct: 21 RISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAISQDIQLLSFRGFMTIAEQMI 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + L Q G +Q+S+G + + TPL L Sbjct: 81 IGVAMGMVTQFMIQTFVLLGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 131 MFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDMAGWLGIMFKTALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + N+S G++ + PQ+ I+ + + + +G L +C I +Y SH LY Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLICWYILAGLY--SHYELY 244 >gi|298528401|ref|ZP_07015805.1| flagellar biosynthetic protein FliR [Desulfonatronospira thiodismutans ASO3-1] gi|298512053|gb|EFI35955.1| flagellar biosynthetic protein FliR [Desulfonatronospira thiodismutans ASO3-1] Length = 262 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 6/232 (2%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 +PE + S +L RV + LLP +P+ ++ + S+ L P L + D Q F Sbjct: 7 NPETVF-SFWLTFFRVSLVVFLLPFFGGEAMPVPIKAALCIVLSLALWPHL--SFDAQYF 63 Query: 64 VNR-AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 A + ++M EL LG + GL++ +Q G +I+ +G + + L E+ Sbjct: 64 PEHPAQIAVMIMGELVLGLILGLIVHFLFAAIQTGGDLIAFQMGFKMMNVVDPLTGLQES 123 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 + + +L I+ H + L +S+ IP G + + + F++ Sbjct: 124 ITTQFLYMCSMLVFLSINGHLYMLMGLTQSFDLIPPGGLFITPELINQIIYYSSQIFVLA 183 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL--FLCLSI 232 +++SP + + N+ + + + PQ+ + + P I +G L L + Sbjct: 184 FKIASPIIATVFLVNLGLAFMARTAPQMNVLLLGFPIKIAVGLLFLSLVFQL 235 >gi|261341517|ref|ZP_05969375.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC 35316] gi|288316315|gb|EFC55253.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC 35316] Length = 257 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 45/209 (21%), Positives = 94/209 (44%), Gaps = 10/209 (4%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P L +++ A+A + ++ P L + + + ++ L+ +L G + G+ Sbjct: 30 PVLDNRAFSRRIKTVLALALAAIITPMLPEKVLITELMSMRTV-LLIGEQLLWGMLFGMA 88 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 +++ + LQ G ++S +GL + + + T ++ +I L +V+D H V Sbjct: 89 MQLVFVALQTAGHILSMNMGLGMAMMNDPVNGSSTTVISQMIYTFCGLLFFVMDGHLLVV 148 Query: 147 YALVKSYGTIPIGQELNFGN---IFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203 L K + PIGQ +N I S ++ + +I + P F ++ GLL Sbjct: 149 TILYKGFVWWPIGQAINKPTLLLIVQSLGWIMSSATLIAI----PTTFVMLIVQGGFGLL 204 Query: 204 NKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 N++ P + ++ + P + G LC+S+ Sbjct: 205 NRVSPTLNLFSLGFPISMLFG--LLCISM 231 >gi|315179662|gb|ADT86576.1| Flagellar biosynthesis pathway, component FliR [Vibrio furnissii NCTC 11218] Length = 258 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 R+G+ + +P IP+ VR A++ +++ P + +DL + + + + Sbjct: 21 RIGAVFVSMPFFGDLLIPVWVRSLLALSITVITAPLMPAMPAVDLMSMTSLFLAFEQAVW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 L G + +L V+TL G ++S +GL + + L+ L + + L Sbjct: 81 GLMFGLILHMLFTVFTL----LGQIVSLQMGLGMAMMNDPVNGLSVAILGRIFLVFTTLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H V L++S+ P+G + ++ V++ F L L+ P + ++ Sbjct: 137 FLALEGHLVVIDVLIQSFIVWPVGSGITMLSL-QGIVHIFSWMFSAALALALPAIVSMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 NIS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 196 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|271500074|ref|YP_003333099.1| flagellar biosynthetic protein FliR [Dickeya dadantii Ech586] gi|270343629|gb|ACZ76394.1| flagellar biosynthetic protein FliR [Dickeya dadantii Ech586] Length = 260 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 68/143 (47%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G + G +++ ++ G +I +GL+ T S + + ++ LL Sbjct: 77 QVVIGVMLGFTMQLAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVIARFMNLLALLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H + LV S+ TIPIG GN+F + F L L+ P + + Sbjct: 137 FLSMNGHLWLISLLVDSFHTIPIGASPVSGNVFMTLAGAGGRIFSNGLMLALPLITLLLT 196 Query: 196 FNISIGLLNKLVPQIPIYFISTP 218 N+++GLL++L PQ+ I+ I P Sbjct: 197 INMALGLLSRLAPQLTIFAIGFP 219 >gi|313681367|ref|YP_004059105.1| flagellar biosynthetic protein flir [Sulfuricurvum kujiense DSM 16994] gi|313154227|gb|ADR32905.1| flagellar biosynthetic protein FliR [Sulfuricurvum kujiense DSM 16994] Length = 254 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/148 (20%), Positives = 72/148 (48%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+ G G+++++ + F G IS +G +L +++ ++ ++ + ++ L+ Sbjct: 76 EMLFGLAVGIVLQLAYHVITFAGGQISFMMGFSLASAIDPQSGVSMPIISQFLSLLALMI 135 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 L + D HH + +S T+P+G L ++F ++ + F++ ++ P ++ Sbjct: 136 LLIFDLHHWILLYASQSISTVPLGGFLMTPSLFKYIMHAMTNMFVVGFMIAFPITALSML 195 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGL 223 ++ G+L K +PQ + I P I + Sbjct: 196 ADLIFGMLMKTMPQFNLLVIGMPIKIAV 223 >gi|153834119|ref|ZP_01986786.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01] gi|156975418|ref|YP_001446325.1| flagellar biosynthesis protein FliR [Vibrio harveyi ATCC BAA-1116] gi|148869489|gb|EDL68487.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01] gi|156527012|gb|ABU72098.1| hypothetical protein VIBHAR_03149 [Vibrio harveyi ATCC BAA-1116] Length = 260 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 20/221 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYSKLVM 74 R+ + +M++ ++ ++RL +A + + +P + I+L +F ++ ++ Sbjct: 21 RISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFRGFMTIAEQIV 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + L Q G +Q+S+G + + TPL L Sbjct: 81 IGVAMGMVTQFMIQTFVLLGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ T+PIG F + L F L +S Sbjct: 131 MFLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMASWLGIMFKTALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L LC Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLLC 230 >gi|260598459|ref|YP_003211030.1| flagellar biosynthesis protein FliR [Cronobacter turicensis z3032] gi|260217636|emb|CBA31937.1| Flagellar biosynthetic protein fliR [Cronobacter turicensis z3032] Length = 262 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 50/231 (21%), Positives = 104/231 (45%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS I ++V++ A+ +I L P + + ++ F + L Sbjct: 17 FWPLLRVLALISTAPILSERAISIRVKIGLALLITIALAPNIPGS-NVPIFSLEGLW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T L L I ++ Sbjct: 74 GLQQMLIGVAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLARFIDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L ++ H + L ++ T+PIG + N F + F+ + ++ P + Sbjct: 134 MLLFLTVNGHLWLISILADTFYTLPIGGDAINSNAFMALARAGGLIFVNGVMMALPMITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + N+++GLLN++ PQ+ ++ I P + +G + L + +I H F Sbjct: 194 LLSLNLALGLLNRMAPQLTVFAIGFPLTLSIGIIVLAALMPLIAPFCEHLF 244 >gi|269960155|ref|ZP_06174531.1| flagellar biosynthetic protein FliR [Vibrio harveyi 1DA3] gi|269835126|gb|EEZ89209.1| flagellar biosynthetic protein FliR [Vibrio harveyi 1DA3] Length = 258 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 5/216 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RVG+ + +P + IP+ VR A++ ++ P + +++ F + + L + Sbjct: 21 RVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMTSLF--LAFEQA 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL++ + G IS +GL + + L+ L + I L Sbjct: 79 IWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILGRMFLIFSTLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V +++S+ P+G + ++ VN+ F L L+ P + ++ N Sbjct: 139 ALEGHLLVIDIVIQSFVVWPVGSGITALSL-QGVVNIFGWMFASALALALPAIVSMLLAN 197 Query: 198 ISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 IS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 198 ISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|300822280|ref|ZP_07102421.1| flagellar biosynthetic protein FliR [Escherichia coli MS 119-7] gi|300525163|gb|EFK46232.1| flagellar biosynthetic protein FliR [Escherichia coli MS 119-7] gi|309702239|emb|CBJ01556.1| flagellar biosynthesis protein FliR [Escherichia coli ETEC H10407] gi|323937220|gb|EGB33500.1| flagellar biosynthetic protein FliR [Escherichia coli E1520] Length = 261 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFSAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + L ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|269961632|ref|ZP_06175994.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3] gi|269833673|gb|EEZ87770.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3] Length = 260 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 20/221 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYSKLVM 74 R+ + +M++ ++ ++RL +A + + +P + I+L +F ++ ++ Sbjct: 21 RISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFRGFMTIAEQII 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + L Q G +Q+S+G + + TPL L Sbjct: 81 IGVAMGMVTQFMIQTFVLLGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ T+PIG F + L F L +S Sbjct: 131 MFLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMASWLGIMFKTALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L LC Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLLC 230 >gi|182418459|ref|ZP_02949753.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium butyricum 5521] gi|237666957|ref|ZP_04526942.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377841|gb|EDT75385.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium butyricum 5521] gi|237658156|gb|EEP55711.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 612 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/146 (17%), Positives = 67/146 (45%) Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E+ G + G + + + GS I G ++ T + + + T + +L + Sbjct: 70 IISEVLTGLILGYITNLVFQAAKLAGSWIDIHAGFSMVTVLDPATQTSTTLMGNLFYFVS 129 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L+ ++I+ + ++ +S +P+G + + + F++ ++++ P + Sbjct: 130 LVFFFMINGQELIVKSIYESISIVPLGHTIVYQETVMGAAETIVDFFVLGVKIALPIVLI 189 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTP 218 ++ +I +GL+ + VP IPI P Sbjct: 190 IVMTDICLGLITRTVPTIPIMIFGMP 215 >gi|116328496|ref|YP_798216.1| endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331226|ref|YP_800944.1| endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121240|gb|ABJ79283.1| Endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124915|gb|ABJ76186.1| Endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 259 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 53/246 (21%), Positives = 106/246 (43%), Gaps = 25/246 (10%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-----DLQNFVN 65 + LI+ R+ + + P S I + ++ F+ S++L P + D+ N Sbjct: 10 TFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVTAGFLPPVPGDMGN--- 66 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL- 124 Y +V+ E+ +G + G LI + Q G + +G I D + +T L Sbjct: 67 ---YGLVVLAEVLIGMLLGFLISLIFAAFQMAGEFFNVQLGFGYAE---ILDPVTQTSLP 120 Query: 125 --NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-----GNIFSSFVNMLQT 177 ++L ++G+L + + +F +L S+ I Q L F I+ + + + Sbjct: 121 VISTLKNLLGMLLFLTLGAYRIMFESLAYSFEKI---QVLRFVPEIQNGIYRAMEDAVGA 177 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 F++ +LS P L ++ +S L+ K PQ+ I +S P + +G + + ++ Sbjct: 178 MFLVAFKLSLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLIS 237 Query: 238 QFSHSF 243 Q +F Sbjct: 238 QMGAAF 243 >gi|254228443|ref|ZP_04921869.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25] gi|262393600|ref|YP_003285454.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25] gi|269965691|ref|ZP_06179804.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B] gi|151939031|gb|EDN57863.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25] gi|262337194|gb|ACY50989.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25] gi|269829759|gb|EEZ83995.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B] Length = 260 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 20/221 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVM 74 R+ S +M++ ++ ++RL +A + ++P + I+L +F ++ ++ Sbjct: 21 RISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIELLSFRGFMTIAEQMI 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + L Q G +Q+S+G + + TPL L Sbjct: 81 IGIAMGMVTQFMIQTFVLLGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 131 MFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMAGWLGIMFQTALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + + N+S G++ + PQ+ I+ + + + +G L LC Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLLC 230 >gi|260768791|ref|ZP_05877725.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] gi|260616821|gb|EEX42006.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] gi|315180494|gb|ADT87408.1| hypothetical flagellar biosynthetic protein FliR [Vibrio furnissii NCTC 11218] Length = 258 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 40/215 (18%), Positives = 90/215 (41%), Gaps = 3/215 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R ++ P S +P+ ++ A+ FS++ + + F +A L + Sbjct: 22 RFSGFFLVAPVFGDSKVPLMTKVLLALCFSLLCAGMVTNVPSFNPFSLQAVLFGL--YQF 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL ++++ G +S +GL++ + + + + +L Sbjct: 80 SFGLIFGLAVQMFITIFTLAGQALSMQMGLSMAMMNDPNSGSSVAITGQIFSLTAMLLFL 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 +D H V V S+ P+ Q F +I +++ F L +S P + ++ N Sbjct: 140 SMDGHLIVLDVFVDSFTLWPMNQPYPFESI-KHLISLFSWMFSSALIISIPAIITMLLSN 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++ G ++++ P + ++ + P + LG L +SI Sbjct: 199 VTFGFMSRIAPSLNVFVLGFPMTMFLGLFALLISI 233 >gi|28899011|ref|NP_798616.1| flagellar biosynthesis protein FliR [Vibrio parahaemolyticus RIMD 2210633] gi|260365243|ref|ZP_05777800.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030] gi|260878793|ref|ZP_05891148.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AN-5034] gi|260897388|ref|ZP_05905884.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus Peru-466] gi|260899947|ref|ZP_05908342.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ4037] gi|4322009|gb|AAD15912.1| polar flagellar assembly protein FliR [Vibrio parahaemolyticus] gi|28807230|dbj|BAC60500.1| polar flagellar assembly protein FliR [Vibrio parahaemolyticus RIMD 2210633] gi|308088233|gb|EFO37928.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus Peru-466] gi|308094303|gb|EFO43998.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AN-5034] gi|308107282|gb|EFO44822.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ4037] gi|308115400|gb|EFO52940.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030] Length = 260 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 22/237 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVM 74 R+ S +M++ ++ ++RL +A + ++P + I L +F ++ ++ Sbjct: 21 RISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIQLLSFRGFMTIAEQMI 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + L Q G +Q+S+G + + TPL L Sbjct: 81 IGVAMGMVTQFMIQTFVLLGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 131 MFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDMAGWLGIMFKTALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + N+S G++ + PQ+ I+ + + + +G L +C I +Y SH LY Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLICWYILAGLY--SHYELY 244 >gi|330445378|ref|ZP_08309030.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489569|dbj|GAA03527.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 260 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 54/254 (21%), Positives = 109/254 (42%), Gaps = 47/254 (18%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD---TIDLQNFVNRAYYSKLV 73 R+ S +M + ++ ++RL A+A + ++PFL I+L + + + Sbjct: 20 TRISSMMMAMTFFGARFVSPKIRLYLALAITFAVMPFLPKVPQDIELLSLAGFIITGQQI 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETP-LNSL 127 ++ + +G V + + + L Q G +Q+S+G + + TP L Sbjct: 80 IIGVAMGLVTQFVTQTFVLLGQILG----------MQSSLGFASMVDPANGQNTPVLGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-----------NFGNIFSSFVNMLQ 176 + +L D H ++ A+V S+ T+P+G + FG++F + +NM Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVLSFKTLPVGTAMLGQQDYYELAGWFGHMFKAGLNMAL 189 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG---SLFLCLSIE 233 + +L + N+S G++ + PQ+ I+ + + + LG S F+ L Sbjct: 190 AGIIALLTV-----------NLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLG-- 236 Query: 234 IIVYQFSHSFLYGF 247 IV Q+ + GF Sbjct: 237 -IVPQYEALWQVGF 249 >gi|153836975|ref|ZP_01989642.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ3810] gi|149749748|gb|EDM60493.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ3810] Length = 260 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 22/237 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYSKLVM 74 R+ S +M++ ++ ++RL +A + ++P + I L +F ++ ++ Sbjct: 21 RISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIQLLSFRGFMTIAEQMI 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETPL-NSLI 128 + + +G V +I+ + L Q G +Q+S+G + + TPL L Sbjct: 81 IGVAMGMVTQFMIQTFVLLGQILG----------MQSSLGFASMVDPANGQNTPLLGQLF 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 131 MFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDVAGWLGIMFKTALSMSLS 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + N+S G++ + PQ+ I+ + + + +G L +C I +Y SH LY Sbjct: 191 GIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLICWYILAGLY--SHYELY 244 >gi|156976194|ref|YP_001447100.1| flagellar biosynthesis pathway, component FliR [Vibrio harveyi ATCC BAA-1116] gi|156527788|gb|ABU72873.1| hypothetical protein VIBHAR_04965 [Vibrio harveyi ATCC BAA-1116] Length = 258 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 5/216 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RVG+ + +P + IP+ VR A++ ++ P + +++ F + + L + Sbjct: 21 RVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMTSLF--LAFEQA 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL++ + G IS +GL + + L+ L + I L Sbjct: 79 IWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILGRMFLIFSTLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V +++S+ P+G + ++ VN+ F L L+ P + ++ N Sbjct: 139 ALEGHLLVIDIVIQSFVIWPVGSGITALSL-QGVVNIFGWMFASALALALPAIVSMLLAN 197 Query: 198 ISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 IS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 198 ISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|21672369|ref|NP_660436.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008465|sp|Q8KA35|FLIR_BUCAP RecName: Full=Flagellar biosynthetic protein fliR gi|21622974|gb|AAM67647.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 258 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 69/147 (46%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L+ ++ +G GL + +G +I+ IGL+ + + + ++ + I+ Sbjct: 73 LLFQQILIGIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYIGTSLISRWLNIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL ++ H + + L+ S+ IP+ NIF F+ F+ + + P + Sbjct: 133 NLLFFLTLNVHLYLVFMLIDSFYKIPVDVNFLSANIFFIFLKFSSNIFLNGVMFALPIMI 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTP 218 F+++ + + +LN+L PQI I+ I P Sbjct: 193 FFLISTLIMSILNRLSPQISIFSIGFP 219 >gi|296125238|ref|YP_003632490.1| flagellar biosynthetic protein FliR [Brachyspira murdochii DSM 12563] gi|296017054|gb|ADG70291.1| flagellar biosynthetic protein FliR [Brachyspira murdochii DSM 12563] Length = 267 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 8/233 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ R + +M+ P S + IP +++ A + + P + D I +Q Y + Sbjct: 13 LIMVRFIAILMVAPLFSSNVIPNSIKMALAFIATATIFPLVAD-ISVQAAPTFMEYFLTL 71 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E +G + G L+ + Q + +G + ++ + L L ++ + Sbjct: 72 LNEALIGILIGFLMSIIFAAYQVMANFFEVQMGFGISETVDPISQVTVPVLGQLQSLVVV 131 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELN-------FGNIFSSFVNMLQTTFMIMLRLS 186 L ID V L S+ +P+ + + F + + + + F I L L+ Sbjct: 132 LIFIAIDGPSWVVRTLFYSFKAMPVLSDASKAVFASSFNGVIDRMIYYMSSLFSIALSLA 191 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 P + + ++S+GLL K PQ+ I + P IG+G + + I ++V F Sbjct: 192 LPIMLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIGVGIVSYYILIPVLVSNF 244 >gi|318605251|emb|CBY26749.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp. palearctica Y11] Length = 260 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 5/236 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P LS I +V++ A+ + ++ P L +++ + A + + Sbjct: 17 FWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSL-PPVNIPLVSSGALW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G GL ++ ++ G VI +GL+ T S L L+ ++ Sbjct: 74 AGQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLARLLNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L D H + L S+ T+PI E GN F + FM L L+ P + Sbjct: 134 MLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSWIFMNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H L+G F Sbjct: 194 LLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEH--LFGEF 247 >gi|325109029|ref|YP_004270097.1| type III secretion system inner membrane R protein [Planctomyces brasiliensis DSM 5305] gi|324969297|gb|ADY60075.1| type III secretion system inner membrane R protein [Planctomyces brasiliensis DSM 5305] Length = 330 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 53/260 (20%), Positives = 106/260 (40%), Gaps = 51/260 (19%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---------- 59 M L++ R+ +++ P S IP+Q+R+ A ++++ P L + D Sbjct: 30 MVFLLVLVRLSGLMVIGPFFGHSSIPVQMRMLLAFTLALIVAPALPNVHDRGFQALDQNQ 89 Query: 60 -----------------LQN--------FVNRAYYSKL-------------VMVELFLGC 81 LQ+ V+RA +S++ V EL +G Sbjct: 90 DGQLTGAEIPRGVRESLLQDPVAQPEQLAVSRAEFSRMHAVPSTALDLLWVVGTELLIGM 149 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI-- 139 + G + V GLQ G G L + + +P L+ ++G AL V+ Sbjct: 150 LLGFGVLVVLSGLQLAGETFDQQAGTALNEVFNPALGTSSSPTGQLLFLLGTTALLVMPP 209 Query: 140 -DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 D H + L++++ IP+G + +++ + +I +++++P L + ++ Sbjct: 210 FDGHLMMLMNLLQTFEVIPVGLAWVDMSTLDVLRHLISQSLVIAIQIAAPLLAAMALLSV 269 Query: 199 SIGLLNKLVPQIPIYFISTP 218 ++G L VPQI + + P Sbjct: 270 AMGFLGYTVPQINVLVLGFP 289 >gi|254491753|ref|ZP_05104932.1| flagellar biosynthetic protein FliR [Methylophaga thiooxidans DMS010] gi|224463231|gb|EEF79501.1| flagellar biosynthetic protein FliR [Methylophaga thiooxydans DMS010] Length = 260 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 49/215 (22%), Positives = 103/215 (47%), Gaps = 17/215 (7%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV-- 75 R+ + +M+ P S ++I + R+ A+A SIV++P I +Q A ++ +++ Sbjct: 21 RIAAMVMVAPIFSSNFISQRSRILMAVAISIVIVP----NIPVQVPQVDALSAEGLLIIA 76 Query: 76 -ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G G ++++ G +I+ +GL SM + P+ S ++ + Sbjct: 77 HQILIGACMGFMLQLLFNAFIVAGQIIAMQMGLGF-ASMVDPQNGVMVPVISQFYLVFIT 135 Query: 135 ALWV-IDFHHQVFYALVKSYGTIPIG----QELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++V I+ H + + +S+ T+PI ++F +I + M +I L P Sbjct: 136 LIFVSINGHLILIQVMSESFVTLPIAATGLSPVDFRDIVAQASWMYAAGVIIAL----PA 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + ++ N++ G+L++ PQI + I P I LG Sbjct: 192 IGSLMMVNLAFGILSRAAPQISPFSIGFPMTIILG 226 >gi|24215309|ref|NP_712790.1| flagellar biosynthetic protein [Leptospira interrogans serovar Lai str. 56601] gi|24196410|gb|AAN49808.1| flagellar biosynthetic protein [Leptospira interrogans serovar Lai str. 56601] Length = 259 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 15/238 (6%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ R+ + + P S I + ++ F+ S++L P + + + Y +V Sbjct: 13 LILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVIAGFLPPVP-GDMGSYGLVV 71 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL---NSLIGI 130 + E +G + G LI + Q G + +G I D + +T L ++L + Sbjct: 72 IAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAE---ILDPVTQTSLPVISTLKNL 128 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-----GNIFSSFVNMLQTTFMIMLRL 185 +G+L + + +F +L S+ I Q L F I+ + + + F + RL Sbjct: 129 LGMLLFLTLGAYRIMFESLAYSFEKI---QVLRFVPEIQNGIYKAMEDAVGAMFFVAFRL 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 S P L ++ +S L+ K PQ+ I +S P + +G + + +V Q +F Sbjct: 186 SLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMGAAF 243 >gi|312884899|ref|ZP_07744589.1| flagellar biosynthesis protein FliR [Vibrio caribbenthicus ATCC BAA-2122] gi|309367376|gb|EFP94938.1| flagellar biosynthesis protein FliR [Vibrio caribbenthicus ATCC BAA-2122] Length = 260 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 20/228 (8%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRA 67 S F R+G+ +M++ ++ +VRL +A + ++P + I+L +F Sbjct: 14 SYFWPYTRIGAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPVIPAAPQNIELLSFAGFI 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AET 122 + +++ + +G V LI+ + + Q G +Q+S+G + + T Sbjct: 74 TVLEQILIGVAMGTVTQFLIQTFVILGQILG----------MQSSLGFASMVDPANGQNT 123 Query: 123 PL-NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 PL L + + D H ++ +V S+ ++P+G F L F Sbjct: 124 PLLGQLFMFLATMFFLATDGHLKMITFVVMSFQSLPVGVGALTNVDFRELALWLGIMFQF 183 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 L +S + + N+S G++ + PQ+ I+ + + + +G L +C Sbjct: 184 ALSMSLSGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVG-LLIC 230 >gi|167576638|ref|ZP_02369512.1| flagellar biosynthetic protein FliR, putative [Burkholderia thailandensis TXDOH] Length = 258 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 41/201 (20%), Positives = 86/201 (42%), Gaps = 12/201 (5%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+ + + P + S +P ++R+ A+ +++ LP + D + + F R LV E Sbjct: 20 CRILAALSAAPFIGESTVPARMRVMIALFLALIALPAV-DPVAIPVFSAR---GALVAAE 75 Query: 77 -LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG---IIG 132 + +G + G+L G ++++ +GL + ++D L + + G + Sbjct: 76 QILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAV---MNDPLNGATSDVVSGFMLVTS 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + +D H V L S+ P+G + + F L++P +F Sbjct: 133 ILLFFAMDAHLVVVQVLYTSFRVWPVGSPIGLPAL-KPLAYQAAWLFSTTTLLAAPLVFA 191 Query: 193 YIVFNISIGLLNKLVPQIPIY 213 +V I L++ P I ++ Sbjct: 192 TVVLQIGKSYLSRATPSINLF 212 >gi|34498460|ref|NP_902675.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC 12472] gi|34104315|gb|AAQ60674.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC 12472] Length = 259 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 45/223 (20%), Positives = 106/223 (47%), Gaps = 15/223 (6%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CR+ + + P + + +PM+ R+ A+A ++ +P + + F + + + Sbjct: 20 CRLMAAFAIAPFIGDAVVPMRARVGLALALAVACIPGMPAHSPIDPFTLHGVAASVE--Q 77 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G + GL ++ L G ++S+ +GL++ + + ++SL+ ++ L Sbjct: 78 VVIGLLFGLAFQLTLSVLALLGFLLSSQMGLSMAIMNDPGNGNSSDVVSSLLYLLAALLF 137 Query: 137 WVIDFH---HQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSPFLF 191 + +D H QV YA +++ P+G + + + ++ V + + MI L+ P +F Sbjct: 138 FAMDGHLVLVQVVYASFRAW---PLGGGIPQASLPVLAASVGWVMSAAMI---LALPVVF 191 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLSI 232 V G++N++ P + ++ + P L GL +L L + + Sbjct: 192 ATFVVQAGFGMINRVAPALNLFSLGFPVVTLFGLSTLTLLMQV 234 >gi|167567198|ref|ZP_02360114.1| flagellar biosynthetic protein FliR, putative [Burkholderia oklahomensis EO147] Length = 254 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 46/215 (21%), Positives = 105/215 (48%), Gaps = 9/215 (4%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M+ +PE+ + ++ CR+ + + P + S +P++ R+ ++ ++V LP + I++ Sbjct: 1 MSAAPEM-LSRIWWPFCRILAALSAAPIVGESTVPLRARVMLSLLLAVVALPAV-APIEV 58 Query: 61 QNFVNRAYYSKLVMVE-LFLGCVHGLLIRVYTLGL-QFTGSVISTAIGLNLQTSMGISDS 118 F R LV E + +G + G ++ +TL + G +I++ +GL + + Sbjct: 59 AAFSARG---ALVAAEQILIGLLFGTMLH-FTLAIFMMLGYLIASQMGLAMAVMNDPLNG 114 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT 178 + ++S++ ++ +L + ID H V L S+ P+G ++ ++ + + Sbjct: 115 TSSDAISSVLLVVYMLLFFSIDAHLVVTQILYTSFRVWPVGSPVDLLSL-KPLLYQVGWL 173 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213 F L++P +F +V I G L++ P I ++ Sbjct: 174 FASTTLLATPIVFATLVLQIGKGYLSRATPGINLF 208 >gi|332161330|ref|YP_004297907.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665560|gb|ADZ42204.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861096|emb|CBX71363.1| flagellar biosynthetic protein fliR [Yersinia enterocolitica W22703] Length = 260 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 5/236 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P LS I +V++ A+ + ++ P L +++ + A + + Sbjct: 17 FWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSL-PPVNIPLVSSGALW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G GL ++ ++ G VI +GL+ T S L L+ ++ Sbjct: 74 AGQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLARLLNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L D H + L S+ T+PI E GN F + FM L L+ P + Sbjct: 134 MLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTEAGSLIFMNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H L+G F Sbjct: 194 LLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEH--LFGEF 247 >gi|28901399|ref|NP_801054.1| putative flagellar biosynthetic protein FliR [Vibrio parahaemolyticus RIMD 2210633] gi|153836031|ref|ZP_01988698.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ3810] gi|260362953|ref|ZP_05775822.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030] gi|260880240|ref|ZP_05892595.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AN-5034] gi|260895357|ref|ZP_05903853.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus Peru-466] gi|28809946|dbj|BAC62887.1| putative flagellar biosynthetic protein FliR [Vibrio parahaemolyticus RIMD 2210633] gi|149750785|gb|EDM61530.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ3810] gi|308085711|gb|EFO35406.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus Peru-466] gi|308092305|gb|EFO42000.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AN-5034] gi|308112144|gb|EFO49684.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030] gi|328469333|gb|EGF40279.1| putative flagellar biosynthetic protein FliR [Vibrio parahaemolyticus 10329] Length = 258 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVMV 75 RVG+ + +P + IP+ VR A++ ++ P + T++L + + + + Sbjct: 21 RVGAVFLSMPFFGDALIPIWVRSLLALSIVVITAPLMPTMPTVELFSLTSLFLAFEQAIW 80 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 L G + +L V+T+ G IS +GL + + L+ L + I L Sbjct: 81 GLMFGLILHMLFNVFTM----LGQTISLQMGLGMAMMNDPVNGLSVAILGRIFLIFSTLL 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H V +++S+ P+G + ++ +N+ F L L+ P + ++ Sbjct: 137 FLSLEGHLLVIDIVIQSFVVWPVGSGITALSL-QGVINVFGWMFAASLALALPAIVSMLL 195 Query: 196 FNISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 NIS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 196 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|85058019|ref|YP_453721.1| flagellar biosynthesis protein FliR [Sodalis glossinidius str. 'morsitans'] gi|84778539|dbj|BAE73316.1| flagellar protein FliR [Sodalis glossinidius str. 'morsitans'] Length = 262 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 3/189 (1%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P LS I +V++ A+ ++++ P L V + L+M +L +G + GL Sbjct: 29 PLLSEKIIAKKVKIGLAVLITLLIAPGLEPVATPLVSVAGLW---LIMAQLLIGVIVGLT 85 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 +++ ++F G VI +GL+ T + L+ ++ LL +D H + Sbjct: 86 LQLAFSTVRFAGEVIGLQMGLSFATFFDPFSGPNSPIIARLLNLLLLLLFLSLDAHLVMI 145 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKL 206 ALV S+ +PI G F + + F L L+ P + ++ NI++G+LN+L Sbjct: 146 DALVDSFQLLPIAPLPLNGESFLALARAVGLLFSCGLMLALPAMTLLLLLNITLGVLNRL 205 Query: 207 VPQIPIYFI 215 PQ ++ I Sbjct: 206 TPQFSVFVI 214 >gi|283850713|ref|ZP_06368000.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. FW1012B] gi|283573956|gb|EFC21929.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. FW1012B] Length = 259 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 41/220 (18%), Positives = 99/220 (45%), Gaps = 1/220 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L + R+ + LLP + +P V+ + ++ + P L L N + Sbjct: 13 SFLLTLMRISVVLFLLPFFGANLLPNPVKGALCLLLTLAVFPMLSFPAALMP-ANPWTLA 71 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + + E+ +G + +L+ +Q G+++ ++G +L S+ +E+ L L+ Sbjct: 72 LMFLGEVIMGLLLDILVMFLFSAVQCAGAIMGFSMGFSLMNSIDPMTGASESGLGHLMNQ 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + ++ H + + +S+ +P G + + F++ L++++P + Sbjct: 132 VTTMLFLCLNGHLFLLDCMAQSFTLVPPGGLFLSPALGEHLIAFSGQIFVMALKIAAPIM 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + ++++ L+ + PQ+ + FI P I +G LF+ L Sbjct: 192 ASIFMVDLALALVARAAPQMNVLFIGFPLKISVGFLFMTL 231 >gi|123442776|ref|YP_001006753.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089737|emb|CAL12590.1| flagellar biosynthetic protein FliR [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 260 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 5/236 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + I P LS I +V++ A+ + ++ P L +++ + A + + Sbjct: 17 FWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSL-PPVNIPLVSSGALW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G GL ++ ++ G VI +GL+ T S L L+ ++ Sbjct: 74 AGQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLARLLNLLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L D H + L S+ T+PI E GN F + FM L L+ P + Sbjct: 134 MLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H L+G F Sbjct: 194 LLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEH--LFGEF 247 >gi|45657252|ref|YP_001338.1| flagellar biosynthetic protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600490|gb|AAS69975.1| flagellar biosynthetic protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 259 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 15/238 (6%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ R+ + + P S I + ++ F+ S++L P + + + Y +V Sbjct: 13 LILSRLMGLLSVAPVFSYPSIGVPQKMIFSFLVSVILFPVIAGFLPPVP-GDMGSYGLVV 71 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL---NSLIGI 130 + E +G + G LI + Q G + +G I D + +T L ++L + Sbjct: 72 IAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAE---ILDPVTQTSLPVISTLKNL 128 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-----GNIFSSFVNMLQTTFMIMLRL 185 +G+L + + +F +L S+ I Q L F I+ + + + F + RL Sbjct: 129 LGMLLFLTLGAYRIMFESLAYSFEKI---QVLRFVPEIQNGIYKAMEDAVGAMFFVAFRL 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 S P L ++ +S L+ K PQ+ I +S P + +G + + +V Q +F Sbjct: 186 SLPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMGAAF 243 >gi|254228806|ref|ZP_04922229.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25] gi|262396475|ref|YP_003288328.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25] gi|151938753|gb|EDN57588.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25] gi|262340069|gb|ACY53863.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25] Length = 258 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 5/216 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RVG+ + +P + IP+ +R A++ ++ P + ++ F + + L + Sbjct: 21 RVGAVFISMPFFGDAIIPVWIRTLLALSIVVITAPLMPPMPQVELFSMTSLF--LAFEQA 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL++ + G V+S +GL + + L+ L + I L Sbjct: 79 IWGVMFGLILHMLFNVFTMLGQVVSLQMGLGMAMMNDPINGLSVAILGRIFLIFSTLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V +++S+ P+G + ++ VN+ F L L+ P + ++ N Sbjct: 139 ALEGHLLVIDIVIQSFVVWPVGSGITSLSL-QGVVNIFGWMFASALALALPAIVSMLLAN 197 Query: 198 ISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 IS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 198 ISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|212702655|ref|ZP_03310783.1| hypothetical protein DESPIG_00683 [Desulfovibrio piger ATCC 29098] gi|212673927|gb|EEB34410.1| hypothetical protein DESPIG_00683 [Desulfovibrio piger ATCC 29098] Length = 278 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 18/235 (7%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLP----FLWDTIDLQNFV 64 + +L L + R+ + + + P L + + Q+RL +A + L P L D I L + Sbjct: 16 LTALLLGMPRLFALVTVAPFLGSAVVTGQIRLLLVLALYLPLHPVIVSHLTDEITLSAAL 75 Query: 65 NRAYYSKLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + A +L ++ E LG + G L + +Q G + G + I Sbjct: 76 SLAVGGRLALLLLKEAVLGLMIGFLAGIVFWTVQSAGFFMDNQRGATMAEGADILSGDQS 135 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALV----KSYGTIPIGQELNFGNIFSS---FVNM 174 +PL L+ +L I + F A V SYG P+ Q L + F Sbjct: 136 SPLGQLL----FQSLVYIFYTSGAFLAFVGLVYASYGIWPVTQLLPLDVPQGAPLYFAEK 191 Query: 175 LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + ML L+ P ++ ++++GL+N+ Q+ +Y ++ P G+ + LC Sbjct: 192 VGWLMGHMLLLAGPIAAACLLTDVALGLINRFASQLNVYVLAMPIKCGIAAFLLC 246 >gi|167574622|ref|ZP_02367496.1| flagellar biosynthetic protein FliR, putative [Burkholderia oklahomensis C6786] Length = 254 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 105/215 (48%), Gaps = 9/215 (4%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M+ +PE+ + ++ CR+ + + P + S +P++ R+ ++ ++V LP + +++ Sbjct: 1 MSAAPEM-LSRIWWPFCRILAALSAAPIVGESTVPLRARVMLSLLLAVVALPAV-APVEV 58 Query: 61 QNFVNRAYYSKLVMVE-LFLGCVHGLLIRVYTLGL-QFTGSVISTAIGLNLQTSMGISDS 118 F R LV E + +G + G ++ +TL + G +I++ +GL + + Sbjct: 59 AAFSARG---ALVAAEQILIGLLFGTMLH-FTLAIFMMLGYLIASQMGLAMAVMNDPLNG 114 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTT 178 + ++S++ ++ +L + ID H V L S+ P+G ++ ++ + + Sbjct: 115 TSSDAISSVLLVVYMLLFFSIDAHLVVTQILYTSFRVWPVGSPVDLLSL-KPLLYQVGWL 173 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213 F L++P +F +V I G L++ P I ++ Sbjct: 174 FASTTLLATPIVFATLVLQIGKGYLSRATPGINLF 208 >gi|254255043|ref|ZP_04948360.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa AUO158] gi|124899688|gb|EAY71531.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa AUO158] Length = 287 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 6/119 (5%) Query: 98 GSVISTAIGLNLQTSMGISDSLAETP---LNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154 GS++S+ IGL++ ++D + P L++++ ++ +L + +D H + L +S+ Sbjct: 123 GSIVSSQIGLSMAQ---MNDPMNGQPSDVLSNVMYVLFILLFFAVDGHLLMTQVLARSFD 179 Query: 155 TIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213 PIG + F + F L+ P F +V + +GLLN+ P + ++ Sbjct: 180 VWPIGGSAFDFSALRRFALAVGWMFSAAAALALPVTFATLVVQVGLGLLNRAAPTLNLF 238 >gi|149908445|ref|ZP_01897108.1| flagellar biosynthesis protein [Moritella sp. PE36] gi|149808608|gb|EDM68543.1| flagellar biosynthesis protein [Moritella sp. PE36] Length = 261 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 49/237 (20%), Positives = 105/237 (44%), Gaps = 22/237 (9%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL--WDTIDLQNFVNRAYYSKLVM 74 R+ +M++ P +RL + A ++++ P L +DL + + + + Sbjct: 20 ARLSGMVMVMIVSGAKTTPTIIRLFYCFALTVMVAPVLPPMPNVDLFSLSSFMIILQQSL 79 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD--SLAETPLNSLIG--- 129 + + +G V +LI+ + L G +I+ +QTS+G + A ++ +IG Sbjct: 80 IGIAIGFVTVMLIQTFVLA----GQIIA------MQTSLGFASMADPASGQMSPVIGQIY 129 Query: 130 -IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G L ++ H + +VKS+ T+P+ + + F L +S Sbjct: 130 ILLGTLVYLSVNGHLFMIETVVKSFETLPVSASGLVAIQYYEIAGWMSVMFAAALSMSLS 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL--GSLFLCLSIEIIVYQFSHSF 243 + +V N S G++ K PQ+ ++ S + +G+ G + LS++ V+ F + Sbjct: 190 AVVAMLVINFSFGVMTKAAPQLNVF--SLGFAVGMVAGLFIIYLSLKSFVFHFDAQW 244 >gi|163801857|ref|ZP_02195754.1| flagellar biosynthesis protein R [Vibrio sp. AND4] gi|159174365|gb|EDP59169.1| flagellar biosynthesis protein R [Vibrio sp. AND4] Length = 260 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 43/220 (19%), Positives = 99/220 (45%), Gaps = 21/220 (9%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVL---LPFLWDTIDLQNFVNRAYYSKLVM 74 R+ + +M++ ++ ++RL +A + + +P + I+L +F ++ ++ Sbjct: 21 RISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFRGFMTIAEQII 80 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 + + +G V +I+ + L Q G +Q+S+G + S+ + ++G L Sbjct: 81 IGVAMGMVTQFMIQTFVLLGQILG----------MQSSLGFA-SMVDPANGQSTPLLGQL 129 Query: 135 ALWVI-------DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++++ D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMFLVTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNALDFRELAGWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLF 227 + + N+S G++ + PQ+ I+ + + + +G LF Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFTFALIIGLLF 229 >gi|153831560|ref|ZP_01984227.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01] gi|148872070|gb|EDL70887.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01] Length = 258 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 5/216 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ + +P + IP+ VR A++ ++ P + +++ F + + L + Sbjct: 21 RIGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMTSLF--LAFEQA 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 G + GL++ + G IS +GL + + L+ L + I L Sbjct: 79 IWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAMMNDPVNGLSVAILGRMFLIFSTLLFL 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 ++ H V +++S+ P+G + ++ VN+ F L L+ P + ++ N Sbjct: 139 ALEGHLLVIDIVIQSFVIWPVGSGITALSL-QGVVNIFGWMFASALALALPAIVSMLLAN 197 Query: 198 ISIGLLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 IS G++N+ P + +Y + P L+GL S+ + +S Sbjct: 198 ISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVS 233 >gi|218699489|ref|YP_002407118.1| flagellar export pore protein [Escherichia coli IAI39] gi|218369475|emb|CAR17240.1| flagellar export pore protein [Escherichia coli IAI39] Length = 239 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 3/198 (1%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P LS +P +V+L AM + + P L D+ F A + L + ++ +G G Sbjct: 9 PILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--LAVQQILIGIALGFT 65 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 ++ ++ G +I +GL+ T + S L L ++ ++ LL + H + Sbjct: 66 MQFAFAAVRTAGEIIGLQMGLSFATFVDPSSHLNMPVLARIMDMLALLLFLTFNGHLWLI 125 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKL 206 LV ++ T PIG E N F + F+ L L+ P + + N+++GLLN++ Sbjct: 126 SLLVDTFHTQPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRM 185 Query: 207 VPQIPIYFISTPYLIGLG 224 PQ+ I+ I P + +G Sbjct: 186 APQLSIFVIGFPLTLTVG 203 >gi|329298605|ref|ZP_08255941.1| flagellar biosynthesis protein FliR [Plautia stali symbiont] Length = 262 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 47/217 (21%), Positives = 105/217 (48%), Gaps = 3/217 (1%) Query: 27 PGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL 86 P L+ IP +V++ A+ + +L+P L +++ F ++ +++ +L +G GL Sbjct: 31 PLLNERSIPKRVKIGLAVVTTWILMPLL-PPVEVTLFTPAGFW--MLVQQLLIGVGIGLT 87 Query: 87 IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVF 146 +++ ++ G +I +GL+ T + + + L + ++ +L + H + Sbjct: 88 MQLAFSAMRLVGEMIGLQMGLSFATLLDPNSRINMPLLARFLDMLAMLLFLTFNGHLWLI 147 Query: 147 YALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKL 206 LV S+ T+PI + N F + F+ + L+ P + + N+++GLLN++ Sbjct: 148 SLLVDSFHTLPINDQPLNANAFMALTKAASLIFLNGMMLALPLIILLLTLNLALGLLNRV 207 Query: 207 VPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 PQ+ ++ I P + +G L L + + ++ H F Sbjct: 208 SPQLSVFAIGFPITLTVGILSLGMMMPLLAPFCEHLF 244 >gi|284007675|emb|CBA73398.1| type III secretion sytem SpaR,YscT,HrcT,EscT [Arsenophonus nasoniae] Length = 254 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 17/167 (10%) Query: 58 IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGIS- 116 I + + + + + L VELF+G G+L+ T +++AIG + G S Sbjct: 57 IVMPTWQSTSQFIALSAVELFIGLTMGILMA--------TPFWLASAIGEFIDNQRGASI 108 Query: 117 ----DSLAETPLNSLIGIIGLLAL-WVIDFHHQVFY--ALVKSYGTIPIGQELNFGNIFS 169 D + +SL +I + + W ++ + + +++SY +PIG +N+ ++F+ Sbjct: 109 GDMLDPTTGSESSSLASLINMFCVGWFLNQGGMIEFVATIIESYQQLPIGCPINYVDLFA 168 Query: 170 SFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 L M+ + LS+P L + I +G+ + PQ+ + +S Sbjct: 169 -LGKWLTRFIMLAITLSAPLLIALFMLEIGLGVYSLFCPQLNAFSLS 214 >gi|296103626|ref|YP_003613772.1| flagellar biosynthetic protein FliR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058085|gb|ADF62823.1| flagellar biosynthetic protein FliR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 186 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 3/173 (1%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP-LNSLIGIIGLL 134 ++ +G GL +++ ++ G +I +GL+ T +P ++ + ++ L Sbjct: 5 QVIIGAAMGLTLQLLFAAVRMAGEIIGMQMGLSFATF--FDPGAGNSPVISRFLNLLVTL 62 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + H + L ++ T+PI F V F L L P + + Sbjct: 63 LFLAFNGHLWLLALLADTFQTLPIDATPLHAGGFMYLVTHAGMIFSQGLMLGLPVIALLL 122 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 N +GLLN+L PQ+ I+ I P + G L L L E + F GF Sbjct: 123 CINFILGLLNRLTPQLSIFVIGFPLTLTFGMLALFLIAETLAPFFERLMATGF 175 >gi|62180012|ref|YP_216429.1| secretion system apparatus SsaT [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127645|gb|AAX65348.1| Secretion system apparatus SsaT [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714479|gb|EFZ06050.1| secretion system apparatus SsaT [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 259 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F+S P Sbjct: 210 QQLNVFFLSMP 220 >gi|205352863|ref|YP_002226664.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272644|emb|CAR37554.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|309243391|gb|ADO51967.1| SsaT [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627935|gb|EGE34278.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 259 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F+S P Sbjct: 210 QQLNVFFLSMP 220 >gi|57505424|ref|ZP_00371352.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis RM3195] gi|57016249|gb|EAL53035.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis RM3195] Length = 255 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 91/211 (43%), Gaps = 4/211 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+ I+ P S + IPM V+ ++ FL+ L+ +++ + Sbjct: 17 LLFARLSGLIVFFPFFSHNSIPMVVKTTIVFFLTM----FLYPLAKLEALHLDSFFILQL 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + GL+I+ + + G I+ +G + + + S + + ++ ++ L Sbjct: 73 LSEVLFGMIAGLIIQFIFVIIMMAGEQIAFTMGFTMASVLDPSSGINMPVTSQILNLLAL 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L D HH + L +S I +G N + + + F+I ++ P L Sbjct: 133 LFFLAFDGHHLMLLFLSQSLTYINLGGFYPSENFMQYLNSGMLSVFVIGFTMAFPILAIS 192 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 ++ ++ G+L K +PQ + I P I L Sbjct: 193 LLADVIFGILMKTMPQFNLLVIGYPIKIALA 223 >gi|171316794|ref|ZP_02906005.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] gi|171098052|gb|EDT42868.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] Length = 271 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Query: 118 SLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQ 176 S TP+++L G I A W + + L +SYG P+ I SSF+ Sbjct: 126 SEQSTPISTLFGQIANTAFWALGGGVVLLGMLYESYGWSPVSAAWPESTGILSSFLLQQT 185 Query: 177 TTFMIML-RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 T M M+ +L++P F ++ + K P++ + +S P Sbjct: 186 DTLMQMIAKLAAPMAFMLLLVDFGFAFAAKSAPKLDLMNLSQP 228 >gi|330828811|ref|YP_004391763.1| flagellar biosynthetic protein fliR [Aeromonas veronii B565] gi|328803947|gb|AEB49146.1| Flagellar biosynthetic protein fliR [Aeromonas veronii B565] Length = 265 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 53/246 (21%), Positives = 112/246 (45%), Gaps = 27/246 (10%) Query: 1 MTISPEIIMM---SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT 57 MT + +IM S+ + RV S +M++ P +VR+ A+A + ++ P L Sbjct: 1 MTYTTALIMEWLSSILWPLARVSSLLMVMAVFGSRLAPARVRMGLALAITFLIAPLLPKM 60 Query: 58 IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117 ++ F ++ ++ +L +G GL+ + G VI+ +QTS+G + Sbjct: 61 PPIELFSAGSFL--VLGQQLLIGIALGLMTQFLMESFVMAGQVIA------MQTSLGFAT 112 Query: 118 SLAETPLNS----LIG----IIGLLALWVIDFHHQVFYALVKSYGTIPI---GQELNFGN 166 + P+N ++G ++ L +D H + ++ S+ T+P+ G ++ Sbjct: 113 LV--DPMNGQSAPVVGQFYLMLATLVFLALDGHLVMLRLVILSFETLPVSEHGLSVSSMK 170 Query: 167 IFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL 226 S+F+ ++ ++M S + ++ N + G++ + PQ+ I+ I + G L Sbjct: 171 TLSAFLGVMYQAALVM---SLSAIVALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLL 227 Query: 227 FLCLSI 232 L L+I Sbjct: 228 ILWLTI 233 >gi|193061932|ref|ZP_03043028.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E22] gi|194426275|ref|ZP_03058830.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B171] gi|260845710|ref|YP_003223488.1| T3SS structure protein EscT [Escherichia coli O103:H2 str. 12009] gi|260858249|ref|YP_003232140.1| T3SS structure protein EscT [Escherichia coli O26:H11 str. 11368] gi|13447703|gb|AAK26702.1|AF200363_10 EscT [Escherichia coli] gi|18034507|gb|AAL57529.1|AF453441_13 EscT [Escherichia coli] gi|17384637|emb|CAC81849.1| EscT protein [Escherichia coli] gi|57434470|emb|CAI43887.1| EscT protein [Escherichia coli] gi|192932152|gb|EDV84750.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E22] gi|194415583|gb|EDX31850.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B171] gi|195183211|dbj|BAG66756.1| T3SS structure protein EscT [Escherichia coli O111:H-] gi|254692327|emb|CAR47968.1| EscT protein [Escherichia coli] gi|254692395|emb|CAR48038.1| EscT protein [Escherichia coli] gi|257756898|dbj|BAI28400.1| T3SS structure protein EscT [Escherichia coli O26:H11 str. 11368] gi|257760857|dbj|BAI32354.1| T3SS structure protein EscT [Escherichia coli O103:H2 str. 12009] gi|323155906|gb|EFZ42073.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli EPECa14] gi|323163022|gb|EFZ48855.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E128010] Length = 258 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%) Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT--SMGISDSLAETPLNSL 127 + +V+ E+ +G GL + + G +I T G + + + ISDS +S+ Sbjct: 69 TGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDS------SSI 122 Query: 128 IGIIGLLALWVIDFHH----QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IM 182 G+I + VI H V L SY +P+ ++ F F+ L +F+ +M Sbjct: 123 TGVILYQFITVIFVIHGGIQSVLDKLYLSYEILPLQADIAFNRALVDFLFSLWDSFIKLM 182 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 L S P + + ++ G LNK PQ+ ++ +S P Sbjct: 183 LSFSIPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLP 218 >gi|330720473|gb|EGG98777.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC2047] Length = 136 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 142 HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201 H V ++S+ +P+G E+ IF F L ++ P L +V N + G Sbjct: 22 HLVVIEVFIESFKVMPVGYEVFDVGIFMQLAKWGAWMFASALVIALPALCALLVVNFAFG 81 Query: 202 LLNKLVPQIPIYFISTP--YLIGLGSLFLCLS 231 ++N+ PQ+ ++ + P L+GL +F+ L+ Sbjct: 82 IMNRAAPQLNVFALGFPVSMLVGLMIVFVTLT 113 >gi|168239305|ref|ZP_02664363.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734680|ref|YP_002114434.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710182|gb|ACF89403.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288015|gb|EDY27402.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 259 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSVPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|324114207|gb|EGC08180.1| flagellar biosynthetic protein FliR [Escherichia fergusonii B253] gi|325497692|gb|EGC95551.1| flagellar biosynthesis protein FliR [Escherichia fergusonii ECD227] Length = 262 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P + +L + ++ + P L D+ F A + + Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPML-PPHDVPIFSYAAVW--V 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AIQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARILDMLV 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISILVDTFHTLPIGGEPLNSNAFLALTRAGGLIFLNGLMLALPVITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ ++ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSVFVIGFPLTLTVG 225 >gi|297582019|ref|ZP_06943938.1| flagellar biosynthetic protein FliR [Vibrio cholerae RC385] gi|297533714|gb|EFH72556.1| flagellar biosynthetic protein FliR [Vibrio cholerae RC385] Length = 260 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 47/224 (20%), Positives = 100/224 (44%), Gaps = 26/224 (11%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT------IDLQNFVNRAYYSK 71 R+ + +M++ ++P +VRL +A ++ ++P + + LQ F+ + Sbjct: 21 RIAAMLMVMTVTGARFVPARVRLYLGLALTLAVMPAIPAVPSGIALLSLQGFM---ITLE 77 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-----AETP-LN 125 +++ + +G V L++++ + Q G +Q+S+G + + TP L Sbjct: 78 QIVIGVAMGMVTQFLVQIFVMLGQILG----------MQSSLGFASMVDPANGQNTPLLG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L ++ L V D H ++ +V S+ ++PIG F L F L + Sbjct: 128 QLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAV 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 S + + N+S G++ + PQ+ I+ + + + +G L LC Sbjct: 188 SLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVG-LLLC 230 >gi|218549275|ref|YP_002383066.1| flagellar biosynthesis protein FliR [Escherichia fergusonii ATCC 35469] gi|218356816|emb|CAQ89444.1| flagellar export pore protein [Escherichia fergusonii ATCC 35469] Length = 267 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P + +L + ++ + P L D+ F A + + Sbjct: 22 FWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPML-PPHDVPIFSYAAVW--V 78 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 79 AIQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARILDMLV 138 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 139 LLLFLTFNGHLWLISILVDTFHTLPIGGEPLNSNAFLALTRAGGLIFLNGLMLALPVITL 198 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ ++ I P + +G Sbjct: 199 LLTLNLALGLLNRMAPQLSVFVIGFPLTLTVG 230 >gi|170769445|ref|ZP_02903898.1| flagellar biosynthetic protein FliR [Escherichia albertii TW07627] gi|170121769|gb|EDS90700.1| flagellar biosynthetic protein FliR [Escherichia albertii TW07627] Length = 243 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 3/207 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 RV + I P LS +P +V+L AM + + P + D+ F A + L + ++ Sbjct: 2 RVLALISTAPILSERSVPKRVKLGLAMMITFAITPAI-PANDVPIFSFYALW--LAVQQI 58 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G ++ ++ G +I +GL+ T + L L ++ ++ LL Sbjct: 59 LIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMDMLALLLFL 118 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + H + LV ++ T+PIG E N F + F+ L+ P + + N Sbjct: 119 TFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLAITKTGGLIFLNGFMLALPLITLLLTLN 178 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLG 224 +++GLLN++ PQ+ I+ I P + +G Sbjct: 179 LALGLLNRMAPQLSIFVIGFPLTLTVG 205 >gi|161503485|ref|YP_001570597.1| hypothetical protein SARI_01561 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864832|gb|ABX21455.1| hypothetical protein SARI_01561 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 259 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ + +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDRQFLKYIQVEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|283836565|ref|ZP_06356306.1| type III secretion apparatus protein SpaR/YscT/HrcT [Citrobacter youngae ATCC 29220] gi|291067494|gb|EFE05603.1| type III secretion apparatus protein SpaR/YscT/HrcT [Citrobacter youngae ATCC 29220] Length = 264 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 21/217 (9%) Query: 12 LFLIVCRVGSCIMLLPGL-SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFVNRAYY 69 LF+ V R +++P L S + +R + +I LP L + + L Q V Y+ Sbjct: 15 LFIAVLRPLGIFIIMPLLTSKNLAGTMIRNSIIILITIPALPGLKENVFLSQPHVIDFYF 74 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMG--ISDSLAETPLNSL 127 + E+F+G + G + + + G ++ T G +SMG + +LAE+ ++L Sbjct: 75 FLALSREVFIGVLIGFVAAIPFWAIDSAGFLLDTMRG----SSMGNIYNPTLAES--STL 128 Query: 128 IGIIGLLALWVIDF----HHQVFYALVKSYGTIPIGQELNFGNIFSSFV----NMLQTTF 179 +G+ VI F +Q+ L +SY P G+ ++F FV NML F Sbjct: 129 LGVFFSQLFTVIFFVCGGMNQLITTLYQSYVLFPPGESISFNRHLLDFVVQQWNML---F 185 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 ++ L S P ++ ++ +GLLN+ Q+ ++F++ Sbjct: 186 VLFLHFSIPAAAVMLLTDVGMGLLNRSAQQLNVFFLA 222 >gi|168233616|ref|ZP_02658674.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471729|ref|ZP_03077713.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458093|gb|EDX46932.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332340|gb|EDZ19104.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 259 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCVSFSVPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|197249409|ref|YP_002146622.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|238913176|ref|ZP_04657013.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197213112|gb|ACH50509.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 259 Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCVSFSVPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|256017857|ref|ZP_05431722.1| flagellar biosynthesis protein FliR [Shigella sp. D9] gi|293446330|ref|ZP_06662752.1| flagellar biosynthetic protein FliR [Escherichia coli B088] gi|332278883|ref|ZP_08391296.1| flagellar biosynthetic protein FliR [Shigella sp. D9] gi|291323160|gb|EFE62588.1| flagellar biosynthetic protein FliR [Escherichia coli B088] gi|332101235|gb|EGJ04581.1| flagellar biosynthetic protein FliR [Shigella sp. D9] Length = 261 Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + RV + I P LS +P +V+L AM + + P L D+ F A + L Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-PANDVPVFSFFALW--L 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + ++ +G G ++ ++ G +I +GL+ T + + L L ++ ++ Sbjct: 74 AVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLT 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL + H + LV ++ T+PIG E N F + F+ L L+ P + Sbjct: 134 LLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ I+ I P + +G Sbjct: 194 LLTLNLALGLLNRMAPQLSIFVIGFPLTLTVG 225 >gi|152965634|ref|YP_001361418.1| flagellar biosynthetic protein FliR [Kineococcus radiotolerans SRS30216] gi|151360151|gb|ABS03154.1| flagellar biosynthetic protein FliR [Kineococcus radiotolerans SRS30216] Length = 274 Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust. Identities = 16/80 (20%), Positives = 41/80 (51%) Query: 142 HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201 H + ++SY +P+ L+ G + F + + +++++P + + +I +G Sbjct: 142 HLLILQGFLRSYDVLPLDAGLDTGTVARVFTEGVAQLVISAVQIAAPLIAVLFLTDIGLG 201 Query: 202 LLNKLVPQIPIYFISTPYLI 221 LL+++ P + ++ +S P I Sbjct: 202 LLSRVAPALNVFAMSFPVKI 221 >gi|238764054|ref|ZP_04625009.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia kristensenii ATCC 33638] gi|238697725|gb|EEP90487.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia kristensenii ATCC 33638] Length = 260 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 15/162 (9%) Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQT----SMGISDSLA 120 N + + L+ +EL +G + G + + + G +I T G + T SMG+ S+ Sbjct: 64 NLSGWFWLLCIELIIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIF 123 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ++ ++ L++ + V AL SY +P G + S+ + LQ+ + Sbjct: 124 GVLFTQILTVLFLIS----GGFNLVLLALYGSYDILPAGSGIQ---PTSAMLQFLQSEWR 176 Query: 181 IMLRL----SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 +M L + P + ++ ++S+GL+N+ Q+ ++F++ P Sbjct: 177 LMYELCLSFALPAMLVMVLADLSLGLINRSSQQLNVFFLAMP 218 >gi|332294883|ref|YP_004436806.1| flagellar biosynthetic protein FliR [Thermodesulfobium narugense DSM 14796] gi|332177986|gb|AEE13675.1| flagellar biosynthetic protein FliR [Thermodesulfobium narugense DSM 14796] Length = 256 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 67/141 (47%), Gaps = 14/141 (9%) Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG--- 132 E+ +G G + ++ L+F G ++Q+ MG++ + + + S + G Sbjct: 74 EVLIGVFMGFIFYLFLWILEFAGGF------FDMQSGMGMA-AFYDPQMGSETSVYGNFF 126 Query: 133 ----LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 LL + +FH+ + V+SY +P+GQ + G ++ ++ L T L ++ P Sbjct: 127 TLLGLLIFLIGNFHYILLKIFVESYYVLPVGQFIKSGPSYNLLMSTLIWTMTAGLEMALP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQ 209 + + ++S+G++ + PQ Sbjct: 187 VVLILFLIDLSLGIMARTAPQ 207 >gi|323223785|gb|EGA08089.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 183 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 74 LYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 133 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 134 QQLNVFFFSMP 144 >gi|315301908|ref|ZP_07872921.1| flagellar biosynthesis protein FliR [Listeria ivanovii FSL F6-596] gi|313629724|gb|EFR97844.1| flagellar biosynthesis protein FliR [Listeria ivanovii FSL F6-596] Length = 253 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +++ ++ CR+ S + P L +IP V++ F MA SI P + +D+ Sbjct: 7 LAVVIVFCRIASFLFFFPLLKGRHIPNSVKVIFGMAISI---P-VATVVDVSGITTLPDL 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN----LQTSMGISDSLAETPLN 125 V E+ G L+ + + + G +I +G + + S G +S+ L+ Sbjct: 63 LLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILD 122 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSY---GTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 + +I L+L +D + +FY L+KS+ ++ I E F ++ F+ L Sbjct: 123 TFFVVI-FLSLQGLD--YLIFY-LMKSFEFTASVSILFEKGFIDL---FLGTLGFALASA 175 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213 + ++ P + + NI + ++K PQI I+ Sbjct: 176 VSIALPIMGSIFIVNIILAFISKSAPQINIF 206 >gi|307131232|ref|YP_003883248.1| type III secretion inner membrane protein [Dickeya dadantii 3937] gi|306528761|gb|ADM98691.1| type III secretion inner membrane protein [Dickeya dadantii 3937] Length = 267 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 19/237 (8%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 +L L V R+ C+ L+P S + I +R A+A ++V + + L + Sbjct: 16 ALTLGVARLYPCLFLVPLFSFTIIKGMLRNAVAIALALVPAGAIQQQM-LTTTITWPMLP 74 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL----NLQTSMGISDSLAETPLNS 126 L++ EL +G + G+++ + + G++ G L ++G SD+ TPL Sbjct: 75 GLLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALG-SDA---TPLGH 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALV-KSYGTIPIGQELNF-----GNIFSSFVNMLQTTFM 180 ++ + ++ L +I F L+ SY P L+F F +++++L+ TF Sbjct: 131 MMKELFMMML-IITIGFPGFTQLLWDSYRLWP---ALDFLPPLSEQGFHTYLDLLKDTFQ 186 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 M+ + P + ++ SI +L+ PQ+ +Y +STP G F L + ++ + Sbjct: 187 HMIVYAGPLVALLLLLEFSIAILSLYSPQLQVYVLSTPAKCLAGMAFFVLYMPVLQF 243 >gi|16760490|ref|NP_456107.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141750|ref|NP_805092.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213426014|ref|ZP_03358764.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581365|ref|ZP_03363191.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613055|ref|ZP_03370881.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647289|ref|ZP_03377342.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854182|ref|ZP_03382714.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289805083|ref|ZP_06535712.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289827204|ref|ZP_06545927.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25352861|pir||AG0696 probable type III secretion protein ssaT [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502786|emb|CAD01944.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137378|gb|AAO68941.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 259 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|168822291|ref|ZP_02834291.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224584068|ref|YP_002637866.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|205341312|gb|EDZ28076.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224468595|gb|ACN46425.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320086101|emb|CBY95875.1| Secretion system apparatus protein ssaT [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 259 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|322615095|gb|EFY12018.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619936|gb|EFY16809.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622248|gb|EFY19093.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627770|gb|EFY24560.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632885|gb|EFY29629.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636624|gb|EFY33327.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641183|gb|EFY37825.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644882|gb|EFY41415.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650282|gb|EFY46696.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655855|gb|EFY52157.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660181|gb|EFY56420.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665253|gb|EFY61441.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669510|gb|EFY65658.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673436|gb|EFY69538.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677364|gb|EFY73428.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679973|gb|EFY76012.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687445|gb|EFY83417.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194102|gb|EFZ79301.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198583|gb|EFZ83684.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202909|gb|EFZ87944.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208629|gb|EFZ93567.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211165|gb|EFZ96012.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217606|gb|EGA02321.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218955|gb|EGA03465.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229408|gb|EGA13531.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232631|gb|EGA16727.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240331|gb|EGA24375.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242680|gb|EGA26701.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245891|gb|EGA29879.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252455|gb|EGA36302.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256474|gb|EGA40207.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260037|gb|EGA43662.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267200|gb|EGA50685.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271477|gb|EGA54898.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 259 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|251789491|ref|YP_003004212.1| type III secretion protein SpaR/YscT/HrcT [Dickeya zeae Ech1591] gi|247538112|gb|ACT06733.1| type III secretion protein SpaR/YscT/HrcT [Dickeya zeae Ech1591] Length = 267 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 108/234 (46%), Gaps = 13/234 (5%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 +L L V R+ C+ L+P S S I +R A+A ++V + + L + Sbjct: 16 ALTLGVARLYPCLFLVPLFSFSIIKGMLRNAVAIAIALVPAGAIQQQM-LTTTITWPMLP 74 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL----NLQTSMGISDSLAETPLNS 126 L++ EL +G + G+++ + + G++ G L ++G SD+ TPL Sbjct: 75 ALLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALG-SDA---TPLGH 130 Query: 127 LIG-IIGLLALWVIDFH--HQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 ++ + +L + I F Q+ + + + + L+ F +++++L+ TF M+ Sbjct: 131 MLKELFTMLLVLTIGFSGFTQLLWDSYRLWPALDFLPPLSEQG-FHTYLDLLKETFQHMI 189 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + P + ++ SI +L+ PQ+ +Y +STP G F L + ++ + Sbjct: 190 VYAGPLVALLLLLEFSIAILSLYSPQLQVYVLSTPAKCLAGMAFFVLYMPVLQF 243 >gi|157371199|ref|YP_001479188.1| flagellar biosynthesis protein FliR [Serratia proteamaculans 568] gi|157322963|gb|ABV42060.1| flagellar biosynthetic protein FliR [Serratia proteamaculans 568] Length = 260 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 2/154 (1%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L ++ +G GL ++ ++ G VI +GL+ T S TP+ + + + Sbjct: 73 LAAQQILIGVALGLTMQFAFAAIRLAGEVIGMQMGLSFATFFDPSGG-PNTPVLARLLNL 131 Query: 132 GLLALWV-IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L++ + H + LV S+ T+PI E GN F + F+ + L+ P + Sbjct: 132 LAMLLFLSFNGHLWLISLLVDSFHTLPIQAEPLNGNGFLALTQAGSLIFINGMMLALPLI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + N+++GLLN++ PQ+ ++ I P + +G Sbjct: 192 CLLLTLNMALGLLNRMTPQLSVFVIGFPVTMTIG 225 >gi|16764771|ref|NP_460386.1| type III secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995055|ref|ZP_02576145.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|3024667|sp|P96068|SSAT_SALTY RecName: Full=Secretion system apparatus protein ssaT gi|1695195|emb|CAA68201.1| secretion system apparatus, SsaT [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419942|gb|AAL20345.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327199|gb|EDZ13963.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246627|emb|CBG24437.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993310|gb|ACY88195.1| type III secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157956|emb|CBW17451.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912406|dbj|BAJ36380.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129693|gb|ADX17123.1| type III secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988308|gb|AEF07291.1| type III secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 259 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|289433956|ref|YP_003463828.1| flagellar biosynthetic protein FliR [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170200|emb|CBH26740.1| flagellar biosynthetic protein FliR [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313639093|gb|EFS04069.1| flagellar biosynthesis protein FliR [Listeria seeligeri FSL S4-171] Length = 253 Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 18/211 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +++ ++ CR+ S + P L +IP V++ F MA SI P + +D+ Sbjct: 7 LAVVIVFCRIASFLFFFPLLKGRHIPNSVKVIFGMAISI---P-VATVVDVSGITTLPDL 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN----LQTSMGISDSLAETPLN 125 V E+ G L+ + + + G +I +G + + S G +S+ L+ Sbjct: 63 LLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILD 122 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSY---GTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 + +I L+L +D + +FY L+KS+ ++ I E F ++ F+ L Sbjct: 123 TFFVVI-FLSLQGLD--YLIFY-LMKSFEFTASVSILFEKGFIDL---FLGTLGFALASA 175 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213 + ++ P + + NI + ++K PQI I+ Sbjct: 176 VSIALPIMGSIFIVNIILAFISKSAPQINIF 206 >gi|56413608|ref|YP_150683.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168463169|ref|ZP_02697100.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197362532|ref|YP_002142169.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127865|gb|AAV77371.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|195634372|gb|EDX52724.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094009|emb|CAR59505.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 259 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 >gi|319795602|ref|YP_004157242.1| type III secretion protein spar/ysct/hrct [Variovorax paradoxus EPS] gi|315598065|gb|ADU39131.1| type III secretion protein SpaR/YscT/HrcT [Variovorax paradoxus EPS] Length = 260 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 148 ALVKSYGTIPIGQEL-NFGNIFSSF-VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNK 205 A++ SY P+G + G + F V T F+ +++L++P +F ++ + GL+ + Sbjct: 149 AVIDSYRLWPVGSFFPDAGLVLEQFAVRQGDTLFLWIVKLAAPIIFVLLLVELGTGLVGR 208 Query: 206 LVPQIPIYFISTP 218 + PQ+ ++ + P Sbjct: 209 VAPQLNVFVFAQP 221 >gi|167551610|ref|ZP_02345364.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442971|ref|YP_002040672.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401634|gb|ACF61856.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205323640|gb|EDZ11479.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 259 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 149 LVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 L +SY +P G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Sbjct: 150 LYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 Query: 208 PQIPIYFISTP 218 Q+ ++F S P Sbjct: 210 QQLNVFFFSMP 220 Searching..................................................done Results from round 2 >gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62] gi|254040188|gb|ACT56984.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62] Length = 248 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 248/248 (100%), Positives = 248/248 (100%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL Sbjct: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA Sbjct: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM Sbjct: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS Sbjct: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 Query: 241 HSFLYGFF 248 HSFLYGFF Sbjct: 241 HSFLYGFF 248 >gi|222147597|ref|YP_002548554.1| flagellar biosynthesis protein FliR [Agrobacterium vitis S4] gi|221734585|gb|ACM35548.1| flagellar biosynthetic protein FLIR [Agrobacterium vitis S4] Length = 250 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 156/244 (63%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+GSC M +PG + S IP Q+RL A+A S+ P +WDT+ Sbjct: 1 MITDPQGSVLALFLVFCRIGSCFMTMPGFASSRIPTQIRLLLAVAVSMACTPLVWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + + L+ E +G V GL+ R +TLGLQF G++++ IG N + + + A Sbjct: 61 KVSSGGSIFVALIFTETLIGAVFGLITRFFTLGLQFAGAILTMMIGFNSTATADVLEDGA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E + ++I GL+ L+++DFHH VF AL+ SY +P+G + + + + T+M Sbjct: 121 ENQMTNMISFCGLMMLFMMDFHHVVFRALIDSYTVMPMGGVPDTQKMLITLTDTASRTYM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +MLRLSSPF+ + ++FN+ +GL+NKL PQIP+Y+ISTPYLI G L + SI +++ QF+ Sbjct: 181 LMLRLSSPFIIYGLMFNLGVGLVNKLAPQIPVYYISTPYLITGGMLLVYWSIGVMMRQFA 240 Query: 241 HSFL 244 +F+ Sbjct: 241 DAFI 244 >gi|307318937|ref|ZP_07598368.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti AK83] gi|306895351|gb|EFN26106.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti AK83] Length = 250 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 102/243 (41%), Positives = 148/243 (60%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE +++LF CR+G C+M++PG S + +PMQ+RL A+A S+ +LP +W I Sbjct: 1 MITDPEGTVLALFAAFCRIGGCVMIMPGFSTARVPMQIRLFIAVALSMAILPIMWTDIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y LV E +G V GL+ R Y LGLQF G+ I+ +G + + + A Sbjct: 61 QVTGKGHDYLYLVATETAVGAVIGLVARYYVLGLQFAGTAITMLMGFGSPPAADVLEDTA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E L S+IG GL+ L+++DFHH +F A+ +SY +PIG + + N L TFM Sbjct: 121 ENQLTSMIGFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGTLITLTNSLGQTFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRL+SPF+ + ++FN++IG++NKL PQIP+YFIS PYLI G L L I ++ F+ Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA 240 Query: 241 HSF 243 F Sbjct: 241 DGF 243 >gi|150395511|ref|YP_001325978.1| flagellar biosynthesis protein FliR [Sinorhizobium medicae WSM419] gi|150027026|gb|ABR59143.1| flagellar biosynthetic protein FliR [Sinorhizobium medicae WSM419] Length = 250 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 101/243 (41%), Positives = 149/243 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE +++LF CR+G CIM++PG S + +PMQ+RL A+A S+ +LP +W I Sbjct: 1 MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y LV E +G V GL+ R Y LGLQF G+ ++ +G + + + + A Sbjct: 61 QVTGKGHDYLYLVATETAVGAVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E L SLI GL+ L+++DFHH +F A+ +SY +PIG + + + N L+ TFM Sbjct: 121 ENQLTSLISFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGMLITLTNSLEQTFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRL+SP + + ++FN++IG++NKL PQIP+YFIS PYLI G L L I ++ F+ Sbjct: 181 IMLRLASPLVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA 240 Query: 241 HSF 243 F Sbjct: 241 DGF 243 >gi|15964440|ref|NP_384793.1| flagellar biosynthesis protein FliR [Sinorhizobium meliloti 1021] gi|307311582|ref|ZP_07591223.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti BL225C] gi|15073617|emb|CAC45259.1| Probable flagellar biosynthetic transmembrane protein [Sinorhizobium meliloti 1021] gi|306899599|gb|EFN30228.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti BL225C] Length = 250 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 102/243 (41%), Positives = 149/243 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE ++++LF CR+G C+M++PG S + +PMQ+RL A+A S+ +LP +W I Sbjct: 1 MITDPEGMVLALFAAFCRIGGCVMIMPGFSTARVPMQIRLFIAVALSMAILPIMWTDIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y LV E +G V GL+ R Y LGLQF G+ I+ +G + + + A Sbjct: 61 QVTGKGHDYLYLVATETAIGAVIGLVARYYVLGLQFAGTAITMLMGFGSPPAADVLEDTA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E L S+IG GL+ L+++DFHH +F A+ +SY +PIG + + N L TFM Sbjct: 121 ENQLTSMIGFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGTLITLTNSLGQTFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRL+SPF+ + ++FN++IG++NKL PQIP+YFIS PYLI G L L I ++ F+ Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA 240 Query: 241 HSF 243 F Sbjct: 241 DGF 243 >gi|209547954|ref|YP_002279871.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533710|gb|ACI53645.1| type III secretion system inner membrane R protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 250 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 153/243 (62%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A+A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L++ E +G ++G+L R+YTLG+QF ++I+T +G S I + Sbjct: 61 AVHTGSGTYIGLIVSESLIGVMYGMLARIYTLGMQFAATIIATMVGYTQPGSADIIEDTP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E+ L+ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T Sbjct: 121 ESSLSGFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFSDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G + SI +V QF Sbjct: 181 IMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLVYFSIAALVSQFG 240 Query: 241 HSF 243 SF Sbjct: 241 QSF 243 >gi|218463239|ref|ZP_03503330.1| flagellar biosynthesis protein FliR [Rhizobium etli Kim 5] Length = 250 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 152/247 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI +LP LWDT+ Sbjct: 1 MISDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVLPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S +++ Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVTEDSP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L++ I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T Sbjct: 121 ETSLSAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G +S+ +V QF Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLFYVSVAALVSQFG 240 Query: 241 HSFLYGF 247 +F + Sbjct: 241 QAFSSIY 247 >gi|241203132|ref|YP_002974228.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857022|gb|ACS54689.1| type III secretion system inner membrane R protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 250 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 150/243 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPDQLRVFIAGALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S I + Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADILEDTP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L+ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T Sbjct: 121 ETSLSGFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G + SI +V QF Sbjct: 181 IMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLIYFSIAAMVSQFG 240 Query: 241 HSF 243 SF Sbjct: 241 QSF 243 >gi|86356338|ref|YP_468230.1| flagellar biosynthesis protein FliR [Rhizobium etli CFN 42] gi|86280440|gb|ABC89503.1| flagellar byosinthesis transmembrane protein [Rhizobium etli CFN 42] Length = 250 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 153/247 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C+++LPG S + +P Q+R+ A+A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLVLPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 A Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + + Sbjct: 61 AVHTGSATYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDSP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L + I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T Sbjct: 121 ETSLTAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G +S+ +V QF Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLFYVSVAALVSQFG 240 Query: 241 HSFLYGF 247 +F + Sbjct: 241 QAFSSIY 247 >gi|218681681|ref|ZP_03529482.1| flagellar biosynthesis protein FliR [Rhizobium etli CIAT 894] Length = 250 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 153/243 (62%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C+++LPG S + +P Q+R+ A A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLVLPGFSSARVPEQLRVFIAGALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++GLL R+YTLG+QF ++++T +G S I + Sbjct: 61 AVHTGSPTYIGLIFSESLVGVMYGLLARIYTLGMQFAATILATMVGYTQPGSADIIEDTP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E+ L+ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T Sbjct: 121 ESSLSGFITFAGIMILFMMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRL+SPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G + SI +V QFS Sbjct: 181 IMLRLASPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLIYFSIAAMVSQFS 240 Query: 241 HSF 243 SF Sbjct: 241 QSF 243 >gi|222084893|ref|YP_002543422.1| flagellar byosinthesis transmembrane protein [Agrobacterium radiobacter K84] gi|221722341|gb|ACM25497.1| flagellar byosinthesis transmembrane protein [Agrobacterium radiobacter K84] Length = 250 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 117/247 (47%), Positives = 157/247 (63%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL CR+G C+M+LPG S +P Q+RL A A S+ +LP LW+TI Sbjct: 1 MISDPQGTILALFLAFCRIGGCVMVLPGFSSGRVPPQIRLLLAAALSMAILPLLWNTIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + A Y L+ E +G ++G++ R+YTLGLQF G+VIS IG N M + + Sbjct: 61 EVSKSSATYISLIFTETVIGLMYGMMARLYTLGLQFAGTVISMLIGFNAPGGMDVIEDSN 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L SLI GL+ L+V+DFHH V ALV+SY IP G ++ S + L TT Sbjct: 121 ETSLTSLISFCGLMILFVLDFHHYVLQALVESYSVIPFGGHVDVRASLISVTDTLATTTF 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRL+SPFL + ++F ISIG +NKL PQIPIYFISTPYL+ G L LSI ++ QFS Sbjct: 181 IMLRLASPFLLYGLMFQISIGFINKLAPQIPIYFISTPYLLMGGLFMLYLSIAAMISQFS 240 Query: 241 HSFLYGF 247 +FL F Sbjct: 241 GAFLTVF 247 >gi|190890390|ref|YP_001976932.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] gi|190695669|gb|ACE89754.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] Length = 250 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 102/243 (41%), Positives = 149/243 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI L+P LWDT+ Sbjct: 1 MIADPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIALMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + + Sbjct: 61 AVHTGAGTYIGLIFSESLVGLMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDAP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L+ I G++ L+++DFHH VF ALV SY T+P G SF + L+ T Sbjct: 121 ETSLSGFITFAGIMILFIMDFHHIVFRALVDSYTTMPFGGVTQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G +S+ +V QF Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLFYVSVAALVSQFG 240 Query: 241 HSF 243 +F Sbjct: 241 QAF 243 >gi|218662875|ref|ZP_03518805.1| flagellar biosynthesis protein FliR [Rhizobium etli IE4771] Length = 250 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 151/247 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+ Sbjct: 1 MISDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + + Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDSP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L++ I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T Sbjct: 121 ETSLSAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G +S+ +V QF Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLFYVSVAALVSQFG 240 Query: 241 HSFLYGF 247 +F + Sbjct: 241 QAFSSIY 247 >gi|315122292|ref|YP_004062781.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495694|gb|ADR52293.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 247 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 190/243 (78%), Positives = 216/243 (88%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M SPEII+MSLFLI CR+GSCIM LPG SM Y+PMQVR F+M FSIVLLPFLWDTIDL Sbjct: 1 MIASPEIIIMSLFLICCRIGSCIMFLPGFSMPYVPMQVRFFFSMTFSIVLLPFLWDTIDL 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q F +RAYY KLV+VELFLGCVHG+L+R+YT GLQF GSVISTAIGLNLQ+SMGISDS+ Sbjct: 61 QIFADRAYYLKLVIVELFLGCVHGVLVRIYTFGLQFMGSVISTAIGLNLQSSMGISDSIP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET +SLIG IGLLALW+IDFHHQ+FYALVKSYGT PIG+EL+F NIFSS +N+LQ TF+ Sbjct: 121 ETSFSSLIGTIGLLALWIIDFHHQIFYALVKSYGTTPIGKELHFDNIFSSLINILQMTFI 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFLFFY+VFNISIG LNK+VPQIP+YFISTPY++GLG LFL SIE+I+YQF Sbjct: 181 IMLRLSSPFLFFYVVFNISIGFLNKIVPQIPVYFISTPYMVGLGFLFLYSSIEMIIYQFI 240 Query: 241 HSF 243 HSF Sbjct: 241 HSF 243 >gi|116250508|ref|YP_766346.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. viciae 3841] gi|115255156|emb|CAK06230.1| putative flagellar biosynthetic protein FliR [Rhizobium leguminosarum bv. viciae 3841] Length = 250 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 150/243 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPQQLRVFIAGALSIAVMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF S+ + +G S I + Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAASITAMMVGYTQPGSADILEDTP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET L++ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T Sbjct: 121 ETSLSAFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTY 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G + SI +V QF Sbjct: 181 IMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLIYFSIAAMVSQFG 240 Query: 241 HSF 243 SF Sbjct: 241 QSF 243 >gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium ljungdahlii DSM 13528] gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium ljungdahlii DSM 13528] Length = 606 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 104/235 (44%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +L L+ R+ S +L+P S IP V++ + + +L+P + D + + N + Sbjct: 7 FTALILVSIRIFSFFILVPIFFPSGIPNVVKVGLTVVMAYILMPGI-DYASISSIDNTMF 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + E+ G G L + ++ G+++ +G + + + + T + L+ Sbjct: 66 FVMNCLNEVAAGLTLGFLTSLCFSMVRIAGNLMDMQMGFAMVSMFDPTSNSNTTLIERLL 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L+ +++D HH + +L++S+ I +G + F I +++ P Sbjct: 126 YWFSLVIFFIVDGHHMLIKSLIQSFSVIKLGSFFLNQASINIIFKAFIEYFGIAIQIGIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + ++++ L+ + VPQ+ I + P + +G C ++ I + H F Sbjct: 186 IVLILLFTDLTMSLIARTVPQLNIMILGLPVKVLIGFASFCFALPIFLKLIEHLF 240 >gi|255305289|ref|ZP_05349461.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile ATCC 43255] Length = 604 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 103/232 (44%), Gaps = 2/232 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + + R+ + L L + P + FA+ SI++ + N N ++ Sbjct: 1 MIFVFIRIVAFFGTLRILFSAGTPALFKSLFAIIISILISSTM-QIEYATNIDNIVLFTL 59 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E G + G + + ++ GS++ +GL++ + T +N+L+ Sbjct: 60 YGINETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSMTQTTLINNLMNWT 119 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + +D HH + + S+ IPIG+ NI +N+ F+ +++ P + Sbjct: 120 ALMIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNI-DYIINIFVQCFLTGFKIAIPIVL 178 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ + +GL+++ VPQ+ + I P I +G +SI +IV Q SH Sbjct: 179 CLLMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQISHLL 230 >gi|325291970|ref|YP_004277834.1| flagellar biosynthesis protein FliR [Agrobacterium sp. H13-3] gi|325059823|gb|ADY63514.1| flagellar biosynthesis protein FliR [Agrobacterium sp. H13-3] Length = 251 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 155/244 (63%), Gaps = 1/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL +CR+G+C M +PG S S I Q+R+ +A S+ LLP LWDTI Sbjct: 1 MITDPQGTIIALFLAICRIGACFMTMPGFSSSRISPQIRILLCVAVSMALLPVLWDTIYP 60 Query: 61 QNF-VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + ++ L+ E+ +G ++GL+ R YTLG QFTG++I +IGL+ + + Sbjct: 61 KVSGASQGAVVGLIFTEIVIGAMYGLIARFYTLGFQFTGALIGASIGLSAPGGADAVEDV 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 E +++ I GL+ L+++DFHH V ALV SY T P+G ++ + + + L+ +F Sbjct: 121 QENQISNFITFGGLMVLFILDFHHIVLRALVDSYATTPVGALISGQKMLITLTDTLRASF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 IMLRL+SPF+ + ++FN+++GL+NKL PQIP+YFISTP+++ G L LSI ++ QF Sbjct: 181 SIMLRLASPFVIYGLMFNVAVGLINKLAPQIPVYFISTPFVLAGGIFMLYLSIAALIRQF 240 Query: 240 SHSF 243 F Sbjct: 241 VDGF 244 >gi|126697834|ref|YP_001086731.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile 630] gi|115249271|emb|CAJ67084.1| Bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile] Length = 604 Score = 172 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 103/232 (44%), Gaps = 2/232 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + + R+ + L L + P + FA+ SI++ + N N ++ Sbjct: 1 MIFVFIRIVAFFGTLRILFPAGTPALFKSLFAIIISILISSTM-QIEYATNIDNIVLFTL 59 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E G + G + + ++ GS++ +GL++ + T +++L+ Sbjct: 60 YGVNETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSMTQTTLIDNLMNWT 119 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + +D HH + + S+ IPIG+ NI +N+ F+ +++ P + Sbjct: 120 ALMIFFSMDGHHVLIRGIRYSFELIPIGKPFVDNNI-DYIINIFVQCFLTGFKIAIPIVL 178 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ + +GL+++ VPQ+ + + P I +G +SI +IV Q SH Sbjct: 179 CLLMADFILGLISRSVPQLNVMIVGMPLKILVGIALFIISIPLIVNQISHLL 230 >gi|302874605|ref|YP_003843238.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans 743B] gi|307690784|ref|ZP_07633230.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium cellulovorans 743B] gi|302577462|gb|ADL51474.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans 743B] Length = 607 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 102/238 (42%), Gaps = 1/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++L LI R+ + PG+ + P ++ + + ++LP + + Sbjct: 6 FFVALILITLRLAGMFIAAPGILPTGTPNILKAVLILILAYMVLPVI-NYSGASALTEPT 64 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + E G G +I ++ + + GS+I +G ++ T + + T L Sbjct: 65 KLIIQCLNEFSTGLAVGFIINLFFIAARIAGSIIDMQVGFSMVTLFDPTANSTATYLERF 124 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 +I ++ ++ID HH V A + +Y + IG + + + I ++++ Sbjct: 125 FNLIAIMIFFIIDGHHYVIKAFIATYDKVSIGVFFLDQGTLQEILKLFGHFYAIGVKIAL 184 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + +V ++ +G+L++ +PQ+ I + P + +G L +S V ++SF Sbjct: 185 PIILVILVADVLMGVLSRTMPQLNIMILGMPVKLLIGFGILAVSAPFFVRLITNSFQE 242 >gi|33601553|ref|NP_889113.1| flagellar biosynthetic protein [Bordetella bronchiseptica RB50] gi|33575989|emb|CAE33069.1| flagellar biosynthetic protein [Bordetella bronchiseptica RB50] Length = 262 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + R+ + + P S S IP +V++ A +I + P + + Sbjct: 11 GWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAPAIGPMPAVPPSSYA 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G GL +RV +Q G + +GL+ + + L+ Sbjct: 71 GLF--LLGQQVLIGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L I+ +L +D H V ALV+S+ T+P+ + N + T F+ L L+ Sbjct: 129 LFNIVAMLVFLALDGHLLVLGALVRSFDTLPVAVGVLDRNGWGILAEWGTTIFVSGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ PQ+ ++ I P + +G + L + + F G Sbjct: 189 LPLICALLTINLAMGILNRAAPQLSVFAIGFPVSLIVGLVLLAIVLPHSGPFLERLFEQG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|33592490|ref|NP_880134.1| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I] gi|33572136|emb|CAE41679.1| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I] gi|332381908|gb|AEE66755.1| flagellar biosynthetic protein FliR [Bordetella pertussis CS] Length = 262 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + R+ + + P S S IP +V++ A +I + P + + Sbjct: 11 GWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAPAIGPMPAVPPSSYA 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G GL +RV +Q G + +GL+ + + L+ Sbjct: 71 GLF--LLSQQVLIGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L I+ +L +D H V ALV+S+ T+P+ + N + T F+ L L+ Sbjct: 129 LFNIVAMLVFLALDGHLLVLGALVRSFDTLPVAVGVLDRNGWGILAEWGTTIFVSGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ PQ+ ++ I P + +G + L + + F G Sbjct: 189 LPLICALLTINLAMGILNRAAPQLSVFAIGFPVSLIVGLVLLAIVLPHSGPFLERLFEQG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|15895417|ref|NP_348766.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acetobutylicum ATCC 824] gi|15025140|gb|AAK80106.1|AE007715_11 FliR/FlhB fusion protein [Clostridium acetobutylicum ATCC 824] gi|325509563|gb|ADZ21199.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acetobutylicum EA 2018] Length = 610 Score = 171 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 105/235 (44%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 SLF++ RV + + L + +P V++ ++ S ++P++ + + N Sbjct: 6 FTSLFMVFLRVFAFFIALQVMFPKSLPNTVKVMLSLCISFFVMPYI-NLSQVSALNNGFL 64 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y+ + E+ G + G + LG++ G + IG ++ T+ S + + + Sbjct: 65 YTWQCICEILTGLILGFFANLMFLGVKIGGQFLDFQIGYSMMTAYDPSSESNASLIERFL 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + ++ + I H V LV S+ ++ +G + N+ F+I +++ P Sbjct: 125 NMFSVVLFFSIGGHEVVIKELVSSFNSVKLGTFVINDQSVMVAFNVFVQFFVIGFKIALP 184 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ +I +GL+++ VPQ+ + + P I LG L + + +I SF Sbjct: 185 VVLVLLITDIVMGLMSRTVPQLNVMILGMPIKILLGLTCLMIILPLIAKVLITSF 239 >gi|227820883|ref|YP_002824853.1| flagellar biosynthesis protein FliR [Sinorhizobium fredii NGR234] gi|227339882|gb|ACP24100.1| flagellar biosynthesis protein FliR [Sinorhizobium fredii NGR234] Length = 250 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 101/243 (41%), Positives = 149/243 (61%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE +++LF CR+G CIM++PG S + +PMQVRL A+A S+ +LP +W I Sbjct: 1 MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQVRLFIAVALSMAILPIMWTDIYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y L+ E +G V GL+ R Y LGLQF G+ I+ IG N + + + A Sbjct: 61 QVAGKGHTYIYLIATESVIGAVIGLVARYYVLGLQFAGTAITMLIGFNPPPATDVLEETA 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E L S+I GL+ L+++DFHH +F A+ +SY +PIG + + + N L TF+ Sbjct: 121 ENQLTSMISFAGLMLLFMLDFHHVIFEAIAQSYRVMPIGIGFDPQGMLITLTNSLGQTFL 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 IMLRL+SPF+ + ++FN++IG++N+L PQ+P+YFIS PYLI G L L I ++ F+ Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNRLAPQVPVYFISQPYLILGGLFLLYLGIAAMLRLFA 240 Query: 241 HSF 243 F Sbjct: 241 DGF 243 >gi|254973928|ref|ZP_05270400.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-66c26] gi|255091314|ref|ZP_05320792.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile CIP 107932] gi|255312972|ref|ZP_05354555.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-76w55] gi|255515731|ref|ZP_05383407.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-97b34] gi|255648825|ref|ZP_05395727.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-37x79] gi|260682043|ref|YP_003213328.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile CD196] gi|260685641|ref|YP_003216774.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile R20291] gi|306518939|ref|ZP_07405286.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-32g58] gi|260208206|emb|CBA60557.1| flagellar export protein [Clostridium difficile CD196] gi|260211657|emb|CBE01921.1| flagellar export protein [Clostridium difficile R20291] Length = 604 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 102/232 (43%), Gaps = 2/232 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + + R+ + L L + P + FA+ SI++ + N N ++ Sbjct: 1 MIFVFIRIVAFFGTLRILFPAGTPALFKSLFAIIISILISSTM-QIEYATNIDNIVLFTL 59 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E G + G + + ++ GS++ +GL++ + T +++L+ Sbjct: 60 YGINETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSMTQTTLIDNLMNWT 119 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + + +D HH + + S+ IPIG+ NI +N+ F+ +++ P + Sbjct: 120 ARMIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNI-DYIINIFVQCFLTGFKIAIPIVL 178 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ + +GL+++ VPQ+ + I P I +G +SI +IV Q SH Sbjct: 179 CLLMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQISHLL 230 >gi|186477690|ref|YP_001859160.1| flagellar biosynthetic protein FliR [Burkholderia phymatum STM815] gi|184194149|gb|ACC72114.1| flagellar biosynthetic protein FliR [Burkholderia phymatum STM815] Length = 260 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 107/240 (44%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+ + + P +P +V++ A ++++ P + F + Sbjct: 11 VWLTAFLWPFVRILALMATAPAFGDKSLPNRVKIGLAGFVTLIVAPTIGALPSATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ +Q G +I ++GL T + + ++ Sbjct: 71 GIW--IIVNQFLIGAALGFTMQIVFGAVQAAGDIIGMSMGLGFATFFDPHAAGSTDVMSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + +I +L +D H QV ALV+++ +P+ + N + V T L LS Sbjct: 129 YVYMIAILTFLALDGHLQVLSALVQTFQALPVSANVLGANGWRVLVGWGSTVVSAGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQ+ ++ + P + G L + L + ++ F+ F G Sbjct: 189 LPIVTALLITNLALGILNRAAPQVGVFQVGLPVTVITGLLLIQLMLPNMMPFFARVFESG 248 >gi|163856446|ref|YP_001630744.1| flagellar biosynthesis protein FliR [Bordetella petrii DSM 12804] gi|163260174|emb|CAP42476.1| flagellar biosynthesis protein FliR [Bordetella petrii] Length = 262 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 2/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ R+ + + P S S IP+++++ A ++ + P L + Sbjct: 10 DAWLLQFLWPFVRMLALVGSAPLFSESTIPIRIKVALAFMLTVAVAPGLEPPPAIPPGSY 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + L+ ++ +G G +R+ +Q G + +GL+ + S L+ Sbjct: 70 AGLW--LLGQQVLIGIAMGFTMRIVFAAVQTAGEFVGLQMGLSFASFFDPSTGANTAVLS 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ I+ +L +D H V ALV+S+ +P+ Q N + V QT F+ L L Sbjct: 128 RLLNIVAMLVFLALDGHLLVLAALVRSFDVLPLTQLTLDPNGWGILVQWGQTIFVSGLLL 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P + + N+++G+LN+ PQ+ ++ + P + G L L + Sbjct: 188 ALPLICALLTINLAMGILNRAAPQLSVFAVGFPVSLITGLLLLAAVLPHAAPFLEGLMRD 247 Query: 246 GF 247 G Sbjct: 248 GL 249 >gi|86573910|gb|ABD08467.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris HaA2] Length = 283 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + L+ RVG+ +MLLP L S IP +++L A+ ++++LP + + + + Sbjct: 41 AAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQV-DMSSLTPL 99 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L++ E+ +G V G RV LQ GSVI+ +GL T++ + + + + Sbjct: 100 LVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLT 159 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I+G+ L+ D HH V AL SY G+ LN G++ + +F I ++L++PF Sbjct: 160 ILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAASFKIGMQLAAPF 219 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L F +VFNI +G+L +L+PQ+ +YF+ P I +G + + ++ F F Sbjct: 220 LVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGTFLAYF 273 >gi|317406212|gb|EFV86460.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans C54] Length = 262 Score = 167 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + R+ + + P S S +P++V++ A ++ + P L + Sbjct: 11 GWIGQFLWPFVRILALVGTAPLFSESTVPVKVKIGLAFVLAVAVSPALDPAPPIAPGSFA 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +VM ++ +G G +R+ +Q G + +GL+ + S L+ Sbjct: 71 GLW--MVMQQVLIGIAMGFTMRLVFAAVQTAGEFVGLQMGLSFASFFDPSTGANTAVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L I+ +L +D H V ALV+S+ T+P+ N + V +T F+ L L+ Sbjct: 129 LFNIVAMLTFLALDGHLLVLAALVRSFDTLPVAAIQLHQNGWGVVVEWGKTVFVSGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ PQ+ ++ + P + +G + L + + F G Sbjct: 189 LPLICALLTINLAMGILNRAAPQLSVFSVGFPVSLIVGVVLLTVVLPNSGPFLESLFESG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|253573536|ref|ZP_04850879.1| flagellar biosynthetic protein FliR [Paenibacillus sp. oral taxon 786 str. D14] gi|251847064|gb|EES75069.1| flagellar biosynthetic protein FliR [Paenibacillus sp. oral taxon 786 str. D14] Length = 262 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 7/240 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI CR+ + ++ P S +P ++ FA ++V+L + Q+ N Y Sbjct: 11 FMLIFCRMTAFFVVSPIFSSRSVPNTFKVGFAGIIAVVILLTIGPN---QSIPNDLGYIL 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ E+ +G + G + + +Q GS I IG + + + L +L II Sbjct: 68 VIIREVLVGLLMGYVANLIFSVIQMAGSFIDIQIGFGIANVIDPMTGASAPVLGNLKYII 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIG----QELNFGNIFSSFVNMLQTTFMIMLRLSS 187 L ++ HH + A+++SY +P+ Q++ GN+ V FM+ ++S+ Sbjct: 128 ATLVFLSMNGHHYLLDAVIRSYNWVPLSNQVFQQIYNGNLSEFLVQTFSQAFMLAFQMSA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + V ++++G L + PQ I+ I P I +G L L + + + F F F Sbjct: 188 PLVVALFVTDVALGFLARTAPQFNIFVIGIPVKIIVGLLVLLVLVPGFIVAFQALFEVLF 247 >gi|293605016|ref|ZP_06687411.1| flagellar biosynthetic protein FliR [Achromobacter piechaudii ATCC 43553] gi|292816585|gb|EFF75671.1| flagellar biosynthetic protein FliR [Achromobacter piechaudii ATCC 43553] Length = 262 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 101/241 (41%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + R+ + + P S S IP++V++ + ++ + P L + Sbjct: 11 GWIGQFLWPFVRILALVGTAPLFSESAIPVKVKVGLSFVLAVAVSPALDPMPPIAPGSYA 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +VM ++ +G G +R+ +Q G + +GL+ + S L+ Sbjct: 71 GLW--MVMQQVLIGIAMGFTMRIVFAAVQTAGEFVGLQMGLSFASFFDPSSGANTAVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L ++ +L +D H V ALV+S+ T+P+ N + V +T F+ L L+ Sbjct: 129 LFNMVAMLTFLALDGHLLVLAALVRSFDTLPVAAIQLHQNGWGVVVEWGKTVFVSGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ Q+ ++ + P + +G L + + F G Sbjct: 189 LPLICALLTINLAMGILNRAAQQLSVFSVGFPVTLIIGVTVLTVVLPHAGPFLETLFESG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|82702486|ref|YP_412052.1| flagellar biosynthetic protein FliR [Nitrosospira multiformis ATCC 25196] gi|82410551|gb|ABB74660.1| flagellar biosynthetic protein FliR [Nitrosospira multiformis ATCC 25196] Length = 260 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 100/246 (40%), Gaps = 2/246 (0%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 ++ ++S F R+ + + + P L +P++V++ + ++V+ P L ++ Sbjct: 6 SVDLNAWLISFFWPAARILALLSVAPVLGNLAVPVRVKVGLGVLVALVVAPTLESVPKIE 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + ++ +G G +R+ ++ G + +GL T + Sbjct: 66 LASAPGLLV--LGQQIMIGLAMGFAMRIIFSAIELAGEIAGLQMGLGFATFFTPHSDGSS 123 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +G++G LA + H + AL+ S+ PI E + F + Sbjct: 124 LVLGRFLGLLGTLAFLSFNGHLLMLSALIDSFNAFPISTEPFSNMGWKRLAEWGSVIFSV 183 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L+L+ P + ++ N+++G+L + PQ+ I+ + P + +G L LS+ Sbjct: 184 GLQLALPVVAALLIVNLALGILTRASPQLNIFAVGFPITLMIGMSALMLSLPHFTPVLER 243 Query: 242 SFLYGF 247 G Sbjct: 244 LITDGL 249 >gi|170757192|ref|YP_001782263.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum B1 str. Okra] gi|169122404|gb|ACA46240.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B1 str. Okra] Length = 609 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 105/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ A+ + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DINSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G ++ T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ID HH + ALV+S+ I +G +N+ F I ++++ P Sbjct: 127 WFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVINVFIQYFYISIKIAVPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +F Sbjct: 187 VFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 240 >gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] Length = 614 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 120/231 (51%), Gaps = 1/231 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++LF I RV + + + P ++ F++ FS LL + D ++ + + Y Sbjct: 7 FLALFFIFLRVTAFFAITNIFFPNGTPKTLKAMFSLIFSFALLGGI-DYSNINSITSNYY 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ E+ G V GL+ + + GS+I IGL++ ++ + + T +L+ Sbjct: 66 LIIYMISEVTTGLVLGLISNIAFEVVLMAGSLIDVHIGLSMVNTIDPNSKTSTTISGNLL 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L+ +V+D HH + +L++S+ +P+G+ L + + + ++ F+I L+++ P Sbjct: 126 HYVALMIFFVVDGHHMLIKSLIESFIILPMGKSLMYTDTMMVLIEVIAKYFVIGLKIAIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + I+ ++ +GL+++ VPQI + + P + +G L + +S+ II+ F Sbjct: 186 IVLIIILTDLCMGLISRAVPQINVMILGMPVKMLVGILAISVSLPIIIKLF 236 >gi|188588311|ref|YP_001920219.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum E3 str. Alaska E43] gi|188498592|gb|ACD51728.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E3 str. Alaska E43] Length = 610 Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 110/234 (47%), Gaps = 1/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++LF I R+ S +++ + P ++ ++ SI ++ + D + N Y Sbjct: 7 FLALFFIFLRLTSYFVIVNAFFQTGTPHILKGALSLIISIAVIAGV-DYSTVNEINNVYY 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + E+ G V G + + ++F GS + G ++ + + + T + + Sbjct: 66 LIIYGLNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHTQSTLIGNFA 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +I + +++D HH V L++S+ +PIG+ L + + ++ + F++ ++++ P Sbjct: 126 YMIATVIFFIVDGHHIVIKLLIESFRIVPIGETLVYQETMMAVISTITEYFVLGVKIAIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + ++ ++ +GL+++ VP IPI P LG + + + +I S++ Sbjct: 186 IVLIIVITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSNA 239 >gi|187933790|ref|YP_001885058.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum B str. Eklund 17B] gi|187721943|gb|ACD23164.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B str. Eklund 17B] Length = 613 Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 109/234 (46%), Gaps = 1/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++LF I R+ S +++ + P ++ ++ SI +L + D + N Y Sbjct: 7 FLALFFIFLRLTSYFVIVNAFFQTGTPHILKGTLSLIISIAVLAGV-DYSTVNEINNVYY 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + E+ G V G + + ++F GS + G ++ + + + T + + Sbjct: 66 LIIYGLNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHSQTTLIGNFS 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +I + +++D HH V L++S+ +PIGQ L + + ++ + F++ ++++ P Sbjct: 126 YMIATVIFFIVDGHHIVIKLLIESFRIVPIGQTLVYQETMMAVISTITEYFVLGVKIAVP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + ++ ++ +GL+++ VP IPI P LG + + + +I S + Sbjct: 186 IVLIIVITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSSA 239 >gi|146312187|ref|YP_001177261.1| flagellar biosynthesis protein FliR [Enterobacter sp. 638] gi|145319063|gb|ABP61210.1| flagellar biosynthetic protein FliR [Enterobacter sp. 638] Length = 264 Score = 165 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + IM P LS IP +V++ M + V+ P L + + Sbjct: 12 WLGLYFWPLLRVMALIMTAPILSEKSIPKRVKIGLGMLITFVIAPTL---PPVNVPIFSP 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ +G G +++ ++ G +I +GL+ T L L + Sbjct: 69 QAIWLALQQVLIGVAIGFTMQLAFAAIRTAGELIGLQMGLSFATFFDPGSHLNMPVLARV 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 IDMLAMLLFLTFNGHLWLISMLVDTFHTLPIGGNPVNSNAFLALTRAAGLIFINGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+S+GLLN++ PQ+ ++ I P + +G + + L + +I H F F Sbjct: 189 PVITLLLTVNLSLGLLNRMAPQLSVFVIGFPITLTVGLILMGLLMPLIAPFCEHLFSEIF 248 >gi|168180929|ref|ZP_02615593.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum NCTC 2916] gi|182668325|gb|EDT80304.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum NCTC 2916] Length = 609 Score = 165 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 105/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ A+ + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G ++ T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ID HH + ALV+S+ I +G +N+ F I ++++ P Sbjct: 127 WFSTIVFFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYISIKIAVPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + SF Sbjct: 187 IFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSSF 240 >gi|148380604|ref|YP_001255145.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. ATCC 3502] gi|153931538|ref|YP_001384891.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A str. ATCC 19397] gi|153937825|ref|YP_001388360.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A str. Hall] gi|148290088|emb|CAL84207.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC 3502] gi|152927582|gb|ABS33082.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. ATCC 19397] gi|152933739|gb|ABS39238.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. Hall] Length = 609 Score = 165 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 105/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ A+ + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G ++ T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ID HH + ALV+S+ I +G +N+ F I ++++ P Sbjct: 127 WFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYISIKIAVPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +F Sbjct: 187 VFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 240 >gi|297617156|ref|YP_003702315.1| flagellar biosynthetic protein FliR [Syntrophothermus lipocalidus DSM 12680] gi|297144993|gb|ADI01750.1| flagellar biosynthetic protein FliR [Syntrophothermus lipocalidus DSM 12680] Length = 254 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 100/236 (42%), Gaps = 1/236 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ RV + P S IP+Q+++ + + ++ ++ N + Sbjct: 8 FLLVFARVSGLFLSAPVYSSRQIPVQIKVFLGLLLAAIIT-YVRPISTRVELDNTGIFLV 66 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + VE+F G GL V +Q G ++ +G + M + + S ++ Sbjct: 67 ALAVEVFTGYALGLAGYVLFAAVQLAGQLVDMQMGFGIVNVMDPQSGMQVPLVGSFYYLL 126 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L ID HHQ+ A+ SY IPI + V + F++ +++++P + Sbjct: 127 AILVFLGIDGHHQLLSAVYHSYDVIPILGAKFQPGFTAFLVKLGGYMFVLGVKIAAPVVA 186 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +V + ++G + + VPQ+ I+ + P I G + L L I + V+ F F Sbjct: 187 ALLVADTALGFMARTVPQMNIFLVGMPLKILGGIVMLLLVIPVYVWLLQVLFAQFF 242 >gi|170748649|ref|YP_001754909.1| flagellar biosynthetic protein FliR [Methylobacterium radiotolerans JCM 2831] gi|170655171|gb|ACB24226.1| flagellar biosynthetic protein FliR [Methylobacterium radiotolerans JCM 2831] Length = 253 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 121/243 (49%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M + I + + R+G+ IML+PG+ + ++RL FA+ ++VL P + + Sbjct: 1 MNLLLPGIASAYLITFARIGTLIMLMPGIGEQTVSPRLRLAFALLTALVLFPTVRPLLGG 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 V L+ E +G V GL +R+ LQ G +IS +GL+ ++ S Sbjct: 61 TEGVAGPRLIGLLFGETIIGLVLGLTVRMILAALQTAGVIISAQVGLSYAMTVDPSQGGQ 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + + + + ++G+ ++ D HH + +SY +P +F + L F Sbjct: 121 QVAIGNFLSLLGITLIFAADLHHLAIEGVARSYEVLPPDGVPSFSDALMLATKALARGFT 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + +++S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G L L + +++ F Sbjct: 181 LAVQISGPFIAFGILFNLGLGVLSRLMPQMQVFFLAVPASVLIGMLLLMGCLGVMMGVFL 240 Query: 241 HSF 243 Sbjct: 241 DDL 243 >gi|251779901|ref|ZP_04822821.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084216|gb|EES50106.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 613 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 110/234 (47%), Gaps = 1/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++LF I R+ S +++ + P ++ ++ SI ++ + D + N Y Sbjct: 7 FLALFFIFLRLTSYFVIVNAFFQTGTPHILKGVLSLIISIAVIAGV-DYSTVNEINNVYY 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + E+ G V G + + ++F GS + G ++ + + + T + + Sbjct: 66 LIIYGLNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHTQSTLIGNFA 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +I + +++D HH V L++S+ +PIG+ L + + ++ + F++ ++++ P Sbjct: 126 YMIATVIFFIVDGHHIVIKLLIESFRIVPIGETLVYQETMMAVISTITDYFVLGVKIAIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + ++ ++ +GL+++ VP IPI P LG + + + +I S++ Sbjct: 186 IVLIIVITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSNA 239 >gi|148256776|ref|YP_001241361.1| flagellar biosynthesis protein FliR [Bradyrhizobium sp. BTAi1] gi|146408949|gb|ABQ37455.1| Flagellar biosynthetic protein fliR [Bradyrhizobium sp. BTAi1] Length = 255 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 1/233 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L R+G+ +MLLPGL IP++++L A+ ++++LP + + + Sbjct: 15 FMLAFARIGAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLHRQAYQV-DLQALSPLLV 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ E+ +G V G RV LQ GSVI+ +GL T++ + + + + ++ Sbjct: 74 MMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFLTML 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G+ L+ D HH V AL SY G+ + G++ S F I L+LS+PFL Sbjct: 134 GVTLLFSTDSHHLVIAALSDSYKIFAPGEVIPSGDVASLATRAFAAAFKIGLQLSAPFLV 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 F +VFNI +G+L +L+PQ+ +YF+ P I +G L L + ++ F F Sbjct: 194 FGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFGLVLAAMMGTFLGYFE 246 >gi|322806976|emb|CBZ04546.1| flagellar biosynthesis protein FlhB [Clostridium botulinum H04402 065] Length = 609 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 104/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ A+ + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DISSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G + T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ID HH + ALV+S+ I +G +N+ F I ++++ P Sbjct: 127 WFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFINQEGIKHVLNVFIQYFYISIKIAVPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +F Sbjct: 187 VFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 240 >gi|73539699|ref|YP_300066.1| flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134] gi|72123036|gb|AAZ65222.1| Flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134] Length = 261 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 100/241 (41%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + I P S IP +V++ A ++V+ P L + + + + Sbjct: 11 GWIATFLWPFFRLLALIGTAPLFGESTIPGRVKVGLAALTAMVVSPTLGNLPVVPVYSWQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +++ E+ +G G +R+ +Q G +I +GL + + L Sbjct: 71 GL--IIILNEVGIGLATGFTMRLVFAIVQQAGEIIGMQMGLGFASFFDRAAGGQTMVLAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + II +L +D H + ALV S+ +PIG G + + F L L+ Sbjct: 129 FLNIIAVLLFLAMDGHLLMLGALVDSFQGLPIGATPVSGEGWHAVARAGGMVFSSGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ PQ+ I+ + P + G L L L + + H G Sbjct: 189 LPMIAALLTLNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLALVMPQMGSYMQHMIEAG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|260886651|ref|ZP_05897914.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC 35185] gi|330839518|ref|YP_004414098.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC 35185] gi|260863794|gb|EEX78294.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC 35185] gi|329747282|gb|AEC00639.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC 35185] Length = 260 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 108/242 (44%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + L++ RV ++ P IP +R+ A+AFS VL P + + N Sbjct: 8 QGHAAAYLLVLTRVTGIFVIAPFFGSLNIPAHIRVGTAVAFSFVLFPIVDSYGPVSAPDN 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 Y+ ELF+G + G + V + F G V+ +G + M + + Sbjct: 68 VFLYAAAAAGELFVGWLIGFVAYVTFSAIHFAGKVMDMQVGFAMVNVMDPTSGQQIPLIG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 S + + ++ V++ HH + AL +S+ ++P+ N+ VN++ F+ ++L Sbjct: 128 SFLYNLAIIVFLVVNGHHMLIAALFESFQSVPMMGLSPSPNLAGFVVNLVNGVFVTGMKL 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F ++ N+ +G+L + +PQ+ I+ + P I +G L + + V F Sbjct: 188 AMPVTFSILLTNVGLGILARTMPQLNIFVVGLPLQIVIGMFVLSILMPFYVLFLDVLFNE 247 Query: 246 GF 247 + Sbjct: 248 TY 249 >gi|153939695|ref|YP_001391947.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum F str. Langeland] gi|152935591|gb|ABS41089.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F str. Langeland] gi|295319965|gb|ADG00343.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F str. 230613] Length = 609 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 104/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ A+ + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G + T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ID HH + ALV+S+ I +G +N+ F I ++++ P Sbjct: 127 WFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYISIKIAVPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +F Sbjct: 187 VFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFIFALPLFLKVLNSAF 240 >gi|237796086|ref|YP_002863638.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4 str. 657] gi|229263066|gb|ACQ54099.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4 str. 657] Length = 609 Score = 164 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 104/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ A+ + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G + T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ID HH + ALV+S+ I +G +N+ F I ++++ P Sbjct: 127 WFSTIVFFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYISIKIAVPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +F Sbjct: 187 IFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 240 >gi|255523689|ref|ZP_05390655.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|296186693|ref|ZP_06855095.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|255512558|gb|EET88832.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|296048730|gb|EFG88162.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] Length = 320 Score = 164 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 110/235 (46%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +L LI R+ +++P S P V++ + + +L+P + D + N N Sbjct: 7 FTALILISIRMFCFFVVVPIFFPSGTPATVKVGITLIMAYILIPGV-DYTGINNINNNLP 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + M E G G + + ++F GS++ +G ++ T + S T + ++ Sbjct: 66 FIINCMNEAVAGFTLGFITNLCFNSVRFAGSIMDMQVGFSMMTMFDPTSSSNTTLIEHIL 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ +++D HH + AL++S+ I +G N + + + F I ++++ P Sbjct: 126 YWFSMVVFFIVDGHHMLIKALIESFKVIKLGNFFLNQNSINLIIRVFIEYFEIAVKIAIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ +I++GL+++ VPQ+ + + P I +G C ++ I + +SF Sbjct: 186 IVLIILITDITMGLVSRTVPQLNVMILGMPVKILVGLGAFCFALPIFLKMIENSF 240 >gi|170761528|ref|YP_001787967.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A3 str. Loch Maree] gi|169408517|gb|ACA56928.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A3 str. Loch Maree] Length = 609 Score = 164 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 104/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ A+ + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G + T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ID HH + ALV+S+ I +G +N+ F I ++++ P Sbjct: 127 WFSTIVFFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYISIKIAVPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +F Sbjct: 187 IFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 240 >gi|30248475|ref|NP_840545.1| hypothetical protein NE0459 [Nitrosomonas europaea ATCC 19718] gi|30138361|emb|CAD84370.1| Bacterial export protein, family 1 [Nitrosomonas europaea ATCC 19718] Length = 265 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 2/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L + R+ + + P L S IP Q +L A+ +I++ P L + Sbjct: 12 WLSTLIWPLARILALLASTPLLGSSSIPTQTKLGLAVLLAILIAPLLPPLPQIDPGSGVG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++M ++ +G G +R+ ++ G + +GL T S + Sbjct: 72 L--IVLMQQIIIGLAMGFSMRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQVQLVGRF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 G++ L ID H QV L S+ T+PIG E F++ VN FM+ L LS Sbjct: 130 YGLLATLTFLAIDGHLQVIAILAHSFTTLPIGAEGMSTTSFTALVNWGIKIFMLGLHLSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P L ++ N+++G+L + PQ+ I+ + P +G+G L + ++ + F F Sbjct: 190 PVLTALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPLLNQLFQESF 249 >gi|90423032|ref|YP_531402.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisB18] gi|90105046|gb|ABD87083.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris BisB18] Length = 256 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 1/238 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L+ R+ + +ML+PG + IP++++L A+ ++V+LP + + + Sbjct: 10 ALAAAFMLVFARIAAMVMLMPGFGETNIPVRIKLAIALVLTLVILPLHRSDYQV-DMTSL 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L++ E+ +G V G RV LQ GSVI+ +GL TS+ + + + Sbjct: 69 TPLIVLMLHEIVIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTSVDPTQGQQGAVIGN 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++GL L+ D HH V AL +SY G+ ++ G++ S F I ++LS Sbjct: 129 FLTLLGLTLLFATDTHHLVIAALNESYRIFSPGEFMSSGDVASLATRAFAAAFKIGMQLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +PFL F +VFNI +G+L +L+PQ+ +YF+ P I G L + +++ F F+ Sbjct: 189 APFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFAGFLIFGAVLATMMHTFLDYFI 246 >gi|75675329|ref|YP_317750.1| flagellar biosynthesis protein FliR [Nitrobacter winogradskyi Nb-255] gi|74420199|gb|ABA04398.1| Flagellar biosynthesis protein FliR [Nitrobacter winogradskyi Nb-255] Length = 256 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 1/235 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + L+ RVG+ +MLLPG YIP++V+L A+ + ++LP + + + A Sbjct: 13 AAFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAAYHV-DMQSVAPL 71 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + L++ E+ +G V G RV L GSVI+ +GL TS+ + + + + Sbjct: 72 AVLLVHEIIIGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQGQQGALMGNFLT 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+PF Sbjct: 132 LLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGAFKIGLQLSAPF 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L F +VFNI +G+L +L+PQ+ +YF+ P I +G + + ++ + + Sbjct: 192 LVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFMIFAAVLASMMGTYMDYLI 246 >gi|226950059|ref|YP_002805150.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2 str. Kyoto] gi|226843732|gb|ACO86398.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2 str. Kyoto] Length = 609 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 103/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ + + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLVLIIAYMLVGSI-DIRSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G + T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ++ID HH + ALV+S+ I +G +N+ F I ++++ P Sbjct: 127 WFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFINQEGIKHVLNVFIQYFYISIKIAVPI 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +F Sbjct: 187 IFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 240 >gi|187478198|ref|YP_786222.1| flagellar biosynthetic protein [Bordetella avium 197N] gi|115422784|emb|CAJ49312.1| flagellar biosynthetic protein [Bordetella avium 197N] Length = 264 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 98/241 (40%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 M R+ + + P S S IP++V++ A + + P L + Sbjct: 11 GWMGQFLWPFIRILALVGSAPLFSESTIPVKVKIGLAFMLAAAIAPGLPPMPSVSPSSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L+ ++ +G G +RV +Q G I +GL+ + L+ Sbjct: 71 GLL--LLAQQVLIGVALGFTMRVVFSAVQTAGEYIGLQMGLSFASFFDPGTGANTAVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+ +L +D H + ALV+S+ +P+ + N V T F+ L L+ Sbjct: 129 FMNILAMLIFLALDGHLLMLAALVRSFDILPLTPAVLDRNGLGVLVQWGGTVFISGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ PQ+ ++ + P ++ +G L L + + F G Sbjct: 189 LPLVCALLTINLAMGILNRAAPQLTVFAVGFPIMLTIGLLVLSVVLPHSGPFLEQLFERG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|125973004|ref|YP_001036914.1| flagellar biosynthesis protein FliR [Clostridium thermocellum ATCC 27405] gi|256004801|ref|ZP_05429776.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM 2360] gi|281417215|ref|ZP_06248235.1| flagellar biosynthetic protein FliR [Clostridium thermocellum JW20] gi|125713229|gb|ABN51721.1| type III secretion system inner membrane R protein [Clostridium thermocellum ATCC 27405] gi|255991251|gb|EEU01358.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM 2360] gi|281408617|gb|EFB38875.1| flagellar biosynthetic protein FliR [Clostridium thermocellum JW20] gi|316940760|gb|ADU74794.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM 1313] Length = 261 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 102/231 (44%), Gaps = 2/231 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI R+ ++ P IP ++ F+ +++L+ + + F N Y Sbjct: 15 FMLIFVRMTGLFVIAPIFGSRNIPTYCKIGFSFMTALILVNTI--KVQELYFSNIYEYFI 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G G + + + G I IG + + +S + ++ ++ Sbjct: 73 LVLKEFLVGITLGYVAYMIFTAIYVAGQFIDMQIGFGVVNVIDPLNSTQVSITSNFYFLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L + H+ + AL SY IP+G + ++ + V + F+I ++S+P Sbjct: 133 CMLVFLICRGHYILIRALFASYNYIPVGTGVFGEDMVNDIVRVFGNIFLIAFKISAPITI 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ +++G+++K VPQ+ ++ + P I LG + ++I + + + Sbjct: 193 SIMISEVALGIVSKTVPQLNVFMVGMPLKIILGLAVMVITIPMFLNLVENL 243 >gi|220929450|ref|YP_002506359.1| flagellar biosynthesis protein FliR [Clostridium cellulolyticum H10] gi|219999778|gb|ACL76379.1| flagellar biosynthetic protein FliR [Clostridium cellulolyticum H10] Length = 265 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 100/226 (44%), Gaps = 1/226 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI R+ + P IP+ ++ FA + +L + + N N ++ Sbjct: 15 FLLIFVRMTGLFVTAPIFGRRNIPVYYKVGFAF-ITAILASSVIRVDHIINTDNFLIFAL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E +G + G + + G +I IG + ++ +L I+ Sbjct: 74 YILKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPISNIQIPVTANLYFIL 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 ++ + + HH + AL +S+ IP+G + + + ++Q F + ++++P + Sbjct: 134 SMIIFLLTNGHHMLIRALYESFQIIPLGSAVIGPKLKDDVIGIMQGVFSMGFKIAAPIVA 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + ++ +G+++K +PQ+ ++ + P I +G L + ++I VY Sbjct: 194 AIFITDVVLGIISKTIPQMNVFILGMPLKIFVGILIILITIPAFVY 239 >gi|332799193|ref|YP_004460692.1| flagellar biosynthetic protein FliR [Tepidanaerobacter sp. Re1] gi|332696928|gb|AEE91385.1| flagellar biosynthetic protein FliR [Tepidanaerobacter sp. Re1] Length = 258 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 108/243 (44%), Gaps = 3/243 (1%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M ++ E+ ++ LI+ R + L P IP Q+++ A S ++ P + +L Sbjct: 1 MNVNYEVALIKYLLILFRCLGFLTLTPVFGRREIPFQIKIGLAALLSFIVYPII---PEL 57 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + N S V+ EL G G + L G +I +G + + + Sbjct: 58 ELNNNLWIVSASVLRELMAGITMGYATFLLFSSLYLAGGIIDLEMGFGMVNVLDPQSNAQ 117 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + + I+ +L ++ HH + A++KSY +P+G+ + + + + + F+ Sbjct: 118 VPLMGNYYYILTILLFLTVNGHHMLISAIIKSYDLLPLGKPVYQEGLLNVIIVSFKDMFI 177 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + ++++ P + + ++G++ + VPQ+ ++ + P I +G + + + + + Sbjct: 178 LGVQIALPVTAIIFLTDFALGIIARTVPQMNVFIVGLPLKIAIGMIGMIIVFPMYLVILD 237 Query: 241 HSF 243 + + Sbjct: 238 YIY 240 >gi|162138518|ref|YP_487378.2| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris HaA2] Length = 255 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + L+ RVG+ +MLLP L S IP +++L A+ ++++LP + + + + Sbjct: 13 AAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQV-DMSSLTPL 71 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L++ E+ +G V G RV LQ GSVI+ +GL T++ + + + + Sbjct: 72 LVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLT 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I+G+ L+ D HH V AL SY G+ LN G++ + +F I ++L++PF Sbjct: 132 ILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAASFKIGMQLAAPF 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L F +VFNI +G+L +L+PQ+ +YF+ P I +G + + ++ F F Sbjct: 192 LVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGTFLAYF 245 >gi|159184373|ref|NP_353608.2| flagellar biosynthesis protein FliR [Agrobacterium tumefaciens str. C58] gi|159139686|gb|AAK86393.2| flagellar biosynthetic protein FLIR [Agrobacterium tumefaciens str. C58] Length = 240 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 147/233 (63%), Gaps = 1/233 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VNRAYYS 70 +FL +CR+G+C M +PG S S I Q+R+ +A S+ LLP LWDTI + ++ Sbjct: 1 MFLAICRIGACFMTMPGFSSSRISPQIRMLLCVAVSMALLPVLWDTIYPKVSGASQGAVV 60 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+ E+ +G ++GL+ R YTLG QFTG++I +IGL+ + + E + + I Sbjct: 61 GLIFSEVLIGAMYGLIARFYTLGFQFTGALIGASIGLSAPGGADPIEDVQENQIANFITF 120 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 GLL L+++DFHH V ALV SY P+G ++ + + + L+ +F IMLRL+SPF+ Sbjct: 121 GGLLVLFMMDFHHIVLKALVDSYSATPVGALISGQKMLITLTDTLRASFSIMLRLASPFV 180 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++FN+++GL+NKL PQIP++FISTP+++ G L LS+ ++ QF F Sbjct: 181 IYGLMFNVAVGLINKLAPQIPVFFISTPFVLAGGLFMLYLSVAALIRQFVDGF 233 >gi|311105948|ref|YP_003978801.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans A8] gi|310760637|gb|ADP16086.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans A8] Length = 262 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 102/241 (42%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + R+ + + P S S IP++V++ + ++ + P L + Sbjct: 11 GWIGQFLWPFVRILALVGTAPLFSESLIPIKVKIGLSFVLAVAISPALDPVPPIAPGSFT 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +VM ++ +G G +R+ +Q G + +GL+ + S L+ Sbjct: 71 GLW--MVMQQVLIGIALGFTMRLVFAAVQTAGEFVGLQMGLSFASFFDPSSGANTAVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L II +L +D H V ALV+S+ T+P+ N F V +T F+ L L+ Sbjct: 129 LFNIIAMLTFLALDGHLLVLAALVRSFDTLPVAMIQLHQNGFGVVVEWGKTIFISGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ Q+ ++ I P + +G L + + F G Sbjct: 189 LPLICALLTINLAMGILNRAAQQLSVFSIGFPVTLIIGVTILTVVLPHAGPFLESLFESG 248 Query: 247 F 247 F Sbjct: 249 F 249 >gi|325981179|ref|YP_004293581.1| flagellar biosynthetic protein FliR [Nitrosomonas sp. AL212] gi|325530698|gb|ADZ25419.1| flagellar biosynthetic protein FliR [Nitrosomonas sp. AL212] Length = 265 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + + R+ + I P L P++V+L A+ +I++LP + ++ + + Sbjct: 12 LLAAFIWPLSRILALIASAPILGNPSTPVRVKLGLAIMITILILPLVEKSLPQIDPASGI 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ +G G ++RV + ++ G +I +GL +S + Sbjct: 72 GLVIL-LQQILIGAAIGFVMRVVFVAVEMAGELIGLQMGLGFAIFFDPQNSGQIDIIGRF 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 +G+I LA +D H + + +S+ T+PIG F++ N F L+LS Sbjct: 131 LGVIASLAFLAMDGHLLMIALISQSFSTLPIGSAALTDVTFTTLANWGGEIFKSGLQLSL 190 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P L ++ NI++G+L ++ PQ+ I+ + P + +G L L LS+ + G Sbjct: 191 PVLTALLITNIALGILTRVAPQLNIFAVGFPLTLAIGFLVLGLSMPFYTPILEYLVHDGL 250 >gi|187778764|ref|ZP_02995237.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC 15579] gi|187772389|gb|EDU36191.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC 15579] Length = 587 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 99/219 (45%), Gaps = 1/219 (0%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 ++P P+ ++ A+ + +L+ + D + N ++ E+ G + G Sbjct: 1 MVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DISSINTINNSTALIFNIVNEILAGAILG 59 Query: 85 LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQ 144 + + ++ G+++ +G ++ T S + T L ++ + ++ID HH Sbjct: 60 YITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILYWFSTIVFFLIDGHHM 119 Query: 145 VFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLN 204 + ALV+S+ I +G +N+ F I ++++ P +F ++ ++++GL+ Sbjct: 120 LIRALVESFNVIKLGAFFLNQEGIKHVINVFIQYFYISIKIAVPIVFIILITDLTLGLVA 179 Query: 205 KLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + VPQ+ I + P I +G ++ + + + +F Sbjct: 180 RTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 218 >gi|91976175|ref|YP_568834.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisB5] gi|91682631|gb|ABE38933.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris BisB5] Length = 255 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 124/234 (52%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + L+ R+G+ +ML P L S IP++++L A+ ++++LP + + + Sbjct: 13 AAFMLVFARIGAMVMLFPTLGESNIPVRIKLSIALGLTLIILPLHRSAYQV-DMSSLTPL 71 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 +++ E+ +G V G RV LQ GSVI+ +GL T++ + + + + Sbjct: 72 LVMMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLT 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I+G+ L+ D HH V AL SY G+ L+ G++ + +F I ++L++PF Sbjct: 132 ILGVTMLFATDSHHLVIQALSDSYKIFAPGELLSSGDVAALATKAFAASFKIGMQLAAPF 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + ++ F + F Sbjct: 192 LVFGLVFNIGLGILARLMPQMQVYFVGVPLSIAIGFIILAAVLTTMMSTFLNYF 245 >gi|121533744|ref|ZP_01665571.1| flagellar biosynthetic protein FliR [Thermosinus carboxydivorans Nor1] gi|121307735|gb|EAX48650.1| flagellar biosynthetic protein FliR [Thermosinus carboxydivorans Nor1] Length = 260 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 102/236 (43%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI RV + P L IP+ + FA+ S +L P + + Y Sbjct: 14 FLLIFTRVTGILTTAPILGSRNIPVYTKAGFALILSYILTPIVVQRSHIIVPDQFGAYVF 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ EL +G + G + + +Q G ++ IG + + + + I Sbjct: 74 LVIGELLIGLILGYISSMIFYAVQMAGQLLDMQIGFGIVNIIDPQSGQQLPLIGNFKYIF 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL + + HH + AL S+ T+P+G + + +++ + +I L++S P L Sbjct: 134 SLLVFFATNGHHILLSALFTSFKTVPVGAAVFRPQLADLVIDITFSVLIIALKISLPILV 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + +I++G+L +++PQ+ I+ + P I +G L L++ + F + Sbjct: 194 AIFLTDIAMGILARIMPQMNIFIVGIPGKIIVGIFMLALTLPFYITLLEVGFSAMY 249 >gi|311279108|ref|YP_003941339.1| flagellar biosynthetic protein FliR [Enterobacter cloacae SCF1] gi|308748303|gb|ADO48055.1| flagellar biosynthetic protein FliR [Enterobacter cloacae SCF1] Length = 264 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 112/240 (46%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + + P LS +P +V+L + ++ P L T D+ F A Sbjct: 12 WLSLYFWPLLRVLALVSTAPILSEKTVPKRVKLGLGFIITAIVAPTLPPT-DVTLFSPNA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G +++ ++ G +I +GL+ T + S +L+ L + Sbjct: 71 LW--LAIQQILIGIALGFTMQLAFAAIRTAGEIIGLQMGLSFATFVDPSSNLSMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L V + H + LV ++ T+PIG GN F + F+ L L+ Sbjct: 129 MDMLAMLLFLVFNGHLWLISLLVDTFHTLPIGGLPLNGNAFLALSRAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ ++ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTINLALGMLNRMAPQLSVFVIGFPITLTVGLILMSALMPLIAPFCEHLFSEIF 248 >gi|288942623|ref|YP_003444863.1| flagellar biosynthetic protein FliR [Allochromatium vinosum DSM 180] gi|288897995|gb|ADC63831.1| flagellar biosynthetic protein FliR [Allochromatium vinosum DSM 180] Length = 260 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 101/240 (42%), Gaps = 2/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +SL R+ + ++++P I +VRL A+ + ++ P L + + Sbjct: 14 WTVSLVWPFVRISAMLLVMPVFGARQINARVRLGLALLLAWMIAPQLPEVPAIDPLSVGG 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + + +G G ++ + + G I+ ++GL +++ + ++ Sbjct: 74 --VVVAIEQALIGIAMGFVVTLVFSAINQAGEAIALSMGLGFASAVDPVGGVQVPMISQY 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + II L ++ H +F L++S+ T PIG + N F + ++ Sbjct: 132 LSIIATLIFLAMNGHLVLFELLLRSFETFPIGLDGPDNEDLWYIANFGSQMFAGAVLIAL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ N+++G++ + PQ+ I+ I P I G L + L++ + + L Sbjct: 192 PAVASLLLVNLAMGVVTRAAPQLNIFAIGFPITILAGFLIILLTLPSLTARIGDFLLTAL 251 >gi|316932837|ref|YP_004107819.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris DX-1] gi|315600551|gb|ADU43086.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris DX-1] Length = 268 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 124/237 (52%), Gaps = 1/237 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L+ R+G+ +ML+P L S IP +++L A+ ++++LP + + + Sbjct: 23 ALAATFMLVFARIGAMVMLMPALGESNIPTRIKLSIALLLTMIMLPLHRSAYQI-DMSSL 81 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L++ E+ +G V G RV LQ G+VI+ +GL +++ + + + Sbjct: 82 TPLLVLMVQEIAIGIVLGATARVTLSALQVAGAVIAQQLGLGFVSAVDPTQGQQGVLVGN 141 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++G+ L+ D HH V AL SY G+ LN G++ + F + L+L+ Sbjct: 142 FLTLLGVTMLFATDMHHLVIQALSDSYKVFAPGELLNTGDVAALATQAFAAAFKLGLQLA 201 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +PFL F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + + ++ F F Sbjct: 202 APFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIVIGFIVLAVVLTTMMGAFLGYF 258 >gi|308068670|ref|YP_003870275.1| flagellar biosynthetic protein fliR [Paenibacillus polymyxa E681] gi|305857949|gb|ADM69737.1| Flagellar biosynthetic protein fliR [Paenibacillus polymyxa E681] Length = 261 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 7/240 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI CR+ S ++ P S +P ++ + ++V+ + V Y Sbjct: 11 FLLIFCRITSFFVVAPIFSTRGVPNIFKVGISGFLALVVYLTYGTHQQVPTDVA---YVL 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV E+ +G + G ++ +Q GS I +G + + + + I Sbjct: 68 LVGREVLIGLLLGFTAYLFMTAIQTAGSFIDLQVGFGMASVFDPMTGASTPLTGNFKFAI 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIMLRLSS 187 +L I+ HH + A++ SY +P+ + G++ V +FM+ ++++ Sbjct: 128 AVLFFLSINGHHHLLNAILYSYDWVPLTNDFFVKLYGGSVTEFLVRSFAESFMLAFQIAA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++ +G L K PQ I+ I P I +G L L + + F F F Sbjct: 188 PIVVATFLTDVGLGFLAKTAPQFNIFVIGVPLKIIVGLFMLLLLMPSFAFIFERLFSVMF 247 >gi|326204608|ref|ZP_08194464.1| flagellar biosynthetic protein FliR [Clostridium papyrosolvens DSM 2782] gi|325985175|gb|EGD46015.1| flagellar biosynthetic protein FliR [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 98/226 (43%), Gaps = 1/226 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI R+ + P IP+ ++ FA + +L + + N N ++ Sbjct: 15 FLLIFVRMTGLFVTAPIFGRRNIPVYFKVGFAF-ITAILASSVIKVDHIINTDNFLIFAL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E +G + G + + G +I IG + ++ +L I+ Sbjct: 74 YILKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPMSNIQIPVTANLYFIL 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 ++ V + HH + AL +S+ +P+G + + ++ F + ++++P + Sbjct: 134 AMIIFLVTNGHHMLIKALFESFQLVPLGSGVIGPKFTDDVIGLISGVFSMGFKIAAPVVA 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + ++ +G+++K +PQ+ ++ + P I LG L + ++I VY Sbjct: 194 AIFITDVVLGIISKTIPQMNVFILGMPLKIFLGILIVMITIPAFVY 239 >gi|261340415|ref|ZP_05968273.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC 35316] gi|288317507|gb|EFC56445.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC 35316] Length = 261 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V++ + +I++ P L +D+ F +A Sbjct: 12 WLGLYFWPMLRVLALISTAPILSERTIPKRVKVGLGIIITIIIAPSLPP-VDIPIFSAKA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L ++ +G G +++ ++ G +I +GL+ T + L L + Sbjct: 71 VWVAL--QQIMIGVAVGFTMQLAFAAVRTAGELIGLQMGLSFATFIDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 IDMLAMLLFLTFNGHLWLISMLVDTFHTLPIGDNPVNSNAFLALTRAAGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+S+GLLN++ PQ+ ++ I P + +G L + L + +I H F F Sbjct: 189 PIITLLLTVNLSLGLLNRMAPQLSVFVIGFPVTLTVGILLMSLLMPLIAPFCEHLFSELF 248 >gi|330961235|gb|EGH61495.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 258 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 114/233 (48%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + R+ S +M +P + + +P +VRL A+A ++V+ P L + +Q A Sbjct: 12 WVAAFMLPLFRIISLLMTMPIIGTTLVPRRVRLYLAVAITVVVAPALPNMPPVQALDLSA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLSMNGHLVVLEILVESFTTMPVGSGLLVNN-FWELANGLGWVLSSGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + +G + L L+I I+ Q+ Sbjct: 189 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWLTIGDILNQYQ 241 >gi|296103570|ref|YP_003613716.1| flagellar biosynthesis protein FliR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058029|gb|ADF62767.1| flagellar biosynthesis protein FliR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 261 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 108/240 (45%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + I P LS IP +V++ + +I++ P L + + A Sbjct: 12 WLGVYFWPMLRILALITTAPILSEKAIPKRVKVGLGIIITIIVAPSLPA---VNIPIFSA 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G +++ ++ G +I +GL+ T + L L + Sbjct: 69 NAVWVALQQILIGVAVGFTMQLAFAAVRTAGELIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ +L + H + LV ++ T+PIG+ N F + F+ L L+ Sbjct: 129 IDMLAMLLFLSFNGHLWLISMLVDTFHTLPIGENPVNSNAFLALTRAAGLVFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G L + L + +I H F F Sbjct: 189 PIITLLLTVNLALGLLNRMAPQLSVFVIGFPLTLTVGILLMSLLMPLIAPFCEHLFGEIF 248 >gi|115523574|ref|YP_780485.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisA53] gi|115517521|gb|ABJ05505.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris BisA53] Length = 256 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 1/227 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+ +ML+PG S IP +++L A+ ++++LP + + + A L++ E+ Sbjct: 21 RIGTMVMLMPGFGESNIPARIKLSIALGLTLIILPLHRSAYQV-DMTSMAPLIVLMLHEI 79 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G +RV LQ GSVI+ +GL T++ + + + + ++GL L+ Sbjct: 80 VIGIVLGATVRVTLAALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLTLLGLTLLF 139 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 D HH V AL +SY G+ L G+I + F I ++L++PFL F +VFN Sbjct: 140 ATDSHHLVIAALNESYRVFSPGELLPSGDIAALATRAFSAAFKIGMQLAAPFLVFGLVFN 199 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 I +G+L +L+PQ+ +YF+ P I +G L L + ++ F F+ Sbjct: 200 IGLGVLARLMPQMQVYFVGVPLSIVVGFLILIGVLAAMMGTFMDYFV 246 >gi|197120183|ref|YP_002140610.1| flagellar biogenesis protein FliR [Geobacter bemidjiensis Bem] gi|197089543|gb|ACH40814.1| flagellar biogenesis protein FliR [Geobacter bemidjiensis Bem] Length = 261 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 104/235 (44%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ L L++ RV +P +P +V++ A ++++ P + + + N + Sbjct: 13 LIPLALVLARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKPHV-VPNVSDSLG 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E +G G + + ++F G ++ T +G+++ + + Sbjct: 72 LMLLVLQETLIGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPATQNNVPTMAIFQ 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 G + L + H +V SY +P+G G + V F+I ++L++P Sbjct: 132 GALATLLFLAFNVHEYFIRGIVDSYRVVPLGAWHVSGGLLKFLVETSTGIFIIAIKLAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++++G++ + P + ++ +S P IG+G + L +S+ + V SF Sbjct: 192 VSVALLATSVALGIVARSFPAMNVFMVSMPLNIGIGFVILGISLPVFVRVLQGSF 246 >gi|295678049|ref|YP_003606573.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1002] gi|295437892|gb|ADG17062.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1002] Length = 260 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 109/240 (45%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+ + I P L + +P +V++ A +I++ P + + F Sbjct: 11 VWLTAFLWPFARIAALIATAPVLGNTSLPSRVKIGLAAFTTIIVAPTIGALPQVTVFSAD 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ + +G G+ +++ + TG I +GL T + + ++ Sbjct: 71 GVW--ILANQFLIGIALGVTMQIVFQAIDATGYFIGLGMGLGFATFFDQQATGSGVVISR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +LA +D H Q+ ALV ++ ++P+ L + + + N + F L LS Sbjct: 129 YMTTIAMLAFLAVDGHLQMIAALVTTFQSVPVSANLLAPHGWQTLANWGSSIFSAGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P + +G L + L + ++ F F G Sbjct: 189 LPVVVALLIANLALGILNRAAPQIGVFQIGFPLTMLVGLLLVQLMLPNMIPFFVRLFDSG 248 >gi|291613056|ref|YP_003523213.1| flagellar biosynthetic protein FliR [Sideroxydans lithotrophicus ES-1] gi|291583168|gb|ADE10826.1| flagellar biosynthetic protein FliR [Sideroxydans lithotrophicus ES-1] Length = 262 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 105/235 (44%), Gaps = 2/235 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+ + I P + +P ++++ FA+A +I++ P L +L + Sbjct: 11 AWLAAFIFPLARILALIASSPLYGIKEVPARIKVGFAIAITIIIAPTLDIPANLDPASAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ ++ G + G IR+ + ++ G + +GL + ++ + Sbjct: 71 GLFV--LVQQIVAGVIIGFSIRLIFVAVEMAGDLTGMQMGLGFASFYDPVNATFTPIVAQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 +GI+ LA + H + AL S+ PIG + + F + + F L+ S Sbjct: 129 FLGILASLAFLAANGHLYLLVALADSFRDFPIGATVPSAHAFRTMAEWGGSLFSHALQFS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ NI++G+L + PQ+ I+ + P I +G + L L++ + + Sbjct: 189 LPLIGALLITNIALGILARSAPQLNIFAVGFPITIAVGFVTLWLTLPYLAPVMDY 243 >gi|70729045|ref|YP_258779.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens Pf-5] gi|68343344|gb|AAY90950.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens Pf-5] Length = 255 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 109/233 (46%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + RV S +M++P + +P +VRL FA+A ++V+ P L ++ Sbjct: 9 WVASFMLPLFRVTSLLMVMPVFGTTLVPRRVRLYFALAITVVIAPGLPPMPEVHALDLSG 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV ++ +G V G ++++ G +++ +G+ + + ++ ++ + Sbjct: 69 LL--LVAEQILIGAVLGFSLQLFFQAFVVAGQIVAIQMGMGFASMVDPTNGVSVAVIGQF 126 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H VF L +S+ T+P+G L N + L L L Sbjct: 127 FTMLVTLLFLAMNGHLVVFEVLTESFTTLPVGGGLMV-NHYWELAGKLGWVLGAALLLVL 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + +S+ I+ Q+ Sbjct: 186 PAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIVWISLADILNQYQ 238 >gi|107021597|ref|YP_619924.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia AU 1054] gi|116688059|ref|YP_833682.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia HI2424] gi|170731409|ref|YP_001763356.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3] gi|254246636|ref|ZP_04939957.1| Flagellar biosynthesis protein FliR [Burkholderia cenocepacia PC184] gi|105891786|gb|ABF74951.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia AU 1054] gi|116646148|gb|ABK06789.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia HI2424] gi|124871412|gb|EAY63128.1| Flagellar biosynthesis protein FliR [Burkholderia cenocepacia PC184] gi|169814651|gb|ACA89234.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3] Length = 260 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 112/241 (46%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P++V++ A ++V+ P L D+ F + Sbjct: 11 GWLTAFLWPFVRMLALVATAPMVGHAAVPVRVKIGVAAFMALVVAPTLGAMPDVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G I ++GL T S A + Sbjct: 71 GIW--ILVNQFLIGVAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPAMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA +D H QVF AL S+ ++P+ +L + + T F + L LS Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALAASFQSLPVSADLLHAPGWRTLAAFGATVFEMGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI +Y I P + +G L + L I +V SH F G Sbjct: 189 LPVVVALLIANLALGILNRAAPQIGMYQIGFPVTLIVGLLLVQLMIPNLVPFVSHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|188586037|ref|YP_001917582.1| flagellar biosynthetic protein FliR [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350724|gb|ACB84994.1| flagellar biosynthetic protein FliR [Natranaerobius thermophilus JW/NM-WN-LF] Length = 257 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 2/234 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L++ R+ IM P +Y+P Q+++ F++ ++V LP L + Sbjct: 14 FILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSDYHIMNVILFA 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + EL +G G++ + +Q G +I +G + M + I+ Sbjct: 74 FM--ELMVGIAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQVPLIGQFKYIL 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 ++ VI+ HH + ++ +SY +PIG + G + + T F++ +++S+P L Sbjct: 132 AIMIFLVINGHHLLIRSVYESYQLLPIGNIFDLGAGGVALNELFSTVFVLAIQVSAPALG 191 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + NI++G+L + VPQ+ ++ I P I +G L L L + + F + Sbjct: 192 TLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLGNLFQH 245 >gi|257484901|ref|ZP_05638942.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289651608|ref|ZP_06482951.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aesculi str. 2250] gi|320325129|gb|EFW81198.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. glycinea str. B076] gi|320329388|gb|EFW85381.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. glycinea str. race 4] gi|330866460|gb|EGH01169.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889045|gb|EGH21706.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. mori str. 301020] gi|330986504|gb|EGH84607.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011079|gb|EGH91135.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 261 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q Sbjct: 15 WVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDLSG 74 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 75 LL--LIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQF 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 133 FTMLVTLLFLSMNGHLVVLEVLVESFTTMPVGGGLLVNN-FWELANGLGWALSSGLRLVL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+ Sbjct: 192 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQ 244 >gi|222530121|ref|YP_002574003.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor bescii DSM 6725] gi|312621586|ref|YP_004023199.1| flagellar biosynthetic protein flir [Caldicellulosiruptor kronotskyensis 2002] gi|222456968|gb|ACM61230.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor bescii DSM 6725] gi|312202053|gb|ADQ45380.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor kronotskyensis 2002] Length = 260 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ ++ P IP ++ FA S++++ + N Y Sbjct: 15 FFLVLARMSGLFIVSPIFGRRNIPAYFKIGFAFFLSLLVVSTYRFSYSAP--SNLLEYIF 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E +G + G + + + G +I AIG + + + L + + + Sbjct: 73 VVIKEFIVGLLIGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEVQVPLLGNFLYLY 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A++ SY +PIG E +F F+I + +S P L Sbjct: 133 MLVVFFGTDAHHLLIRAVIYSYKLVPIGYEGFRREFTWNFFRFFSELFLIGVEISLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ +I + +L++ VPQ+ ++ + P I +G L L + + Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVIIFPFM 236 >gi|312126837|ref|YP_003991711.1| flagellar biosynthetic protein flir [Caldicellulosiruptor hydrothermalis 108] gi|311776856|gb|ADQ06342.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor hydrothermalis 108] Length = 260 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + P IP ++ FA S++++ + + N Y Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIF 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V+ E +G + G + + + G +I AIG + + + L + + + Sbjct: 73 AVIKEFIVGLLVGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFLYLY 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A+V SY +PIG E SF+ F+I + +S P L Sbjct: 133 MLVVFFGTDAHHLLIRAVVYSYKLVPIGHESFRSEFTWSFLRFFSELFLIGVEISLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ +I + +L++ VPQ+ ++ + P I +G L L + + + Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVIILPFM 236 >gi|289629018|ref|ZP_06461972.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298487819|ref|ZP_07005859.1| Flagellar biosynthesis protein fliR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157544|gb|EFH98624.1| Flagellar biosynthesis protein fliR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330880587|gb|EGH14736.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. glycinea str. race 4] Length = 258 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q Sbjct: 12 WVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDLSG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLSMNGHLVVLEVLVESFTTMPVGGGLLVNN-FWELANGLGWALSSGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+ Sbjct: 189 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQ 241 >gi|304404262|ref|ZP_07385924.1| flagellar biosynthetic protein FliR [Paenibacillus curdlanolyticus YK9] gi|304347240|gb|EFM13072.1| flagellar biosynthetic protein FliR [Paenibacillus curdlanolyticus YK9] Length = 263 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 107/240 (44%), Gaps = 7/240 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI CR+ + ++ P SM +P ++ ++++ ++ V A Y Sbjct: 11 FLLIFCRMTAFFVVAPLFSMRGVPTTFKIGLGFFLTLIVFLTYGVK---ESIVPDATYIL 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V+ E+ +G + G ++ ++ +Q G+++ ++G + + + L +L +I Sbjct: 68 FVIREVLVGLLLGFVVYLFFTVVQTAGALMDISMGFAMSNVVDPMTGASSPMLGNLKYMI 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELN----FGNIFSSFVNMLQTTFMIMLRLSS 187 +L ++ HH + AL+ SY +P+ +L G + V TFM+ +++S Sbjct: 128 LVLVFLSMNGHHYMLTALMDSYKWMPLDNDLFARIYSGKVSEFIVLAFSETFMLAFQIAS 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++ +G L K PQ ++ I P I +G L L + + F H F F Sbjct: 188 PIIVAMFLTDVGLGFLAKTAPQYNVFVIGMPLKILIGVFMLTLILPSMSGVFEHLFSTMF 247 >gi|209522298|ref|ZP_03270925.1| flagellar biosynthetic protein FliR [Burkholderia sp. H160] gi|209497274|gb|EDZ97502.1| flagellar biosynthetic protein FliR [Burkholderia sp. H160] Length = 260 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 106/240 (44%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+ + I P +P +V++ A +I++ P + + F Sbjct: 11 VWLTAFLWPFARIAALIATAPIFGNMSLPSRVKIGLAAFATIIVAPTIGALPQVTVFSAA 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G+ +++ + TG I +GL T + + ++ Sbjct: 71 GVW--ILVNQFLIGIALGVTMQIVFQAIDATGYFIGLGMGLGFATFFDQQATGSGVVISR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L +D H Q+ ALV ++ ++P+ L + + + N + F L L+ Sbjct: 129 YMTTIATLVFLAVDGHLQMIAALVTTFQSVPVSANLLAPHGWQTLANWGGSIFSAGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P + +G L + L + ++ F F G Sbjct: 189 LPVVVALLIANLALGILNRAAPQIGVFQIGFPLTMLVGLLLVQLMLPNMIPFFVRLFDSG 248 >gi|312135836|ref|YP_004003174.1| flagellar biosynthetic protein flir [Caldicellulosiruptor owensensis OL] gi|311775887|gb|ADQ05374.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor owensensis OL] Length = 260 Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + P IP ++ FA S+++ T + + N Y Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKVGFAFFLSMIVFTAYNFTYSIPD--NVVEYVF 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E +G + G + + + G +I AIG + + + L + + + Sbjct: 73 VVIKEFIIGLLIGYISYMIFSAILLAGQIIDNAIGFGMANVVDPMSEVQVPLLGNFLYLY 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A+ SY +PIG SF+ F+I + LS P L Sbjct: 133 MLVVFFGTDAHHLLIRAIFYSYKLVPIGYGGFKTEFAWSFLRFFSELFLIGVELSLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ +I + +L++ VPQ+ ++ + P I +G L L + + + Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPVKIAIGFLVLVIILPFM 236 >gi|110632632|ref|YP_672840.1| flagellar biosynthesis protein FliR [Mesorhizobium sp. BNC1] gi|110283616|gb|ABG61675.1| flagellar biosynthetic protein FliR [Chelativorans sp. BNC1] Length = 248 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 90/240 (37%), Positives = 133/240 (55%), Gaps = 1/240 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 PE +++ FL CRVG+C ML+PGL + +PMQVRL A+ S+ LL LWD I Sbjct: 2 PETAILAAFLAFCRVGACFMLMPGLGSARVPMQVRLFVAVGASLALLAHLWDVIAPHASD 61 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS-MGISDSLAETP 123 L+ E+ +G + GL+ R+Y L LQF GS I+ G + + I ++ + Sbjct: 62 RPDILLLLIGSEILIGSLIGLVARLYVLALQFIGSAIALMTGFGMAAGGVAIEENEPQPA 121 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 + +LI L+ L+V++FHH + ALV SY PI + + + L F +M+ Sbjct: 122 VAALISFSALMLLFVLNFHHAIIEALVASYRLAPIEALFDPRAALTDIADTLSEAFFVMI 181 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 RL SPF+ + I+ N++ G +NKL PQIPIYFIS P++I G L L I + F+ F Sbjct: 182 RLGSPFVAYAILINLAFGFINKLTPQIPIYFISLPFVIAGGLLLLYFGIGTFLSLFADGF 241 >gi|330976010|gb|EGH76076.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 258 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 114/233 (48%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 12 WVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWALASGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG++ L +++ ++ Q+ Sbjct: 189 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGTVILWMTMGDMLNQYQ 241 >gi|89098626|ref|ZP_01171508.1| flagellar biosynthesis protein R [Bacillus sp. NRRL B-14911] gi|89086588|gb|EAR65707.1| flagellar biosynthesis protein R [Bacillus sp. NRRL B-14911] Length = 260 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 97/236 (41%), Gaps = 7/236 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI RV S +L+P S IP ++ + ++ D F Y Sbjct: 10 AFLLIFVRVTSFFLLMPLFSYRSIPNTHKIGLGFFLAWIIF----YAADAPAFEINGAYY 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L+M E +G V G + + +Q G +I +G + + + + Sbjct: 66 LLIMKEALVGLVIGFISYLILSAIQIAGGLIDFQMGFAIANVIDPQTGAQSPLMGQYLYT 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I L L +++ HH + + SY IP+ Q + + + F+ ++S Sbjct: 126 ISLFFLLMVNGHHLLIDGIFYSYQAIPLDQPWIPFGDEGMAEYMLRAFNSMFISAFQMSV 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P IG+ + L + +++Y S F Sbjct: 186 PVVGCLFLVDVALGIVARTVPQLNVFVVGIPLKIGVSFIVLVAVMSVLLYVVSQLF 241 >gi|253702492|ref|YP_003023681.1| flagellar biosynthetic protein FliR [Geobacter sp. M21] gi|251777342|gb|ACT19923.1| flagellar biosynthetic protein FliR [Geobacter sp. M21] Length = 261 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 104/235 (44%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ L L++ RV +P +P +V++ A ++++ P + + N + Sbjct: 13 LIPLALVLARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKPH-AVPNVSDSLG 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E +G G + + ++F G ++ T +G+++ + + Sbjct: 72 LMLLVLQEALVGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPATQNNVPTMAIFQ 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 G + L + H +V SY IP+G G + F+ F+I ++L++P Sbjct: 132 GALATLLFLAFNVHEHFIRGIVDSYRVIPLGAWHVSGGLMKFFIETSTGIFIIGIKLAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++++G++ + P + ++ +S P IG+G + L +S+ + V SF Sbjct: 192 VSVALLATSVALGIVARSFPAMNVFMVSMPLSIGIGFVILGISLPVFVRVLQGSF 246 >gi|312792665|ref|YP_004025588.1| flagellar biosynthetic protein flir [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179805|gb|ADQ39975.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor kristjanssonii 177R1B] Length = 260 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + P IP ++ FA S++++ + + N Y Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIF 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E +G + G + + + G +I AIG + + + L + + Sbjct: 73 VVIKEFIVGLLIGYISYMVFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFFYLY 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A+V SY +PIG E SF+ F+I + +S P L Sbjct: 133 MLVVFFGTDAHHLLIRAVVYSYKLVPIGYESVKREAALSFLKFFSELFLIGVEISLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ +I + +L++ VPQ+ ++ + P I +G L L + + + Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVIILPFM 236 >gi|312876515|ref|ZP_07736498.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor lactoaceticus 6A] gi|311796726|gb|EFR13072.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor lactoaceticus 6A] Length = 260 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + P IP ++ FA S++++ + + N Y Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIF 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E +G + G + + + G +I AIG + + + L + + + Sbjct: 73 VVIKEFIVGLLIGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFLYLY 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A+V SY +P+G E SF+ F+I + +S P L Sbjct: 133 MLVVFFGTDAHHLLIRAVVYSYKLVPLGYESVKKEAALSFLKFFSELFLIGVEISLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ +I + +L++ VPQ+ ++ + P I +G L L + + + Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVIILPFM 236 >gi|254502657|ref|ZP_05114808.1| flagellar biosynthetic protein FliR [Labrenzia alexandrii DFL-11] gi|222438728|gb|EEE45407.1| flagellar biosynthetic protein FliR [Labrenzia alexandrii DFL-11] Length = 257 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 1/235 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+G+ IMLLP L S IP + RL A+A ++VL P N A Sbjct: 11 VAAAFMLMFARLGTMIMLLPALGESSIPTRFRLTIALAMTLVLYPVGSQLYPADLVSNPA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NS 126 L++ E+ +G GL ++ T +Q G +++ GL IS+ + L + Sbjct: 71 QLGVLLISEIVIGVAIGLCAKLVTSAVQIAGVIMANQSGLAFALGTDISNEGQQGALYGN 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++G+ ++ D H+ V AL S+ P G G+ +F + F I +R+S Sbjct: 131 FLALVGITLIFTTDTHYLVIAALHDSFTLFPPGSMPPVGDFSENFAETVAMVFSIAVRMS 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +PFL +VF +GLLNKL+PQ+ I+FI+ P I +G L + I ++ + Sbjct: 191 APFLVVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIGFFLLMVLISTLMMFYLE 245 >gi|148266207|ref|YP_001232913.1| flagellar biosynthetic protein FliR [Geobacter uraniireducens Rf4] gi|146399707|gb|ABQ28340.1| flagellar biosynthetic protein FliR [Geobacter uraniireducens Rf4] Length = 261 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 110/235 (46%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+V R+ +P +P++V+ M +++L P + I + Sbjct: 13 LTLFSLVVGRMAGLFAAIPLFGSKSVPVRVKAAVIMVMALLLYPVIRTQIPPLP-SDSIS 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 S LV+ E +G G++ + ++F G ++ +G+++ + + + L Sbjct: 72 LSLLVVRETLIGLTIGIISQAIFAAVEFCGQIVGMQMGISMASLFDPNTQANVPTVALLQ 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 GI+ +L + HH A+V+SY IP+G G + + F++ ++LS+P Sbjct: 132 GILAMLLFLSLGVHHIFIRAIVESYRVIPVGAWHMSGGLMQFIITTTGAIFILAIKLSAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + ++++G++ + PQ+ I+ +S P IG+G L L LS+ + ++F Sbjct: 192 IMVALLATSVALGIMARSFPQMNIFMVSMPLNIGIGFLALGLSLLTFLRTLENAF 246 >gi|303240270|ref|ZP_07326789.1| flagellar biosynthetic protein FliR [Acetivibrio cellulolyticus CD2] gi|302592180|gb|EFL61909.1| flagellar biosynthetic protein FliR [Acetivibrio cellulolyticus CD2] Length = 261 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 109/231 (47%), Gaps = 2/231 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI R+ ++ P S + IP +++ F+ +++L+ + + + N N ++ Sbjct: 15 FLLIFIRMAGLFVIAPIFSRANIPTYLKIGFSFMLALILVNTISNQNIVIN--NIYEFAA 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G G + + G +I IG + + ++ + ++ I+ Sbjct: 73 LVIREFVVGITLGYVSYTIFNAIYIAGELIDMQIGFGVVNVIDPISNIQVSITSTFYFIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L + + HH + AL SY +P+GQ + + S + + F+I ++++P L Sbjct: 133 CMLVFILCNGHHILIRALFSSYEYVPLGQAVFGSGLQSRILEIFGGIFLIAFKIAAPMLT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ ++++G+++K VPQ+ ++ + P I LG + L++ + + Sbjct: 193 AILITDVALGVISKTVPQLNVFVVGMPLKIILGLAVMVLTMPLFISIVETL 243 >gi|66046671|ref|YP_236512.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae B728a] gi|63257378|gb|AAY38474.1| Flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae B728a] Length = 261 Score = 157 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 113/233 (48%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 15 WVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSA 74 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 75 LL--LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQF 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 133 FTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWVLASGLRLVL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+ Sbjct: 192 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQYQ 244 >gi|330899443|gb|EGH30862.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 258 Score = 157 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 113/233 (48%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 12 WVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWALASGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+ Sbjct: 189 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQYQ 241 >gi|221309515|ref|ZP_03591362.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. 168] gi|221313839|ref|ZP_03595644.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318762|ref|ZP_03600056.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. JH642] gi|221323034|ref|ZP_03604328.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. SMY] gi|255767371|ref|NP_389519.2| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. subtilis str. 168] gi|321315404|ref|YP_004207691.1| flagellar biosynthesis protein FliR [Bacillus subtilis BSn5] gi|239938629|sp|P35537|FLIR_BACSU RecName: Full=Flagellar biosynthetic protein fliR gi|225184998|emb|CAB13510.2| component of the flagellar export machinery [Bacillus subtilis subsp. subtilis str. 168] gi|320021678|gb|ADV96664.1| flagellar biosynthesis protein FliR [Bacillus subtilis BSn5] Length = 259 Score = 157 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 93/236 (39%), Gaps = 6/236 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P +P R+ FA +++ + + +Y Sbjct: 10 AFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTID---KPPSLEIDEHYM 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L E +G GL+ + +Q GS I +G ++ + + I Sbjct: 67 LLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIYT 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSS 187 + LL + ++ HH + + S+ I + Q F+I ++S+ Sbjct: 127 MALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQMSA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P I + + L + + +I + F Sbjct: 187 PVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNVF 242 >gi|212639549|ref|YP_002316069.1| flagellar biosynthesis protein FliR [Anoxybacillus flavithermus WK1] gi|212561029|gb|ACJ34084.1| Flagellar biosynthesis pathway, component FliR [Anoxybacillus flavithermus WK1] Length = 259 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 102/239 (42%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI RV S + +P S +P ++ FA S ++ L D + Y Sbjct: 12 TFLLIFARVASFFVTMPLFSYRNVPNVHKIGFAFFISWLMFFSL----DPKPLDIDGTYM 67 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ E+ +G + GL+ + +Q G I +G + + + + Sbjct: 68 MLLIKEVLVGLLIGLVAFIIMSAIQIAGGFIDFQMGFAIANVIDPQTGAQSPLMGQYLYT 127 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSP 188 I L L ++ HH + + SY IP+ ++FGN I V + Q F+I L+++ P Sbjct: 128 IALFFLLAVNGHHMLLDGIFYSYQFIPLDHLVSFGNEQIAEQVVRLFQAMFVIALQMAIP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++++G++ + VPQ+ I+ I P I + + + + F + F Sbjct: 188 IVGCLFLVDVALGIVARTVPQMNIFVIGLPVKIIVSFVLFVIVFSSMFAVTKQLFEFAF 246 >gi|90021815|ref|YP_527642.1| flagellar biosynthetic protein FliR [Saccharophagus degradans 2-40] gi|89951415|gb|ABD81430.1| flagellar biosynthetic protein FliR [Saccharophagus degradans 2-40] Length = 261 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ FL CR+G+ + +P L + +VRL A +++++P L + + Sbjct: 13 LLLQQYFLPFCRIGAMFLAMPILGSQLVSPRVRLGLAFIVTLMVVPMLGSIPKVSGLSVQ 72 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + E+ LG G +V G +I+ +GL + + + T ++ Sbjct: 73 TF--IYISQEILLGLAAGYCFQVAFQVFVLAGQLIAMKMGLGFASMNDPVNGVQTTAISQ 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ L ++ H + LV+S+ T P G + N N+ F L ++ Sbjct: 131 FYLMLVTLMFVSVNGHLVMINMLVESFVTFPPGGFIFSTNTMWKIANVGTWLFAAGLLMA 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P L + NI+ G++++ PQ+ I+ I P+ + G L + L + F G Sbjct: 191 LPVLTALLFINIAFGIMSRAAPQLNIFAIGFPFTLLCGLLMIWLGLVTFDSNFESVMDDG 250 Query: 247 F 247 F Sbjct: 251 F 251 >gi|118581842|ref|YP_903092.1| flagellar biosynthetic protein FliR [Pelobacter propionicus DSM 2379] gi|118504552|gb|ABL01035.1| flagellar biosynthetic protein FliR [Pelobacter propionicus DSM 2379] Length = 264 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 109/241 (45%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + ++ L++ R+ LP +P+Q+R+ MA S++ P L + Sbjct: 7 FPSQREIILFALVLGRMAGMFSALPVFGGKRLPLQIRVVAVMAMSLICFPLL-NVNAPNI 65 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 + + L + E+ +G + ++ ++F+G +I +G + M + Sbjct: 66 PDDTISLALLALREVMIGITLSFVTQIIFSAVEFSGQIIGMQMGFTMAAIMDPTHGTQSQ 125 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 ++ + ++ L + HH A+V S+ IP+G G I + F++ Sbjct: 126 VMSVMQSLLATLMFLCMSIHHLFIRAIVDSFHIIPLGVWHLNGEIITFLTRATADVFVLG 185 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +RL++P + ++ ++++G++ + PQ+ ++ IS P IG+G + L ++ + + S Sbjct: 186 VRLAAPVMVALLLTSVTLGIMARSFPQMNVFMISFPLNIGIGFIILGATLPMFFHVLEVS 245 Query: 243 F 243 F Sbjct: 246 F 246 >gi|302185377|ref|ZP_07262050.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae 642] Length = 258 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 113/233 (48%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 12 WVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQLFFHIFVVAGQIISTQMGMGFASMVDPTNGVSSATIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNN-FWELANGLGWVLSSGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+ Sbjct: 189 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQ 241 >gi|330814978|ref|YP_004358683.1| Flagellar biosynthetic protein FliR [Burkholderia gladioli BSR3] gi|327367371|gb|AEA58727.1| Flagellar biosynthetic protein FliR [Burkholderia gladioli BSR3] Length = 259 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 104/241 (43%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+ + + P + + +P +V++ + SI + P L F Sbjct: 11 VWLTAFLWPFVRILALVATAPLIGHASVPARVKIGVSALVSIAVAPALGPLPQATVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G I +GL + L Sbjct: 71 GIW--ILVNQFLIGAALGFTMQIVFAVVEAAGDYIGLQMGLGFASFFDPHSG-NTPMLGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ +LA D H Q+ ALV+S+ +PI L + F + L L+ Sbjct: 128 VLNAFAMLAFIAFDGHLQLIAALVQSFDIVPISSNLLRAAGWRIVAGAGINVFSMGLLLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P L+ +G L + L I ++ FSH F G Sbjct: 188 LPVVAALLISNLALGILNRAAPQIGIFQVGFPVLMLVGLLLVQLMIPNLMPFFSHLFDDG 247 Query: 247 F 247 + Sbjct: 248 Y 248 >gi|220925377|ref|YP_002500679.1| flagellar biosynthetic protein FliR [Methylobacterium nodulans ORS 2060] gi|219949984|gb|ACL60376.1| flagellar biosynthetic protein FliR [Methylobacterium nodulans ORS 2060] Length = 254 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 126/244 (51%), Gaps = 1/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M + + S L RVG+ IML+PG+ + + ++RL FA+ ++VL P + + Sbjct: 1 MNLLLPGLAASYLLTFARVGTLIMLMPGIGEAVVSPRLRLAFALLVALVLFPAVRPLLPQ 60 Query: 61 QNFVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + +++ E+ +G V GL +R LQ TG++I+ +GL ++ + + Sbjct: 61 PDGAGAGPRLIGVLIGEVAVGLVLGLSVRAVLAALQTTGTIIAQQLGLAYAMTVDPTAAG 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 + L + + ++G+ + D HH + SY +P G+ + + F Sbjct: 121 QQATLGTFLTLLGITLVLAADLHHLAIAGIRDSYALMPPVGVPATGDAADLVIRAVARGF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + +++S+PF+ F I+FN+ +G+L++L+PQ+ ++F++TP I +G + L +I +++ F Sbjct: 181 ALAVQISAPFIAFGILFNLGLGVLSRLMPQMQVFFVATPASILIGMMVLLATIGVVMGVF 240 Query: 240 SHSF 243 Sbjct: 241 VDDL 244 >gi|330953764|gb|EGH54024.1| flagellar biosynthesis protein FliR [Pseudomonas syringae Cit 7] gi|330972451|gb|EGH72517.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 258 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 113/233 (48%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q A Sbjct: 12 WVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQLFFHIFVVAGQIISTQMGMGFASMVDPTNGVSSATIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNN-FWELANGLGWVLASGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+ Sbjct: 189 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQ 241 >gi|302343744|ref|YP_003808273.1| flagellar biosynthetic protein FliR [Desulfarculus baarsii DSM 2075] gi|301640357|gb|ADK85679.1| flagellar biosynthetic protein FliR [Desulfarculus baarsii DSM 2075] Length = 258 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 1/234 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 M LI+ R + + LLP + IP V+ +MA ++ L P + L + Sbjct: 12 MHFLLILTRCSALVALLPFFGSANIPDTVKAGLSMALAVFLHPIVKIDPALFP-TGLDSF 70 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L EL +G + G +R+ +Q G + +G ++ + + + Sbjct: 71 LILAFGELMIGAILGFAVRLLFSAVQIMGHLAGFQMGFSVANVLDPMGGEQVSVIGQFCY 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 +I +L + + HH F A +S+ +P GQ +F M F + L+L +P Sbjct: 131 VIAILVFFAVGGHHWFFSAAAESFAIVPPGQFAFSRILFDQLTTMTADMFELALKLGAPV 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + ++++G+L K VPQ+ I + P IG+G FL L++ ++ SF Sbjct: 191 IGVLLAADVAMGVLAKTVPQMNILIVGMPLKIGVGLFFLALTMGFMIVTMGASF 244 >gi|85716546|ref|ZP_01047516.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] gi|85696547|gb|EAQ34435.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] Length = 256 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 1/232 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + L+ R+G+ +MLLPG +IP++V+L A+ ++++LP + + A Sbjct: 13 AAFMLVFARIGAMVMLLPGFGEGFIPVRVKLAIALLLTLIILPLHRTAYHVDT-QSIAPL 71 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + L++ E+ +G V G RV L GS+I+ +GL TS+ + + + + Sbjct: 72 TVLLVHEIIIGVVLGATARVTLAALHVAGSIIAQQLGLGFVTSVDPTQGQQGALMGNFLT 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+PF Sbjct: 132 LLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGAFKIGLQLSAPF 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L F +VFNI +G+L +L+PQ+ +YF+ P I +G + + ++ + Sbjct: 192 LVFGLVFNIGLGVLARLMPQMQVYFVGVPLSILIGFMIFAAVLASMMGTYMD 243 >gi|189426337|ref|YP_001953514.1| flagellar biosynthetic protein FliR [Geobacter lovleyi SZ] gi|189422596|gb|ACD96994.1| flagellar biosynthetic protein FliR [Geobacter lovleyi SZ] Length = 265 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 113/241 (46%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + + + LI+CR+G LP +P ++++ +A ++V LP L Sbjct: 8 LPSQSDVFLFALILCRIGGLFAALPVFGGKRLPTRIKIAAVLAITLVCLPVLK-ITPPPL 66 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 + LVM E+ +G + ++ ++F+G +I +G ++ + + S Sbjct: 67 PGDAFTLGLLVMREMLIGLTLAFITQIIFAAVEFSGQIIGLQMGFSISSVLDPSMGTQTQ 126 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 ++ + ++ L ++ HH A+V S+ IP+G + VN F++ Sbjct: 127 IMSVVQSLLATLFFLSLNIHHVFISAIVDSFTVIPLGGWKMSEALIHFLVNATSEVFILG 186 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +RL++P + ++ ++ +G++ + PQ+ ++ +S P IGLG + L +++ + + S Sbjct: 187 IRLAAPVMVALLLTSVVLGIMARAFPQMNVFMVSFPLNIGLGFMVLGMTLLLFFHVLELS 246 Query: 243 F 243 F Sbjct: 247 F 247 >gi|94314222|ref|YP_587431.1| flagellar biosynthetic protein FliR [Cupriavidus metallidurans CH34] gi|93358074|gb|ABF12162.1| flagellar biosynthetic protein FliR [Cupriavidus metallidurans CH34] Length = 261 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+ I P LS S IP ++++ A A SI++ P + + + + Sbjct: 11 GWIATFLWPMFRMLGLISSAPLLSESTIPRRLKILLAAALSIIISPTIGNIPTVPVYSLD 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +V+ E+ +G G +R+ +Q G VI +GL+ + + L+ Sbjct: 71 GLL--IVLNEVGIGLSMGFAMRLVFAAVQMAGEVIGLQMGLSFASFYDRAAGGQTMVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L +D H + AL+ S+ +PI G+ + F LS Sbjct: 129 FLNMVAMLLFLALDGHLMMLAALIDSFQGLPISGVPLSGHGWGVLARAGSMIFSAGTLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ PQ+ I+ + P + G L L L + + H G Sbjct: 189 LPMIAALLTMNLAMGILNRASPQLSIFAVGFPVTLLGGMLVLALVMPHMGAYVQHLIESG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|254433171|ref|ZP_05046679.1| flagellar biosynthetic protein FliR [Nitrosococcus oceani AFC27] gi|207089504|gb|EDZ66775.1| flagellar biosynthetic protein FliR [Nitrosococcus oceani AFC27] Length = 262 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 102/235 (43%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + CR+G+ +M +P +P+++RL A+A ++V+ P + T V Sbjct: 11 LISAYLWPFCRIGALLMAMPLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEGG 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LVM + +G L++++ G +++T +GL + M + +A + ++ L Sbjct: 71 L---LVMQQFLIGFAMALVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQL 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V L +S+ +P+G E F + ++ Sbjct: 128 YTVLITLVFLGLNGHLVVIQVLAESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + N++ G++++ PQ+ + I P + LG L ++ + Sbjct: 188 PAIGALSLVNLTFGVMSRAAPQLNPFSIGFPLTLILGFWVLLFTLPNAPSHLVNL 242 >gi|71735042|ref|YP_275526.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555595|gb|AAZ34806.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 258 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q Sbjct: 12 WVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDLSG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLFMNGHLVVLEVLVESFTTMPVGGGLLVNN-FWELANGLGWALSSGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+ Sbjct: 189 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQ 241 >gi|146341891|ref|YP_001206939.1| flagellar biosynthesis protein FliR [Bradyrhizobium sp. ORS278] gi|146194697|emb|CAL78722.1| Flagellar biosynthetic protein fliR [Bradyrhizobium sp. ORS278] Length = 255 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 1/233 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L R+ + +MLLPGL IP++++L A+ ++++LP + + + Sbjct: 15 FMLAFARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQAYQV-DLQALSPLVV 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ E+ +G V G RV LQ GSVI+ +GL T++ + + + + ++ Sbjct: 74 MMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGNFLTML 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G+ L+ D HH V AL SY G+ + G++ S F I L+LS+PFL Sbjct: 134 GVTLLFATDSHHLVIAALSDSYKIFAPGELVPSGDVASLATKAFAAAFKIGLQLSAPFLV 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 F +VFNI +G+L +L+PQ+ +YF+ P I +G L L + ++ F F Sbjct: 194 FGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFALVLTAMMGTFLGYFE 246 >gi|114046867|ref|YP_737417.1| flagellar biosynthesis protein FliR [Shewanella sp. MR-7] gi|113888309|gb|ABI42360.1| flagellar biosynthetic protein FliR [Shewanella sp. MR-7] Length = 265 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 96/239 (40%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + RV S +M++ + P +VRL A+A ++ + P L D + F A Sbjct: 11 TIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVAITLAIAPVLPPVKDAELFSLSA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + ++ TG +I L + + + + Sbjct: 71 VFITA--QQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + LV S+ T+PI + + S F L +S Sbjct: 129 FLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMFGAALTMSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F + Sbjct: 189 SAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEEVWASA 247 >gi|395392|emb|CAA52219.1| flagellar biosynthetic protein [Bacillus subtilis] Length = 259 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 94/236 (39%), Gaps = 6/236 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P +P R+ FA +++ + + +Y Sbjct: 10 AFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTID---KPPSLEIDEHYM 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L E +G GL+ + +Q GS I +G ++ + + I Sbjct: 67 LLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIYT 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSS 187 + LL + ++ HH + + S+ I + Q L F+I ++S+ Sbjct: 127 MALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEQFAYFIAKSLNAMFIIAFQMSA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P I + + L + + +I + F Sbjct: 187 PVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNVF 242 >gi|330876031|gb|EGH10180.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964681|gb|EGH64941.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. actinidiae str. M302091] Length = 258 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 111/233 (47%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q Sbjct: 12 WVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDLSG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLSMNGHLVVLEILVESFTTMPVGGGLLVNN-FWELANGLGWALSSGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+ Sbjct: 189 PAVTALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQ 241 >gi|83589640|ref|YP_429649.1| flagellar biosynthesis protein FliR [Moorella thermoacetica ATCC 39073] gi|83572554|gb|ABC19106.1| flagellar biosynthetic protein FliR [Moorella thermoacetica ATCC 39073] Length = 255 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 111/232 (47%), Gaps = 2/232 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R + + P + +P V+ +++LL D F + Y+ Sbjct: 10 FFLVLVRTTAFFVTAPFFGIRGVPTMVKAGLGFLVALLLL--PVLPADQPVFNSSWVYAL 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V+ E G G L + +Q G ++ +GL + T ++ + T + I+ Sbjct: 68 AVLNESLAGLALGYLASLIFSAIQMAGQLLDIHMGLAMATLFDPQNAASTTIMGQFFAIL 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 GLL + +D HH + AL +S+ +P+G GN+ + V + TF + L++++P + Sbjct: 128 GLLLFFQLDGHHTLLLALQESFRLLPLGGVHFDGNLLWAVVKLFAGTFALALQIAAPLIA 187 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ ++++ L+ + VPQ+ ++ + P +GLG L + + ++ FS+ F Sbjct: 188 VLLIADLALSLVARTVPQLNVFILGFPLKVGLGLLVMIALLPLLATVFSNIF 239 >gi|187925752|ref|YP_001897394.1| flagellar biosynthetic protein FliR [Burkholderia phytofirmans PsJN] gi|187716946|gb|ACD18170.1| flagellar biosynthetic protein FliR [Burkholderia phytofirmans PsJN] Length = 260 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 110/240 (45%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P L +P++V++ A +I++ P L + F Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQVTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G+ +++ + TG + +GL T + + L+S Sbjct: 71 GVW--IIVNQFLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDAQAASSSQVLSS 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +L VID H Q+ AL+ ++ ++P+ + + + N T F L LS Sbjct: 129 YMNTIAMLVFLVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGSTVFSAGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+S+G+LN+ PQI ++ I P + +G L L L + ++ F+ F G Sbjct: 189 LPVVAALLITNLSLGILNRAAPQIGVFQIGFPLTMLIGMLLLQLMVPNMIPFFTRLFEVG 248 >gi|307945651|ref|ZP_07660987.1| flagellar biosynthetic protein FliR [Roseibium sp. TrichSKD4] gi|307771524|gb|EFO30749.1| flagellar biosynthetic protein FliR [Roseibium sp. TrichSKD4] Length = 257 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 1/241 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I L+ R+G+ IML+P L + IP ++RL A+ ++VL P + + N A Sbjct: 11 ITAIFLLMFARIGTLIMLMPALGETSIPTRIRLTIALGITLVLYPVISGSYPAGLTDNPA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE-TPLNS 126 + E+ +G GL IR++T LQ G +++ GL +++ + T + Sbjct: 71 RLLVFMGGEMIIGFAVGLCIRLFTTTLQTAGVIMANQSGLAFAFGADLANGGQQGTLFGN 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++G+ ++ D H+ V AL S+ P G+ + G+ ++ N + F I LR+S Sbjct: 131 YLSMVGIAMVFATDSHYLVIAALHDSFTLFPPGELVPVGDFVTNATNTVAEVFSIALRMS 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 +PF+ +VF +GLLNKL+PQ+ I+FI+ P I +G L + + ++ + F Sbjct: 191 APFIVMGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIGFFLLMVLLSTLMAFYLDHFEGA 250 Query: 247 F 247 Sbjct: 251 L 251 >gi|332140594|ref|YP_004426332.1| flagellar biosynthesis protein FliR [Alteromonas macleodii str. 'Deep ecotype'] gi|327550616|gb|AEA97334.1| flagellar biosynthesis protein FliR [Alteromonas macleodii str. 'Deep ecotype'] Length = 259 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 101/239 (42%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L R+ + + GLS IP QVR + ++V++P + + ++N V+ Sbjct: 11 FLADMLLPFMRISGLFVAMIGLSAKSIPPQVRALLGIMLTLVIMPVVPPS-PIENLVSVG 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +V+ +L +G G + + G +I+ GL + + + + + Sbjct: 70 TFL-IVIQQLLIGIAIGFISMMVLNTFVLAGQIIAMQTGLGFASIVDPVNGINVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L W +D H + +V S+ PIG+ G F + F+ + LS Sbjct: 129 YLILATLLFWTLDGHLSMIQMIVMSFEAFPIGEAWWTGEQFRDIAHWGGWMFVSAITLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N++ G++ K PQ+ I+ I +G L + ++++ F + Sbjct: 189 APIVSLLIVNLAFGVMTKAAPQLNIFSIGFSIAQLMGLLIIWITLDNFTAHFETQWFRA 247 >gi|302872553|ref|YP_003841189.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor obsidiansis OB47] gi|302575412|gb|ADL43203.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor obsidiansis OB47] Length = 260 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + P IP ++ FA S++++ + + N Y Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSMIVVTTYNFSYSVP--TNVEEYIF 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E +G + G + + + G +I AIG + + + L + + + Sbjct: 73 VVIKEFIVGLLIGYISYMIFSAILLGGQIIDNAIGFGMANVIDPMSEIQVPLLGNFLYLY 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A+ SY +PIG +F+ F+I + +S P L Sbjct: 133 MLVMFFGTDAHHLLIRAIFYSYKLVPIGYGGFKTEFTWNFLRFFSELFLIGVEISLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ +I + +L++ VPQ+ ++ + P I +G L L + + Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGIPIKITIGFLVLVIIFPFM 236 >gi|220932507|ref|YP_002509415.1| flagellar biosynthetic protein FliR [Halothermothrix orenii H 168] gi|219993817|gb|ACL70420.1| flagellar biosynthetic protein FliR [Halothermothrix orenii H 168] Length = 259 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 96/236 (40%), Gaps = 1/236 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R ++ P P++V++ A+ + + LP + ++ Sbjct: 14 FLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQT-VELPQQTVGILL 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V+ E +G + G + + +Q G I +G + M + + I+ Sbjct: 73 DVIRESLIGFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAPVVGQFKNIM 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L I+ HH + L +S+ IP+ +F+ F+I +++ P + Sbjct: 133 AILVFLAINGHHLLLEGLYRSFQIIPLRGLTLGSEVFNLLFRTTGNMFIIAFKIALPVMG 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + ++ G L + VPQ+ I+ I P I +G + L LS+ + VY F F + Sbjct: 193 TLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFFQDLFSEFY 248 >gi|113969637|ref|YP_733430.1| flagellar biosynthesis protein FliR [Shewanella sp. MR-4] gi|113884321|gb|ABI38373.1| flagellar biosynthetic protein FliR [Shewanella sp. MR-4] Length = 265 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 96/239 (40%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + RV S +M++ + P +VRL A+A ++ + P L D + F A Sbjct: 11 TIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVAITLAIAPVLPPVKDAELFSLSA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + ++ TG +I L + + + + Sbjct: 71 VFITA--QQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + LV S+ T+PI + + + F L +S Sbjct: 129 FLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALAEWGSYMFGAALTMSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F + Sbjct: 189 SAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEEVWASA 247 >gi|39995533|ref|NP_951484.1| flagellar biosynthesis protein FliR [Geobacter sulfurreducens PCA] gi|39982296|gb|AAR33757.1| flagellar biosynthesis protein FliR [Geobacter sulfurreducens PCA] gi|298504534|gb|ADI83257.1| flagellar biogenesis protein FliR [Geobacter sulfurreducens KN400] Length = 264 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 111/235 (47%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L++ R+ +P +P ++ A ++V P + + + Q + Sbjct: 14 VAFFTLVMGRMAGIFAAIPIFGGRRVPTPIKALLVFAMTMVCFPIIKEKMP-QLPTDVLS 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G GLL + ++F G ++S IGL + T S + ++ ++ Sbjct: 73 LGFLMVQEVLVGVSLGLLSLIIFAAVEFAGQIVSVQIGLTIVTEFDPSQGGQLSIMSIIL 132 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L + HH ALV+SY +P+G G + V + F++ +RL++P Sbjct: 133 EMLATLLFLSLGMHHIFIGALVQSYDVLPLGAWHMSGALLQFIVTTIGEVFVLAVRLAAP 192 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + ++ +G++ + PQ+ ++F+S P IG+G + L LS+ + ++ F Sbjct: 193 VMVTLLATSVMLGIMARSFPQMNVFFVSMPLNIGIGFIVLGLSLPLFLHTVQGHF 247 >gi|258404719|ref|YP_003197461.1| flagellar biosynthetic protein FliR [Desulfohalobium retbaense DSM 5692] gi|257796946|gb|ACV67883.1| flagellar biosynthetic protein FliR [Desulfohalobium retbaense DSM 5692] Length = 260 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 1/233 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 S L RV + I +P LS P ++R A+ ++++ P + TI NF + Sbjct: 13 SFLLCFIRVAAIIGSMPVLSGGQTPARLRAGLALVLAVIIFPAVDGTIPDINFAPLRLFV 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L E+ LG + G + R+ L QF G+++ +G + ++ + Sbjct: 73 -LGSQEVLLGLMLGFIGRLLFLAAQFGGTILGFQMGFAAANILDPQSQQQIQLMSQFQNV 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L +D HH +L +S+ +P G L+ + S V M F++ L+L++P Sbjct: 132 LASLVFLAVDGHHVFLRSLARSFEVVPPGGGLHLQDAVPSMVAMTGEMFVLGLQLTAPIY 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 I+ + +G+++++ PQ+ + + P IG+ FL LS E IV F Sbjct: 192 VILILSDFILGIMSRIFPQLNAFMLKFPINIGVAFFFLGLSAEFIVSILISEF 244 >gi|121602553|ref|YP_989418.1| flagellar biosynthesis protein FliR [Bartonella bacilliformis KC583] gi|120614730|gb|ABM45331.1| flagellar biosynthetic protein FliR [Bartonella bacilliformis KC583] Length = 265 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 133/240 (55%), Gaps = 1/240 (0%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DL 60 ++ +++ L+ RVG+C+ML+PG+S IP+QVRL A++FS+++LP + D D Sbjct: 15 SVPLNQLVLLAMLVFARVGACLMLMPGVSSIRIPVQVRLFIAVSFSLIILPMVADFFKDF 74 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + A + + + E+ +G G++ VY LQF ++I+ ++G + Q + DS Sbjct: 75 GEKPDFALFVRALCSEMLIGVTFGVIAHVYLWALQFMATIIAMSMGYSGQPGHNVIDSTP 134 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET + L+ ++G++ + D H L+ SY + N + + L F+ Sbjct: 135 ETQIAHLLVLVGVMLFFASDLHMFAIRGLLASYDVVSPVFIPNPEAALIDYRDALSKAFL 194 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 LR+++PF+ + ++ NI++GL+NKL P IP+YFIS P+++ G L + I+ FS Sbjct: 195 TTLRIAAPFIVYAVLVNIAVGLVNKLTPNIPVYFISLPFVVAGGLFLLYFIMPEILNFFS 254 >gi|71277858|ref|YP_268256.1| flagellar biosynthesis protein FliR [Colwellia psychrerythraea 34H] gi|71143598|gb|AAZ24071.1| flagellar biosynthetic protein FliR [Colwellia psychrerythraea 34H] Length = 260 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 94/239 (39%), Gaps = 2/239 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M L R+ + IM + G S IP +V++ ++ +I ++P + + Sbjct: 12 MADFVLPFSRISALIMTMIGFSSKTIPGRVKVFLCISITIAVMPAIPPAS--VTNLMSLN 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L+ ++ +G + G + + G +I+ GL + + + + + Sbjct: 70 TAILLGQQMIIGVMLGFVTIMVVNTFTLAGQIIAMQSGLGFASLVDPASGMNVPAIGQFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ L WV+D H +V S+ T+PI E + V F L L+ Sbjct: 130 LILSSLLFWVMDGHLAYLQFIVASFDTLPIPTEHLSSIKYREVVEWGGWMFATALSLALA 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + ++ N S G++ + PQ+ I+ I P + G L + L+ F + Sbjct: 190 PITAMLLINFSFGIMTRAAPQLNIFAIGFPITMMAGLLIMWLTFGNFFTHFELQWQRAL 248 >gi|256059812|ref|ZP_05450007.1| flagellar biosynthesis protein FliR [Brucella neotomae 5K33] gi|261323792|ref|ZP_05962989.1| flagellar biosynthetic protein FliR [Brucella neotomae 5K33] gi|261299772|gb|EEY03269.1| flagellar biosynthetic protein FliR [Brucella neotomae 5K33] Length = 255 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 139/241 (57%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY TIP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVTIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTH 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|150019066|ref|YP_001311320.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium beijerinckii NCIMB 8052] gi|149905531|gb|ABR36364.1| flagellar biosynthetic protein FlhB [Clostridium beijerinckii NCIMB 8052] Length = 613 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 102/231 (44%), Gaps = 1/231 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++LFLI R+ S M + + P ++ F++ S ++ + D + + Sbjct: 7 FLALFLIFLRITSYFMAVQIFFPTGTPQIMQGVFSLILSFGIVAGI-DHSTVSAVNSSYM 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + E+ G + G + + ++ G + G ++ + + + T L +L Sbjct: 66 LVFYAISEIMSGLILGYITNLIFQVVKLAGEWMDIHAGFSMVSVLDPTTQTTSTLLGNLS 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I L +++D HH V LV+S IPIG+ + + + + F + ++++ P Sbjct: 126 YFISLAFFFIVDGHHVVINMLVESTKIIPIGKTIVYQETLMEVMKTIFDYFTLGVKIAIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + ++ ++ +GL+++ VP IPI + P LG + + + +++ Sbjct: 186 IVLIIVITDVCLGLISRTVPTIPIMILGMPIKNLLGLITYIILLPLMLKLI 236 >gi|239997096|ref|ZP_04717620.1| flagellar biosynthesis protein FliR [Alteromonas macleodii ATCC 27126] Length = 259 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 101/239 (42%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L R+ + + GLS IP QVR + +++++P + + ++N V+ Sbjct: 11 FLADMLLPFMRISGLFVAMIGLSAKSIPPQVRALLGIMLTLIIMPVVPPS-PIENLVDVG 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +V+ +L +G G + + G VI+ GL + + + + + Sbjct: 70 TFL-IVVQQLLIGIAIGFISMMVLNTFVLAGQVIAMQTGLGFASIVDPVNGINVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L W +D H + +V S+ PIG+ G F + F+ + LS Sbjct: 129 YLILATLLFWTLDGHLSMIQMIVMSFEAFPIGEAWWTGEQFRDIAHWAGWMFISAVTLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N++ G++ K PQ+ I+ I +G L + ++++ F + Sbjct: 189 APIVSLLIVNLAFGVMTKAAPQLNIFSIGFSIAQVMGLLIIWITLDNFTAHFETQWFRA 247 >gi|117919802|ref|YP_868994.1| flagellar biosynthesis protein FliR [Shewanella sp. ANA-3] gi|117612134|gb|ABK47588.1| flagellar biosynthetic protein FliR [Shewanella sp. ANA-3] Length = 265 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 95/239 (39%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + RV S +M++ + P +VRL A+ ++ + P L D + F A Sbjct: 11 TIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPVKDAELFSLSA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + ++ TG +I L + + + + Sbjct: 71 VFITA--QQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + LV S+ T+PI + + S F L +S Sbjct: 129 FLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMFGAALTMSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F + Sbjct: 189 SAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEEVWASA 247 >gi|167617385|ref|ZP_02386016.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis Bt4] Length = 260 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + L P P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAVEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +PI +L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|332284030|ref|YP_004415941.1| flagellar biosynthetic protein FliR [Pusillimonas sp. T7-7] gi|330427983|gb|AEC19317.1| flagellar biosynthetic protein FliR [Pusillimonas sp. T7-7] Length = 262 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 99/241 (41%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 M + R+ + I P L S IP++ ++ FA ++ + P L D+ Sbjct: 11 GWMNAFLWPFFRILALIGAAPLLGESSIPIRAKVGFAALVTVAIAPALDPMPDIPTASFA 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L ++ +G GL++R+ +Q G I +GL+ + + L Sbjct: 71 GLWIGL--QQVLIGMALGLVMRIVFAAVQTAGEFIGLQMGLSFASFFDPATGANTAVLAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ ++ L ++ H + +++S+ +P+ N + + + L+ Sbjct: 129 IMNVVATLLFLALNGHLMMLAGIMRSFDVLPVRVGGLDPNGWGVLFEWSSEVMVSGMMLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ Q+ ++ + P + G + L + + S+ F G Sbjct: 189 LPLIIVLLTINLALGILNRTAQQLSVFAVGFPISLMTGLVLLAVVLPQTGPFLSNLFQEG 248 Query: 247 F 247 + Sbjct: 249 Y 249 >gi|28869178|ref|NP_791797.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. tomato str. DC3000] gi|213967545|ref|ZP_03395693.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. tomato T1] gi|301382882|ref|ZP_07231300.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tomato Max13] gi|302061092|ref|ZP_07252633.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tomato K40] gi|302131292|ref|ZP_07257282.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852418|gb|AAO55492.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. tomato str. DC3000] gi|213927846|gb|EEB61393.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv. tomato T1] Length = 258 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 110/233 (47%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q Sbjct: 12 WVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDLSG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H LV+S+ T+P+G L N F N L LRL Sbjct: 130 FTMLVTLLFLSMNGHLVALEILVESFTTMPVGGGLLVNN-FWELANGLGWALSAGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+ Sbjct: 189 PAVTALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQ 241 >gi|172059102|ref|YP_001806754.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MC40-6] gi|171991619|gb|ACB62538.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MC40-6] Length = 260 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 111/241 (46%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P++V++ A ++V+ P L D+ F Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAP 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G G +++ ++ G I ++GL T + A + Sbjct: 71 GIW--IVVTQFLIGVALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +LA +D H QVF AL S+ T+P+ +L + + T F + L L+ Sbjct: 129 FLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|167579279|ref|ZP_02372153.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis TXDOH] Length = 260 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + L P P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +PI +L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|229591838|ref|YP_002873957.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens SBW25] gi|229363704|emb|CAY51086.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens SBW25] Length = 258 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 108/233 (46%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + R+ + +M +P + +P ++RL FA+A ++VL+P L + A Sbjct: 12 WVASFILPLFRITAMLMAMPVFGTTLVPRRIRLYFAVAITVVLVPGLPPMPPVNALDLSA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G + G ++++ G +IS +G+ + + ++ ++ + Sbjct: 72 LM--LIAEQVLIGTLLGFSLQLFFQAFVIAGQIISIQMGMGFASMVDPTNGVSAAVIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L ++ H F L +S+ T+P+G L N F V L L L Sbjct: 130 LTMLVTLLFLAMNGHLVAFEVLTESFTTLPVGSGLVV-NHFWEVVGRLGWVLGASLLLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + + I+ Q+ Sbjct: 189 PAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADILNQYQ 241 >gi|261313959|ref|ZP_05953156.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Brucella pinnipedialis M163/99/10] gi|261302985|gb|EEY06482.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Brucella pinnipedialis M163/99/10] Length = 255 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 130/223 (58%), Gaps = 1/223 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGEG 228 >gi|299131772|ref|ZP_07024967.1| flagellar biosynthetic protein FliR [Afipia sp. 1NLS2] gi|298591909|gb|EFI52109.1| flagellar biosynthetic protein FliR [Afipia sp. 1NLS2] Length = 259 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 121/237 (51%), Gaps = 1/237 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L+ R+G+ +MLLPG + +P+++RL A+ ++++LP + + + Sbjct: 10 ALAATFMLVFARIGAMMMLLPGFGEANVPVRLRLGIALMLTLIMLPLHRAAYHV-DLSSM 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L++ E+ +G V G R L GS+I+ +GL T++ + + + Sbjct: 69 TSVMVLMVHEIIVGVVLGATARFTLAALSVAGSIIAQQVGLGFVTAVDPTQDQQSVIVAN 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+G+ ++ D H+ V AL SY G+ + G++ + F I ++LS Sbjct: 129 FLTILGIALIFATDTHYLVLAALSDSYTLFSPGELMPSGDVAALATKAFTVAFKIGVQLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +PF+ F +VFN+ +G+L +++PQ+ +YF+ P I G L L + + ++ F F Sbjct: 189 APFIIFGLVFNLGLGMLARMMPQMQVYFVGVPLSILAGFLLLGVVLVAVMGTFLTYF 245 >gi|325288791|ref|YP_004264972.1| flagellar biosynthetic protein FliR [Syntrophobotulus glycolicus DSM 8271] gi|324964192|gb|ADY54971.1| flagellar biosynthetic protein FliR [Syntrophobotulus glycolicus DSM 8271] Length = 259 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + LI CR +M+ P +P V+L AMA S+VL P + ++ +Q V+ Sbjct: 11 LTLFLLIFCRWAGMVMIAPVFGARGVPNLVKLGLAMALSVVLYPTVL-SMTVQVPVDTLL 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y L++ E+ +G V GL+I + T +Q G +I IG L ++ + + + + Sbjct: 70 YIGLIIKEVTVGLVIGLVINLLTSVMQTAGELIDYQIGFTLGNTIDPINGMQSPMTGNFL 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + L I+ HH + A+VKSY IP+ + + ++ ++ + +++ P Sbjct: 130 MVLTTMLLLAINAHHLIIAAMVKSYSYIPVNTGILPKG-MTFYIQIVGQVIALGAQIAMP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + ++ +GLL+K VPQ+ I+ + P I G L LSI + S+ Sbjct: 189 IFGALFLADVGVGLLSKTVPQLNIFSVIFPVKIIFGLTLLFLSIPYLGSTVSNL 242 >gi|237653574|ref|YP_002889888.1| flagellar biosynthetic protein FliR [Thauera sp. MZ1T] gi|237624821|gb|ACR01511.1| flagellar biosynthetic protein FliR [Thauera sp. MZ1T] Length = 265 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 95/242 (39%), Gaps = 2/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + +L + R+ P S + +++RL + ++ +LP L + Sbjct: 10 DAWLAALMFPLGRLLGLFASAPVFSNRGVSVRIRLAIGLGVAMAVLPVLPPMPQVPP--G 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + ++ +G G ++R+ + G++I +GL+ L+ Sbjct: 68 GGLGLAIFAQQILIGIAIGFVMRIVFAAVDMAGALIGMQMGLSFAVFFDPDAGGQTAVLS 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ L ID H + LV+S+ +P+ + ++ T F L L Sbjct: 128 DFLNLLATLIFLAIDGHLLMIDLLVRSFEWLPVATDAVDAGGWAFLARSGITVFSAGLLL 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P + +V NI++G+L + PQ+ ++ + P + G + + L + F Sbjct: 188 SLPVIAVLLVANIALGVLTRAAPQLNLFAVGFPITLTAGFIGVLLIMSNFAPVLQSLFER 247 Query: 246 GF 247 + Sbjct: 248 SY 249 >gi|152980679|ref|YP_001353119.1| FliR component of the flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] gi|151280756|gb|ABR89166.1| FliR component of the flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] Length = 263 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 98/239 (41%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + + R+ I + P +P +V++ + ++++ P + L + Sbjct: 12 WIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPAMPALDPMSLQG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ +L +G G +R+ G++ G +I +GL + + ++ Sbjct: 72 LL--ILAQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTRARSSAISQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L+ + H V L +S+ +PI V F ++LS Sbjct: 130 LALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRIFSAGVQLSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ NI++G+L + PQ+ I+ I P IG+G + + + + ++ + G Sbjct: 190 PIVAALLITNIALGILTRAAPQLNIFGIGFPITIGVGFIMIGIVLPYLMNPIINLMQEG 248 >gi|74317630|ref|YP_315370.1| flagellar biosynthesis protein FliR [Thiobacillus denitrificans ATCC 25259] gi|74057125|gb|AAZ97565.1| flagellar biosynthesis protein FliR [Thiobacillus denitrificans ATCC 25259] Length = 262 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 105/241 (43%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + ++S + R+ +M+ P +P +V++ + +++ P L + Sbjct: 11 VWLISFIWPLTRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPPMPAVGLGSWH 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G ++R+ ++ G +I +GL + + L Sbjct: 71 GLF--ILVQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSAGQTLVLAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ +L + ++ H + LV+S+ +PI E F + T F + L+L+ Sbjct: 129 FFNMLAVLLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTIFSLGLQLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+L + PQ+ I+ I P +G+G + L +++ QF G Sbjct: 189 LPLIAILLMTNLTLGILTRSAPQLNIFAIGFPITLGVGLIMLDVTLPYFAPQFEQLIASG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|332994109|gb|AEF04164.1| flagellar biosynthesis protein FliR [Alteromonas sp. SN2] Length = 259 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 97/239 (40%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L L R+ + + GLS IP QVR + +++++P + + + Sbjct: 11 FLADLMLPFMRISGLFVAMIGLSAQSIPPQVRALLGIMLTLIIMPVVPPA--PVDDLVNL 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + +L +G G + + G +I+ GL + + + + + Sbjct: 69 GTFILGIQQLLIGVAIGFVSMMVLNTFVLAGQIIAMQTGLGFASIVDPVNGINVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L W +D H + + +V S+ PIG+ G F + F+ + LS Sbjct: 129 YLILATLLFWTLDGHLAMIHMIVLSFHAFPIGEAWWTGEQFREIAHWGGWMFVSAITLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N++ G++ K PQ+ I+ I +G L + ++++ F +L Sbjct: 189 APIVSLLIVNLAFGVMTKAAPQLNIFSIGFSIAQVMGLLIIWITLDNFTAHFETQWLRA 247 >gi|205373391|ref|ZP_03226195.1| flagellar biosynthesis protein FliR [Bacillus coahuilensis m4-4] Length = 258 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 6/238 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ RV S + +P S IP Q RL S +L ++ +++ V Y Sbjct: 11 YLLILMRVASFFVTMPLFSYRTIPAQHRLGL----SAILAFLMYYSVEADPLVIDGLYFL 66 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E +G + G + +Q G I +G + + + + Sbjct: 67 LILKEAMVGLLIGFAAYMIISAIQIAGGFIDFQMGFAIANVVDPQTGMQSPITGQYLYTF 126 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSPF 189 LL L ++ HH + + SY IPI L F N I F+I ++S+P Sbjct: 127 ALLLLLSVNGHHIMLDGIFHSYQFIPIDSMLPFENESIVLFITTAFSRVFVIAFQISAPV 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + +I++G++ + VPQ+ I+ + P I + + L L + ++ +F Y F Sbjct: 187 VATLFLVDIALGIVARTVPQLNIFVVGFPIKIAVSFIILILVMGSMMIVIQQTFEYMF 244 >gi|23500846|ref|NP_700286.1| flagellar biosynthesis protein FliR [Brucella suis 1330] gi|161621174|ref|YP_001595060.1| flagellar biosynthesis protein FliR [Brucella canis ATCC 23365] gi|254699255|ref|ZP_05161083.1| flagellar biosynthesis protein FliR [Brucella suis bv. 5 str. 513] gi|254702375|ref|ZP_05164203.1| flagellar biosynthesis protein FliR [Brucella suis bv. 3 str. 686] gi|254711811|ref|ZP_05173622.1| flagellar biosynthesis protein FliR [Brucella ceti M644/93/1] gi|254714879|ref|ZP_05176690.1| flagellar biosynthesis protein FliR [Brucella ceti M13/05/1] gi|256015890|ref|YP_003105899.1| flagellar biosynthesis protein FliR [Brucella microti CCM 4915] gi|260568722|ref|ZP_05839191.1| flagellar biosynthesis protein FliR [Brucella suis bv. 4 str. 40] gi|261216568|ref|ZP_05930849.1| flagellar biosynthetic protein FliR [Brucella ceti M13/05/1] gi|261319439|ref|ZP_05958636.1| flagellar biosynthetic protein FliR [Brucella ceti M644/93/1] gi|261749694|ref|ZP_05993403.1| flagellar biosynthetic protein FliR [Brucella suis bv. 5 str. 513] gi|261752938|ref|ZP_05996647.1| flagellar biosynthetic protein FliR [Brucella suis bv. 3 str. 686] gi|23464510|gb|AAN34291.1| flagellar biosynthesis protein FliR, putative [Brucella suis 1330] gi|161337985|gb|ABX64289.1| flagellar biosynthetic protein FliR [Brucella canis ATCC 23365] gi|255998550|gb|ACU50237.1| flagellar biosynthesis protein FliR [Brucella microti CCM 4915] gi|260155387|gb|EEW90468.1| flagellar biosynthesis protein FliR [Brucella suis bv. 4 str. 40] gi|260921657|gb|EEX88225.1| flagellar biosynthetic protein FliR [Brucella ceti M13/05/1] gi|261292129|gb|EEX95625.1| flagellar biosynthetic protein FliR [Brucella ceti M644/93/1] gi|261739447|gb|EEY27373.1| flagellar biosynthetic protein FliR [Brucella suis bv. 5 str. 513] gi|261742691|gb|EEY30617.1| flagellar biosynthetic protein FliR [Brucella suis bv. 3 str. 686] Length = 255 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 138/241 (57%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTH 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|296330852|ref|ZP_06873327.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674370|ref|YP_003866042.1| flagellar export machinery protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151857|gb|EFG92731.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412614|gb|ADM37733.1| component of the flagellar export machinery [Bacillus subtilis subsp. spizizenii str. W23] Length = 259 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 92/236 (38%), Gaps = 6/236 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P +P R+ FA +++ + + Y Sbjct: 10 AFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTID---KPPSLEIDGQYM 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L E +G GL+ + +Q GS I +G ++ + + I Sbjct: 67 LLTFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIYT 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSS 187 + LL + ++ HH + + S+ I + Q F+I ++S+ Sbjct: 127 MALLFMLSVNAHHLLLDGIFYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQMSA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ + F Sbjct: 187 PVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAISFIMLIVCMSVMFVVVRNVF 242 >gi|306845411|ref|ZP_07477985.1| flagellar biosynthetic protein FliR [Brucella sp. BO1] gi|306274154|gb|EFM55970.1| flagellar biosynthetic protein FliR [Brucella sp. BO1] Length = 255 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 137/241 (56%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L+ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMAGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTH 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|170698075|ref|ZP_02889156.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria IOP40-10] gi|170137036|gb|EDT05283.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria IOP40-10] Length = 260 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 112/241 (46%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P++V++ A ++V+ P L D+ F + Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G G +++ ++ G I ++GL T + A + Sbjct: 71 GIW--IVVTQFLIGVALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +LA +D H QVF AL S+ T+P+ +L + + T F + L L+ Sbjct: 129 FLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|302389678|ref|YP_003825499.1| flagellar biosynthetic protein FliR [Thermosediminibacter oceani DSM 16646] gi|302200306|gb|ADL07876.1| flagellar biosynthetic protein FliR [Thermosediminibacter oceani DSM 16646] Length = 254 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 102/242 (42%), Gaps = 3/242 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E I+++ L+ R+ +L P P+Q RL + +++L P + + N Sbjct: 2 EFIIVNFLLVFFRILGFFILTPVFGRREFPVQGRLGVSALIAVILYPVVN---KIPLPDN 58 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L + E +G G + V + G +I +G + + + + Sbjct: 59 LWDTVILFIRETAVGLSIGFITFVVFSAVYICGEIIDLQMGFGIVNVIDPQTNAQIPVMG 118 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + I+ +L I+ HH + AL+KSY +P+G + + F +++ Sbjct: 119 NFFYILTILIFLSINGHHVLLNALMKSYDILPLGGAGLHDSFLEGMLKSFFEMFAAGVKM 178 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P + + + ++G++ + VPQ+ ++ + P+ I +G + L +++ + V F Sbjct: 179 SIPVVAATFLADFALGVIARTVPQMNVFIVGLPFKIIIGFIALIIALPMYVLALDVLFSG 238 Query: 246 GF 247 + Sbjct: 239 SY 240 >gi|308048764|ref|YP_003912330.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799] gi|307630954|gb|ADN75256.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799] Length = 261 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 97/239 (40%), Gaps = 3/239 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S+ + R+ + IM++ + S +P +VRL ++ + + P L ++ Sbjct: 11 WLRSVLWPLFRISAMIMVMVTIGGSSVPARVRLLLSVMITAAVAPILPAPPPVELLSAEG 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + + G +I L + + S+ + Sbjct: 71 FLISA--QQVVIGIAIGFVSVLVLNTFVLAGQIIGMQTSLGFASMVDPSNGQQVPLVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L + +D H + LV S+ T+PIG+ L+ + V F L LS Sbjct: 129 YLLLSTLLFFGVDGHLLMIRMLVASFETLPIGEGLSPSG-LDAIVKFGGLMFASALTLSL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 ++ N S G++ + PQ+ I+ I P + G L L L++ ++ F + G Sbjct: 188 SAATALLLINFSFGVMTRAAPQLNIFAIGFPITMLSGLLILWLTLGGVLSHFYSVWDAG 246 >gi|167900655|ref|ZP_02487860.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei NCTC 13177] Length = 260 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 105/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + + P P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +P+ +L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFKLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|225628421|ref|ZP_03786455.1| flagellar biosynthetic protein FliR [Brucella ceti str. Cudo] gi|254711211|ref|ZP_05173022.1| flagellar biosynthesis protein FliR [Brucella pinnipedialis B2/94] gi|256030160|ref|ZP_05443774.1| flagellar biosynthesis protein FliR [Brucella pinnipedialis M292/94/1] gi|256158339|ref|ZP_05456243.1| flagellar biosynthesis protein FliR [Brucella ceti M490/95/1] gi|256252727|ref|ZP_05458263.1| flagellar biosynthesis protein FliR [Brucella ceti B1/94] gi|260166788|ref|ZP_05753599.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99] gi|261219805|ref|ZP_05934086.1| flagellar biosynthetic protein FliR [Brucella ceti B1/94] gi|261318802|ref|ZP_05957999.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis B2/94] gi|261756165|ref|ZP_05999874.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99] gi|265987191|ref|ZP_06099748.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis M292/94/1] gi|265996854|ref|ZP_06109411.1| flagellar biosynthetic protein FliR [Brucella ceti M490/95/1] gi|225616267|gb|EEH13315.1| flagellar biosynthetic protein FliR [Brucella ceti str. Cudo] gi|260918389|gb|EEX85042.1| flagellar biosynthetic protein FliR [Brucella ceti B1/94] gi|261298025|gb|EEY01522.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis B2/94] gi|261736149|gb|EEY24145.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99] gi|262551151|gb|EEZ07312.1| flagellar biosynthetic protein FliR [Brucella ceti M490/95/1] gi|264659388|gb|EEZ29649.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis M292/94/1] Length = 255 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 138/241 (57%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTH 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|126442304|ref|YP_001057089.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 668] gi|126455304|ref|YP_001064319.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1106a] gi|134281514|ref|ZP_01768222.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305] gi|167717399|ref|ZP_02400635.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei DM98] gi|167813517|ref|ZP_02445197.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 91] gi|167843672|ref|ZP_02469180.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei B7210] gi|167892143|ref|ZP_02479545.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 7894] gi|167916914|ref|ZP_02504005.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei BCC215] gi|237814427|ref|YP_002898878.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei MSHR346] gi|242317745|ref|ZP_04816761.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1106b] gi|254194718|ref|ZP_04901149.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei S13] gi|254298635|ref|ZP_04966086.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 406e] gi|126221797|gb|ABN85303.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 668] gi|126228946|gb|ABN92486.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1106a] gi|134247181|gb|EBA47267.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305] gi|157808738|gb|EDO85908.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 406e] gi|169651468|gb|EDS84161.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei S13] gi|237506029|gb|ACQ98347.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei MSHR346] gi|242140984|gb|EES27386.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1106b] Length = 260 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 105/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + + P P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +P+ +L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|53717671|ref|YP_106657.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243] gi|76810974|ref|YP_331662.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710b] gi|167908875|ref|ZP_02495966.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 112] gi|254258615|ref|ZP_04949669.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710a] gi|52208085|emb|CAH34015.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243] gi|76580427|gb|ABA49902.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710b] gi|254217304|gb|EET06688.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710a] Length = 260 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 104/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + + P P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPIPVATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +P+ L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|300113615|ref|YP_003760190.1| flagellar biosynthetic protein FliR [Nitrosococcus watsonii C-113] gi|299539552|gb|ADJ27869.1| flagellar biosynthetic protein FliR [Nitrosococcus watsonii C-113] Length = 262 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 102/235 (43%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + CR+G+ +M +P +P+++RL A+A ++V+ P + T V Sbjct: 11 LISAYLWPFCRIGALLMAMPLFGSKVVPVRIRLMLALALTVVIAPVIPATSVAALSVEGG 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LVM + +G L++++ G +++T +GL + M + +A + ++ L Sbjct: 71 L---LVMQQFLIGLAMTLVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMISQL 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L ++ H V L +S+ +P+G E F + ++ Sbjct: 128 YTILITLVFLGLNGHLVVIQVLAESFYILPLGVEGASLGSFWQLAGGGSWMLAGSVLIAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + N++ G++++ PQ+ + I P + LG L ++ + Sbjct: 188 PAIGALSLVNLTFGVMSRAAPQLNPFSIGFPLTLLLGFWVLLFTLPNAPSHLVNL 242 >gi|171316885|ref|ZP_02906094.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MEX-5] gi|171097966|gb|EDT42784.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MEX-5] Length = 260 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P++V++ A ++V+ P L D+ F + Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G GL +++ ++ G I ++GL T + A + Sbjct: 71 GIW--IVVTQFLIGVALGLTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +LA +D H QVF AL S+ T+P+ +L + + T F + L L+ Sbjct: 129 FLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|312962261|ref|ZP_07776753.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens WH6] gi|311283598|gb|EFQ62187.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens WH6] Length = 261 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 107/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + RV + +M +P + +P ++RL FA+A ++V++P L + A Sbjct: 15 WVASFILPLFRVTAMLMAMPVFGTTLVPRRIRLYFAVAITVVIVPGLPPMPAVNALDLSA 74 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G + G + ++ G +IS +G+ + + ++ ++ + Sbjct: 75 LM--LIAEQVLIGAMLGFSLSLFFQAFVIAGQIISIQMGMGFASMVDPTNGVSAAVIGQF 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L ++ H F L +S+ T+P+G L N F V L L L Sbjct: 133 LTMLVTLLFLAMNGHLVAFEVLTESFTTLPVGSGLVV-NHFWEVVGRLGWVLGASLLLVL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + + I+ Q+ Sbjct: 192 PAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMWIFWVGMADILNQYQ 244 >gi|27380921|ref|NP_772450.1| flagellar biosynthesis protein FliR [Bradyrhizobium japonicum USDA 110] gi|27354087|dbj|BAC51075.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 256 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 1/238 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L+ RVG+ +MLLPGL + IP +V+L A+ ++++LP + + + Sbjct: 10 ALAAAFMLVFARVGAMVMLLPGLGETNIPTRVKLSIALLLTLIILPLHRSAYHV-DMGSL 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L++ E+ +G V G RV LQ GSVI+ +GL TS+ + + + Sbjct: 69 APLLVLMLHEIAIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTSVDPTQGQQGVLVGN 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++G+ L+ D HH V AL SY G+ ++ G++ S F + L+LS Sbjct: 129 FLTMLGVTLLFATDSHHLVIAALNDSYAIFSPGETVSSGDVASLATRAFAAAFRLGLQLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PFL F +VFNI +G+L +L+PQ+ +YF+ P I G L L + + ++ F F+ Sbjct: 189 GPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFAGFLVLAVVLTAMMGTFLDYFI 246 >gi|115350083|ref|YP_771922.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria AMMD] gi|115280071|gb|ABI85588.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria AMMD] Length = 260 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 111/241 (46%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P++V++ A ++V+ P L D+ F Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAP 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G G +++ ++ G I ++GL T + A + Sbjct: 71 GIW--IVVTQFLIGIALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +LA +D H QVF AL S+ T+P+ +L + + T F + L L+ Sbjct: 129 FLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|167560943|ref|ZP_02353859.1| flagellar biosynthetic protein FliR [Burkholderia oklahomensis EO147] gi|167568202|ref|ZP_02361076.1| flagellar biosynthetic protein FliR [Burkholderia oklahomensis C6786] Length = 260 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P P++V++ A ++V+ P L + F + Sbjct: 11 GWLTAFLWPFVRMLALVATAPVTGHRATPVRVKIGLAGFMALVVAPTLGPMPVVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHASGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +LA D H QVF ALV S+ +PI L + + V F + L L+ Sbjct: 129 FLNAIAILAFLAFDGHLQVFAALVDSFRLVPISAGLLRAPGWQTIVAFGAAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L +V F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLVPFVGRLFDTG 248 >gi|153011500|ref|YP_001372714.1| flagellar biosynthesis protein FliR [Ochrobactrum anthropi ATCC 49188] gi|151563388|gb|ABS16885.1| flagellar biosynthetic protein FliR [Ochrobactrum anthropi ATCC 49188] Length = 255 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 137/241 (56%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQ 61 + I+++ L CR+G+C+ML+PGLS + IP+QVRL A+A S +LP + + + Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGLSSARIPLQVRLYIALACSFAVLPLVLQRIVTVV 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + +L+ E+F+G V G+L +Y LQF S ++ ++G + + I++S + Sbjct: 66 DAGQPWTLFRLMASEMFVGAVIGILAHIYFWALQFMASTMAVSVGYSGSPADAITESEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L ++ D H ++F AL+ SY IP+ + F + L F+ Sbjct: 126 ATLATIVTFSALFLFFITDMHLEIFRALLNSYVAIPVDGQFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YF+S P+++G G L + + ++ F++ Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPTIPVYFVSMPFVLGGGLLVVYFILPELLRFFTN 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|83721282|ref|YP_440592.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis E264] gi|83655107|gb|ABC39170.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis E264] Length = 260 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 104/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + L P P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAVEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF LV S+ +PI +L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAVLVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|53724241|ref|YP_104208.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 23344] gi|67641566|ref|ZP_00440342.1| flagellar biosynthetic protein FliR [Burkholderia mallei GB8 horse 4] gi|121598912|ref|YP_994548.1| flagellar biosynthetic protein FliR [Burkholderia mallei SAVP1] gi|124384712|ref|YP_001027836.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10229] gi|126448436|ref|YP_001082216.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10247] gi|167001621|ref|ZP_02267415.1| flagellar biosynthetic protein FliR [Burkholderia mallei PRL-20] gi|254175309|ref|ZP_04881970.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 10399] gi|254206623|ref|ZP_04912974.1| flagellar biosynthetic protein FliR [Burkholderia mallei JHU] gi|254357356|ref|ZP_04973630.1| flagellar biosynthetic protein FliR [Burkholderia mallei 2002721280] gi|52427664|gb|AAU48257.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 23344] gi|121227722|gb|ABM50240.1| flagellar biosynthetic protein FliR [Burkholderia mallei SAVP1] gi|124292732|gb|ABN02001.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10229] gi|126241306|gb|ABO04399.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10247] gi|147752165|gb|EDK59231.1| flagellar biosynthetic protein FliR [Burkholderia mallei JHU] gi|148026420|gb|EDK84505.1| flagellar biosynthetic protein FliR [Burkholderia mallei 2002721280] gi|160696354|gb|EDP86324.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 10399] gi|238522519|gb|EEP85963.1| flagellar biosynthetic protein FliR [Burkholderia mallei GB8 horse 4] gi|243062631|gb|EES44817.1| flagellar biosynthetic protein FliR [Burkholderia mallei PRL-20] Length = 260 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 104/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + + P P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +P+ L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|253688964|ref|YP_003018154.1| flagellar biosynthetic protein FliR [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755542|gb|ACT13618.1| flagellar biosynthetic protein FliR [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 261 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 101/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F R+ + I P + I +V++ + ++++ P+L V Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGVLITLLVAPYLPLNTTPIFSVAGI 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G GL +++ ++ G +I +GL T + + Sbjct: 72 W---LLIQQVLIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVIARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ +L D H + L S+ T+PI + F + F+ L L+ Sbjct: 129 LNILAILLFLTFDGHLWMISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ I+ + P + +G + L L I +I H F F Sbjct: 189 PIITLLLTINLALGMLNRVAPQLSIFVVGFPITLTVGIMTLGLLIPLIPPFAEHLFSEVF 248 >gi|118588697|ref|ZP_01546105.1| flagellar biosynthesis protein R [Stappia aggregata IAM 12614] gi|118438683|gb|EAV45316.1| flagellar biosynthesis protein R [Stappia aggregata IAM 12614] Length = 257 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 1/241 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L+ R+G+ +MLLP L S IP + RL A+A ++VL P ++ N Sbjct: 11 VATIFMLMFARLGTMVMLLPALGESTIPTRFRLTIALALTMVLYPVGSQYYPVEVTSNTY 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NS 126 L+ E+ +G GL ++ T LQ G +++ GL ++ + L + Sbjct: 71 RMIALLFGEVAIGLGIGLCAKMITSVLQIAGMIMANQSGLAFALGTDFANQGQQGALFGN 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+G+ ++V D H+ V AL S+ P G G+ + + F I +R+S Sbjct: 131 FLSILGITLVFVSDSHYLVIAALHDSFMIFPPGLAPPVGDFSQNATETVAHVFSIAVRMS 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 +PFL +VF +GLLNKL+PQ+ I+FI+ P I +G L + I ++ + F Sbjct: 191 APFLVVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIGLFMLMVLITTLMMFYLDHFQEA 250 Query: 247 F 247 Sbjct: 251 L 251 >gi|217424090|ref|ZP_03455590.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 576] gi|254184097|ref|ZP_04890688.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1655] gi|184214629|gb|EDU11672.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1655] gi|217393153|gb|EEC33175.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 576] Length = 260 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 106/240 (44%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + + P S P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTSHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +P+ +L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|78064696|ref|YP_367465.1| flagellar biosynthesis protein FliR [Burkholderia sp. 383] gi|77965441|gb|ABB06821.1| Flagellar biosynthesis protein FliR [Burkholderia sp. 383] Length = 260 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 112/241 (46%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P++V++ A ++V+ P L D+ F + Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGLAAFMALVVAPTLGAMPDVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G I ++GL T S A + Sbjct: 71 GIW--ILVTQFLIGAAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHTSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA +D H QVF AL S+ ++P+ +L + + T F + L L+ Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALTASFQSLPVSADLLHAPGWRTLAGFGTTVFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P + +G L + L I +V +H F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQIGFPVTMLVGLLLVQLMIPNLVPFVAHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|161523218|ref|YP_001578230.1| flagellar biosynthetic protein FliR [Burkholderia multivorans ATCC 17616] gi|189348925|ref|YP_001944553.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC 17616] gi|221214542|ref|ZP_03587512.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD1] gi|160340647|gb|ABX13733.1| flagellar biosynthetic protein FliR [Burkholderia multivorans ATCC 17616] gi|189332947|dbj|BAG42017.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC 17616] gi|221165432|gb|EED97908.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD1] Length = 260 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 107/241 (44%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P +V++ A ++++ P L + F Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHASVPARVKIGVAAFMALIVAPTLGPMPAVTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G G +++ ++ G I ++GL T S A + Sbjct: 71 GIW--IVVTQFLIGTAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA +D H QV AL S+ ++P+ +L + + T F + L L+ Sbjct: 129 FLNAVAMLAFLAVDGHLQVLAALTASFQSLPVSADLLHAPGWRTLATFGATVFGMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ + P + +G L + L + +V S F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|170694402|ref|ZP_02885556.1| flagellar biosynthetic protein FliR [Burkholderia graminis C4D1M] gi|170140825|gb|EDT08999.1| flagellar biosynthetic protein FliR [Burkholderia graminis C4D1M] Length = 260 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 109/240 (45%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P L +P++V++ A +I++ P L + F Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPLRVKIGLAAFVTIIVAPTLGALPQVTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G+ +++ + TG + +GL T S + L++ Sbjct: 71 GVW--IIVNQFLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDAQASSSSQVLST 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +L VID H Q+ AL+ ++ T+P+ + + + N T F L LS Sbjct: 129 YMYTIAMLVFLVIDGHLQMISALLATFNTLPVSANILGSPGWRTLANFGSTIFSAGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P + +G L L L ++ F+ F G Sbjct: 189 LPVVAALLITNLALGILNRAAPQIGVFQIGFPLTMLIGMLLLQLMTPNMIPFFARLFTVG 248 >gi|167822059|ref|ZP_02453530.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 9] gi|226193326|ref|ZP_03788936.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei Pakistan 9] gi|225934926|gb|EEH30903.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei Pakistan 9] Length = 260 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 104/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + + P P++V++ A ++V+ P L F + Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +P+ L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHVQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248 >gi|83647844|ref|YP_436279.1| flagellar biosynthesis protein FliR [Hahella chejuensis KCTC 2396] gi|83635887|gb|ABC31854.1| Flagellar biosynthesis pathway, component FliR [Hahella chejuensis KCTC 2396] Length = 261 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 105/228 (46%), Gaps = 2/228 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + R+ S +M P L +P +VRL ++ +I+++P L ++ + + Sbjct: 17 LWPLFRISSFMMTTPILGTQIVPARVRLALSLLMTILIVPSLPPVPEVDPLSVNS--VAI 74 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ ++ +G G + + TG +++ +GL + + ++ + T L+ ++ Sbjct: 75 IIQQVLIGLAMGFAVLLLFQLFVVTGQIVAMNMGLGFASMVDPTNGITVTALSQFYLMLV 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L + H +F A+V+S+ +PI + + + + F L ++ P + Sbjct: 135 TLLFLSMGGHLVMFEAVVESFRFLPISAQEVDVWSWWYLASRISWMFASALMIALPAVTA 194 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NIS G++ + PQ+ I+ I P + G + +SI I+ QF+ Sbjct: 195 LLIVNISFGVMTRAAPQMNIFSIGFPMTVLFGLVVFWISIGGILPQFT 242 >gi|254720780|ref|ZP_05182591.1| flagellar biosynthesis protein FliR [Brucella sp. 83/13] gi|265985839|ref|ZP_06098574.1| flagellar biosynthetic protein FliR [Brucella sp. 83/13] gi|306840129|ref|ZP_07472914.1| flagellar biosynthetic protein FliR [Brucella sp. NF 2653] gi|264664431|gb|EEZ34692.1| flagellar biosynthetic protein FliR [Brucella sp. 83/13] gi|306404774|gb|EFM61068.1| flagellar biosynthetic protein FliR [Brucella sp. NF 2653] Length = 255 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 138/241 (57%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + ++++ + Sbjct: 66 DAGQPWMLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSVTENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTH 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|170722842|ref|YP_001750530.1| flagellar biosynthesis protein FliR [Pseudomonas putida W619] gi|169760845|gb|ACA74161.1| flagellar biosynthetic protein FliR [Pseudomonas putida W619] Length = 258 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 105/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV + +M +P +P ++RL A+A ++V++P L + R Sbjct: 12 WVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYAAVAITVVIVPALPPLPEFDPLSLRG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ +G + G +++ G +I+ +G+ + + ++ + ++ Sbjct: 72 LL--LCGEQIIVGALFGFSLQLLFQAFVIAGQIIAIQMGMAFASMVDPANGVNVAVVSQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + V++ H VF L +S+ T+P+G L N F L F L L Sbjct: 130 MTMLVSVLFLVMNGHLVVFEVLTESFTTLPVGNALVV-NHFWEMAGRLSWVFGAGLLLIL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + + ++ + Sbjct: 189 PAIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADVLSHYQ 241 >gi|104782806|ref|YP_609304.1| flagellar biosynthesis protein FliR [Pseudomonas entomophila L48] gi|95111793|emb|CAK16517.1| flagellar biosynthetic protein FliR [Pseudomonas entomophila L48] Length = 258 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 104/233 (44%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV + +M +P +P +VRL A+A ++V++P L ++ R Sbjct: 12 WVATFILPLFRVTALLMTMPIFGTKMLPARVRLYAAVAITVVIVPGLPPLPEIDPLSLRG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ +G + G +++ G +++ +G+ + + ++ + ++ Sbjct: 72 VL--LCGEQIIVGALFGFSLQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVAVVSQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + V++ H F L +S+ T+P+G L N F L L L Sbjct: 130 MTMLVSVLFLVMNGHLVAFEILTESFTTLPVGNALVV-NHFWEMAGRLSWVLGAGLLLIL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V N++ G++ + PQ+ I+ I P + LG + + I+ + Sbjct: 189 PAIAALLVVNVAFGVMTRAAPQLNIFSIGFPLTLVLGLGIFWVGLADILSHYQ 241 >gi|78224287|ref|YP_386034.1| flagellar biosynthesis protein FliR [Geobacter metallireducens GS-15] gi|78195542|gb|ABB33309.1| Flagellar biosynthesis protein FliR [Geobacter metallireducens GS-15] Length = 264 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 111/235 (47%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L++ R+ +P +PM +++ A ++V P + I Q + Sbjct: 14 VAFFALVLGRMAGIFAAIPLFGGRRVPMNIKVLAIFALTVVCFPLIKAKIP-QLPADMLS 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E +G GLL + ++F G + +GL++ + + S + ++ Sbjct: 73 LGMLMIREALVGTCLGLLSLIIFAAVEFCGQICGIQMGLSIVSEIDPSRGSQLSIISIFQ 132 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L ++ HH ALV+SY +P+G + + V + F++ ++LS+P Sbjct: 133 EMFATLLFLSLNVHHVFINALVESYAVLPVGAWTMSEGLLNFLVVTIGQVFILAIKLSAP 192 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ ++ +G++ + PQ+ ++F+S P IG+G + L LS+ + ++ SF Sbjct: 193 IMVTLLLTSVMLGIMARAFPQMNVFFVSMPLNIGIGFIILGLSLTVFLHTLRGSF 247 >gi|167834872|ref|ZP_02461755.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis MSMB43] Length = 260 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 106/240 (44%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + + P P++V++ A ++V+ P L + F + Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRATPVRVKIGLAGFMALVVTPTLPPMPVVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 GVW--IIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHASGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QVF ALV S+ +PI +L + + V F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGAAIFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ + P + +G L + L +V F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMAPNLVPFVGRLFDTG 248 >gi|325525520|gb|EGD03319.1| flagellar biosynthetic protein FliR [Burkholderia sp. TJI49] Length = 260 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 107/241 (44%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + +P++V++ A ++++ P L + F Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHPSVPVRVKIGVAAFMALIVAPTLGAMPPVTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G G +++ ++ G I ++GL T S A + Sbjct: 71 GIW--IVVTQFLIGAAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA +D H QVF AL S+ ++P+ L + + T F + L L+ Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALAASFQSLPVSAALLHAPGWRTLAAFGATVFGMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P + +G L + L + +V S F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQIGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|254503465|ref|ZP_05115616.1| Bacterial export protein, family 1 [Labrenzia alexandrii DFL-11] gi|222439536|gb|EEE46215.1| Bacterial export protein, family 1 [Labrenzia alexandrii DFL-11] Length = 258 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 1/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNR 66 ++++ FL+ CR+G+C+M++PG + IPM+VRL A S+ L P L I Sbjct: 15 LVLATFLLFCRIGACLMVIPGFGSNRIPMRVRLFVAFGISLALSPLLVPDIQQALPDEAL 74 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 S + EL G G L R++ L+ +++S AIGL+ M I A P+ + Sbjct: 75 GTVSFFIGAELLTGLFIGFLGRIFIAALETLTTLVSMAIGLSNMPGMPIDGVDALPPVAN 134 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L + +++ D H ++ LV+SY IP G+ L F L TF++ LR+ Sbjct: 135 LFTLTATAMIFIADQHWEILRGLVQSYEVIPPGRPLAAMASLEQFAEQLARTFVLALRVV 194 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 SPF+ + IV N+++GL+NKL PQIP+YFIS P++I G FL L + F + Sbjct: 195 SPFIVYTIVVNLAVGLINKLTPQIPVYFISLPFVIAGGLYFLYLVAAEAIMIFLDGY 251 >gi|90411035|ref|ZP_01219049.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] gi|90328248|gb|EAS44559.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] Length = 260 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 100/240 (41%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M + ++ ++RL + + ++P L ++ Sbjct: 11 WLANYFWPFTRISSMMMTMTFFGARFVSPRIRLYLGLTVTFAVMPSLPAVPANIELLSLQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G GL+ + T G ++ L + + ++ L L Sbjct: 71 GFL-ITAQQIVIGVSIGLVTQFVTQTFVLVGQILGMQSSLGFASMVDPANGQNTPVLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ D H ++ +V S+ T+PIGQE+ + + F L ++ Sbjct: 130 YLFLAIMLFLATDGHLEMLNVIVLSFKTLPIGQEMFRPDDYYQLAGWFGHMFKGALNMAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N+S G++ + PQ+ I+ + + + LG L + ++ Q+ H++ +GF Sbjct: 190 AGVIALLTVNLSFGVMTRAAPQLNIFALGFSFALLLGLLISWYLVMGMLPQYQHAWDFGF 249 >gi|219854407|ref|YP_002471529.1| hypothetical protein CKR_1064 [Clostridium kluyveri NBRC 12016] gi|219568131|dbj|BAH06115.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 609 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +L L+ R+ ++P + P V++ + + +LLP + D + + Sbjct: 10 FTALILVTLRIFCFFTMIPIFFPNGTPNIVKVGLTLVIAYILLPGI-DYSTVNTISSTIP 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + E G G L+ + + GS + +G ++ + + S T L L+ Sbjct: 69 FVYNCINEAAAGLTLGFLVSLCFTAFRIAGSYMDLQVGFSMMSMFDPNSSSNTTLLERLM 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ +D HH + +L+ S+ TI +G + + F I L+++ P Sbjct: 129 YWFCMVVFLAVDGHHMLIRSLIDSFATIKLGSFFLAQGSINIIIKAFIMYFSIALKIAIP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L ++ ++++ L+ + VPQ+ I + P I +G C ++ I + +SF Sbjct: 189 ILLIILIADLTMSLIARTVPQLNIMILGLPIKILIGLGSFCFALPIFLKIMGNSF 243 >gi|261407966|ref|YP_003244207.1| flagellar biosynthetic protein FliR [Paenibacillus sp. Y412MC10] gi|261284429|gb|ACX66400.1| flagellar biosynthetic protein FliR [Paenibacillus sp. Y412MC10] Length = 262 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 106/240 (44%), Gaps = 7/240 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI CR+ S ++ P + IP ++ + ++++ + Y+ Sbjct: 11 FMLIFCRITSFFVISPVFASRGIPSSYKIALSAIIALIVYLSFGLG---EVVPQDLSYAI 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G + G + +Q G++I IG ++ + + + + + Sbjct: 68 LIVQEVLVGLLLGFTAYLIMAVVQTAGALIDIQIGFSMANVIDPFTGTSTPLIGNFKYYL 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIMLRLSS 187 LL ++ HH +F A++ SY IPI ++ GN+ V +F++ +++++ Sbjct: 128 ALLVFLSMNGHHYLFDAIMYSYDWIPITGDVFGKIHEGNVTDFLVRTFSHSFVLAIQMAA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++ +G L + PQ ++ I I +G + L L + ++V F H F F Sbjct: 188 PLVAALFLTDVGLGFLARTAPQFNVFVIGIIIKIIVGLVLLMLLMPMLVSLFDHLFAKMF 247 >gi|163758040|ref|ZP_02165128.1| flagellar biosynthesis protein R [Hoeflea phototrophica DFL-43] gi|162284329|gb|EDQ34612.1| flagellar biosynthesis protein R [Hoeflea phototrophica DFL-43] Length = 251 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 96/244 (39%), Positives = 141/244 (57%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M PE +++LF CR+G CIM+LPG S +P+Q+RL A+A S+ LLP LW+T+ Sbjct: 1 MMSDPEGTILALFAAFCRIGGCIMVLPGFSSFRVPVQIRLFIAVAISMALLPMLWETLYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ EL +G GL+ R L LQF G+ +S AIG N G+ ++ Sbjct: 61 NVQTGGGIYIGLIGTELLIGVTFGLIARYIVLALQFAGTGLSMAIGFNAAPGGGLLETEQ 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 E + SLI +L L++ DFHH V AL++SY +P+G + + + L FM Sbjct: 121 EGNITSLITFTAVLLLFLSDFHHMVIEALLRSYDFMPLGSGFDPQMALMTLTDTLAGAFM 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++LRL+SPFL + + FN+SIGL+NKL P IP+YFI+ P+++ G L L + QF Sbjct: 181 LVLRLASPFLVYSMAFNLSIGLINKLAPAIPVYFITIPFILAGGLLLLFFGSQEFFKQFL 240 Query: 241 HSFL 244 F+ Sbjct: 241 DGFV 244 >gi|153953791|ref|YP_001394556.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium kluyveri DSM 555] gi|146346672|gb|EDK33208.1| Fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium kluyveri DSM 555] Length = 606 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +L L+ R+ ++P + P V++ + + +LLP + D + + Sbjct: 7 FTALILVTLRIFCFFTMIPIFFPNGTPNIVKVGLTLVIAYILLPGI-DYSTVNTISSTIP 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + E G G L+ + + GS + +G ++ + + S T L L+ Sbjct: 66 FVYNCINEAAAGLTLGFLVSLCFTAFRIAGSYMDLQVGFSMMSMFDPNSSSNTTLLERLM 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ +D HH + +L+ S+ TI +G + + F I L+++ P Sbjct: 126 YWFCMVVFLAVDGHHMLIRSLIDSFATIKLGSFFLAQGSINIIIKAFIMYFSIALKIAIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L ++ ++++ L+ + VPQ+ I + P I +G C ++ I + +SF Sbjct: 186 ILLIILIADLTMSLIARTVPQLNIMILGLPIKILIGLGSFCFALPIFLKIMGNSF 240 >gi|24374728|ref|NP_718771.1| flagellar biosynthesis protein FliR [Shewanella oneidensis MR-1] gi|24349388|gb|AAN56215.1|AE015759_7 flagellar biosynthetic protein FliR [Shewanella oneidensis MR-1] Length = 265 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 96/239 (40%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + RV S +M++ + P +VRL A+A ++ + P L D Q F A Sbjct: 11 TIASYMWPLFRVASMLMVMVVFGAATTPTRVRLLLAIAITLAIAPVLPPVKDAQLFSLSA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + ++ TG +I L + + S + + Sbjct: 71 VFITA--QQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + LV S+ T+PI + S F L +S Sbjct: 129 FLLLATLIFLAVDGHLLMIRMLVASFDTLPISNVGLTLTSYRSLAEWGSYMFGAALTMSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F + Sbjct: 189 SAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFDEVWASA 247 >gi|209884539|ref|YP_002288396.1| flagellar biosynthetic protein FliR [Oligotropha carboxidovorans OM5] gi|209872735|gb|ACI92531.1| flagellar biosynthetic protein FliR [Oligotropha carboxidovorans OM5] Length = 258 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 121/237 (51%), Gaps = 1/237 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ + L+ RVG+ +MLLPG + +P+++RL A+ +++LLP + Sbjct: 10 VLAATFMLVFARVGAMMMLLPGFGEANVPVRLRLGIALLLAMILLPLHRAAYHVDLTSIN 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L++ E+ +G V G R L GS+I+ IGL T++ + L + Sbjct: 70 AVMI-LMVHEIIIGVVLGATARFTLAALSVAGSIIAQQIGLGFVTAVDPTQDQQSVILAN 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+GL ++ D H+ V AL SY G+ + G++ + F I ++L+ Sbjct: 129 FLTILGLTLIFATDTHYLVIAALNDSYTLFQPGELMPSGDVAALATKAFTMAFTIGVQLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +PF+ F ++FN+ +GLL +++PQ+ +YF+ P I G L L + + ++ F F Sbjct: 189 APFIIFGLIFNLGLGLLARMMPQMQVYFVGVPLSILAGFLLLGIVLVALMGTFLDYF 245 >gi|90418351|ref|ZP_01226263.1| putative flagellar biosynthesis protein FliR [Aurantimonas manganoxydans SI85-9A1] gi|90338023|gb|EAS51674.1| putative flagellar biosynthesis protein FliR [Aurantimonas manganoxydans SI85-9A1] Length = 251 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 137/246 (55%), Gaps = 1/246 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59 M++ ++ SLFLI CR GSC++L+PG S S +P+QVRL ++A S+ L P L T+ Sbjct: 1 MSVELSELVFSLFLIFCRFGSCLLLMPGFSSSRVPLQVRLFLSLAVSVALSPALLPTLQP 60 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 L + L++ E+ G GLL R + + LQF G V++ +IG+ +Q + I +S Sbjct: 61 LVAAADDNGKLALMISEILNGLFIGLLGRSFMIALQFAGHVVANSIGMGMQMGVPIDESD 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 + SLI + ++V++ H ++ ALV SY +P + + + L F Sbjct: 121 PMPAVASLITLTATTLIFVLNLHAEIARALVASYTAMPAAAGFSIRGSLVNITDNLDEAF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ LR+SSPF+ + +V N +IGL NKL P IPIYFIS P+++ G + L +I + F Sbjct: 181 LLCLRISSPFVLYGVVVNFAIGLANKLTPTIPIYFISLPFVLAGGLVLLGYTISDFLILF 240 Query: 240 SHSFLY 245 F Sbjct: 241 MQDFER 246 >gi|39936945|ref|NP_949221.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris CGA009] gi|192292773|ref|YP_001993378.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris TIE-1] gi|39650802|emb|CAE29325.1| putative flagellar biosynthetic protein FliR [Rhodopseudomonas palustris CGA009] gi|192286522|gb|ACF02903.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris TIE-1] Length = 255 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 123/237 (51%), Gaps = 1/237 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L+ R+G+ +ML+P S IP +V+L A+ ++++LP + + + Sbjct: 10 ALAATFMLVFARIGAMVMLMPTFGESNIPTRVKLSIALLLTLIMLPLHRSAYQI-DMSSL 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L++ E+ +G V G RV LQ G+VI+ +GL +++ + + + Sbjct: 69 TPLLVLMLQEIAVGIVLGATARVTLSALQVAGAVIAQQLGLGFVSAVDPTQGQQGVVVGN 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++G+ L+ D H+ V AL SY G+ L+ G++ + F + L+LS Sbjct: 129 FLTMLGVTLLFATDMHYLVIQALSDSYKVFAPGELLHTGDVAALATKAFAAAFKLGLQLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +PFL F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + + ++ F F Sbjct: 189 APFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIVIGFIVLAVVLTTMMGAFLGYF 245 >gi|118589958|ref|ZP_01547362.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614] gi|118437455|gb|EAV44092.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614] Length = 258 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 1/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN-R 66 +++++FL+ CR+G+C+M++PG + +P+ VRL A++ ++ L P L + Sbjct: 15 LLLAVFLLFCRIGACLMVIPGFGSNRVPVHVRLFIALSVALALSPLLAPGVQASLPDEQL 74 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + EL G G L R++ L+ +++S AIGL+ M I + P+ + Sbjct: 75 GTVAGFIGAELLTGAFIGFLGRIFLAALETLTTLVSMAIGLSNMPGMPIDGVDSLPPVAN 134 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L + +++ + H ++ L SY IP+GQ L F L TF++ LR+ Sbjct: 135 LFTVTATAMVFITNQHWEILRGLAASYEAIPVGQPLAAVTGLEQFAEQLAKTFLLALRVC 194 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 SPF+ + +V N ++GL+NKL PQIP+YFIS P++I G FL L I + F + Sbjct: 195 SPFIVYTVVVNFAVGLVNKLTPQIPVYFISMPFVIAGGLYFLYLVIAEAIMIFLDGY 251 >gi|254785482|ref|YP_003072911.1| flagellar biosynthetic protein FliR [Teredinibacter turnerae T7901] gi|237685643|gb|ACR12907.1| flagellar biosynthetic protein FliR [Teredinibacter turnerae T7901] Length = 257 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 102/240 (42%), Gaps = 2/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + FL R+G +++P + +VRL A +++++P L + +A Sbjct: 11 FIQQYFLPFVRIGVMFLVMPVFGSRIVSPRVRLVLAFLITVLVVPLLPALPSVPPLSWQA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + V E+ LG G +V G ++ +GL + ++ + T L+ Sbjct: 71 LFF--VAQEVVLGAAVGFTFQVVFQMFVLGGQFMAMKMGLGFASMNDPTNGVQTTVLSQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H + +V S+ T+ G+ + + F V + F L ++ Sbjct: 129 FLMLVTLMFVAVEGHLVLISLIVDSFHTLQPGRFVFASSNFYEIVKLGSWMFAAALLMAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + NI+ G++++ PQ+ I+ + P+ + G L + L + F + YGF Sbjct: 189 PVITSLLFVNIAFGIMSRAAPQLNIFAVGFPFTLMCGLLLIWLGLTHFSEIFETAITYGF 248 >gi|154686054|ref|YP_001421215.1| flagellar biosynthesis protein FliR [Bacillus amyloliquefaciens FZB42] gi|154351905|gb|ABS73984.1| FliR [Bacillus amyloliquefaciens FZB42] Length = 259 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 98/236 (41%), Gaps = 6/236 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P +P R+ FA S++ L +++ Y Sbjct: 10 AFLLVFIRISAFFVTVPVFGHRNLPAVHRIGFAFFLSVICFSTLKHAPEIE---IGEQYM 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E +G GL+ + +Q GS I +G ++ + + + Sbjct: 67 LLVIKEAVVGLSLGLIAFMMMTAIQIAGSFIDFQMGFSIANVIDPQSGTQSPLIGQFVYT 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSS 187 + LL + I+ H+ + + S+ IP+ Q + F+I ++S+ Sbjct: 127 LALLFMLSINAHYLLLDGIYYSFQYIPLDQAFPSFGNDHFGLFIAKSFNAMFIIAFQMSA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ + F Sbjct: 187 PVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMAVMFVVVRNIF 242 >gi|221201781|ref|ZP_03574818.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2M] gi|221207714|ref|ZP_03580722.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2] gi|221172560|gb|EEE04999.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2] gi|221178201|gb|EEE10611.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2M] Length = 260 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 108/241 (44%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P +V++ A ++++ P L + F + Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHASVPARVKIGVAAFMALIVAPTLGPMPAVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G G +++ ++ G I ++GL T S A + Sbjct: 71 GIW--IVVTQFLIGTAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA +D H QV AL S+ ++P+ +L + + T F + L L+ Sbjct: 129 FLNAVAMLAFLAVDGHLQVVAALTASFQSLPVSADLLHAPGWRTLAAFGATVFGMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ + P + +G L + L + +V S F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|162139929|ref|YP_339328.2| flagellar biosynthesis protein FliR [Pseudoalteromonas haloplanktis TAC125] Length = 259 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 99/237 (41%), Gaps = 2/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L + R+ S IM++ GL +P ++++ A+ + V +P L F Sbjct: 11 WLSDFLLPLVRISSMIMVMAGLGAKNVPTRIKMGLAIVVTFVAVPMLPPATFTNLFS--F 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V+ ++ +G G + G +++ GL + + S+ L+ + Sbjct: 69 EMILVVIQQMLIGIAIGFASTLLLNTFVLAGQILAMQTGLGFASVVDPSNGLSVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L +V + H + +V S+ +PI + + V F L LS Sbjct: 129 YLILATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L +V N+S G++ + PQ+ I+ I P+ + G + + ++ V QF +L Sbjct: 189 APLTAMLVINMSFGIMTRAAPQLNIFSIGFPFTLVAGLIIIWATLGNFVSQFEFQWL 245 >gi|239834419|ref|ZP_04682747.1| flagellar biosynthetic protein FliR [Ochrobactrum intermedium LMG 3301] gi|239822482|gb|EEQ94051.1| flagellar biosynthetic protein FliR [Ochrobactrum intermedium LMG 3301] Length = 255 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 138/241 (57%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQ 61 + I+++ L CR+G+C+ML+PGLS + IP+QVRL A+A S +LP + I + Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGLSSARIPLQVRLFIALACSFAVLPLVLQRIITVV 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + +L+ E+F+G V G+L +Y LQF S ++ +IG + + I++S + Sbjct: 66 DAGQPLTLFRLMASEIFIGAVIGILAHIYFWALQFMASTMAVSIGYSGSPADAITESEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L ++ D H ++F AL+ SY IP+ + + F + L F+ Sbjct: 126 ATLATIVTFSALFLFFITDMHLEIFRALLNSYVAIPVDGQFRPDAVMIDFTDALSGAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YF+S P+++G G L + + ++ F++ Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPTIPVYFVSMPFVLGGGLLVVYFILPELLRFFTN 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|302878287|ref|YP_003846851.1| flagellar biosynthetic protein FliR [Gallionella capsiferriformans ES-2] gi|302581076|gb|ADL55087.1| flagellar biosynthetic protein FliR [Gallionella capsiferriformans ES-2] Length = 260 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 108/242 (44%), Gaps = 3/242 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 +I + +L + R+ + I P L +P +V++ ++ +IV+ P L D+ Sbjct: 10 DIWLSTLLYPMVRLLAMISSAPILGNKQVPARVKIGLSVLMAIVIAPTLAPMPDIPLGSP 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ +++ ++ +G G +R+ ++ G +GL + + + T Sbjct: 70 QSLL--IMVQQIIIGVSMGFTMRIVFTAVEMAGEFSGLQMGLGFASFYNPQSASSSTVTA 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 +GII LA ++ H + + +S+ T+P+GQ + + +++ T F L+L Sbjct: 128 QFMGIIATLAFLSMNGHLMLLALVTESFHTLPVGQMMATKSFYTA-AQWGATIFAYGLQL 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P L ++ N+++G++ + Q+ + I P + +G L LS+ + Sbjct: 187 SMPLLAALLITNLALGIMTRAAQQLNPFAIGFPITLTVGFFVLSLSLPYLAPMLDRMTTE 246 Query: 246 GF 247 G Sbjct: 247 GL 248 >gi|134294168|ref|YP_001117903.1| flagellar biosynthetic protein FliR [Burkholderia vietnamiensis G4] gi|134137325|gb|ABO53068.1| flagellar biosynthetic protein FliR [Burkholderia vietnamiensis G4] Length = 260 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 109/241 (45%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + +PM+V++ A ++V+ P L + F + Sbjct: 11 GWLTAFLWPFVRMLALVATAPLVGHGAVPMRVKIGLAAFMALVVAPTLGAMPGVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G G + + ++ G I ++GL T + A + Sbjct: 71 GIW--IVVTQFLIGVSMGFTMHLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA +D H QVF AL S+ T+P+ EL + + T F + L L+ Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALAASFQTLPVSAELLHAPGWHTLAAFGVTVFQMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|121592128|gb|ABD36818.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens] Length = 261 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 106/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + RV S +M++P + +P +VRL FA+A ++V+ P L + Sbjct: 15 WVASFMLPLFRVASMLMVMPVFGTTLVPRRVRLYFALAITVVITPNLPPMPAVSPLDLSG 74 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G V G ++++ G +++ +G+ + + ++ ++ + Sbjct: 75 LL--LIGEQILVGAVLGFSLQLFFQAFAVAGQIVAIQMGMGFASMVDPANGVSVAVIGQF 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H VF L +S+ T+P+G L + L L L Sbjct: 133 FTMLVTLLFLSMNGHLVVFEVLTESFTTLPVGGGLMTAQ-YWELAGKLGWVLGAALLLVL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + + + I+ Q+ Sbjct: 192 PAVTALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGLFIVWVGLADILNQYQ 244 >gi|315648121|ref|ZP_07901222.1| flagellar biosynthetic protein FliR [Paenibacillus vortex V453] gi|315276767|gb|EFU40110.1| flagellar biosynthetic protein FliR [Paenibacillus vortex V453] Length = 262 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 104/240 (43%), Gaps = 7/240 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI CR+ S ++ P + +P ++ + ++++ + Y Sbjct: 11 FMLIFCRITSFFVISPVFTSRSVPTSYKIALSAIIALIVYFSFGLG---EVVPQDLSYVI 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G + G + +Q G++I IG ++ + + + + + Sbjct: 68 LIVQEVLVGLLLGFTAYLIMAVVQTAGALIDIQIGFSMANVIDPFTGASTPLIGNFKYYL 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELN----FGNIFSSFVNMLQTTFMIMLRLSS 187 LL ++ HH + A++ SY IPI ++ GN+ V +F++ L++++ Sbjct: 128 ALLVFLSMNGHHYLLDAIMYSYDWIPITGDVFGKIHDGNVTDFLVRTFSHSFVLALQMAA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++ +G L + PQ ++ I I +G + L L + ++V F H F F Sbjct: 188 PLVAALFLTDVGLGFLARTAPQFNVFVIGIIIKIIVGLVLLMLLMPMLVSLFDHLFAKMF 247 >gi|329929261|ref|ZP_08283014.1| flagellar biosynthetic protein FliR [Paenibacillus sp. HGF5] gi|328936630|gb|EGG33073.1| flagellar biosynthetic protein FliR [Paenibacillus sp. HGF5] Length = 264 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 105/240 (43%), Gaps = 7/240 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI CR+ S ++ P + IP ++ + ++++ + Y Sbjct: 13 FMLIFCRITSFFVISPVFASRGIPSSYKIALSAIIALIVYLSFGLG---EVVPQDLSYVI 69 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G + G + +Q G++I IG ++ + + + + + Sbjct: 70 LIVQEVLVGLLLGFTAYLIMAVVQTAGALIDIQIGFSMANVIDPFTGTSTPLIGNFKYYL 129 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIMLRLSS 187 LL ++ HH +F A++ SY IPI ++ GN+ V +F++ +++++ Sbjct: 130 ALLVFLSMNGHHYLFDAIMYSYDWIPITGDVFGKIHEGNVTDFLVRTFSHSFVLAIQMAA 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++ +G L + PQ ++ I I +G + L L + ++V F H F F Sbjct: 190 PLVAALFLTDVGLGFLARTAPQFNVFVIGIIIKIIVGLVLLMLLMPMLVSLFDHLFAKMF 249 >gi|92116949|ref|YP_576678.1| flagellar biosynthesis protein FliR [Nitrobacter hamburgensis X14] gi|91799843|gb|ABE62218.1| flagellar biosynthetic protein FliR [Nitrobacter hamburgensis X14] Length = 256 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 1/235 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + L+ R+G+ +MLLPG +IP++V+L A+ ++++LP + + + A Sbjct: 13 AAFMLVFARIGAMVMLLPGFGEVFIPVRVKLAIALLLTLIILPLHRSAYHV-DMQSVAPL 71 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + L++ E+ +G V G RV L GSVI+ +GL TS+ + + + + Sbjct: 72 AVLMVHEIIIGVVLGATARVTLAALSVAGSVIAQQLGLGFVTSIDPTQGQQGALMGNFLT 131 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+PF Sbjct: 132 LLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAAAFKIGLQLSAPF 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + ++ + F+ Sbjct: 192 LVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFVILAAVLASMMGTYMDYFI 246 >gi|206561838|ref|YP_002232603.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia J2315] gi|198037880|emb|CAR53824.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia J2315] Length = 260 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 110/241 (45%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P++V++ A ++V+ P L D+ F Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGLAAFMALVVAPTLGAMPDVTVFSAP 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G +++ ++ G I ++GL T S A + Sbjct: 71 GIW--ILVTQFLIGVAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHTSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA +D H Q+F AL S+ ++P+ +L + + F + L L+ Sbjct: 129 FLNAVAMLAFLAVDGHLQMFAALAASFQSLPVSGDLLHAPGWRTLATFGAVVFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ + P + +G L + L + +V SH F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|311068159|ref|YP_003973082.1| flagellar biosynthesis protein FliR [Bacillus atrophaeus 1942] gi|310868676|gb|ADP32151.1| flagellar biosynthesis protein FliR [Bacillus atrophaeus 1942] Length = 259 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 94/236 (39%), Gaps = 6/236 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P +P R+ FA +++ L ++ +Y Sbjct: 10 AFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTLDQAPSIE---IDEHYM 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + E +G GL+ + +Q GS I +G + + + I Sbjct: 67 LLAVKETVVGLSLGLIAFIMIAAVQIAGSFIDFQMGFAIANVIDPQTGAQSPLIGQFIYT 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSS 187 + LL + ++ HH + + S+ I I Q F+I ++S+ Sbjct: 127 MALLFMLSVNAHHLLLDGIYYSFQYISIDQAFPAFGNEEFAYFIAKSFNAMFIIAFQMSA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P I + + L + + +I + F Sbjct: 187 PVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFGVIQNIF 242 >gi|170743255|ref|YP_001771910.1| flagellar biosynthetic protein FliR [Methylobacterium sp. 4-46] gi|168197529|gb|ACA19476.1| flagellar biosynthetic protein FliR [Methylobacterium sp. 4-46] Length = 252 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 127/243 (52%), Gaps = 1/243 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M + + + L RVG+ +ML+PG+ + + ++RL FA+ ++VL PF+ + Sbjct: 1 MNLLLPGLAAAYLLTFARVGTLVMLMPGIGETVVAPRLRLAFALLVALVLFPFVRPLLPQ 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q A L+ E+ +G V GL +R LQ TG++++ +GL ++ + S Sbjct: 61 QAGTGPALIGVLI-GEIAVGLVLGLSVRAVLAALQTTGTIVAQQLGLAYAMTVDPTTSGQ 119 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L S + ++G+ + D HH + SY +P G+ + + + F Sbjct: 120 QATLGSFLTMLGITLVLAADLHHLAIAGIRDSYALMPPIGVPATGDAAAFAIRAVARGFA 179 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + +++++PF+ F I+FN+ +G+L++L+PQ+ ++F++TP I +G L S+ +++ F Sbjct: 180 LAVQIAAPFIAFGILFNLGLGVLSRLMPQMQVFFVATPASILIGMAVLLASLGVVMGVFV 239 Query: 241 HSF 243 Sbjct: 240 EDL 242 >gi|322421719|ref|YP_004200942.1| flagellar biosynthetic protein FliR [Geobacter sp. M18] gi|320128106|gb|ADW15666.1| flagellar biosynthetic protein FliR [Geobacter sp. M18] Length = 261 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 102/235 (43%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ L++ RV M +P +P +V+ A ++++ P + + + Sbjct: 13 LIPFALVLARVAGLFMAIPMFGARLVPNRVKAVLIFALALLIFPIIR-LHAIPAADDSLS 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E +G G + + ++F G ++ T +G+++ + + Sbjct: 72 LMLLVLRESLIGLTLGAISQFVFAAVEFCGQLVGTQMGISIAAQFDPTTQNNVPTMAIFQ 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 G + L + HH +V+SY IP+G G + + F+I ++L++P Sbjct: 132 GALATLIFLSLGVHHFFIRGIVESYQLIPLGAWHTSGGLLKFLIEASTGIFVIGIKLAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ +G++ + P + ++ +S P IG+G L L +S+ + + SF Sbjct: 192 VSVALLATSVVLGIVARSFPAMNVFMVSMPLNIGIGFLILGISLPVFLRVLQGSF 246 >gi|319649549|ref|ZP_08003705.1| flagellar biosynthetic protein fliR [Bacillus sp. 2_A_57_CT2] gi|317398711|gb|EFV79393.1| flagellar biosynthetic protein fliR [Bacillus sp. 2_A_57_CT2] Length = 258 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 102/240 (42%), Gaps = 7/240 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI RV S +++P S IP ++ + ++ +D+ YS Sbjct: 10 AFLLIFVRVTSFFLMMPLFSYRSIPAAHKIGLGFFLAWIMFL----GMDVPMLEIDGTYS 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ E +G + G + + +Q G I +G + + + + Sbjct: 66 LLIIKEALVGLMVGFIAYLILSAIQIAGGFIDFQMGFAIANVIDPQTGAQSPLMGQYLYT 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQE---LNFGNIFSSFVNMLQTTFMIMLRLSS 187 I L L ++ HH + + SY IP+ Q ++ + L T F+I ++S Sbjct: 126 IALFFLLTVNGHHLMLDGVFYSYDFIPLDQAWISFGDEDMAEYVIKALNTMFVIAFQMSI 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++++G++ + VPQ+ ++ + P IG+ + L + + +++Y S +F Sbjct: 186 PVVGSLFLVDVALGIVARTVPQLNVFVVGLPLKIGVSFIVLIIVMSVLMYAVSLAFETML 245 >gi|146307832|ref|YP_001188297.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina ymp] gi|145576033|gb|ABP85565.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina ymp] Length = 258 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 107/234 (45%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L + R+ + +M++P + +P +VRL A+A S+VL+P L + Sbjct: 11 GWVGQFLLPLFRIAAMLMVMPIIGTQLVPNRVRLYLALAISVVLVPTLPPMPQVD--ALS 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L++ ++ +G + G +++++ G +I+ +GL + + ++ ++ L Sbjct: 69 LRSLLLILEQVLIGAMFGFILQLFFHLFAVAGQIIAMQMGLGFASMVDPTNGVSVPVLGQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ L I+ H V L +S+ ++P GQ L G+ + L L L+ Sbjct: 129 FMLMLVTLLFLAINGHLVVLEVLAESFVSLPPGQGLMIGH-YWELAGKLGWVIGAGLLLT 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V N++ G++ + PQ+ I+ I P + +G + + + F Sbjct: 188 LPMVTALLVINLAFGVMTRAAPQLNIFSIGFPLTLAMGLVIFWIGLSDFGSLFQ 241 >gi|54308127|ref|YP_129147.1| flagellar biosynthesis protein FliR [Photobacterium profundum SS9] gi|46912553|emb|CAG19345.1| putative polar flagellar assembly protein FliR [Photobacterium profundum SS9] Length = 260 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 100/240 (41%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M + ++ ++RL + + ++P L ++ Sbjct: 11 WLANYFWPFTRISSMMMTMTFFGARFVSPKIRLYLGLTVTFAVMPALPAVPANIELLSLQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G GL+ + T G ++ L + + ++ L L Sbjct: 71 GFL-ITAQQIVIGVSIGLVTQFVTQTFVLVGQILGMQSSLGFASMVDPANGQNTPVLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ D H ++ +V S+ T+PIGQE+ + + F L ++ Sbjct: 130 YLFLAIMLFLATDGHLEMLNIIVLSFKTLPIGQEMFRPDDYYQLAGWFGHMFKGALNMAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N+S G++ + PQ+ I+ + + + LG L + ++ Q+ H++ +GF Sbjct: 190 AGVIALLTVNLSFGVMTRAAPQLNIFALGFSFALLLGLLISWYLVMGMLPQYQHAWDFGF 249 >gi|193222345|emb|CAL62040.2| Flagellar biosynthetic protein FliR [Herminiimonas arsenicoxydans] Length = 263 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 96/239 (40%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + R+ I + P +P +V++ + ++++ P + + Sbjct: 12 WIASFLWPLTRILGLISVAPLFGNVSVPARVKISLGIMLALIIAPTVPALPAMDPMSPAG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L +G G +R+ G++ G + +GL + + ++ Sbjct: 72 LLILVQQ--LLIGLTMGFAMRIVFAGVEMAGEITGMTMGLGFASFFDPQTRARSSAISQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L+ + H V L +S+ +PI F V F ++LS Sbjct: 130 LALLILMIYLSTNLHLVVLSTLAQSFELLPISSNFVSTEGFFQVVKWGGRIFSAGVQLSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ NI++G+L + PQ+ I+ I P IG+G + + + + ++ F + G Sbjct: 190 PMVAALLMTNIALGILTRAAPQLNIFGIGFPITIGVGFIMIAIVLPYLMNPFINLMQEG 248 >gi|329901239|ref|ZP_08272764.1| Flagellar biosynthesis protein FliR [Oxalobacteraceae bacterium IMCC9480] gi|327549171|gb|EGF33763.1| Flagellar biosynthesis protein FliR [Oxalobacteraceae bacterium IMCC9480] Length = 258 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 96/239 (40%), Gaps = 2/239 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ + R+ I + P + +P ++++ + ++++ P + L+ + Sbjct: 11 ALITGFLWPLTRILGLIAVAPVFGNASVPRRIKVGLGILIAMIVAPLVQVPSGLEPMSMQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L +G G +R+ ++ G V S +GL T ++ Sbjct: 71 GLLILVQQ--LLIGIAMGFSMRIIFSAVEMAGEVASMTMGLGFATFFDPQSRGRSNAVSQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + +I L+ + H + LV S+ T+PI GNI V F L+L+ Sbjct: 129 FLSLIVLMVYLAANVHLALLSTLVDSFTTMPITVGPLAGNIAEQVVRWASRLFSAGLQLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + ++ N+++G+L + P + ++ I P + +G L L + + + F Sbjct: 189 LPIVAALLITNVALGILTRAAPSLNLFGIGFPITLTIGFAMLGLVLPYLATPMAKLFEE 247 >gi|114332027|ref|YP_748249.1| flagellar biosynthetic protein FliR [Nitrosomonas eutropha C91] gi|114309041|gb|ABI60284.1| flagellar biosynthetic protein FliR [Nitrosomonas eutropha C91] Length = 266 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 2/246 (0%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T ++ L + R+ + + P L S IP+QV+L A+ +I++ P L + Sbjct: 6 TEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPPLPQID 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 +++ ++ +G G IR+ ++ G + +GL T S Sbjct: 66 PGSGVGP--IVLLQQIIIGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQV 123 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 + G++ L ID H QV L +S+ +PIG + F++ VN F + Sbjct: 124 QLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPIGADGMNVTSFTTLVNWGAEIFTL 183 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P L ++ N+++G+L + PQ+ I+ + P +G+G L + ++ + Sbjct: 184 GLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPVLTQ 243 Query: 242 SFLYGF 247 F F Sbjct: 244 MFQESF 249 >gi|120598262|ref|YP_962836.1| flagellar biosynthesis protein FliR [Shewanella sp. W3-18-1] gi|146293660|ref|YP_001184084.1| flagellar biosynthesis protein FliR [Shewanella putrefaciens CN-32] gi|120558355|gb|ABM24282.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1] gi|145565350|gb|ABP76285.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32] gi|319427059|gb|ADV55133.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens 200] Length = 265 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + RV S +M++ + P +VRL AMA + + P L + F A Sbjct: 11 TIASYMWPLFRVASMLMVMVVFGAATTPARVRLLLAMAITFAIAPVLPPVENADLFSLSA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + ++ TG +I L + + + + Sbjct: 71 VFITA--QQIIIGVAMGFVSQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + LV S+ T+PI + + S F L +S Sbjct: 129 FLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMFGAALTMSI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F + Sbjct: 189 SAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFDEVWAAA 247 >gi|330808230|ref|YP_004352692.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376338|gb|AEA67688.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 260 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S L + RV + +M +P + +P +VRL FA+A ++V+ P L + A Sbjct: 14 WVASFVLPLFRVTAVLMSMPVFGTTLVPRRVRLYFALAITVVIAPGLPPMPSVHALDLSA 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV ++ +G + G ++++ G +IS +G+ + + ++ + + Sbjct: 74 LM--LVAEQILIGTLMGFSLQLFFQAFVVAGQIISIQMGMAFASMVDPTNGVTTAVIGQF 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L ++ H VF L +S+ T+P+G L N F L + L Sbjct: 132 LTMLVTLLFLAMNGHLVVFEVLTESFTTMPVGSALLV-NHFWEIAGKLGWVLGAAMVLVL 190 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P ++ LG + +S+ I+ Q+ Sbjct: 191 PAITALLVVNIAFGVMTRAAPQLNIFSIGFPLILTLGMVIFWISLGDILNQYQ 243 >gi|62317950|ref|YP_223803.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 1 str. 9-941] gi|83269927|ref|YP_419218.1| flagellar biosynthesis protein FliR [Brucella melitensis biovar Abortus 2308] gi|189023201|ref|YP_001932942.1| flagellar biosynthesis protein FliR [Brucella abortus S19] gi|237817495|ref|ZP_04596486.1| flagellar biosynthetic protein FliR [Brucella abortus str. 2308 A] gi|254691620|ref|ZP_05154874.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 6 str. 870] gi|254695084|ref|ZP_05156912.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 3 str. Tulya] gi|254698181|ref|ZP_05160009.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 2 str. 86/8/59] gi|254731626|ref|ZP_05190204.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 4 str. 292] gi|256256807|ref|ZP_05462343.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 9 str. C68] gi|260544134|ref|ZP_05819955.1| flagellar biosynthesis protein FliR [Brucella abortus NCTC 8038] gi|260757250|ref|ZP_05869598.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 6 str. 870] gi|260759385|ref|ZP_05871733.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 4 str. 292] gi|260762628|ref|ZP_05874960.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 2 str. 86/8/59] gi|260883054|ref|ZP_05894668.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 9 str. C68] gi|261215436|ref|ZP_05929717.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 3 str. Tulya] gi|297250158|ref|ZP_06933859.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 5 str. B3196] gi|62198143|gb|AAX76442.1| hypothetical FliR, flagellar biosynthesis protein [Brucella abortus bv. 1 str. 9-941] gi|82940201|emb|CAJ13254.1| Bacterial export protein, family 1:Flagellar biosynthesis protein FliR [Brucella melitensis biovar Abortus 2308] gi|189021775|gb|ACD74496.1| Flagellar biosynthesis protein FliR [Brucella abortus S19] gi|237787330|gb|EEP61547.1| flagellar biosynthetic protein FliR [Brucella abortus str. 2308 A] gi|260097405|gb|EEW81279.1| flagellar biosynthesis protein FliR [Brucella abortus NCTC 8038] gi|260669703|gb|EEX56643.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 4 str. 292] gi|260673049|gb|EEX59870.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 2 str. 86/8/59] gi|260677358|gb|EEX64179.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 6 str. 870] gi|260872582|gb|EEX79651.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 9 str. C68] gi|260917043|gb|EEX83904.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 3 str. Tulya] gi|297174027|gb|EFH33391.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 5 str. B3196] Length = 255 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 137/241 (56%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QV L A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVCLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTH 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|253996311|ref|YP_003048375.1| flagellar biosynthetic protein FliR [Methylotenera mobilis JLW8] gi|253982990|gb|ACT47848.1| flagellar biosynthetic protein FliR [Methylotenera mobilis JLW8] Length = 263 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 111/241 (46%), Gaps = 3/241 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++SL + R+ + I ++P LS + IP +V+L ++ +I+++P + + F Sbjct: 10 QTWVISLLWPLTRILAVIAIVPILSHATIPRRVKLGLSVLLTIIIVPTIPPLPQFEAFSL 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +++ ++ +G G +R+ + G +I +GL + T LN Sbjct: 70 EGLL--ILVQQVIIGFAIGFSMRLVFAAVDLAGQLIGLTMGLGFAQFFDPQTNGQSTALN 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ ++ +L +D H + A+ +S+ T+PIG + T F L L Sbjct: 128 QLLVLLAMLIFLSLDGHLIIVSAMARSFITMPIGLGGAGIDAMQ-IALWGNTIFSAGLML 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P + ++ N+++G+L + PQ+ ++ I P + +G + + LS+ ++ Sbjct: 187 ALPAVCALLITNMALGILTRTAPQLNLFGIGFPITLSMGFVVVALSLSSMLQPIIKFIEQ 246 Query: 246 G 246 G Sbjct: 247 G 247 >gi|182418459|ref|ZP_02949753.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium butyricum 5521] gi|237666957|ref|ZP_04526942.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377841|gb|EDT75385.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium butyricum 5521] gi|237658156|gb|EEP55711.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 612 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 98/229 (42%), Gaps = 1/229 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +FLI R+ S + S P+ + F++ + ++ + D + + Sbjct: 7 FLGIFLIFLRISSYFVATNIFFPSGTPIMFKTGFSIIIAYGIILGV-DHSTILAIDSNYM 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + G + + + GS I G ++ T + + + T + +L Sbjct: 66 IAFYIISEVLTGLILGYITNLVFQAAKLAGSWIDIHAGFSMVTVLDPATQTSTTLMGNLF 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L+ ++I+ + ++ +S +P+G + + + F++ ++++ P Sbjct: 126 YFVSLVFFFMINGQELIVKSIYESISIVPLGHTIVYQETVMGAAETIVDFFVLGVKIALP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + ++ +I +GL+ + VP IPI P LG + + + ++ Sbjct: 186 IVLIIVMTDICLGLITRTVPTIPIMIFGMPIKNILGFITFLIIMPTMLK 234 >gi|311695201|gb|ADP98074.1| flagellar biosynthesis protein FliR [marine bacterium HP15] Length = 261 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 94/229 (41%), Gaps = 2/229 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + R+ S +M++P +P ++RL A+ +I++ P + ++ A L Sbjct: 19 LWPLFRLASFLMVIPIFGTQLVPARIRLGLALLMTILIAPMIPPVPQVEALSADAVVITL 78 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G G + G +I+ +GL + + ++ + L+ + I Sbjct: 79 --QQILIGVGMGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVNVPVLSQIYTITI 136 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L ++ H F ++S+ T+PIG E + + F + L+ P + Sbjct: 137 TLLFLAMNGHLVAFEVFIESFRTLPIGMEGLGQTGIWELAHRISWMFASAMLLALPAVTA 196 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ NIS G++ + PQ+ I+ + P + G + + + F Sbjct: 197 VLIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFDQ 245 >gi|237799250|ref|ZP_04587711.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022105|gb|EGI02162.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 258 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 112/233 (48%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + R+ + + +P + + +P +VR+ A A ++V+ P L D +Q A Sbjct: 12 WVAAFMLPLFRIIALLTTMPVIGTTLVPRRVRMYLAFAITVVVAPALPDMPPVQALDLSA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ + Sbjct: 72 LL--LIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ ++P+G L N F N L LRL Sbjct: 130 FTLLVTLLFLSMNGHLVVLEILVESFTSMPVGSGLLVNN-FWELANGLGWVLGSGLRLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NI+ G++ + PQ+ I+ I P + +G + L +++ I+ Q+ Sbjct: 189 PAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWMTMGDILNQYQ 241 >gi|13472611|ref|NP_104178.1| flagellar biosynthesis protein FliR [Mesorhizobium loti MAFF303099] gi|14023357|dbj|BAB49964.1| flagellar biosynthesis protein; FliR [Mesorhizobium loti MAFF303099] Length = 250 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 136/245 (55%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I Sbjct: 1 MSVLSQSVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDRIIP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 +++ EL +G + G + R+Y L+F GS I+ IG I + Sbjct: 61 FVDPRPQILVPMIISELLIGGLIGAMTRLYMEALRFMGSAIAMLIGYGGSGGPAIEEPEP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L ++I LL L+V DF H++ ALV SY P+ N + + TF Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIVRALVASYTVAPVNVFFNPQAALVDITDTVSDTFF 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +++RL SPF+ + I+ N++IG +NKL PQIPIYFIS P++I G + +I ++ F Sbjct: 181 LVIRLGSPFVAYAILVNLTIGFVNKLTPQIPIYFISQPFVIAGGMIIFYFAIGTMLSLFV 240 Query: 241 HSFLY 245 F+ Sbjct: 241 DGFVD 245 >gi|17988512|ref|NP_541145.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. 16M] gi|225686878|ref|YP_002734850.1| flagellar biosynthesis protein FliR [Brucella melitensis ATCC 23457] gi|256261987|ref|ZP_05464519.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 2 str. 63/9] gi|17984304|gb|AAL53409.1| flagellar biosynthetic protein flir [Brucella melitensis bv. 1 str. 16M] gi|225642983|gb|ACO02896.1| flagellar biosynthetic protein FliR [Brucella melitensis ATCC 23457] gi|263091471|gb|EEZ16007.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 2 str. 63/9] gi|326411294|gb|ADZ68358.1| flagellar biosynthesis protein FliR [Brucella melitensis M28] gi|326554583|gb|ADZ89222.1| flagellar biosynthesis protein FliR [Brucella melitensis M5-90] Length = 255 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 137/241 (56%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +L + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLLLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTH 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|319406958|emb|CBI80595.1| Flagellar biosynthetic protein fliR [Bartonella sp. 1-1C] Length = 261 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 129/239 (53%), Gaps = 1/239 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFV 64 E ++ LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + ++ L + Sbjct: 15 EQLVTIALLIFARVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTESFKVLGDKP 74 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 N A + + E+ +G G++ Y LQF S+I +IG + Q I +S E+ + Sbjct: 75 NLALLVRSLFAEMLIGSTFGIIAHAYLWALQFMASIIGMSIGFSGQPGHSIIESTPESHV 134 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ ++ + D H L+ SY +P+ N + + L F+ L Sbjct: 135 ANVLVFAAIILFFASDLHIITIQGLLASYDIVPLAFIPNPEAALTDYHEALSRAFLTTLS 194 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++PF+ + I+ NI+IGLLNKL P IP+YFIS P+++ G L + I +++ F+ F Sbjct: 195 IAAPFIIYAILINITIGLLNKLTPTIPVYFISLPFVMCGGLFLLYILIPELLHLFNSEF 253 >gi|302384125|ref|YP_003819948.1| flagellar biosynthetic protein FliR [Brevundimonas subvibrioides ATCC 15264] gi|302194753|gb|ADL02325.1| flagellar biosynthetic protein FliR [Brevundimonas subvibrioides ATCC 15264] Length = 257 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 114/230 (49%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI R+G+ ++ LPG+ SY+P ++RL A+ S+ L P + ++ + Sbjct: 15 LIFARIGAILLSLPGIGESYVPPRIRLSLALVVSLALWPIVSPSLPALPETIGG-MVGWI 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ G + G ++R +T L G ++S L+ + + +++ + I+G Sbjct: 74 IREVVTGLMIGAILRAFTGALATAGEIVSLQTTLSFAQTANPLQAQPGATISAFLMILGT 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + ++ + HH LV SY I + L + + + +FM+ ++L++P + F Sbjct: 134 VLVFATNTHHLFIAGLVGSYELIAPARPLIMADFTELAIRTIADSFMLGVQLAAPVIVFA 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++FN++ GL+ +++PQ ++F + P + LG LS+ ++ F + Sbjct: 194 LIFNLASGLVARVMPQFQVFFAAAPLSVILGLSIFALSLGVMGTVFIDRY 243 >gi|313896132|ref|ZP_07829686.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 137 str. F0430] gi|320529416|ref|ZP_08030504.1| flagellar biosynthetic protein FliR [Selenomonas artemidis F0399] gi|312975557|gb|EFR41018.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 137 str. F0430] gi|320138382|gb|EFW30276.1| flagellar biosynthetic protein FliR [Selenomonas artemidis F0399] Length = 260 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 108/242 (44%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + + L++ R+ ++ P IPM R+ A+A S+VL P + + + Sbjct: 8 QGHIAAFLLMLTRISGIFLISPFFGSMNIPMFFRVGIALAMSVVLFPVVDGLGTPETPPS 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + V+ ELF+G + G + + + G V+ +G + + + + Sbjct: 68 IIMFGAAVLGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAVVNVVDPTSGQQIPLIG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 S + + ++ L V + HH + ALV+S+ +P+ ++ N T F+ +++ Sbjct: 128 SFLYNLAVIILLVTNGHHMLIAALVESFRAVPLAGLEANISLALIIANFTGTIFLTGMKI 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F ++ N+ +G+L++ +PQ+ I+ + P + +G L + + V F Sbjct: 188 AMPITFAILLTNVGLGILSRTMPQMNIFVVGIPMQLMIGLFVLSMIMPFYVLFLDVLFNE 247 Query: 246 GF 247 + Sbjct: 248 MY 249 >gi|23099028|ref|NP_692494.1| flagellar biosynthesis protein FliR [Oceanobacillus iheyensis HTE831] gi|22777256|dbj|BAC13529.1| flagellar protein required for flagellar formation [Oceanobacillus iheyensis HTE831] Length = 259 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 105/242 (43%), Gaps = 6/242 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + LI RV + +++P S +P+Q ++ + +I+++ + D Sbjct: 9 TLPAFLLIFVRVLAFFVIMPLFSYRSVPVQFKIGISFFLAIIMISTV----DTAGIAVNN 64 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y L++ E+ +G GL+ + +Q G I +G + + Sbjct: 65 LYIFLIVKEILVGICIGLIAYIIVSAIQVAGGFIDFQMGFAIANVVDPQTGAQSPLTGQY 124 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRL 185 + II LL L ++ HH + + SY IP+ Q L FG +I + T F++ ++ Sbjct: 125 LYIISLLFLLSVNGHHIIIDGIFNSYSYIPLNQFLPFGEESIVQFVLTTFNTMFLVAFQI 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P + + ++++G++ + VPQ+ ++ + P I + + + + + + F Sbjct: 185 AIPIVGCLFLVDVALGIIARTVPQMNVFVVGLPLKILVSFAAILVFLALYINLAQRLFET 244 Query: 246 GF 247 + Sbjct: 245 MY 246 >gi|188592194|ref|YP_001796792.1| flir: flagellar biosynthesis inner membrane protein. flir/mope/spar family. [Cupriavidus taiwanensis LMG 19424] gi|170938568|emb|CAP63555.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Cupriavidus taiwanensis LMG 19424] Length = 265 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 100/245 (40%), Gaps = 6/245 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + I P S IP + ++ + ++V+ P + + + Sbjct: 11 GWLAAFLWPFFRILALIGTAPLFGESTIPRRAKIALSALIAMVVSPTIAQVPVVPVYSFG 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +++ E+ +G G ++R+ +Q G +I +GL+ + + L+ Sbjct: 71 GLM--IILNEVGIGLATGFVMRLVFATVQQAGEIIGLQMGLSFASFFDRAAGGQTMVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPI----GQELNFGNIFSSFVNMLQTTFMIM 182 + +I +L +D H + ALV S+ ++PI G + F Sbjct: 129 FLNLIAVLLFLALDGHLLMLGALVDSFNSLPIGGNPGGTPLSAGGAMAVARAGGMVFASG 188 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 L L+ P + ++ N+++G+LN+ PQ+ I+ + P + G L L L + + H Sbjct: 189 LLLALPMIAALLILNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLMLVMPQMGSYMQHM 248 Query: 243 FLYGF 247 G Sbjct: 249 IEAGL 253 >gi|332305671|ref|YP_004433522.1| flagellar biosynthetic protein FliR [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173000|gb|AEE22254.1| flagellar biosynthetic protein FliR [Glaciecola agarilytica 4H-3-7+YE-5] Length = 259 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 95/235 (40%), Gaps = 2/235 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + L R+ + + GLS +P VR + ++++LP + + F + Sbjct: 15 MLLPFMRISGMLATMVGLSAKTVPTTVRALLTLFITLIILPVIPPVQVDEVFSVGTFM-- 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ +L +G G + + G V++ GL + + + + + I+ Sbjct: 73 LVIQQLIIGISLGFISTMVLNTFVLAGQVVAMQTGLGFASIVDPVNGINVPAVGQFYLIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L W +D H + +V S+ P+G+ F + F+ + LS + Sbjct: 133 ATLLFWALDGHLAMIRMVVMSFTAFPVGEAWLQPEQFREIAHWAGWMFISAVTLSLAPIV 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 ++ N++ G++ K PQ+ I+ + +G + + ++++ Y F + Sbjct: 193 SLLIVNLAFGVMTKAAPQLNIFSLGFSIAQIMGLVIIWITMDNFTYHFEVQWDRA 247 >gi|23016624|ref|ZP_00056378.1| COG1684: Flagellar biosynthesis pathway, component FliR [Magnetospirillum magnetotacticum MS-1] Length = 254 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 ++ + FL+ R+G+ +ML PGL S + ++RL A+A + V++P + Sbjct: 7 QLDIFRFFLVFTRIGAALMLFPGLGGSLVSTRIRLLLALAVAFVIMPVVAPVFPAVPKSV 66 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 V E +G G ++ L GS+I GL S L Sbjct: 67 GGMLLS-VFGEAVVGAYIGTVVMFIMSTLNMAGSMIGYQTGLTNAFSFDPISQQQSQLLT 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + IGL+A++ D HH +F A +SY P GQ L FG+ + ++ TF + + Sbjct: 126 GFLSNIGLVAVFATDLHHLMFQAAYESYALFPPGQPLQFGDYAETLGHLATDTFKVGTQF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++P + F +VF +GLL++LVPQ+ ++F++ P + +G ++I +++ F F Sbjct: 186 AAPLVVFGLVFYTGLGLLSRLVPQLQVFFVAMPVQVMVGMWLFMVTIPLVISLFLRFFES 245 Query: 246 GF 247 G Sbjct: 246 GL 247 >gi|147678409|ref|YP_001212624.1| flagellar biosynthesis protein FliR [Pelotomaculum thermopropionicum SI] gi|146274506|dbj|BAF60255.1| flagellar biosynthesis pathway, component FliR [Pelotomaculum thermopropionicum SI] Length = 254 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 2/227 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + FL+ R + + P ++ +P ++ F +A + V+ P L L ++ Sbjct: 7 LAAFFLVFLRTAAFMTAGPLYALRGVPPLLKAAFCLALAAVIFPVLDLNEPLP--LDAWG 64 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y E LG + G + + + G +I IG ++ T L+ + Sbjct: 65 YGLAAARETGLGLLLGTAVTMILNSFRMAGQIIDFQIGYSMAALADPQYGTQNTLLSQYL 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ V+D H+ + LV+SY +P+ + G S + M +F I L++S+P Sbjct: 125 YLLALVFFLVVDGHYSLIAGLVESYRLVPLNAAVFNGAAASVLLRMFSGSFAIALQVSAP 184 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L ++ ++++G L + PQ+ ++ P I G L L I ++ Sbjct: 185 VLAVLVICDLTLGFLARTAPQLNVFLTGFPVKIAAGLLTLSFLIPLL 231 >gi|149377873|ref|ZP_01895602.1| Flagellar biosynthesis pathway, component FliR [Marinobacter algicola DG893] gi|149357815|gb|EDM46308.1| Flagellar biosynthesis pathway, component FliR [Marinobacter algicola DG893] Length = 260 Score = 151 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 95/229 (41%), Gaps = 2/229 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + R+ S +M++P + +P +VRL A+ +I+++P + + F L Sbjct: 18 LWPLFRLVSFMMVIPFIGTQLVPARVRLGLALIITILVVPMIPPVPQVDAFSADGVVITL 77 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G G + G +I+ +GL + + ++ ++ L + I Sbjct: 78 --QQILIGVGMGFALTALFQLFVVAGQMIAMQMGLGFASMVDPANGVSVPVLAQIYTITI 135 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L ++ H F ++S+ T+PIG E + + F+ + L+ P + Sbjct: 136 TLLYLAMNGHLVAFEVFIESFRTMPIGLEGLGQAGVWQLAHRISWIFVSAVLLALPAVTA 195 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + NIS G++ + PQ+ I+ + P + G + + + F Sbjct: 196 VFIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFEQ 244 >gi|77457778|ref|YP_347283.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens Pf0-1] gi|77381781|gb|ABA73294.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens Pf0-1] Length = 261 Score = 151 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 106/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV S +M++P + +P ++RL FA A ++V+ P L + Sbjct: 15 WVATFMLPLFRVASMLMVMPVFGTTLVPRRIRLYFAFAITVVITPNLPPMPAVSPLDLSG 74 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ ++ +G V G ++++ G +++ +G+ + + ++ ++ + Sbjct: 75 LL--LIAEQILVGAVLGFSLQLFFQAFVVAGQIVAIQMGMGFASMIDPTNGVSVAVIGQF 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H VF L +S+ T+P+G L + + L L L Sbjct: 133 FTMLVTLLFLSMNGHLVVFEVLTESFTTLPVGGGLMTTH-YWELAGKLGWVLGAALLLVL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + + + I+ Q+ Sbjct: 192 PAVTALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGLFIVWVGLADILNQYQ 244 >gi|91792696|ref|YP_562347.1| flagellar biosynthesis protein FliR [Shewanella denitrificans OS217] gi|91714698|gb|ABE54624.1| flagellar biosynthetic protein FliR [Shewanella denitrificans OS217] Length = 267 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 2/236 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + + R+ S +M++ + P +VRL A+AF+ + P L + +++ F A Sbjct: 11 TIAAYLWPLFRISSMLMIMAVFGANTTPSRVRLMLAVAFTFAIAPVLPEIKNVELFAFSA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L ++ +G V G + + TG +I L + + + + Sbjct: 71 VFITL--QQILIGAVMGFVTLMLMQTFVLTGQIIGMQTSLGFASMVDPGSGEQTPVVGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ID H +F +V S+ +IP+ + + F L +S Sbjct: 129 FLLLATLIFLSIDGHLLMFRMIVASFESIPVSNQGIEIANYKILAEWGGYMFGAALTMSM 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ N+S G++ + PQ+ I+ I P + G L L L++ I+ F + Sbjct: 189 SAIVALLLINLSFGVMTRAAPQLNIFSIGFPVTMVSGLLILWLTLGPIMAHFDEVW 244 >gi|319781654|ref|YP_004141130.1| flagellar biosynthetic protein FliR [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167542|gb|ADV11080.1| flagellar biosynthetic protein FliR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 250 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 136/245 (55%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I Sbjct: 1 MSVLSQGVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDKIFP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 +++ EL +G + G + R+Y L+F GS I+ +G I + Sbjct: 61 FVDPRPQILVPMIISELLVGGLIGAMTRLYMEALRFMGSAIAMLVGYGGTGGPAIEEPEP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L ++I LL L+V DF H++ ALV SY P+ N + + TF Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIIRALVSSYTVAPVNIFFNPQAALVDVTDTVSDTFF 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +++RL SPF+ + I+ N++IG +NKL PQIPIYFIS P++I G + ++ ++ F Sbjct: 181 LVIRLGSPFVAYAILVNLTIGFVNKLTPQIPIYFISQPFIIAGGMIIFYFAVGTMLSLFV 240 Query: 241 HSFLY 245 F+ Sbjct: 241 DGFVD 245 >gi|320085401|emb|CBY95182.1| Flagellar biosynthetic protein fliR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 290 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 38 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 94 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 95 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 154 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 155 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 214 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 215 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 274 >gi|261821161|ref|YP_003259267.1| flagellar biosynthesis protein FliR [Pectobacterium wasabiae WPP163] gi|261605174|gb|ACX87660.1| flagellar biosynthetic protein FliR [Pectobacterium wasabiae WPP163] Length = 261 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 101/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F R+ + I P + I +V++ + ++++ P+L V Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGVLITLLVAPYLPLNTTPIFSVAGV 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G GL +++ ++ G +I +GL T + + Sbjct: 72 W---LLIQQILIGITLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMPVIARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ +L D H + L S+ T+PI + F + F+ L L+ Sbjct: 129 LNILAILLFLTFDGHLWLISLLADSFHTLPISTSPINSHAFLALARAGGLIFINGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ I+ + P + +G + L L + +I H F F Sbjct: 189 PIITLLLTINLALGMLNRMAPQLSIFVVGFPITLTVGIMTLGLLLPLIPPFAEHLFSEVF 248 >gi|90579939|ref|ZP_01235747.1| flagellar biosynthesis protein [Vibrio angustum S14] gi|90438824|gb|EAS64007.1| flagellar biosynthesis protein [Vibrio angustum S14] Length = 260 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 96/240 (40%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M + ++ ++RL A+A + +LP L ++ A Sbjct: 11 WIANYFWPFTRISSMMMAMTFFGARFVSPKIRLYLALAITFAVLPVLPKVPQDIELLSLA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + +L +G GL+ + T G ++ L + + ++ L Sbjct: 71 GFI-VTTQQLIIGVAMGLVTQFITQIFVLLGQILGMQSSLGFASMVDPANGQNTPVLGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L D H ++ A+V S+ T+PIG+ + + F + ++ Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVLSFKTLPIGEAMLQPKDYYQLAGWFGHMFKAGVNMAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N+S G++ + PQ+ I+ + + + LG + IV Q+ + G Sbjct: 190 AGVIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLGIVPQYEAIWQVGL 249 >gi|217972628|ref|YP_002357379.1| flagellar biosynthesis protein FliR [Shewanella baltica OS223] gi|217497763|gb|ACK45956.1| flagellar biosynthetic protein FliR [Shewanella baltica OS223] Length = 265 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + + RV S +M++ + P +VRL AMA + + P L + F A Sbjct: 11 TITAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLSA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + ++ TG +I L + + + + Sbjct: 71 VFITA--QQIIIGVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + LV S+ T+PI + + + + F L +S Sbjct: 129 FLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALADWGSYMFGAALTMSI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L++ ++ F + Sbjct: 189 SAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHFDEVWAAA 247 >gi|323136993|ref|ZP_08072073.1| type III secretion system inner membrane R protein [Methylocystis sp. ATCC 49242] gi|322397754|gb|EFY00276.1| type III secretion system inner membrane R protein [Methylocystis sp. ATCC 49242] Length = 250 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 1/243 (0%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 E + F+I CR+G C+M+ PG S +P+++RL A+ ++ L P L DT+ Sbjct: 1 MTPLESAIAPTFIIFCRIGGCLMVAPGFSSERVPVRIRLYIAIGVTLALAPALIDTLQPG 60 Query: 62 N-FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + ++M EL +G GLL R+Y L L+ + ++ IGL + ++ Sbjct: 61 LRGADPLKLGAIIMGELTIGVFIGLLARLYFLALETLATAVAMTIGLGNIFGSALIEAEP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 L++ + I ++ ++V D H ++ L SY T P+ + + +L +++ Sbjct: 121 APALSTFVVICAIMLVFVTDQHLEMIRGLYLSYQTTPVFSPAAPESYLNELTRVLTQSYL 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + LR+SSPFL F ++ N++ G L +L PQ+P+YFIS P++I LG + + FS Sbjct: 181 LALRISSPFLLFGLIVNLAFGFLARLTPQVPVYFISGPFVIVLGIYGFSIVAQDFFTAFS 240 Query: 241 HSF 243 F Sbjct: 241 GQF 243 >gi|256112184|ref|ZP_05453105.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 3 str. Ether] gi|265993611|ref|ZP_06106168.1| flagellar biosynthetic protein FliR [Brucella melitensis bv. 3 str. Ether] gi|262764481|gb|EEZ10513.1| flagellar biosynthetic protein FliR [Brucella melitensis bv. 3 str. Ether] Length = 255 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 135/241 (56%), Gaps = 1/241 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +L + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLLLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFPA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ +H Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFVTH 245 Query: 242 S 242 Sbjct: 246 E 246 >gi|89075525|ref|ZP_01161936.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] gi|89048797|gb|EAR54368.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] Length = 260 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 95/240 (39%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M + ++ ++RL A+A + +LP L ++ A Sbjct: 11 WIANYFWPFTRISSMVMAMTFFGARFVSPKIRLYLALAITFAVLPVLPKVPQDIELLSLA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +L +G GL+ + T G ++ L + + ++ L Sbjct: 71 GFIVTT-QQLIIGVAMGLVTQFITQIFVLLGQILGMQSSLGFASMVDPANGQNTPVLGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L D H ++ A+V S+ T+PIG+ + + F + ++ Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVVSFKTLPIGEAMLQPKDYYQLAGWFGHMFKAGVNMAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N+S G++ + PQ+ I+ + + + LG + I+ Q+ + G Sbjct: 190 AGVIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLGILPQYEAIWQVGL 249 >gi|116694512|ref|YP_728723.1| flagellar biosynthesis protein [Ralstonia eutropha H16] gi|113529011|emb|CAJ95358.1| flagellar biosynthesis protein [Ralstonia eutropha H16] Length = 261 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 97/240 (40%), Gaps = 2/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + R+ + I P S IP + ++ + ++V+ P + + + Sbjct: 12 WLAAFLWPFFRILALIGTAPLFGESTIPRRAKIALSAMVAVVVSPTIAQLPVVPVYSFGG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +++ E+ +G G +R+ +Q G +I +GL+ + + L+ Sbjct: 72 LM--IILNEVGIGLATGFAMRLVFATVQQAGEIIGLQMGLSFASFFDRAAGGQTMVLSRF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +I +L +D H + ALV S+ +PIG + F L L+ Sbjct: 130 LNLIAMLLFLALDGHLLMLGALVDSFSGLPIGGTPLSAGGAMAVARAGGMVFSSGLLLAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN+ PQ+ I+ + P + G L L L + + H G Sbjct: 190 PMIAALLTLNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLMLVMPQMGTYMQHMIGAGL 249 >gi|167034910|ref|YP_001670141.1| flagellar biosynthesis protein FliR [Pseudomonas putida GB-1] gi|166861398|gb|ABY99805.1| flagellar biosynthetic protein FliR [Pseudomonas putida GB-1] Length = 258 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 107/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV + +M +P +P +VRL A+A ++V++P L + R Sbjct: 12 WVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ +G + GL +++ G +++ +G+ + + ++ + T ++ Sbjct: 72 LL--LCAEQIIVGALFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPANGVNVTVISQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + +++ H VF L +S+ T+P+G L N F + F L L Sbjct: 130 MTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFAAGLLLIL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + LG + + ++ + Sbjct: 189 PVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMFIFWVGLADVLSHYQ 241 >gi|126175116|ref|YP_001051265.1| flagellar biosynthesis protein FliR [Shewanella baltica OS155] gi|153001440|ref|YP_001367121.1| flagellar biosynthesis protein FliR [Shewanella baltica OS185] gi|160876165|ref|YP_001555481.1| flagellar biosynthesis protein FliR [Shewanella baltica OS195] gi|304409947|ref|ZP_07391566.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183] gi|307302340|ref|ZP_07582098.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175] gi|125998321|gb|ABN62396.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155] gi|151366058|gb|ABS09058.1| flagellar biosynthetic protein FliR [Shewanella baltica OS185] gi|160861687|gb|ABX50221.1| flagellar biosynthetic protein FliR [Shewanella baltica OS195] gi|304351356|gb|EFM15755.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183] gi|306914378|gb|EFN44799.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175] gi|315268361|gb|ADT95214.1| flagellar biosynthetic protein FliR [Shewanella baltica OS678] Length = 265 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + + RV S +M++ + P +VRL AMA + + P L + F A Sbjct: 11 TIAAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLSA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + ++ TG +I L + + + + Sbjct: 71 VFITA--QQIIIGVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + LV S+ T+PI + + + + F L +S Sbjct: 129 FLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALADWGSYMFGAALTMSI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L++ ++ F + Sbjct: 189 SAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHFDEVWAAA 247 >gi|308173600|ref|YP_003920305.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7] gi|307606464|emb|CBI42835.1| component of the flagellar export machinery [Bacillus amyloliquefaciens DSM 7] gi|328553468|gb|AEB23960.1| flagellar biosynthesis protein FliR [Bacillus amyloliquefaciens TA208] gi|328911741|gb|AEB63337.1| component of the flagellar export machinery [Bacillus amyloliquefaciens LL3] Length = 259 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 95/236 (40%), Gaps = 6/236 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P +P R+ FA S++ L + Y Sbjct: 10 AFLLVFIRISAFFVTVPVFGHRNLPAVHRIGFAFFLSVICFSTLKHAPAID---IGEQYM 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E +G GL+ + +Q GS I +G ++ + + + Sbjct: 67 LLVIKEAVVGLSLGLIAFMMMAAIQIAGSFIDFQMGFSIANVIDPQSGTQSPLIGQFVYT 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSS 187 + LL + ++ H+ + + S+ IP+ Q F+I ++S+ Sbjct: 127 LALLFMLSVNAHYLLLDGIYYSFQYIPLDQAFPSFGNDRFGLFIAKSFNAMFIIAFQMSA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ + F Sbjct: 187 PVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMAVMFVIVRNIF 242 >gi|260466592|ref|ZP_05812780.1| flagellar biosynthetic protein FliR [Mesorhizobium opportunistum WSM2075] gi|259029598|gb|EEW30886.1| flagellar biosynthetic protein FliR [Mesorhizobium opportunistum WSM2075] Length = 250 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 136/245 (55%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I Sbjct: 1 MSVLSQSVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDKIFP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 +++ EL +G + G + R+Y L+F GS I+ IG I + Sbjct: 61 FVDARPQILVPMIISELLVGGLIGAMTRLYMEALRFMGSAIAMLIGYGGSGGPAIEEPEP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L ++I LL L+V DF H++ ALV SY P+ N + + TF Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIIRALVTSYTVAPVNIFFNPQAALVDVADTVSDTFF 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +++RL SPF+ + ++ N++IG +NKL PQIPIYFIS P++I G + +I ++ F Sbjct: 181 LVIRLGSPFVAYALLVNLTIGFVNKLTPQIPIYFISQPFVIVGGMIIFYFAIGTMLSLFV 240 Query: 241 HSFLY 245 F+ Sbjct: 241 DGFVD 245 >gi|302392377|ref|YP_003828197.1| flagellar biosynthetic protein FliR [Acetohalobium arabaticum DSM 5501] gi|302204454|gb|ADL13132.1| flagellar biosynthetic protein FliR [Acetohalobium arabaticum DSM 5501] Length = 258 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 104/234 (44%), Gaps = 1/234 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI+ R+ + P IP +++ A +++L P + D +L+ N Sbjct: 14 LIMLRLTGLFLTAPFFGSRVIPKRIKAALAFLVTLILSPVV-DGSNLELPTNILILLFNF 72 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + EL +G + G + + +Q G +IS +GL + M + + + ++ Sbjct: 73 LSELTIGLIFGFITILIFASIQLAGQMISMRMGLAMANIMDPMNGSSIAVIGQFKNVLAT 132 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 L VI+ HHQ+ AL S+ IP+ +F + M F + +++ P + Sbjct: 133 LLFLVINGHHQLLRALKHSFDVIPLTGLRISDALFMKLLRMAGDLFPLAFQIALPIIAAL 192 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + +++ GL+ + VPQ+ ++ + P + +GSL L +++ + + F F Sbjct: 193 FLTDVAFGLVARTVPQMNVFVMGLPTKLLVGSLLLLITVPVYISLIRGLFDDLF 246 >gi|114562372|ref|YP_749885.1| flagellar biosynthesis protein FliR [Shewanella frigidimarina NCIMB 400] gi|114333665|gb|ABI71047.1| flagellar biosynthetic protein FliR [Shewanella frigidimarina NCIMB 400] Length = 267 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 99/239 (41%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L R+ S +M++ + P +VRL ++A ++ + P L +++ + Sbjct: 11 TIAAYLLPFFRISSMLMVMAVFGANTTPARVRLMLSVAITMAVAPILPPIENVELLALSS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G + + TG +I L + + +++ Sbjct: 71 VFV--IAQQILIGVTMGFVTLMVMQTFVLTGQIIGMQTSLGFASMVDPGSGEQTPVVSNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + LV S+ TIPI + + + + F L +S Sbjct: 129 FLLLATLIFLAVDGHLLMIRMLVASFETIPISNQGISIANYRALADWGSFMFGSALTMSI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L L++ I+ F ++ Sbjct: 189 SAIVALLLINLSFGVMTRASPQLNIFSIGFPVTMVSGLLILWLTLAPIMAHFDEVWMAA 247 >gi|88800469|ref|ZP_01116033.1| flagellar biosynthesis protein [Reinekea sp. MED297] gi|88776799|gb|EAR08010.1| flagellar biosynthesis protein [Reinekea sp. MED297] Length = 263 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 98/224 (43%), Gaps = 2/224 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + R+G+ +++P L IP++VRL A + + P L D ++ + Sbjct: 17 WVSHFMWPFFRLGAFFVIVPVLGARLIPVRVRLGLAFVITYTIYPLLPDMPIIEAVDVQT 76 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +++ ++ +G G L+ V G IS +GL + + ++ ++ L+ Sbjct: 77 FM--IILEQILIGTTLGFLVFVILQIFILAGQTISMQMGLGFASMVDPANGVSVAVLSQW 134 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L I+ H +V S+ T+P+GQ L + F L L+ Sbjct: 135 YQVLVTLVYLAINGHLLTLEVVVDSFYTLPVGQGLFTVESWRLLSEFGAWLFRASLMLAL 194 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 P + ++ N++ G++ + PQ+ ++ + P + G + + +S Sbjct: 195 PAVTALLLVNLTFGVMTRAAPQLNVFALGFPITMLGGLVIVWVS 238 >gi|227328346|ref|ZP_03832370.1| flagellar biosynthesis protein FliR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 261 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F R+ + I P + I +V++ ++++ P+L V Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGALITLLVAPYLPLNTTPIFSVAGV 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G GL +++ ++ G +I +GL T + + Sbjct: 72 W---LLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ +L D H + L S+ T+PI + F + F+ L L+ Sbjct: 129 LNILAILLFLTFDGHLWMISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ ++ + P + +G + L L + ++ H F F Sbjct: 189 PIITLLLTINLALGMLNRVAPQLSVFVVGFPITLTVGIMTLGLLLPLVPPFAEHLFSEVF 248 >gi|163750538|ref|ZP_02157776.1| flagellar biosynthesis protein [Shewanella benthica KT99] gi|161329693|gb|EDQ00682.1| flagellar biosynthesis protein [Shewanella benthica KT99] Length = 265 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 95/239 (39%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + RV S M++ + P++VR +MA + ++P L ++ F A Sbjct: 11 TIASYMWPLFRVSSMFMVMVVFGANTTPVRVRALLSMAITFAIVPVLPPVENVALFAASA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L +L +G G + + G +I L + + S + +L Sbjct: 71 IFITL--QQLLIGISMGFVTLMVMQCFVLAGQIIGMQTSLGFASMVDPSSGQQTPVIGNL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + +D H + LV S+ TIPI + + F L +S Sbjct: 129 FLLLTTMIFLAVDGHLVMIRMLVLSFETIPISDQGLSVTSYRLLAEWGGYMFGAALTMSM 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F + Sbjct: 189 TPIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLVILWLTLTPIMEHFGEVWTSA 247 >gi|325273554|ref|ZP_08139784.1| flagellar biosynthesis protein FliR [Pseudomonas sp. TJI-51] gi|324101314|gb|EGB98930.1| flagellar biosynthesis protein FliR [Pseudomonas sp. TJI-51] Length = 258 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 106/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV + +M +P +P +VRL A+A ++V++P L + R Sbjct: 12 WVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ +G + GL +++ G +++ +G+ + + + + T ++ Sbjct: 72 LL--LCAEQIIVGTLFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPGNGVNVTVISQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + +++ H VF L +S+ T+P+G L N F + F L L Sbjct: 130 MTMLVSVLFLLMNGHLVVFEVLTESFSTLPVGNALVV-NHFWELAGRMGWVFGAGLLLIL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + +G + + ++ + Sbjct: 189 PVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSHYQ 241 >gi|304438442|ref|ZP_07398382.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368525|gb|EFM22210.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 260 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 103/242 (42%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + L++ RV ++ P I + R+ A+A +I+L P + N Sbjct: 8 QGHIAVFLLMLVRVSGIFLISPFFGSMNISIYFRVGTALAITILLFPVVDGLGTPYVPEN 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + ELF+G + G + + + G V+ +G + + + + Sbjct: 68 VIMFGVTALGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQIPLIG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 S + + ++ L + HH + ALV+S+ +PI ++ N T F+ +++ Sbjct: 128 SFLYNLAVIVLLATNGHHMILAALVESFRVVPIAGMEGNLSLAMLIANFTGTIFLTGMKI 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F ++ N+ +G+L++ +PQ+ I+ + P + +G L + I V F Sbjct: 188 AMPITFAILLTNVGLGILSRTMPQMNIFVVGIPMQLMIGITVLSMIIPFYVLFLDVLFNE 247 Query: 246 GF 247 + Sbjct: 248 MY 249 >gi|330502778|ref|YP_004379647.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina NK-01] gi|328917064|gb|AEB57895.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina NK-01] Length = 258 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 109/234 (46%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L + R+ + +M++P + +P +VRL A+A S+VL+P L + R Sbjct: 11 GWVGQFLLPLFRIAAMLMVMPIIGTQLVPTRVRLYLALAISVVLVPTLPPMPQVDALSLR 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ ++ +G + G +++++ G +I+ +GL + + ++ ++ L Sbjct: 71 SLL--MILEQVLIGAMFGFILQLFFHLFAVAGQIIAMQMGLGFASMVDPTNGVSVPVLGQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ L I+ H V L +S+ ++P GQ + N + + L L L+ Sbjct: 129 FMLMLVTLLFLAINGHLVVLEILAESFISLPPGQGMMV-NHYWTLAGKLSWVIGAGLLLT 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V N++ G++ + PQ+ I+ I P + +G + + + F Sbjct: 188 LPMVTALLVINLAFGVMTRAAPQLNIFSIGFPLTLAMGLVIFWVGLSDFGSLFQ 241 >gi|254470011|ref|ZP_05083415.1| flagellar biosynthetic protein FliR [Pseudovibrio sp. JE062] gi|211960322|gb|EEA95518.1| flagellar biosynthetic protein FliR [Pseudovibrio sp. JE062] Length = 257 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 123/242 (50%), Gaps = 1/242 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +I++S L+ R+G+ IML+P ++IP++VRL A+ + V LP + + Sbjct: 10 VIVVSFLLMFARIGTMIMLVPAFGETFIPVRVRLTIALLLTYVFLPINSNLYPDDVMSSL 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-N 125 L+ EL +G GL +++ + L G++++ GL ++S + L Sbjct: 70 PKLLALLGGELMVGFFIGLSMKLISYALSVAGTIMANQSGLAFAMGGDATNSGQQGALMG 129 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + ++G+ ++V + H+ + A+ S+ P G L G++ + V + F + +RL Sbjct: 130 NFLNVLGICMVFVTNLHYVMIAAMQDSFVLFPPGNPLPVGDLSTLAVETVTHMFSVAVRL 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 +PF+ IVF S+GLLNKL+PQ+ I+FI+ P I +G L + ++ + F Sbjct: 190 GAPFIVVGIVFYFSLGLLNKLMPQMQIFFIAMPVNIMIGFGIFLLLLSTLMGYYLSEFRE 249 Query: 246 GF 247 Sbjct: 250 AL 251 >gi|319403941|emb|CBI77529.1| Flagellar biosynthetic protein fliR [Bartonella rochalimae ATCC BAA-1498] Length = 261 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 128/239 (53%), Gaps = 1/239 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFV 64 E ++ LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + ++ L + Sbjct: 15 EQLVTIALLIFARVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTESFKVLGDKP 74 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 N A + + E+ +G G++ Y LQF S+I +IG + Q I +S E+ + Sbjct: 75 NLALLVRALFAEMLIGSTFGVIAHAYLWALQFMASIIGMSIGFSGQPGHSIIESTPESHV 134 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ ++ + D H L+ SY +P+ N + + L F+ L Sbjct: 135 ANILVFAAVILFFASDLHIITIQGLLTSYDIVPLAFIPNPEAALTDYHEALSRAFLTTLS 194 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++PF+ + I+ NI+IGLLNKL P IP+YFIS P+++ G L + + +++ F+ Sbjct: 195 IAAPFIIYAILINITIGLLNKLTPTIPVYFISLPFVMCGGLFLLYILMPELLHLFNSEL 253 >gi|148546752|ref|YP_001266854.1| flagellar biosynthesis protein FliR [Pseudomonas putida F1] gi|148510810|gb|ABQ77670.1| flagellar biosynthetic protein FliR [Pseudomonas putida F1] Length = 258 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 107/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV + +M +P +P +VRL A+A ++V++P L + R Sbjct: 12 WVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ +G + GL +++ G +++ +G+ + + ++ + T ++ Sbjct: 72 LL--LCAEQIIVGALFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPANGVNVTVISQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + +++ H VF L +S+ T+P+G L N F + F L L Sbjct: 130 MTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLIL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + +G + + I+ + Sbjct: 189 PVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMAIFWIGLADILSHYQ 241 >gi|319405382|emb|CBI79001.1| Flagellar biosynthetic protein fliR [Bartonella sp. AR 15-3] Length = 259 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 131/239 (54%), Gaps = 1/239 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFV 64 E ++ L+ RVG+C+ML+PG+S IPM +RL ++FS+ +LP + D+ L + Sbjct: 15 EQLVTIALLVFSRVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTDSFKTLGDKP 74 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + A + + E+ +G + G++ Y LQF S+I +IG + Q S I++S E+ + Sbjct: 75 DLALLVRALFAEMLIGAILGIIAHAYLWALQFMASIIGMSIGFSGQPSHSITESTPESHV 134 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ ++ + D H L+ SY IP+ N + + L F+ L Sbjct: 135 ANVLVFATIILFFASDLHIITIQRLLASYDIIPLAFIPNPEAALTDYHEALSRAFLTTLS 194 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++PF+ + I+ NI+IGLLNKL P IP+YFIS P+++ G + + + +++ F+ Sbjct: 195 IAAPFIIYAILINITIGLLNKLTPTIPVYFISLPFVMCGGLFLIYILMPELLHLFNSEL 253 >gi|120554899|ref|YP_959250.1| flagellar biosynthesis protein FliR [Marinobacter aquaeolei VT8] gi|120324748|gb|ABM19063.1| flagellar biosynthetic protein FliR [Marinobacter aquaeolei VT8] Length = 261 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 2/229 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + R+ S +M++P +P +VRL A+ +I++ P + ++ A L Sbjct: 19 IWPLFRLASFLMVIPIFGTQLVPARVRLGLALLMTILIAPMIPPVPQVEALSADAVVITL 78 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G G + G +I+ +GL + + ++ + L + I Sbjct: 79 --QQILIGIGLGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVNVPVLAQIYTITI 136 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L V++ H F ++S+ T+PIG E + + + + F + L+ P + Sbjct: 137 TLLFLVMNGHLVAFEVFIESFYTLPIGLEGLGQDGVWALAHRISWMFASAMLLALPAVTA 196 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ NIS G++ + PQ+ I+ + P + G + + + F Sbjct: 197 VLIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFDQ 245 >gi|71906400|ref|YP_283987.1| flagellar biosynthesis protein FliR [Dechloromonas aromatica RCB] gi|71846021|gb|AAZ45517.1| Flagellar biosynthesis protein FliR [Dechloromonas aromatica RCB] Length = 260 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 98/241 (40%), Gaps = 2/241 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + +++ + R+ I P S + IP + RL A++ ++ + P L +Q Sbjct: 10 DAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPPMPGVQPGSL 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + ++ ++ +G G ++ G IS +GL T +S + Sbjct: 70 PGLW--ILAQQMLIGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNSSQTPVIT 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 I +I LL ++ H L +S+ IP+ + + + + F L L Sbjct: 128 EFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATPLGASSWLNLAELGSKIFSAGLLL 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P + ++ N+++ +L + PQ+ ++ + P + G + L +S+ + F + Sbjct: 188 SLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASPLQGIFEF 247 Query: 246 G 246 G Sbjct: 248 G 248 >gi|152987229|ref|YP_001349233.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PA7] gi|150962387|gb|ABR84412.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa PA7] Length = 258 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 107/234 (45%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + S L + RV + +M +P + +P++VRL A+ +VL+P L + + Sbjct: 11 GWIASFVLPLFRVAALLMTMPVIGTQLVPVRVRLYLALGICVVLVPNLPPMPQVDALSVK 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G + G +++ G +IS +GL + + ++ ++ L Sbjct: 71 SML--LIGEQILVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANGVSVPVLGQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ L ++ H VF + +S+ T+P+G+ L GN F L L L+ Sbjct: 129 FFTMLVTLLFLAMNGHLVVFEVIAESFVTLPVGEGL-SGNHFWVIAGKLGWVMGAALLLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V N++ G + + PQ+ I+ I P + LG L + ++ Q+ Sbjct: 188 LPAITALLVVNLAFGAMTRAAPQLNIFSIGFPLTLVLGLGILWIGTADLLGQYQ 241 >gi|254251036|ref|ZP_04944354.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa AUO158] gi|124893645|gb|EAY67525.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa AUO158] Length = 260 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 108/241 (44%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + + +P + ++ A ++++ P L + F Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHASVPARAKIGVAAFMALIVAPTLGAMPGVTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+++ +G G +++ ++ G I ++GL T S A + Sbjct: 71 GIW--IVVMQFLIGAAMGFTMQIVFAAVEAAGDYIGLSMGLGFATFFDPHSSGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA +D H QVF AL S+ T+P+ L + + T F + L L+ Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALAASFQTLPVSAALLHAPGWRTLAAFGATVFEMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ I P + +G L + L + +V SH F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMVPNLVPFVSHLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|89895722|ref|YP_519209.1| hypothetical protein DSY2976 [Desulfitobacterium hafniense Y51] gi|219670146|ref|YP_002460581.1| flagellar biosynthetic protein FliR [Desulfitobacterium hafniense DCB-2] gi|89335170|dbj|BAE84765.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540406|gb|ACL22145.1| flagellar biosynthetic protein FliR [Desulfitobacterium hafniense DCB-2] Length = 260 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 2/238 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + LI+ R IML P +P V+L A++ SI+L P + Q Sbjct: 11 LTLFLLILSRWAGMIMLAPVFGARGVPAMVKLGLAVSISIILYPLIMAAGP-QIPSETLP 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y+ L++ E+ +G V G +I T L+ G +I +G N+ ++ + + + Sbjct: 70 YAALLIKEIVVGLVIGFVIYAITAVLEGAGQLIDMQMGFNMSGAIDPIFGVQSAMMGNFQ 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ ++ L + HH + A+VKSY +PI + ++ +++ F + ++L+ P Sbjct: 130 MILAIMLLLATNSHHYLIAAMVKSYTYVPINPGALPQG-LNYYIFLIREIFTLSVQLALP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ +I +GLL + VPQ+ I+ + P I G L L I + F Sbjct: 189 VIGALVLTDIGVGLLMRTVPQMNIFTVIFPVKIIFGFTILFLGIGFFGETVNMLFERA 246 >gi|167736441|ref|ZP_02409215.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 14] Length = 263 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 1/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VN 65 + + R+ + + + P P++V++ A ++V+ P L + V Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPPMPVATVF 70 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A +++ + +G G +++ ++ G +I ++GL T S A + Sbjct: 71 SAQGVWIIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + +LA D H QVF ALV S+ +P+ +L + + V F + L L Sbjct: 131 RFLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLL 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F Sbjct: 191 ALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDT 250 Query: 246 G 246 G Sbjct: 251 G 251 >gi|107100882|ref|ZP_01364800.1| hypothetical protein PaerPA_01001912 [Pseudomonas aeruginosa PACS2] gi|116049393|ref|YP_791804.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa UCBPP-PA14] gi|218892679|ref|YP_002441548.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa LESB58] gi|254234547|ref|ZP_04927870.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa C3719] gi|254239798|ref|ZP_04933120.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 2192] gi|296390185|ref|ZP_06879660.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PAb1] gi|313106447|ref|ZP_07792678.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 39016] gi|115584614|gb|ABJ10629.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa UCBPP-PA14] gi|126166478|gb|EAZ51989.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa C3719] gi|126193176|gb|EAZ57239.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 2192] gi|218772907|emb|CAW28719.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa LESB58] gi|310879180|gb|EFQ37774.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 39016] Length = 258 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 108/234 (46%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + S L + RV + +M +P + +P++VRL A+ +VL+P L + + Sbjct: 11 GWIASFVLPLFRVAALLMTMPVIGTQLVPVRVRLYLALGVCVVLVPNLPPMPQVDALSMK 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L+ ++ +G + G +++ G +IS +GL + + ++ ++ L Sbjct: 71 AML--LIGEQILVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANGVSVPVLGQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ L ++ H VF + +S+ T+P+G+ L GN F L L L+ Sbjct: 129 FFTMLVTLLFLAMNGHLVVFEVIAESFVTLPVGEGL-SGNHFWIIAGKLGWVMGAALLLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V N++ G + + PQ+ I+ I P + LG + L + ++ Q+ Sbjct: 188 LPAITALLVVNLAFGAMTRAAPQLNIFSIGFPLTLVLGLVILWIGTADLLSQYQ 241 >gi|238927447|ref|ZP_04659207.1| flagellar biosynthesis protein FliR [Selenomonas flueggei ATCC 43531] gi|238884729|gb|EEQ48367.1| flagellar biosynthesis protein FliR [Selenomonas flueggei ATCC 43531] Length = 260 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 103/242 (42%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + L++ R ++ P IP+ R+ A++ ++VL P + N Sbjct: 8 QGHIAVFLLMLVRTSGIFLISPFFGSMNIPIFFRVGTALSMTVVLFPVVDGLGTPYVPEN 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ + ELF+G + G + + + G V+ +G + + + + Sbjct: 68 LIMFALTAVGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQIPLIG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 S + + + L + HH + ALV+S+ +PI ++ N T F+ +++ Sbjct: 128 SFLYNLAAIILLATNGHHMILAALVESFRAVPIAGMEGNVSLALLIANFTGTIFLTGMKI 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F ++ N+ +G+L++ +PQ+ I+ + P + +G L + I V F Sbjct: 188 AMPITFAILLTNVGLGILSRTMPQMNIFVVGIPLQLMIGITVLSMIIPFYVLFLDVLFNE 247 Query: 246 GF 247 + Sbjct: 248 MY 249 >gi|253681513|ref|ZP_04862310.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum D str. 1873] gi|253561225|gb|EES90677.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum D str. 1873] Length = 610 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 107/235 (45%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +FLI R+ S + ++P P V++ F + S +++P + D ++ N Sbjct: 7 FLGIFLISLRMFSFVEVVPIFFPKGTPNVVKIMFTVILSFMIIPGI-DYSNISNINGNLQ 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++E+ G G + + +++ G+ + +G + T + + T + L+ Sbjct: 66 LIMYCLIEITTGLTFGFITNICFSCIRYAGAFMDLQVGFAMITMFDPNSNSNVTLIERLL 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L+ ++D + ++S+ I IG+ + N +N+ F + +R++ P Sbjct: 126 YWFSLIVFIIVDGPRMIIKIFIESFNVIHIGKFILNQNSAMHVINVFVKYFQLGIRIAIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + I+ ++++GL+ K VPQ+ I + P I LG + LS+ +I SF Sbjct: 186 IVLIIILTDLTMGLVAKTVPQLNIMILGMPVKIILGLSVIALSLPVIFNIIISSF 240 >gi|319409206|emb|CBI82850.1| Flagellar biosynthetic protein fliR [Bartonella schoenbuchensis R1] Length = 261 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 131/245 (53%), Gaps = 1/245 (0%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DL 60 ++ + +++ L+ RVG+C+ML+PG+S IPM RL A+AFS V+LP + D +L Sbjct: 11 SLPIDQLVIIAMLVFARVGACLMLMPGISSLRIPMNFRLFLAIAFSFVMLPLVVDFFKEL 70 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + A ++ + E+ +G G++ VY LQF ++I+ ++G + Q + DS+ Sbjct: 71 GDKPDIAVLTRALFSEMLIGASLGVIAHVYLWALQFMATIIAMSMGYSGQPGHSVIDSMP 130 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ET + L + ++ + D H L+ SY + N + ++L F+ Sbjct: 131 ETQIAHLFVLAAVMLFFASDLHMVTIRGLLASYDVVSPSFVPNPEAALIDYRDVLSRAFL 190 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L +++PF+ + I+ NI IGL+NKL P IP+YFIS P+++ G L I +++ FS Sbjct: 191 TTLSIAAPFITYAILINIGIGLVNKLTPTIPVYFISLPFVVAGGVFLLYFLIPELLHFFS 250 Query: 241 HSFLY 245 Sbjct: 251 LELQD 255 >gi|295399826|ref|ZP_06809807.1| flagellar biosynthetic protein FliR [Geobacillus thermoglucosidasius C56-YS93] gi|312111662|ref|YP_003989978.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y4.1MC1] gi|294978229|gb|EFG53826.1| flagellar biosynthetic protein FliR [Geobacillus thermoglucosidasius C56-YS93] gi|311216763|gb|ADP75367.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y4.1MC1] Length = 257 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 95/238 (39%), Gaps = 6/238 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI RV S LP S IPM ++ + S ++ I Y Sbjct: 11 FLLIFARVASFFATLPLFSYRTIPMAHKIGLSFFLSWMMF----FAISKPTVALDEMYVL 66 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E+ +G GL + +Q G +I +G + + + + Sbjct: 67 LVVKEVLVGLCIGLFAFMIISAIQIVGGLIDFQMGFAIANVIDPQTGAQNPLMGQYFYMF 126 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFMIMLRLSSPF 189 LL L ++ HH + + SY IP+ + G++ V F I ++S P Sbjct: 127 ALLLLLSVNGHHLLLDGVFYSYRFIPLDHWPRLDHGHVAEYIVKSFSAMFAIAFQMSVPL 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++++G++ + VPQ+ I+ + P I +G + L +++ I H F F Sbjct: 187 VGCLFLVDVALGIVARTVPQLNIFVVGFPVKIAVGFILLIVTMAAIFLAVRHLFDTMF 244 >gi|294140215|ref|YP_003556193.1| flagellar biosynthetic protein FliR [Shewanella violacea DSS12] gi|293326684|dbj|BAJ01415.1| flagellar biosynthetic protein FliR [Shewanella violacea DSS12] Length = 265 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + RV S M++ + P++VR +MA + ++P L +++ F A Sbjct: 11 TIASYMWPLFRVSSMFMVMAVFGANTTPVRVRALLSMAITFAIVPVLPPVENVELFAASA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L +L +G G + + TG +I L + + S + +L Sbjct: 71 MFITL--QQLLIGIAMGFVTLLVMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + +D H + LV S+ TIPI + + + F L +S Sbjct: 129 FLLLTTMIFLAVDGHLVMIRMLVMSFETIPISDQGLSITSYRMLADWGGYMFGAALTMSI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F+ + Sbjct: 189 TPIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLVILWLTLTPIMEHFNEVWTSA 247 >gi|50120647|ref|YP_049814.1| flagellar biosynthesis protein FliR [Pectobacterium atrosepticum SCRI1043] gi|49611173|emb|CAG74619.1| flagellar biosynthetic protein [Pectobacterium atrosepticum SCRI1043] Length = 261 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 101/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F R+ + I P + I ++++ + ++++ P+L V Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRIKIGLGVLITLLVAPYLPLNTTPIFSVAGV 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G GL +++ ++ G +I +GL T + + Sbjct: 72 W---LLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVIARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ +L D H + L S+ T+PI + F + F+ L L+ Sbjct: 129 LNILAILLFLTFDGHLWLISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ I+ + P + +G + L L + +I H F F Sbjct: 189 PIITLLLTINLALGMLNRMAPQLSIFVVGFPITLTVGIMTLGLLLPLIPPFAEHLFSEVF 248 >gi|227112529|ref|ZP_03826185.1| flagellar biosynthesis protein FliR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 261 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F R+ + I P + I +V++ ++++ P+L V Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGALITLLVAPYLPLNTTPIFSVAGV 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G GL +++ ++ G +I +GL T + + Sbjct: 72 W---LLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ +L D H + L S+ T+PI + F + F+ L L+ Sbjct: 129 LNILAILLFLTFDGHLWMISLLADSFYTLPISANPINSHAFLALARAGGLIFINGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ ++ + P + +G + L L + ++ H F F Sbjct: 189 PIITLLLTINLALGMLNRVAPQLSVFVVGFPITLTVGIMTLGLLLPLVPPFAEHLFSEVF 248 >gi|319898617|ref|YP_004158710.1| flagellar biosynthetic protein FliR [Bartonella clarridgeiae 73] gi|319402581|emb|CBI76126.1| Flagellar biosynthetic protein FliR [Bartonella clarridgeiae 73] Length = 259 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 126/239 (52%), Gaps = 1/239 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFV 64 E + LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + D + + Sbjct: 13 EQSVTIALLIFSRVGTCLMLMPGISSVRIPMSLRLFIGISFSLAILPMVTDFFKVFSDKS 72 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + A + + E+ +G G++ Y LQF S+I +IG + Q I DS E+ + Sbjct: 73 DLALLIRALFAEMLIGATFGVIAHAYLWALQFMSSIIGMSIGFSGQPGHSIIDSTPESHV 132 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ ++ + D H L+ SY +P+ N + + L F+ L Sbjct: 133 ANILVFAAIMLFFASDLHIITIRGLLASYDIVPLAFIPNPEAALTDYREALSRAFLTTLS 192 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++PF+ + I+ NI+IGLLNKL P IP+YFIS P+++ G L + + +++ F+ Sbjct: 193 IAAPFIIYAILINIAIGLLNKLTPTIPVYFISLPFVMCGGLFLLYILMPELLHLFNSEL 251 >gi|170748117|ref|YP_001754377.1| flagellar biosynthesis protein FliR [Methylobacterium radiotolerans JCM 2831] gi|170654639|gb|ACB23694.1| putative flagellar biosynthetic protein [Methylobacterium radiotolerans JCM 2831] Length = 248 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 1/233 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN-FVNR 66 ++ +F+I CRVG C+++ PGLS + + ++RL A+ ++ + P L Sbjct: 5 TILGVFVIFCRVGGCLLVAPGLSSARVAPRIRLLVALTVTLAVAPLLLPRFGAGLRDAAP 64 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + E G G R + L+ S ++T IGL ++D+ A + S Sbjct: 65 VDILWWIGCETLTGLAIGFFGRSFYFALETLASGVATMIGLGGIPGNPVADTEAASLAGS 124 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 LI + + ++ +D H ++F L+ SY IP G + + V+ F + LR++ Sbjct: 125 LIVMAATILVFALDLHWELFRGLIASYDRIPPGHPFGSRLMLAGLVDRTGAAFAMALRVT 184 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 SPF+ + ++ N+++GL NKL PQIP++FI+TP+++ G L ++ QF Sbjct: 185 SPFIIYSVIVNLALGLANKLTPQIPVFFIATPFILFGGLAILLFLSNDLLGQF 237 >gi|115523201|ref|YP_780112.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisA53] gi|115517148|gb|ABJ05132.1| type III secretion system inner membrane R protein [Rhodopseudomonas palustris BisA53] Length = 248 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 134/244 (54%), Gaps = 3/244 (1%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59 M + ++++FLI CRVG+C+M+ PG S S IPMQVRL A+ +++L P L T+ Sbjct: 1 MIDATSTSVLAVFLIFCRVGTCMMVAPGYSRSNIPMQVRLFLAINVTLMLSPLLVATVRP 60 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 L ++ EL +G V GL RV+ L+ ++I++AIGLNL + D+ Sbjct: 61 LVEGAAAPAIIAIIWSELVVGLVIGLTARVFFAALETMATMIASAIGLNLAGTT--EDTE 118 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 L LI + + ++ D H ++ L+ SY ++ N + V L F Sbjct: 119 HVPALVPLITLTATVLFFITDQHWELLRGLISSYRVWVPAVGISGENGLAQLVEHLSQAF 178 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + LR++SPF+ + I+ N++IGL NKL P IP+YFIS P+++ G L L L+ V QF Sbjct: 179 TLALRIASPFVVYSIIVNLAIGLANKLTPSIPVYFISLPFVLFGGLLLLYLTSREAVLQF 238 Query: 240 SHSF 243 S +F Sbjct: 239 SIAF 242 >gi|74055046|gb|AAZ95851.1| FliR [Aeromonas hydrophila] Length = 274 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 94/238 (39%), Gaps = 2/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S+ + RV +M++ P ++R+ A+A + ++ P L ++ F + Sbjct: 20 WLSSILWPLARVSGLLMVMAVFGSRLTPARIRIGLALALTFMIAPLLPPMPKIELFSIGS 79 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + +L +G GL+ + G VI+ L T + + + + Sbjct: 80 FLV--LAQQLLIGIALGLMTQFLMESFVMAGQVIAMQTSLGFATLVDPMNGQSAPVVGQF 137 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + +V S+ ++P+ S V L + L ++ Sbjct: 138 YLMLATLVFLAVDGHLIMLRMVVLSFDSLPVSDAGLTLPAIRSLVGFLGVMYQASLVMAL 197 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + ++ N + G++ + PQ+ I+ I + G L L L+I + F + Sbjct: 198 SAIIALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLLILWLTIGGFLGHFDSMWER 255 >gi|83309717|ref|YP_419981.1| flagellar biosynthesis protein FliR [Magnetospirillum magneticum AMB-1] gi|82944558|dbj|BAE49422.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1] Length = 254 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 ++ + FL+ R+G+ +ML PGL S + ++RL A++ + V+LP + + + Sbjct: 7 QLDIFRFFLVFTRIGAALMLFPGLGGSLVSTRIRLLLALSVAFVMLPVVGASFPAVP-RS 65 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 V E +G G +I L GS+I GL S L Sbjct: 66 VGGMLLAVFGEAVVGVYLGTVIMFIMSTLNMAGSMIGYQTGLTNAFSFDPIAQQQSQLLT 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + IGL+A++ D HH +F A+ +SY P GQ L FG+ + ++ TF + + Sbjct: 126 GFLANIGLVAVFATDMHHLMFQAVFESYYLFPPGQPLQFGDYAETLGHLATDTFKVGTQF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++P + F +VF +GLL++LVPQ+ ++F+ P + +G +++ +++ F F Sbjct: 186 AAPLVVFGLVFYTGLGLLSRLVPQLQVFFVGMPVQVMVGMWLFMVTMPLVISLFLRFFES 245 Query: 246 GF 247 G Sbjct: 246 GL 247 >gi|254418936|ref|ZP_05032660.1| flagellar biosynthetic protein FliR [Brevundimonas sp. BAL3] gi|196185113|gb|EDX80089.1| flagellar biosynthetic protein FliR [Brevundimonas sp. BAL3] Length = 261 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI R+G+ +ML+PG +Y+P ++RL A+ S+ L P + D++ + V Sbjct: 15 LIFARIGAILMLIPGFGETYVPPRIRLSLALLISLALWPVVRDSLPGLPET-LGGMAGWV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G+L+R++ L G ++S L+ + + + + S + + G+ Sbjct: 74 IREVVVGLMIGMLLRMFLTSLMTAGEIVSLQTTLSFAQTANPLQAQPGSTVGSFLLLFGV 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 ++ D HH +V SY I + L G+ V L +F++ ++L++P L F Sbjct: 134 TLIFATDTHHLFIAGMVGSYSLIAPAKPLIMGDFTEMAVRTLGDSFLLGVQLAAPVLVFA 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++FN++ GL+ +++P +YF + P + LG LS+ + F + Sbjct: 194 LIFNLASGLIARVMPSFQVYFAAAPLSVILGLSIFALSLGALGTVFIDRY 243 >gi|242280057|ref|YP_002992186.1| flagellar biosynthetic protein FliR [Desulfovibrio salexigens DSM 2638] gi|242122951|gb|ACS80647.1| flagellar biosynthetic protein FliR [Desulfovibrio salexigens DSM 2638] Length = 267 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 105/233 (45%), Gaps = 1/233 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +MS +L + RV + LLP + IP V+ + ++ + P + L + Sbjct: 11 LMSFYLTLFRVSIVLFLLPFFGGNSIPKTVKAALTIVLTLGIWPHVTFEGSLMP-ASPYN 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + +++ E+ LG V G+ + V +Q G++I +G ++ + E + Sbjct: 70 IALMILGEMVLGLVMGISVHVMFAAIQTGGNLIGVQMGFSMVNVLDPLTGTNEAVTAHFL 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L I+ H + A+V+S+ IP GQ + S +++ + F++ ++++SP Sbjct: 130 YMCAILVFLSINGHLYLMSAMVESFKYIPPGQIFISSTLTSQIMSISKDLFVLAVKVASP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + V ++ + L++K+ PQ+ + + P I G L L ++ Sbjct: 190 IIATIFVVDLGLALISKMAPQMNVLMLGFPLKILAGFFVLSLVFTVLSLHVGE 242 >gi|317048611|ref|YP_004116259.1| flagellar biosynthetic protein FliR [Pantoea sp. At-9b] gi|316950228|gb|ADU69703.1| flagellar biosynthetic protein FliR [Pantoea sp. At-9b] Length = 262 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 108/240 (45%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + P LS IP +V++ A+ + +L+P L ++ + A Sbjct: 12 WVSQFFWPMVRLLALFASAPVLSEKSIPNRVKIGLAVLTTWILMPLL---PPVETTLFTA 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G GL ++ ++ G VI +GL+ T L L + Sbjct: 69 AGFWLLLQQILIGVGLGLTMQFAFGAVRMAGEVIGLQMGLSFATFFDPGSRLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV S+ T+PI N F + V F+ + L+ Sbjct: 129 LDMLAMLLFLTFNGHLWLISMLVDSFHTMPISDHPLNANAFMALVKAAGLIFLNGMMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ + P + +G L L L + ++ H F F Sbjct: 189 PLIVLLLTLNMALGLLNRVTPQLSVFVVGFPITLTVGILSLGLMMPLLAPFCEHLFSEVF 248 >gi|146296298|ref|YP_001180069.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409874|gb|ABP66878.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 260 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + P IP ++ A SI++ L + N + Sbjct: 15 FFLVLARMSGIFIASPIFGRRNIPAYFKIGLAFFLSIIV--VLLYHFEYTVPQNLLEFIF 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V E +G + G + + + G +I AIG + + + L + + + Sbjct: 73 VVTKEFIVGIIIGFISYMIFSTILLAGQIIDNAIGFGIANVIDPMSEIQVPLLGNFLYLY 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ + D HH + A+V SY +P+G + F+ F+I + +S P L Sbjct: 133 MLVIFFATDAHHTLIRAVVYSYKVVPLGYSNILPKLSQKFITFFIELFVIGIEISLPILM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ +I +G+L++ VPQ+ ++ + P I +G + L + + I+ Sbjct: 193 SMLIVDIILGILSRAVPQMNVFMVGIPIKIAIGFVVLVIVLPIM 236 >gi|94968668|ref|YP_590716.1| flagellar biosynthetic protein FliR [Candidatus Koribacter versatilis Ellin345] gi|94550718|gb|ABF40642.1| flagellar biosynthetic protein FliR [Candidatus Koribacter versatilis Ellin345] Length = 253 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 4/242 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E+ + S+ L+ R+ + ++ P S + IP +V+ + +I+L P + ++ Sbjct: 5 EVWVQSIVLVGTRIAALVLFAPFFSHAAIPPRVKGGLVVLLTILLYPSVIS----ATVLS 60 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + +V+ E F+G + GL + +QF G + +GL+L + + L+ Sbjct: 61 ASEVVGVVLHETFIGMLIGLSSVLVFEAVQFAGQCLGIEVGLSLVSVLDPQTQADSPVLS 120 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ I LL ++ HH + AL SY IP G G + F + +++ Sbjct: 121 VLLQTILLLLFLDLNVHHWLLRALADSYRLIPPGAGRLTGVVVQDLFQQAGMIFALGVQI 180 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++P L ++ +I L K PQ+P+ + P LG L + F +F Sbjct: 181 AAPVLAATLLADIVFAFLAKASPQMPVLLLGMPVKFVLGLTTLWAGLRFWPVIFDRNFAL 240 Query: 246 GF 247 Sbjct: 241 AL 242 >gi|269103166|ref|ZP_06155863.1| flagellar biosynthesis protein FliR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163064|gb|EEZ41560.1| flagellar biosynthesis protein FliR [Photobacterium damselae subsp. damselae CIP 102761] Length = 260 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 99/240 (41%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + R+ S +M + ++ ++RL A+ + ++P L ++ Sbjct: 11 WLANYMWAFIRISSMMMTMTFFGARFVSAKIRLYLALTITFAVVPVLPQVPQDIALLSLH 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G GL+ + T G +++ L + + ++ L L Sbjct: 71 GFI-ITTQQIVIGAAIGLVTQFITQSFVLLGQILAMQSSLGFASMVDPANGQNTPVLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + D H ++ +VKS+ T+PIG+ + G + F + L ++ Sbjct: 130 YLFLAIILFLMTDGHLEMLELIVKSFTTLPIGKAMFNGQDYYQLALWFGHMFKMALSMAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N+S G++ + PQ+ I+ + + + +G + + ++ + + +G Sbjct: 190 AGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLIGFVISWFVVRGLLPHYEQYWQFGL 249 >gi|332524234|ref|ZP_08400460.1| flagellar biosynthetic protein FliR [Rubrivivax benzoatilyticus JA2] gi|332107569|gb|EGJ08793.1| flagellar biosynthetic protein FliR [Rubrivivax benzoatilyticus JA2] Length = 253 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 2/234 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L R + +P L +P +VR+ A + P L + + Sbjct: 11 GWITPLIWPFLRALALFTAMPVLGTRSVPTRVRIGLAGLIAFAAQPSLPAVEPVPLDSPQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A+ LV+ ++ +G G +R+ ++F G ++ +GLN T + Sbjct: 71 AF--VLVVQQVVIGLSLGFAVRIVFAAVEFAGEIVGLQMGLNFAAFFDPIRGGTATATSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G VI+ H V ALV+S+ P+G E + F + ++ Sbjct: 129 FYGTTIAWLFIVINGHLLVIAALVQSFTAFPVGPEPFGFLKEARPHLWAAEIFSTGVWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P L + NI +G ++++ PQ+ ++ + P +G+G + + L++ + F+ Sbjct: 189 LPLLAMLLFVNIVLGAVSRVAPQMNVFSVGFPITLGVGLVGILLTLPAMQGPFT 242 >gi|193071154|ref|ZP_03052078.1| flagellar biosynthetic protein FliR [Escherichia coli E110019] gi|192955549|gb|EDV86028.1| flagellar biosynthetic protein FliR [Escherichia coli E110019] Length = 261 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FTLWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTQNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|217976248|ref|YP_002360395.1| type III secretion system inner membrane R protein [Methylocella silvestris BL2] gi|217501624|gb|ACK49033.1| type III secretion system inner membrane R protein [Methylocella silvestris BL2] Length = 249 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 125/236 (52%), Gaps = 1/236 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-NFVNRA 67 +++ F++ CR+G+C+M++PG+S + IP++VRL A ++ L P L D + + + + Sbjct: 7 VLTAFVLFCRIGACLMIMPGISSARIPVRVRLFVGFAITLGLTPILSDEVGPKISAESPF 66 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ E +G + G L R++ L + I+ AIGL+ + D+ + SL Sbjct: 67 ILVQTILSESLIGGLIGFLGRIFFGALDALANAIAMAIGLSSPLAPPTDDNEPAPAIVSL 126 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + L+ ++ + H +V L+ SY P+ N L +F + LR+SS Sbjct: 127 ISLGALVLFFLTNLHWEVLRGLLASYSVWPVSGLFEARLGLVEIGNSLARSFALALRVSS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 PF+ + ++ N++IG+ ++ PQIPIYFI+ P + G L ++ ++ F F Sbjct: 187 PFIVYALIVNLAIGIASRFAPQIPIYFITVPAVAAGGLFLLYITCRSLLELFVAGF 242 >gi|15596645|ref|NP_250139.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PAO1] gi|9947399|gb|AAG04837.1|AE004574_8 flagellar biosynthetic protein FliR [Pseudomonas aeruginosa PAO1] Length = 258 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 108/234 (46%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + S L + RV + +M +P + +P++VRL A+ +VL+P L + + Sbjct: 11 GWIASFVLPLFRVAALLMTMPVIGTQLVPVRVRLYLALGVCVVLVPNLPSMPQVDALSMK 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L+ ++ +G + G +++ G +IS +GL + + ++ ++ L Sbjct: 71 AML--LIGEQILVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANGVSVPVLGQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ L ++ H VF + +S+ T+P+G+ L GN F L L L+ Sbjct: 129 FFTMLVTLLFLAMNGHLVVFEVIAESFVTLPVGEGL-SGNHFWIIAGKLGWVMGAALLLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V N++ G + + PQ+ I+ I P + LG + L + ++ Q+ Sbjct: 188 LPAITALLVVNLAFGAMTRAAPQLNIFSIGFPLTLVLGLVILWIGTADLLSQYQ 241 >gi|296157444|ref|ZP_06840279.1| flagellar biosynthetic protein FliR [Burkholderia sp. Ch1-1] gi|295892216|gb|EFG71999.1| flagellar biosynthetic protein FliR [Burkholderia sp. Ch1-1] Length = 260 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 108/240 (45%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P L +P++V++ A +I++ P L + F Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQVTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G+ +++ + TG + +GL T S + L+S Sbjct: 71 GVW--IIVNQFLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDSQASSSSQVLSS 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +L VID H Q+ AL+ ++ ++P+ + + + N T F L LS Sbjct: 129 YMNTIAMLVFLVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGSTVFSAGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P + +G L L L ++ F F G Sbjct: 189 LPVVVALLITNLALGILNRAAPQIGVFQIGFPLTMLIGMLLLQLMTPNMIPFFMRLFDVG 248 >gi|169827138|ref|YP_001697296.1| flagellar biosynthesis protein FliR [Lysinibacillus sphaericus C3-41] gi|168991626|gb|ACA39166.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41] Length = 257 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 6/236 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L++ RV + + +P S IP QV++ A+ + ++ TID++ F Sbjct: 8 LTVFLLVLVRVSAFFVTVPFFSYRTIPPQVKITLALVLAWMMY----YTIDVEPFAFNDD 63 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y LVM E +G + GL+ + +Q GS I +G + + + Sbjct: 64 YILLVMKEALVGLLLGLVGYIIMSAIQIAGSFIDFQMGFAIANIIDPQTGAQSPLIGQFF 123 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLS 186 ++ L L I+ HH + + SY +P+ Q +F N + F I +++ Sbjct: 124 NMLAFLLLLAINGHHMILDGIYYSYQFLPMDQFPSFTNDSFPQFIITTFTAVFAIAFQMA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +P + + ++++G+ K VPQ+ I+ + P IG+ L L + +++ Sbjct: 184 APVVATLFLVDLALGITAKTVPQLNIFVVGFPIKIGVSFLVLFTMMAVMIQVIQKL 239 >gi|197104397|ref|YP_002129774.1| flagellar biosynthesis protein FliR [Phenylobacterium zucineum HLK1] gi|196477817|gb|ACG77345.1| flagellar biosynthesis protein FliR [Phenylobacterium zucineum HLK1] Length = 253 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 127/235 (54%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + L+ R+G+ IML+PGL ++IP ++RL FA+A +++L P L T A Sbjct: 10 VFAAGLVFARLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAPPIPASAGA- 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + V+ EL +G + G ++R++ L L G ++S L+ + + L++ + Sbjct: 69 LAGEVIRELLIGLMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTFL 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 G++G++ + D HH ALV+SY P G+E+ G+ + F + L+L++P Sbjct: 129 GMLGIVLILTTDLHHMFLAALVRSYAIFPFGREVPVGDAGQLAIQTTSRAFALGLQLAAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ N+++GL+ +++P ++FI++P L+ LG +S+ +I + + Sbjct: 189 VVVLSLIVNVAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVIGMVWVDRY 243 >gi|315127307|ref|YP_004069310.1| flagellar biosynthesis protein FliR [Pseudoalteromonas sp. SM9913] gi|315015821|gb|ADT69159.1| flagellar biosynthesis protein FliR [Pseudoalteromonas sp. SM9913] Length = 259 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 100/237 (42%), Gaps = 2/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L + R+ S IM++ G+ +P ++++ A+ + +++P L F Sbjct: 11 WLSDFLLPLVRISSMIMIMAGIGAKNVPARIKMGLAVVVTFLVVPVLPAATFTNLFS--F 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V+ ++ +G G + G +++ GL + + S+ ++ + Sbjct: 69 EMILVVLQQMLIGVAIGFASTLLLNTFVLAGQILAMQTGLGFASVVDPSNGMSVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L +V + H + +V S+ +PI + + V F L LS Sbjct: 129 YLILATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWAVDHYWDIVTWGGWMFTTALVLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L +V N++ G++ + PQ+ I+ I P+ + G + + ++ V QF +L Sbjct: 189 APLTAMLVINMAFGIMTRAAPQLNIFSIGFPFTLVAGLVIIWATLGNFVTQFEFQWL 245 >gi|27381961|ref|NP_773490.1| flagellar biosynthesis protein FliR [Bradyrhizobium japonicum USDA 110] gi|27355131|dbj|BAC52115.1| fliR [Bradyrhizobium japonicum USDA 110] Length = 250 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 127/241 (52%), Gaps = 1/241 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59 M S ++ F++ CR+G+C+M +PG S +P QVRL A+ + L P L + Sbjct: 1 MISSLADSVLVTFIVFCRIGACLMFVPGYSSVNVPAQVRLFIALVTTFALTPILIAVLKP 60 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 L + + L+ E+ +G V GL RV+ L LQ +V+++AIGL+ I D+ Sbjct: 61 LTDQAAPLTLALLIGSEVLVGSVIGLGGRVFFLALQTMATVMASAIGLSNIPGTPIGDTD 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 L LI ++ D H QV L+ SY G L V+ L F Sbjct: 121 PAPALVPLIMASVTTLFFMTDQHWQVLRGLMNSYDVWHPGARLGGSMALDQLVSRLSEAF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ LR++SPF+ + ++ N+++GL+NKL P IP+YFIS P+++ G L L L+ + ++ QF Sbjct: 181 VLTLRIASPFIVYSVIVNLAVGLINKLTPAIPVYFISVPFVLFGGFLLLYLTSDELLTQF 240 Query: 240 S 240 Sbjct: 241 M 241 >gi|91785624|ref|YP_560830.1| flagellar biosynthesis protein FliR [Burkholderia xenovorans LB400] gi|91689578|gb|ABE32778.1| Flagellar biosynthesis protein FliR [Burkholderia xenovorans LB400] Length = 260 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P L +P++V++ A +I++ P L F Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQFTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G+ +++ + TG + +GL T S + L+S Sbjct: 71 GVW--IIVNQFLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDSQASSSSQVLSS 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +L VID H Q+ AL+ ++ ++P+ + + + N T F L LS Sbjct: 129 YMNTIAMLVFLVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGGTVFSAGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P I +G L L L ++ F F G Sbjct: 189 LPVVVALLITNLALGILNRAAPQIGVFQIGFPLTILIGMLLLQLMTPNMIPFFMRLFDVG 248 >gi|5921666|gb|AAD01928.2| FliR [Pseudomonas putida] Length = 258 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 109/233 (46%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV + +M++P L +P +VRL A+A ++V++P L + + Sbjct: 12 WVATFMLPLFRVVAMMMVMPILGTRMLPSRVRLYAAVAITVVIVPGLPPLPEFDPLSVQG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ +G + GL +++ G +++ +G+ + + ++ + ++ Sbjct: 72 LL--LCAEQIIVGTLFGLSLQLLFQVFVLAGQIVAIQMGMAFASMVDPANGVNVAVISQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + +++ H +F L +S+ T+P+G L N F L F L L Sbjct: 130 MSMLVSVLFLLMNGHLVMFEVLTESFTTLPVGNALMI-NHFWEIAGRLSWVFGAGLLLIL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V N++ G++ + PQ+ I+ I P + +G L + + I+ + Sbjct: 189 PAIAALLVVNVAFGVMTRAAPQLNIFSIGFPLTLVMGMLIFWIGLADILSHYQ 241 >gi|149182521|ref|ZP_01860994.1| flagellar biosynthesis protein R [Bacillus sp. SG-1] gi|148849781|gb|EDL63958.1| flagellar biosynthesis protein R [Bacillus sp. SG-1] Length = 258 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 7/240 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ RV + + LP S IP Q R+ FA + ++ TID A Y Sbjct: 11 FLLVFMRVSAFFVTLPLFSYRSIPAQHRVGFAGVIAWIMY----YTIDASPMPIDAAYIL 66 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L+M E +G + G + +Q GS I +G + + + + Sbjct: 67 LIMKEAMIGLLIGFTAYMIISAIQVAGSFIDFQMGFAIANVIDPQTGAQSPLVGQYLYTF 126 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 LL L +D HH + + SY IP+ Q N+ V + F+I ++S P Sbjct: 127 ALLLLLALDGHHLLLDGVFYSYQFIPVDQPWIPFGNENLVEYIVKTFNSVFIIAFQMSIP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + + ++++G++ + VPQ+ ++ + P I + L L + + ++ F + Sbjct: 187 VVATLFLVDVALGIVARTVPQLNVFVVGFPIKIAVSFLVLFIVLGAMMTVMQQMFELMMY 246 >gi|157692317|ref|YP_001486779.1| flagellar biosynthesis protein FliR [Bacillus pumilus SAFR-032] gi|157681075|gb|ABV62219.1| flagellar biosynthesis protein FliR [Bacillus pumilus SAFR-032] Length = 259 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 97/237 (40%), Gaps = 6/237 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P L+ IP R+ F++ +++ + + Y Sbjct: 9 AFLLVFIRITAFFVTVPLLAHRTIPAVHRVGFSLFLAVISFSTIK---EPPALDIDGLYM 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + E +G + GL+ + +Q GS I +G + + + Sbjct: 66 MLAVKEAMVGLLLGLIAYIMVSAVQIAGSFIDFQMGFAIANVIDPQTGAQTPLMGQFFYT 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + LL + + HH + + S+ I + Q + F+I ++S+ Sbjct: 126 VTLLLMLATNAHHLLLDGIYYSFQYIAVDQYALNFGSESFAYFIAKSFNQMFIIAFQISA 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 P + + ++++G++ + VPQ+ ++ + P +G+ + + + + +I ++F Sbjct: 186 PVVASLFLVDLALGIVARTVPQMNVFVVGLPIKMGVSFIMIIICMGVIFGVVQNTFD 242 >gi|254292631|ref|YP_003058654.1| flagellar biosynthetic protein FliR [Hirschia baltica ATCC 49814] gi|254041162|gb|ACT57957.1| flagellar biosynthetic protein FliR [Hirschia baltica ATCC 49814] Length = 247 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ CR+GS +ML PG S +P Q RL A+ ++ L+P L D + + + + L+ Sbjct: 9 LLFCRIGSVLMLAPGWGESSVPAQFRLSAALLATMALVPNLIDQMPPVPEL-VSQSALLI 67 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G R+ LQ G +I + GL + T + + + + + + Sbjct: 68 ISEILIGIMMGAGARILMSALQVGGQIIGISSGLAMATQFDPTIGSSSAIIGVFMSMTAI 127 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + + H + A V SY G+ L G+ + + + F + L++++P L Sbjct: 128 VLIMIAGIHRDMLQAAVDSYQLFKPGEPLPIGDAAQWELGAMSSAFKLGLQIAAPILVVA 187 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +VFN+SIGL+ +L+PQ+ ++FI+ P + LG + + + + + Sbjct: 188 LVFNLSIGLVARLIPQVQVFFIAMPIQVMLGLSIMTFILGGGLLVWLDAL 237 >gi|462612|sp|P34202|FLIR_PECCC RecName: Full=Flagellar biosynthetic protein fliR; AltName: Full=Flagellar biosynthetic protein mopE gi|397347|emb|CAA51478.1| mopE [Pectobacterium carotovorum] Length = 261 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 101/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F R+ + I P + I +V++ + ++++ P+L V Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGVLITLLVAPYLPLNTTPIFSVAGV 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G GL +++ ++ G +I +GL T + + Sbjct: 72 W---LLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ +L D H + L S+ T+PI + F + F+ L L+ Sbjct: 129 LNILAILLFLTFDGHLWMISLLADSFYTLPISANPIISHAFLALARAGGLIFINGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ I+ + P + +G + L L + +I H F F Sbjct: 189 PIITLLLTINLALGMLNRVAPQLSIFVVGFPITLTVGIMTLGLLLPLIPPFAEHLFSEVF 248 >gi|307546960|ref|YP_003899439.1| flagellar biosynthetic protein FliR [Halomonas elongata DSM 2581] gi|307218984|emb|CBV44254.1| K02421 flagellar biosynthetic protein FliR [Halomonas elongata DSM 2581] Length = 266 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ R+ ++ P S +P Q ++ A A ++V+ P L D+ + Sbjct: 11 AWLVAFLWPFARITGLMLSSPLWGHSSVPRQAKIALAGALTVVIAPMLPPMPDVAIVSWQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ +L +G GL++RV +Q TG I +GL T S L+ Sbjct: 71 GL--GILTEQLLIGAAMGLVMRVTLAVVQATGEFIGLQMGLAFATFFDPSSGTNMMVLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ +I LL +D H V L S+ ++PIG F V T F + L+ Sbjct: 129 LLYMITLLMFLALDVHLVVLEVLANSFRSLPIGIGRFDPAAFMMLVRYGATIFTSGMLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+S+G+LN+ PQ+ ++ I P + +G + L + + + F G Sbjct: 189 LPLVASLLIINLSLGILNRAAPQLTVFNIGFPTSLTVGIILLMVLMTDLDRFLERLFGQG 248 >gi|222053618|ref|YP_002535980.1| flagellar biosynthetic protein FliR [Geobacter sp. FRC-32] gi|221562907|gb|ACM18879.1| flagellar biosynthetic protein FliR [Geobacter sp. FRC-32] Length = 260 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 110/232 (47%), Gaps = 1/232 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+V R+ +P +PM++++ M+ +++L P + + + Sbjct: 15 FSLVVGRMAGLFSAIPLFGGKSVPMRIKMAVIMSMALLLFPIIKMQVPPLP-GDSISIGL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G G++ + ++ G ++ +G+++ + ++ GI+ Sbjct: 74 LVIRETLIGLTLGIISQAIFAAVEMCGQIVGMQMGISIAALFDPNTQSNVPTMSLFQGIL 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L + HH A+V+SY IP+G G + F+ + F++ ++L++P + Sbjct: 134 AMLLFVALGVHHIFIRAIVESYQVIPVGAWHMSGELMQFFITSIGAVFILGVKLAAPVMV 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++++G++ + PQ+ I+ +S P IG+G L L LS+ + +SF Sbjct: 194 ALLATSVALGIMARAFPQMNIFMVSMPLNIGIGFLALGLSLLAFLRTLQNSF 245 >gi|83858791|ref|ZP_00952313.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633] gi|83853614|gb|EAP91466.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633] Length = 252 Score = 147 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 120/243 (49%), Gaps = 1/243 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + + + ++ R+G +ML+PG+ + IP+++RL FA+AFS V+ P + ++ Sbjct: 5 FDLSLTIFAAAMVFARMGGILMLMPGIGETSIPVRLRLAFALAFSFVIGPIVAPSLPAPP 64 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 A + V +E +G + G R+ G +I GL + S + A Sbjct: 65 -DTLAGVAITVGLETLIGVMIGAASRILLTAGAIAGQIIGYQTGLAMAQSFDPAQGQAGV 123 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 + +I ++ + V H ++ A SY +P GQ +G+ + + F+I Sbjct: 124 LPAQFLNLIFIVIVLVTPLHQEMLLAAAGSYELMPAGQPPMWGDAAYWALELFIDAFVIG 183 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++++SP + F +VF + +G+L++L+PQ I+FI+ P I +G + +S+ +V ++ Sbjct: 184 VQIASPLIVFGLVFYLGLGVLSRLMPQAQIFFIAMPLNILIGFSIMAMSLGAMVMLWTDR 243 Query: 243 FLY 245 + Sbjct: 244 YER 246 >gi|90406807|ref|ZP_01214999.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] gi|90312044|gb|EAS40137.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] Length = 264 Score = 147 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 98/239 (41%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + CR+ + +M++ + P+++RL +A+A +I +LP L + + Sbjct: 11 LLATYLWSFCRIAAMLMVMVAVGSRTTPVRIRLFYALAITIAVLPVL-PIVQTNIELFSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +++ +L +G G + G +I+ L + + + + Sbjct: 70 GSAFIILQQLLIGIAIGTISVFVVQTFVVAGQIIAMQTSLGFASMADPMNGQSSPVVGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L + +D H + +++S+ T+P+ + F L S Sbjct: 130 YVLLVTLLFFGVDGHLLMIEFIIRSFDTLPVSMHGLLATDYKKLAGWFSVMFSAALAFSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ K PQ+ I+ + + G L +++ + F + +L G Sbjct: 190 ASMVAMLLVNLSFGIMTKAAPQLNIFSLGFSISMVFGLFVLWVTLVNVPAHFENQWLRG 248 >gi|120613019|ref|YP_972697.1| flagellar biosynthetic protein FliR [Acidovorax citrulli AAC00-1] gi|120591483|gb|ABM34923.1| flagellar biosynthetic protein FliR [Acidovorax citrulli AAC00-1] Length = 247 Score = 147 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 100/229 (43%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + M+ P SM IP++ ++ A ++ L D + VN Sbjct: 2 AWLSPVLWPFLRVLAVFMVAPVFSMRSIPVRAKVGLAFLVAVCAQAVLPDQPVVS--VNG 59 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 V ++ +G G +R+ ++ G V+ +GLN + S S + + Sbjct: 60 REALGAVAQQVAVGMSVGFAVRLVFTAVELAGEVVGLQMGLNFASFFDPSTSGQVSAVGR 119 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G + +L VI+ H V A+VKS+ + P+ + + F L ++ Sbjct: 120 FFGHMAMLLFVVINGHLMVLMAVVKSFDSFPVDGNFLQSIGQMRLHELGASLFSSALWIA 179 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++ Sbjct: 180 LPMIALLMFVNLALGVISRVAPQMNIYAVGFPVTLTVGLLGIAATLPML 228 >gi|320354334|ref|YP_004195673.1| flagellar biosynthetic protein FliR [Desulfobulbus propionicus DSM 2032] gi|320122836|gb|ADW18382.1| flagellar biosynthetic protein FliR [Desulfobulbus propionicus DSM 2032] Length = 259 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 109/240 (45%), Gaps = 1/240 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 P L + RV + + +P + S I ++++ A+A S++L P + I F Sbjct: 7 PLQQFQEFLLCLARVLALVAAIPAFAGSAISGRIKIGLAVATSLLLFPAMAPHIPKVAFT 66 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + L++ E+ LG + GL+ ++ + F G+VI +G + + + Sbjct: 67 -LTEFGLLIVNEVLLGVMIGLVTQMVFAAVSFGGTVIGYQMGFAAANIFDPQTTQQLSLM 125 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + I+ LL +D HH F ALV+SY +P G + + F++ ++ Sbjct: 126 SQFANILALLVFLALDMHHFFFRALVESYHLLPPGPLDFSHGAVEELMRLASRMFVLGVK 185 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 S+P L ++ N+ +G+L ++ PQ+ ++ +S P IG+ L + L++ F Sbjct: 186 FSAPVLTLLLLTNLVLGILARVFPQLNVFMLSFPLNIGIAFLVIGLTLGATFSVLRREFD 245 >gi|119469998|ref|ZP_01612803.1| flagellar biosynthesis protein R [Alteromonadales bacterium TW-7] gi|119446708|gb|EAW27981.1| flagellar biosynthesis protein R [Alteromonadales bacterium TW-7] Length = 259 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 2/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L + R+ S IM++ GL +P +++L ++ +++++P L F Sbjct: 11 WLSDFLLPLVRISSMIMIMAGLGAKNVPTRIKLGLSVVVTLLVVPVLPPATFTNLFS--F 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V+ ++ +G G + G +++ GL + + S+ + + Sbjct: 69 EMILVVIQQMLIGIAIGFASTLLLNTFVLAGQILAMQTGLGFASVIDPSNGASVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L +V + H + +V S+ +PI + + V F L LS Sbjct: 129 FLILATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L +V NIS G++ + PQ+ I+ I P+ + G + + ++ + QF +L Sbjct: 189 APLTAMLVINISFGIMTRAAPQLNIFAIGFPFTLVAGLVIIWATLGNFILQFEFQWL 245 >gi|332981451|ref|YP_004462892.1| flagellar biosynthetic protein FliR [Mahella australiensis 50-1 BON] gi|332699129|gb|AEE96070.1| flagellar biosynthetic protein FliR [Mahella australiensis 50-1 BON] Length = 259 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 105/237 (44%), Gaps = 1/237 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ +L P +P +++ + ++VLL + + N Y Sbjct: 12 TFLLVFMRMTGLFVLSPVFGRRNVPAYLKIGMSFMMAMVLLNTI-PLQSIDIVNNIWLYV 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 ++ E+ +G G + + + G ++ IG + + + +A + +LI + Sbjct: 71 WILFKEMLIGLAMGYITTLAFSAILIAGQIMDFQIGFGMVNAFDPVNEVAVPIVGNLINM 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + LL + ++ HH + L SY +PIG +I + + TF+ ++L+ P + Sbjct: 131 MALLLFFGMNGHHVLISLLFDSYTVLPIGDFSIKPDILWYILEIFVQTFVWAIKLAIPLM 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ + +G+L++ +PQ+ ++ + P + +G + L L + + + F F Sbjct: 191 AVLLLTEVMLGVLSRALPQMNVFVMGMPIRLMIGLIMLLLVLPVYINLMEPLFADMF 247 >gi|188496134|ref|ZP_03003404.1| flagellar biosynthetic protein FliR [Escherichia coli 53638] gi|188491333|gb|EDU66436.1| flagellar biosynthetic protein FliR [Escherichia coli 53638] Length = 261 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTQNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|126653731|ref|ZP_01725649.1| flagellar biosynthesis protein R [Bacillus sp. B14905] gi|126589695|gb|EAZ83831.1| flagellar biosynthesis protein R [Bacillus sp. B14905] Length = 257 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 102/236 (43%), Gaps = 6/236 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L++ RV + + +P S IP QV++ A+ + ++ TID++ F Sbjct: 8 LTVFLLVLVRVSAFFVTVPFFSYRTIPPQVKITLALVLAWMMY----YTIDVEPFAFNDE 63 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y LVM E +G + GL+ + +Q GS I +G + + + Sbjct: 64 YILLVMKEALVGLLLGLVGYIIMSAIQIAGSFIDFQMGFAIANIIDPQTGAQSPLIGQFF 123 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLS 186 ++ L L I+ HH + + SY +P+ Q +F N + F I +++ Sbjct: 124 NMLAFLLLLAINGHHMILDGIYYSYQFLPMDQFPSFTNEGFPQFIITTFTAVFAIAFQMA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +P + + ++++G+ K VPQ+ I+ + P I + L L + +++ Sbjct: 184 APVVATLFLVDLALGITAKTVPQLNIFVVGFPIKIAVSFLVLFTMMAVMIQVIQKL 239 >gi|83814762|ref|YP_446684.1| flagellar biosynthetic protein FliR [Salinibacter ruber DSM 13855] gi|294508620|ref|YP_003572679.1| flagellar biosynthetic protein FliR [Salinibacter ruber M8] gi|83756156|gb|ABC44269.1| flagellar biosynthetic protein FliR [Salinibacter ruber DSM 13855] gi|294344949|emb|CBH25727.1| flagellar biosynthetic protein FliR [Salinibacter ruber M8] Length = 258 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 112/243 (46%), Gaps = 2/243 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M++ ++ + L+ RV ++ P IP++VR+ ++ + L F + Sbjct: 1 MSLLDTEYILRVLLVFVRVSGLMLAAPFFQQKTIPVRVRVLASVVLAYSLAGFATGPLP- 59 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 ++ + + +V+VE G V G R+ + F G+++ + L+L + + Sbjct: 60 EHVTHDVGFMLVVLVEAGTGLVMGFTARIIFWAVSFAGTIMGYQMALSLAQTYNPISGTS 119 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 PL ++ LLA + D HH + AL +S+ +P+G G + + F Sbjct: 120 SNPLGQILSYTFLLAFLLADGHHFLLRALAQSFEVVPLGGAELSGAG-PPMLGWMGDFFR 178 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + +RL++PFL + +I++G+ +LVPQ ++ +S P + +G + I+ V F Sbjct: 179 LAVRLAAPFLVILFLTDIALGIFARLVPQANLFTLSLPAKLLVGIGIFLVFIQGAVPFFP 238 Query: 241 HSF 243 F Sbjct: 239 SLF 241 >gi|91776318|ref|YP_546074.1| flagellar biosynthetic protein FliR [Methylobacillus flagellatus KT] gi|91710305|gb|ABE50233.1| flagellar biosynthetic protein FliR [Methylobacillus flagellatus KT] Length = 266 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 99/237 (41%), Gaps = 2/237 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 ++ + +L + R+ + I + P + +P V+L + ++ ++P + D + F Sbjct: 10 QVWVATLMWPLTRILAFIAVAPLFNHRALPNNVKLGLGLVLTVAVMPSIPDIPPVSVFSM 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ ++ +G G +R+ ++ G +GL T + Sbjct: 70 NGLL--ILCQQVIIGAAMGFSLRIIFSAVELAGHTAGMTMGLGFAMFYDPQTQGQSTSIG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ +L ID H V L +S+ + P+ E NFG F L + Sbjct: 128 QFLVVLSMLLFLSIDGHLVVISTLAESFSSFPVTAEPNFGLDPYKIALWGGKIFSAGLLM 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 S P + ++ N+++G+L + PQ+ ++ I P I LG L L L++ ++ Sbjct: 188 SLPIIAALLLANLALGVLTRAAPQLNLFGIGFPITISLGFLLLMLALPYMMQPVQRL 244 >gi|332533114|ref|ZP_08408983.1| flagellar biosynthetic protein FliR [Pseudoalteromonas haloplanktis ANT/505] gi|332037396|gb|EGI73850.1| flagellar biosynthetic protein FliR [Pseudoalteromonas haloplanktis ANT/505] Length = 259 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 96/237 (40%), Gaps = 2/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L + R+ S IM++ GL +P ++++ ++ + +++P L F Sbjct: 11 WLSDFLLPLVRISSMIMIMAGLGAKNVPTRIKMGLSVVVTFLVVPVLPPATFTNLFS--F 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V+ ++ +G G + G +++ GL + + S+ + + Sbjct: 69 EMILVVIQQMLIGVAIGFASILLLNTFVLAGQILAMQTGLGFASVIDPSNGASVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L + + H + +V S+ +PI + + V F L LS Sbjct: 129 FLILATLLFFAFNGHLMMIQMVVHSFQVLPIDGTWWSVDHYWDIVTWGGWMFTTALVLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L +V NIS G++ + PQ+ I+ I P+ + G + ++ QF +L Sbjct: 189 APLTAMLVINISFGIMTRAAPQLNIFAIGFPFTLVAGLTIIWATLGNFTLQFEFQWL 245 >gi|283785720|ref|YP_003365585.1| flagellar biosynthesis protein FliR [Citrobacter rodentium ICC168] gi|282949174|emb|CBG88782.1| flagellar biosynthesis protein FliR [Citrobacter rodentium ICC168] Length = 264 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L N Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERVIPKRVKLGLGIIITVVIAPALPPHNVPVFSFNAL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L M ++ +G G ++ ++ G +I +GL+ T + L L + Sbjct: 72 W---LAMQQILIGIALGFTMQFTFAAVRTAGEIIGLQMGLSFATFVDPGSRLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ +L + H + LV ++ T+PIG + N F + + F+ L L+ Sbjct: 129 IDMLAMLLFLTFNGHLWLISLLVYTFHTLPIGGDPVNSNAFLALASAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PVITMLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGMTLIAALMPLIAPFCEHLFSEIF 248 >gi|126665003|ref|ZP_01735986.1| flagellar biosynthesis protein R [Marinobacter sp. ELB17] gi|126630373|gb|EBA00988.1| flagellar biosynthesis protein R [Marinobacter sp. ELB17] Length = 259 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 94/228 (41%), Gaps = 2/228 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + R+ S +M++P +P +VRL A+ +I+++P + + A L Sbjct: 19 LWPLFRIASFLMVIPVFGTQLVPARVRLGLALLMTIIVVPMIPPVPQIDALSADAVVITL 78 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ +G G + G +I+ +GL + + ++ + L + I Sbjct: 79 --QQILIGVGLGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVNVAVLAQIYTITI 136 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L ++ H F ++S+ T+PIG E + + F+ + ++ P + Sbjct: 137 TLLFLAMNGHLVAFEVFIESFRTLPIGLEGLGQAGMWQLAHRISWMFVSAMLMALPAVTA 196 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ +IS G++ + PQ+ I+ + P + G + + + F Sbjct: 197 VLIVSISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFE 244 >gi|292669765|ref|ZP_06603191.1| flagellar protein required for flagellar formation [Selenomonas noxia ATCC 43541] gi|292648562|gb|EFF66534.1| flagellar protein required for flagellar formation [Selenomonas noxia ATCC 43541] Length = 260 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 104/242 (42%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + + L + R+ ++ P I R+ A+A ++VL P + + Sbjct: 8 QGHIAAFLLTLTRISGIFLISPFFGSMNIAPFFRVGIALAMTVVLFPVIDRLGVVTAPET 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ + ELF+G + G + + + G V+ +G + + + + Sbjct: 68 IIMFAVAAVGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQIPLIG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 S + + ++ L V + HH + ALV+S+ +P+ +I N F+ +++ Sbjct: 128 SFLYNLAVIILLVTNGHHMIIAALVESFRAVPLAGMEPNLSIALLLANFTGGIFVTGMKI 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F ++ N+ +G+L++ +PQ+ I+ + P + +G + L + I V F Sbjct: 188 AMPITFAILLTNVGLGILSRTMPQMNIFVVGIPMQLMIGIVVLSMIIPFYVLFLDVLFNE 247 Query: 246 GF 247 + Sbjct: 248 MY 249 >gi|157145256|ref|YP_001452575.1| flagellar biosynthesis protein FliR [Citrobacter koseri ATCC BAA-895] gi|157082461|gb|ABV12139.1| hypothetical protein CKO_00993 [Citrobacter koseri ATCC BAA-895] Length = 264 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L ++++ P L Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERTVPKRVKLGLGFMITLIIAPSLPANNVPVFSTEAL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 72 W---LAMQQIMIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSRLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG + N F + F+ L L+ Sbjct: 129 LDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGGDPVNSNAFLALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+S+GLLN++ PQ+ ++ I P + +G L + + +I H F F Sbjct: 189 PVITLLLTLNLSLGLLNRMAPQLSVFVIGFPLTLSVGILLITALMPLIAPFCEHLFGEIF 248 >gi|127512309|ref|YP_001093506.1| flagellar biosynthesis protein FliR [Shewanella loihica PV-4] gi|126637604|gb|ABO23247.1| flagellar biosynthetic protein FliR [Shewanella loihica PV-4] Length = 265 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 95/239 (39%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + + RV S +M++ + P +VRL ++A + + P L +++ F A Sbjct: 11 TLSAYMWPLFRVSSMLMVMAVFGANTTPTRVRLLLSVAITFAIAPMLPVNTEVELFSLGA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G + + TG +I L + + + + Sbjct: 71 VFVT--VQQILIGVAMGFVTLLIMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + +D H + LV S+ TIP+ + + F L +S Sbjct: 129 FLLLTTMIFLAVDGHLVMIRMLVASFDTIPVSMQGISIASYRRLAEWGAYMFGAALTMSI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F + Sbjct: 189 SAIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLIILWLTLTPIMAHFDEVWRSA 247 >gi|145598594|ref|YP_001162670.1| flagellar biosynthesis protein FliR [Yersinia pestis Pestoides F] gi|108779103|gb|ABG13161.1| flagellar biosynthetic protein FliR [Yersinia pestis Antiqua] gi|145210290|gb|ABP39697.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides F] Length = 284 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F + RV + I P LS I +V++ + + ++ P L +++ F + Sbjct: 35 VWVSQYFWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSLPP-VNIPLFSSA 93 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + + ++ +G G+ ++ ++ +G VI +GL+ T S L+ Sbjct: 94 ALWVA--IQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLSR 151 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ I+ L D H + L S+ T+PI GN F + FM L L+ Sbjct: 152 LLNILVTLLFLSFDGHLWLISLLADSFHTLPIQFAPLNGNGFLTLAQSGSMIFMNGLMLA 211 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F Sbjct: 212 LPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFSEF 271 Query: 247 F 247 F Sbjct: 272 F 272 >gi|87119471|ref|ZP_01075368.1| flagellar biosynthesis protein [Marinomonas sp. MED121] gi|86164947|gb|EAQ66215.1| flagellar biosynthesis protein [Marinomonas sp. MED121] Length = 260 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 4/237 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +S L R+G+ ++ LP + ++R+ FA +I++ P + Sbjct: 11 GLTVSFLLPFFRIGAFLLALPLFGTQLVSTRIRIAFAFVIAIIVTPSVPVPSYDPV---S 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 Y+ L+ ++ +G V G ++ V G + + GL S ++ ++ L Sbjct: 68 PYFVLLIAEQIIIGIVLGFVVSVLFQVFSLAGQLAAMKAGLGFAMSNDPANGISVATLGQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + LA + D HH +F LV+S+ PIG+ N + V + F L + Sbjct: 128 YYLTMVGLAFLLTDGHHVMFEYLVESFDYWPIGEGFNSE-YYYDIVLLGGWMFEKALLMV 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P +V N+S G++ K PQ+ I+ + P ++ F + +E + + F Sbjct: 187 LPLAIAVLVMNLSFGVVAKASPQLNIFALGFPVIMLFSLFFFWIMLEDFLDIYRLFF 243 >gi|149928150|ref|ZP_01916396.1| Bacterial export protein, family 1 [Limnobacter sp. MED105] gi|149823135|gb|EDM82373.1| Bacterial export protein, family 1 [Limnobacter sp. MED105] Length = 254 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 5/237 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 EI + S R+ + + P + + R+ A +I+++P L ++ Sbjct: 10 EIWIASFLWPFIRILAILATAPVFDNRTVQRRTRVGLAALIAILMMPLL----PAPPVLS 65 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A +++ ++ +G G +R+ + G ++ +GL + + + Sbjct: 66 SAQAIPVLIQQILIGVAMGFSMRLVFAAFEMAGDLLGLQMGLAFAQFIDPARGTQTPLIG 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 S +G++ +L VID H V A+V+S+ IPI L N S FM+ L++ Sbjct: 126 SFLGVLAMLTFLVIDGHLLVIAAVVQSFELIPISANLAVVNS-QSIAMAGSIMFMLALQI 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 S P + ++ NI +G+L + PQ+ + I IG+G L +S+ + + Sbjct: 185 SLPVMAAVLISNIVLGILARAAPQLNVMSIGFSITIGVGLWILWVSLPYFIAGIDGA 241 >gi|323705429|ref|ZP_08117004.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium xylanolyticum LX-11] gi|323535331|gb|EGB25107.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium xylanolyticum LX-11] Length = 260 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 108/237 (45%), Gaps = 4/237 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 ++ R+ +L P +P ++ A SI++ + ID N Y + Sbjct: 14 FLIVFVRMLGIFILTPLFGTKTLPSTFKIGLAFFTSIMIFELVNVKIDANNLYQ---YVE 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V E +G + GL + + G +I +G ++ + + + + + I+ Sbjct: 71 IVFNEFLIGLLIGLSSMISFSAIYLAGQIIDYQLGFSIVNVLAAGEETQVPLIGNFVYIL 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 LL +ID HH++F L +SY IP+G L+ +I + ++ F++ R+S+P + Sbjct: 131 TLLLFLLIDGHHKLFQLLFQSYSMIPVGTPFLHLESINTVITKIVSDMFVLGFRISAPIV 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I++ ++++ +PQ+ ++ I P I +G L + + + + F + Sbjct: 191 VSTLLTDITLSIISRTIPQLNVFMIGMPIKIFVGIFTLFIMLPMYLAVIDVLFNGMY 247 >gi|260438788|ref|ZP_05792604.1| flagellar biosynthetic protein FliR [Butyrivibrio crossotus DSM 2876] gi|292808777|gb|EFF67982.1| flagellar biosynthetic protein FliR [Butyrivibrio crossotus DSM 2876] Length = 258 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 103/224 (45%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R+ S + P +M+ P + +L A S+++ + D + + Y+ Sbjct: 14 FLLILVRIASFVYTAPFFNMANTPQRTKLGLAFFISLIVFTLVPDRT--LEYSSILEYAI 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G + G V + F G++I + IGL++ + + T +L Sbjct: 72 LVIKESVVGLLLGFSCMVCVQTITFAGNIIDSNIGLSMASEYDPTLRDQTTVSGTLYYYT 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L L V + + A+V +Y IPI +++SS V ++ F+I R++ P Sbjct: 132 VFLLLMVSGLYQFLISAIVDTYTIIPINGLSVNPSLYSSVVTLVSDYFIIGFRIALPVFV 191 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ N +G+L K+ Q+ ++ + I G + + +++ ++ Sbjct: 192 SLLIVNCVLGILAKVASQLNMFAVGIQIKILAGLVIMFVTVGLL 235 >gi|258514017|ref|YP_003190239.1| flagellar biosynthesis protein FliR [Desulfotomaculum acetoxidans DSM 771] gi|257777722|gb|ACV61616.1| flagellar biosynthetic protein FliR [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 106/236 (44%), Gaps = 1/236 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ FL+ R+ + +M P IP +++ F++ + ++ P + T Sbjct: 6 LLVVFFLVFIRITAFMMTAPFFEYRNIPNLLKIGFSLLLAGIVFPVIK-TSGFSVPGGVL 64 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y VM E +G + GL+ G++ G +I IG + + T + Sbjct: 65 GYILAVMAEAGVGLMLGLIASFIFHGIRMAGQLIDLQIGFAMAMVFDPLSEMQTTIIARF 124 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L+ ++ H+ + +LVKSY +P+ + + V F + ++S+ Sbjct: 125 LNLLALIFFLNVNGHYYLIESLVKSYDLVPLTAMAIKSGVVLTVVKFFSGMFALAFQISA 184 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++S+G +++ VPQ+ ++ + P I +G L L + + ++ F Sbjct: 185 PIIAVLVIIDLSLGFVSRTVPQLNVFMLGFPVKIVVGILTLSVVVPVLGTLLQDVF 240 >gi|167464150|ref|ZP_02329239.1| flagellar biosynthesis protein FliR [Paenibacillus larvae subsp. larvae BRL-230010] Length = 259 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 101/239 (42%), Gaps = 7/239 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L+ CR+ + +++P S +P Q ++ ++ ++++ L + Y Sbjct: 11 MLVFCRITAFFVVVPTFSSRNVPSQFKIGLSLVITLIVFTALGMNNPV---TMDGTYLLA 67 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G G + ++ +Q GS I +G + + + L + +I Sbjct: 68 IFREILVGITLGFVAYLFFTAVQIAGSFIDIQMGFGIANVIDPMTGASAPILGNFKYMIA 127 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIMLRLSSP 188 L + HH + A++ SY +P+ E+ G + V T F + +L++P Sbjct: 128 TLLFLSFNGHHLLLQAIMNSYDWVPMTNEVFARVFEGQVSEWIVRSFTTMFGLAFQLAAP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + ++ +GLL ++ PQ I+ + P+ + LG + L + + + F F F Sbjct: 188 IAAALFLTDLGLGLLTRVAPQFNIFVVGAPFKMLLGFVLLLMLLPELGSMFEKVFTTMF 246 >gi|313497811|gb|ADR59177.1| FliR [Pseudomonas putida BIRD-1] Length = 258 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 107/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV + +M +P +P ++RL A+A ++V++P L + R Sbjct: 12 WVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPPLPEFDPLSLRG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ +G + GL +++ G +++ +G+ + + ++ + T ++ Sbjct: 72 ML--LCAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVTVISQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + +++ H VF L +S+ T+P+G L N F + F L L Sbjct: 130 MTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLIL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + +G + + ++ + Sbjct: 189 PVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSHYQ 241 >gi|145298358|ref|YP_001141199.1| flagellar biosynthesis protein FliR [Aeromonas salmonicida subsp. salmonicida A449] gi|142851130|gb|ABO89451.1| flagellar biosynthetic protein FliR [Aeromonas salmonicida subsp. salmonicida A449] Length = 265 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 93/238 (39%), Gaps = 2/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S+ + RV +M++ P ++R+ A+A + ++ P L ++ F + Sbjct: 11 WLSSILWPLARVSGLLMVMAVFGSRLTPARIRIGLALALTFMIAPLLPPMPKVELFSVGS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + +L +G GL+ + G VI+ L T + + + + Sbjct: 71 FLV--LTQQLLIGIALGLMTQFLMESFVMAGQVIAMQTSLGFATLVDPMNGQSAPVVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + +V S+ T+P+ S V L + L ++ Sbjct: 129 YLMLATLVFLAVDGHLIMLRMVVLSFETLPVSDAGLTLPAIRSLVGFLGIMYQASLVMAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + ++ N + G++ + PQ+ I+ I + G L L+I + F + Sbjct: 189 SAIVALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLFILWLTIGGFLGHFDSMWER 246 >gi|329888174|ref|ZP_08266772.1| flagellar biosynthetic protein FliR [Brevundimonas diminuta ATCC 11568] gi|328846730|gb|EGF96292.1| flagellar biosynthetic protein FliR [Brevundimonas diminuta ATCC 11568] Length = 256 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI RVG+ +MLLPG SY+P +VRL A+ S+ L P + ++ A V Sbjct: 15 LIFARVGAILMLLPGFGESYVPPRVRLSLALVLSLALWPIVGASLPALPATLGAT-VGWV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 M E+ G G ++R + L G ++S L + + T L++ + ++G+ Sbjct: 74 MREVLTGLAIGAILRSFMTALTTAGEIVSLQTTLGFSQTANPLQAQPGTTLSAFLMLLGV 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 ++ + HH +V SY I + L + V L +FM+ ++L++P L F Sbjct: 134 TLVFATNTHHLFIGGMVGSYEAIAPAKPLIVSDFTQMAVKTLSQSFMLGVQLAAPVLVFA 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++FN++ GL+ +++P +YF + P + LG LS+ ++ F + Sbjct: 194 LIFNLASGLVARVMPSFQVYFAAAPLSVILGLSVFTLSLGVVGTVFIDRY 243 >gi|52080240|ref|YP_079031.1| flagellar biosynthesis protein FliR [Bacillus licheniformis ATCC 14580] gi|52785617|ref|YP_091446.1| flagellar biosynthesis protein FliR [Bacillus licheniformis ATCC 14580] gi|52003451|gb|AAU23393.1| flagellar protein [Bacillus licheniformis ATCC 14580] gi|52348119|gb|AAU40753.1| FliR [Bacillus licheniformis ATCC 14580] Length = 258 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 95/239 (39%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P S IP ++ FA ++V + Y Sbjct: 9 AFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSF---QAIEKPPHLDVDGIYM 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L M E +G + GL+ + +Q GS I +G + + + + Sbjct: 66 MLAMKEALIGLLLGLIAYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVGQFLYT 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQE---LNFGNIFSSFVNMLQTTFMIMLRLSS 187 + LL + ++ HH + + SY IP+ + T F+ +LS+ Sbjct: 126 MALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSFGSEEFAEFIAKSFNTMFITAFQLSA 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ H F + Sbjct: 186 PVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHVFEFA 244 >gi|326319059|ref|YP_004236731.1| flagellar biosynthetic protein FliR [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375895|gb|ADX48164.1| flagellar biosynthetic protein FliR [Acidovorax avenae subsp. avenae ATCC 19860] Length = 256 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 100/229 (43%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + M+ P SM IP++ ++ A ++ L D + VN Sbjct: 11 AWLSPVLWPFLRVLAVFMVAPVFSMRSIPVRAKIGLAFLVAVCAQAVLPDQPVIS--VNG 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 V ++ +G G +R+ ++ G V+ +GLN + S S + + Sbjct: 69 RGALGAVAQQVAVGMSVGFAVRLVFSAVELAGEVVGLQMGLNFASFFDPSTSGQVSAVGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G + +L VI+ H V A+VKS+ + P+ ++ + F L ++ Sbjct: 129 FFGHMAMLLFVVINGHLMVLMAVVKSFDSFPVDGNFLQSIGQMRLHDLGASLFSSALWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + N+++G+++++ PQ+ IY + P + +G L + ++ ++ Sbjct: 189 LPMIALLTFVNLALGVISRVAPQMNIYAVGFPVTLTVGLLGIAATLPML 237 >gi|308273531|emb|CBX30133.1| hypothetical protein N47_D29420 [uncultured Desulfobacterium sp.] Length = 260 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 107/229 (46%), Gaps = 1/229 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 I+ RVG + L+P + IP+ V+ + +++L P + + Sbjct: 14 FLFILIRVGVILFLMPFFNSRIIPVPVKAGLTIILAMILFPVSGPYTGVYPDTTWGMFG- 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ EL G + GL+ + + G++ G + IG ++ + + L+++ ++ Sbjct: 73 LIIGELITGMILGLMTQFFFEGIRMMGQIAGMEIGFSIANVLDPQSGFQTSILSNIAYLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 ++ +++ H+ + A+ +S+ I G +F ++ F+I +++ +P + Sbjct: 133 AIVLFLILNGHYIILNAIRESFAIIQPGSVHLTQQVFKEMLHRSGEMFVIAIQIGAPVIS 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + ++ GL+ +L+PQ+ + ++ P I G +F +S+ ++++ Sbjct: 193 AILFIQLAFGLITRLLPQMNVMVVAFPLQIVTGLIFFGISLWVMLHFIE 241 >gi|319764503|ref|YP_004128440.1| flagellar biosynthetic protein flir [Alicycliphilus denitrificans BC] gi|317119064|gb|ADV01553.1| flagellar biosynthetic protein FliR [Alicycliphilus denitrificans BC] Length = 254 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 101/229 (44%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + P SM IP++VR+ A ++ L + +N Sbjct: 11 AWLSPVLWPFLRVLALFTSAPVFSMRAIPVRVRIGLAFLVALCAQAALPGQPVID--LNG 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + V+ ++ +G G +R+ + ++ G VI +GLN + + + + + Sbjct: 69 REAAGAVLQQVGVGLAIGFAVRLVFVAVELAGEVIGLQMGLNFASFFDPASNAQVSAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G I +L V++ H V A+VKS+ + P+ + + F L ++ Sbjct: 129 FFGNIAMLLFVVVNGHLMVLMAVVKSFESFPVDGHFLQAVAQMRLHELGASVFASGLWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++ Sbjct: 189 LPMIALLLFVNLTLGVISRVAPQMNIYAVGFPVTLTVGMLGITATLPML 237 >gi|26991042|ref|NP_746467.1| flagellar biosynthesis protein FliR [Pseudomonas putida KT2440] gi|24986074|gb|AAN69931.1|AE016632_2 flagellar biosynthetic protein FliR [Pseudomonas putida KT2440] Length = 258 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 107/233 (45%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L + RV + +M +P +P ++RL A+A ++V++P L + R Sbjct: 12 WVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPPLPEFDPLSLRG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ +G + GL +++ G +++ +G+ + + ++ + T ++ Sbjct: 72 ML--LCAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVTVISQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + +++ H VF L +S+ T+P+G L N F + F L L Sbjct: 130 MTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLIL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V NI+ G++ + PQ+ I+ I P + +G + + ++ + Sbjct: 189 PVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSHYQ 241 >gi|119775420|ref|YP_928160.1| flagellar biosynthesis protein FliR [Shewanella amazonensis SB2B] gi|119767920|gb|ABM00491.1| flagellar biosynthetic protein FliR [Shewanella amazonensis SB2B] Length = 262 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 92/236 (38%), Gaps = 2/236 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + + R+ + M++P + P++VRL ++A + + P L + F + + Sbjct: 14 AYTWPLFRISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPMPQGELFALSSVFI 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 ++ +G GL+ + TG +I L + L + + Sbjct: 74 SA--QQVLIGVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSGQQTPVLGNFFLL 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L +D H + LV S+ T+P+ + S F L +S + Sbjct: 132 LATLIFLAVDGHLTMIRMLVMSFDTLPVSMTGITLANYHSLALWGSYMFGAALTMSLSAI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 ++ N+S G++ + PQ+ I+ I P ++ G L L++ ++ F + Sbjct: 192 VALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSHFGEIWEAA 247 >gi|119899018|ref|YP_934231.1| flagellar biosynthesis protein FliR [Azoarcus sp. BH72] gi|119671431|emb|CAL95344.1| flagellar biosynthesis protein FliR [Azoarcus sp. BH72] Length = 270 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 2/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + +L + R+ P S IP+++R MA I L Q Sbjct: 10 DAWLAALMFPLARLLGLFATAPVFSNRAIPVRIR--LTMALGIALALLPALPAMPQTPPG 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +++ ++F+G G +IR+ + GS+I +GL+ L+ Sbjct: 68 GGIGLLVMVQQMFIGIAIGFMIRIVFAAIDMAGSLIGMQMGLSFAVFFDPDAGGQTAVLS 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ L I+ H + AL++S+ +PIG + + ++ F L L Sbjct: 128 DFLSLVATLLFLSINGHLMLVAALIRSFEWLPIGLNVVSASGWAYIARAGAAVFATGLLL 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P + +V NI++G+L + PQ+ ++ I P + +G + L L + F + Sbjct: 188 SLPIVAVLLVANIALGILTRAAPQLNLFAIGFPVTLAMGFMGLILIMTNFGPVVVSLFEH 247 Query: 246 GF 247 GF Sbjct: 248 GF 249 >gi|295706268|ref|YP_003599343.1| flagellar biosynthetic protein FliR [Bacillus megaterium DSM 319] gi|294803927|gb|ADF40993.1| flagellar biosynthetic protein FliR [Bacillus megaterium DSM 319] Length = 258 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 7/237 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ RV S + +P S IP ++ + + S+++ TIDL A + Sbjct: 10 AFLLVLVRVTSFFITVPLFSYKTIPAVHKVGLSASLSVIIA----TTIDLPVVSLDAQFL 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E +G GL V+ + +Q G +I +G + + L + + Sbjct: 66 LLVVKECAVGLFIGLTAYVFIMAIQIAGGLIDFQVGFAIANVIDPQTGAQSPILGQYLYV 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 LL L + HH + + SY IP+ + + + + + + F++ +++S Sbjct: 126 FALLFLLSTNGHHLLIDGIYNSYLIIPLDKVAFPVGSQAFATHIITVFSSMFLVAVQMSL 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 P + + +I++G++ + VPQ+ I+ + P I + + L + + + Y F Sbjct: 186 PLVGSLFLVDIALGIVARTVPQLNIFVVGFPVKIIVAFILLIVVMGSMFYMMQIIFE 242 >gi|157961201|ref|YP_001501235.1| flagellar biosynthesis protein FliR [Shewanella pealeana ATCC 700345] gi|157846201|gb|ABV86700.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC 700345] Length = 266 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 2/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + R+ S M++ + P +VRL ++ + + P L ++ F A Sbjct: 12 IAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAMPNIDLFSLSAA 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ +G G + TG +I L + + S + + Sbjct: 72 FVTA--QQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVVGNFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + +D H + ++ S+ +IP+ + + F + F L +S Sbjct: 130 LLLTTMIFLAVDGHLLLIKMVIASFESIPVSMQGLSLASYRLFTEFVGYMFGAALTMSLS 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + N+S G++ + PQ+ I+ I P + G L L++ I+ F + Sbjct: 190 AIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHFDEVW 244 >gi|28211317|ref|NP_782261.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88] gi|28203757|gb|AAO36198.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88] Length = 539 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 108/237 (45%), Gaps = 1/237 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ ++ R+ + P P +++ F + S +L+P + D + N N Sbjct: 8 AFFTAVIMVFLRLIGFFTVTPVFFPKGTPAILKVAFTLILSYMLVPGI-DYSQISNINNT 66 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + E+ G G + ++ + ++ G+ + +G ++ + + + S T + Sbjct: 67 MVFITNCSSEIITGLALGFMTQLCFMAIRLGGNYMDIQVGFSMVSMLDPNTSSNSTLIER 126 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ GL+ +++D HH + L+ S+ + IG+ + S + + F++ L+++ Sbjct: 127 LLYWTGLILFFMVDGHHMLITQLIDSFNAVTIGRFILNQETASIIIEVFIQFFIMGLKIA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + I+ +++GL+ + VPQ+ + + P I +G L L++ II + F Sbjct: 187 IPIVLIIIIAELTLGLVGRAVPQLNVMILGLPLKIIVGLATLILAMPIIFKLIATGF 243 >gi|121997284|ref|YP_001002071.1| flagellar biosynthetic protein FliR [Halorhodospira halophila SL1] gi|121588689|gb|ABM61269.1| flagellar biosynthetic protein FliR [Halorhodospira halophila SL1] Length = 263 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 105/242 (43%), Gaps = 3/242 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+G+ ++ P +P+QVR+ +A +I +LP + + + Sbjct: 10 AWVGTFMYPLMRIGAAALVAPVFGNDMVPLQVRVFIGVALTIAVLPAVGEVPPVDPLSPD 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + E+ +G G+++ + G I+ A+GL T + ++ ++ Sbjct: 70 GLL--IAVQEILVGLTIGMVLALALNTAVIAGESIALAMGLGFATMVDPQTGMSVPVISQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ I L + H + L S+ +PIG+ + ++F + + ++ Sbjct: 128 LLLTIVTLLFLAVGGHLMLIQLLADSFSAVPIGEIVLDRDVFWGVAAWGTQMYAGAVLIA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL-CLSIEIIVYQFSHSFLY 245 P + +V N+S+G++ + PQ+ ++ + P I +G + + L + + + + + Sbjct: 188 LPLVTVLLVINLSLGVMTRAAPQMNVFSVGLPLTILVGGVLMPILVLPALPARMAMMWSE 247 Query: 246 GF 247 + Sbjct: 248 AY 249 >gi|255263738|ref|ZP_05343080.1| flagellar biosynthetic protein FliR [Thalassiobium sp. R2A62] gi|255106073|gb|EET48747.1| flagellar biosynthetic protein FliR [Thalassiobium sp. R2A62] Length = 260 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 120/236 (50%), Gaps = 3/236 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +I RVG+ + +LPGL +P +VRL A+A ++++ P + DL + Sbjct: 15 WLFGAAVIFLRVGAMMAVLPGLGERSVPARVRLGLAIALTVLVTPLIAP--DLPEPEEVS 72 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+++E +G + G+ +R++ L G++ + + L+ G + + A+ + + Sbjct: 73 NLVGLLLIEASIGLLLGMSLRLFVFTLSTAGAIAAQSTSLSQIFG-GSAGAEAQPAIGHV 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + GL + + H +V +V SYG+ P G L+ + V+ + +F L++ Sbjct: 132 LVTGGLTIAMITELHLRVVEFIVMSYGSFPTGVPLSATFVADFGVSRVAASFAFAFTLAA 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 PF +++N+++G++N+ +PQ+ + F+ P + G + L LS ++ + +F Sbjct: 192 PFFIASLIYNVTLGVINRAMPQLMVSFVGAPVITAGGLVLLALSAPTLLGLWIDAF 247 >gi|319645981|ref|ZP_08000211.1| flagellar biosynthetic protein fliR [Bacillus sp. BT1B_CT2] gi|317391731|gb|EFV72528.1| flagellar biosynthetic protein fliR [Bacillus sp. BT1B_CT2] Length = 258 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 95/239 (39%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R+ + + +P S IP ++ FA ++V + Y Sbjct: 9 AFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSF---QAIEKPPHLDVDGIYM 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L M E +G + GL+ + +Q GS I +G + + + + Sbjct: 66 MLAMKEALIGLLLGLIAYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVGQFLYT 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQE---LNFGNIFSSFVNMLQTTFMIMLRLSS 187 + LL + ++ HH + + SY IP+ + T F+ +LS+ Sbjct: 126 MALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSFGSEEFAEFIAKSFNTMFITAFQLST 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ H F + Sbjct: 186 PVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHVFEFA 244 >gi|297538206|ref|YP_003673975.1| flagellar biosynthetic protein FliR [Methylotenera sp. 301] gi|297257553|gb|ADI29398.1| flagellar biosynthetic protein FliR [Methylotenera sp. 301] Length = 270 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 108/241 (44%), Gaps = 3/241 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++SL + R+ I P + + IP QV+L + ++++ P L + F Sbjct: 10 QTWIVSLLWPLTRILGVIAAAPIFNHTAIPNQVKLGLGIMLTLIIAPTLPAMPHFEIFSF 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + +++ +L +G G +R+ ++ G +I ++GL T +N Sbjct: 70 QGLL--ILVQQLVIGLAIGFSMRLVFSAVELAGQLIGMSMGLGFAGFYDPQSQGQSTAVN 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ +L +D H + A+ S+ T+PI + + +T F + L L Sbjct: 128 QFLVLLAMLIFLSLDGHLLIITAVANSFLTMPITVGSSGIDPLK-IAMWGETIFSVGLIL 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P + ++ N+++G+L K PQ+ ++ I P + +G + + LS+ ++ + Sbjct: 187 ALPAVAALLITNMALGILTKTAPQLNLFGIGFPVTLSIGLVVIALSLPGMLKPIENFIEQ 246 Query: 246 G 246 G Sbjct: 247 G 247 >gi|212634379|ref|YP_002310904.1| flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3] gi|212555863|gb|ACJ28317.1| Flagellar biosynthetic protein FliR [Shewanella piezotolerans WP3] Length = 266 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 91/235 (38%), Gaps = 2/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + R+ S M++ + P +VRL ++ + ++P L D++ F A Sbjct: 12 IAGYMWPLTRISSMFMVMAVFGANTTPSRVRLLLSLTVTAAVVPVLPPMPDIELFSLSAV 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ +G G + TG +I L + + + + Sbjct: 72 FVT--FQQIIIGVSMGFSTLLLMQTFVLTGQIIGMQTSLGFASMIDPGSGQQTPVVANFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + +D H + +V S+ +IP+ E + F + F L +S Sbjct: 130 LLLTTMIFLAVDGHLILIKMVVASFDSIPVSMEGLSLASYRMFTEFVGYMFGAALTMSLS 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + N+S G++ + PQ+ I+ I P + G L L++ I+ F + Sbjct: 190 AIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVSGLFILWLTLTPIMAHFDEVW 244 >gi|89056678|ref|YP_512129.1| flagellar biosynthetic protein FliR [Jannaschia sp. CCS1] gi|88866227|gb|ABD57104.1| flagellar biosynthetic protein FliR [Jannaschia sp. CCS1] Length = 256 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 116/243 (47%), Gaps = 5/243 (2%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 EI + + + RVG+C ++LPGL IP++VRL A+AF++ L P + + + + Sbjct: 12 SEIWLATGIAVFLRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVSAVI 71 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 E G + G+ +R LQ G++ + + L+ +G + + Sbjct: 72 PPLT---AFFSEAIAGLIIGMALRYLVHALQVAGTIAAQSTSLS--QILGGATPDPLPAM 126 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 +++ + GL + H + + SY +P G ++ V+ + +F + + Sbjct: 127 GAILMLGGLTLAVISGLHVHLVQTFLHSYDVLPFGNLPGPRDLAGWSVDQVSASFSLAVS 186 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L++PFL +++N+++G++NK +PQ+ + F+ P + G L ++ I+ + H+F Sbjct: 187 LAAPFLVASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPVWLHAFE 246 Query: 245 YGF 247 Sbjct: 247 GAL 249 >gi|240137265|ref|YP_002961734.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens AM1] gi|240007231|gb|ACS38457.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens AM1] Length = 256 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 1/237 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV-NRA 67 + +FLI CR+G C++++PG S +P QVRL A S+ + P L + Sbjct: 14 FLGVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAGGVSLAVTPLLLPLFQTKLLGQAPT 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + E G + GLL R++ L+ + +ST +G + + A + SL Sbjct: 74 ETLTWIASETVTGLLIGLLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + ++ D H ++F LV SYG IP G+ + + F + LR+++ Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYGRIPPGEGFGTQTALVRIADQIAEAFTLALRIAA 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PF+ + + N++ G +NKL P IP+YF++TP+++ L L + QF ++ Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFVATPFVMFGALLLLYTLSSEFMTQFLSGYV 250 >gi|307824491|ref|ZP_07654716.1| flagellar biosynthetic protein FliR [Methylobacter tundripaludum SV96] gi|307734475|gb|EFO05327.1| flagellar biosynthetic protein FliR [Methylobacter tundripaludum SV96] Length = 238 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 2/231 (0%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + +P S+ +P +VRL ++ ++V++P L ++ F + + + + Sbjct: 1 MRISAMFVAVPLFSIKAVPARVRLILSVVITLVVMPLLPPLPSVEMFSYAGFMTA--IAQ 58 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G G ++++ F G ++ ++GL + + L + L Sbjct: 59 VMIGLTTGFILQLVFAAAVFAGQSVALSMGLGFSMMVDPQSGQQVPVIAQLYTVTTTLIF 118 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 +D H + L+ S+ T+PIG + S + F L L+ P + ++ Sbjct: 119 ISLDGHLLLIQMLLDSFKTLPIGIDGIDKAGIWSIIAWSSRMFAGGLLLTMPIIASLLLV 178 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 NI G+ + PQ+ I+ + P + LG L + ++ ++ QFS + Sbjct: 179 NIIFGVAARAAPQLQIFSVGIPVTLMLGLLLIWKTLPDVLDQFSGMLTDAY 229 >gi|117619054|ref|YP_855916.1| flagellar biosynthesis protein FliR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560461|gb|ABK37409.1| flagellar biosynthetic protein FliR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 263 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 94/238 (39%), Gaps = 2/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S+ + RV +M++ P +VR+ A+A ++++ P L ++ F + Sbjct: 11 WLSSIVWPLARVSGLLMVMAVFGSRLTPARVRISLALALTLMIAPLLPPMPKIELFSVGS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + +L +G GL+ + G +I+ L T + + + + Sbjct: 71 FLV--LGQQLLIGVALGLMTQFLMESFVMAGQIIAMQTSLGFATLVDPMNGQSAPVVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + +V S+ T+P+ + L + L ++ Sbjct: 129 YLMLATLVFLAVDGHLIMLRMVVLSFDTLPVSDSGLSLPSIRDLIGFLGVMYQASLVMAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + ++ N + G++ + PQ+ I+ I + G L L L+I + F + Sbjct: 189 SAIVALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLLILWLTIGGFLGHFDSMWER 246 >gi|239826630|ref|YP_002949254.1| flagellar biosynthesis protein FliR [Geobacillus sp. WCH70] gi|239806923|gb|ACS23988.1| flagellar biosynthetic protein FliR [Geobacillus sp. WCH70] Length = 257 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ RV S LP S IP ++ + S ++ +I Y Sbjct: 10 AFLLVFARVASFFATLPLFSYRTIPAVHKIGLSFFLSWMMF----FSISKPAIPLDGMYV 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E+ +G GL + +Q G +I +G + + + + Sbjct: 66 LLVVKEVLVGLFIGLFAYMIVSAIQIVGGLIDFQMGFAIANVIDPQTGAQSPLVGQYLYT 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLSSP 188 LL L +D HH + + SY IP+ +F G++ V T F+I ++S P Sbjct: 126 FALLLLLSVDGHHLLLDGVFYSYRFIPLDHWPHFDHGHVAKYIVKSFSTMFIIAFQMSVP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++++G++ + VPQ+ I+ + P I + L +++ + H F F Sbjct: 186 LVGSLFLVDVALGIVARTVPQLNIFVVGFPVKIAAAFILLIVTMATLFIAVRHLFDMMF 244 >gi|163850131|ref|YP_001638174.1| flagellar biosynthesis protein FliR [Methylobacterium extorquens PA1] gi|218528735|ref|YP_002419551.1| flagellar biosynthesis protein FliR [Methylobacterium chloromethanicum CM4] gi|254559276|ref|YP_003066371.1| flagellar biosynthesis protein FliR [Methylobacterium extorquens DM4] gi|163661736|gb|ABY29103.1| putative flagellar biosynthetic protein [Methylobacterium extorquens PA1] gi|218521038|gb|ACK81623.1| flagellar biosynthesis protein FliR [Methylobacterium chloromethanicum CM4] gi|254266554|emb|CAX22318.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens DM4] Length = 256 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 115/237 (48%), Gaps = 1/237 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-NFVNRA 67 + +FLI CR+G C++++PG S +P QVRL A S+ + P L + + Sbjct: 14 FLGVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAGGVSLAVTPLLLPLFQTKLSGQAPT 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + E G + GLL R++ L+ + +ST +G + + A + SL Sbjct: 74 ETLTWIASETVTGLLIGLLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + ++ D H ++F LV SYG IP G+ + + F + LR+++ Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYGRIPPGEGFGTQTALVRIADQIAEAFTLALRIAA 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PF+ + + N++ G +NKL P IP+YF++TP+++ L L + QF ++ Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFVATPFVMFGALLLLYTLSSEFMTQFLSGYV 250 >gi|304311112|ref|YP_003810710.1| Flagellar biosynthesis protein FliR [gamma proteobacterium HdN1] gi|301796845|emb|CBL45057.1| Flagellar biosynthesis protein FliR [gamma proteobacterium HdN1] Length = 259 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 106/238 (44%), Gaps = 2/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F CR+G+ + +P + +P ++R+ A++ ++V+ P L ++ + Sbjct: 11 WIAEYFWPFCRIGALFLAIPLIGTRSVPQRIRIVLALSVTVVVAPLLGKMPAVELLSVDS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + + + + G ++++ G +++ GL + + ++ L+ ++ + Sbjct: 71 WLIVIQQLLIG--LLLGFVVQLLFQLFIVGGQMVAMQNGLGFSSLVDPTNGLSVAVISQI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L + ++ H + +V S+ +P+ + + + F + LS Sbjct: 129 YLMTVNLVFFTLNGHLALIRFIVDSFQYLPVSTSGIAPDGYYMVIMHAVWMFQNAVLLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + +V N+S G+++++ PQ+ I + P + G + L +++ ++ + +F Sbjct: 189 PAVTALLVTNLSFGVMSRVAPQLNIMSVGFPMNMVAGVIVLWVTLPSLLPLYERTFDE 246 >gi|261855326|ref|YP_003262609.1| flagellar biosynthetic protein FliR [Halothiobacillus neapolitanus c2] gi|261835795|gb|ACX95562.1| flagellar biosynthetic protein FliR [Halothiobacillus neapolitanus c2] Length = 258 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 99/235 (42%), Gaps = 2/235 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + S ++ RV + +M++P +P + R+ A+ FS+++ P L + Sbjct: 10 GWVGSYVWVLVRVAALLMVVPIFGARGVPKRWRILAALVFSLIIAPTLPPVPTIDPLSVA 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 LV ++ +G G ++ + G ++ +GL ++ + ++ ++ Sbjct: 70 GIL--LVAQQIIIGVTMGFVLGLIVSSFVVAGESMALGMGLGFAQTVDPQNGVSVPIVSQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ L +D + L S+ +PI F V Q+ F+ + ++ Sbjct: 128 FLTVVATLLFISLDGPALIVKMLADSFVWLPIAPVGLSPETFWRVVGFGQSMFINAILIA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ N+++G++ + PQ+ I+ I P + +G + +S V H Sbjct: 188 LPVIISLLMVNLAMGVITRAAPQLNIFSIGFPATLLIGFFLILVSSPTWVPILEH 242 >gi|294500922|ref|YP_003564622.1| flagellar biosynthetic protein FliR [Bacillus megaterium QM B1551] gi|294350859|gb|ADE71188.1| flagellar biosynthetic protein FliR [Bacillus megaterium QM B1551] Length = 258 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 7/237 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ RV S + +P S IP ++ + + S+++ TIDL A + Sbjct: 10 AFLLVLVRVTSFFITVPLFSYKTIPAVHKVGLSASLSVIIA----TTIDLPVVSLDAQFV 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E +G GL V+ + +Q G +I IG + + L + + Sbjct: 66 LLVVKECAVGLFIGLTAYVFIMAIQIAGGLIDFQIGFAIANVIDPQTGAQSPILGQYLYV 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 LL L + HH + + SY IP+ + + + + + + F++ +++S Sbjct: 126 FALLFLLSTNGHHLLIDGIYNSYLIIPLDKTAFPVGSQAFATHIITVFSSMFLVAVQMSL 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 P + + +I++G++ + VPQ+ I+ + P I + + L + + + Y F Sbjct: 186 PLVGSLFLVDIALGIVARTVPQLNIFVVGFPVKIIVAFILLIVVMGSMFYMMQIIFE 242 >gi|222112238|ref|YP_002554502.1| flagellar biosynthetic protein flir [Acidovorax ebreus TPSY] gi|221731682|gb|ACM34502.1| flagellar biosynthetic protein FliR [Acidovorax ebreus TPSY] Length = 247 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 100/229 (43%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + P SM IP++ R+ A ++ L + + Sbjct: 2 AWLSPVLWPFLRVLALFTSAPVFSMRVIPVRTRIGLAFLVAVCAQAVLPEQPVISLNSRE 61 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + V+ ++ +G G +R+ ++ G +I +GLN + + + + + Sbjct: 62 A--AGAVVQQVGIGLAMGFAVRLVFAAVELAGEIIGLQMGLNFASFFDPASNAQVSAVAR 119 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G I +L VI+ H V A+VKS+ + P+G + + F L ++ Sbjct: 120 FFGNISMLLFVVINGHLMVLMAVVKSFDSFPVGGNFLQAIGQMRLHELGASLFSSALWIA 179 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++ Sbjct: 180 LPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGMLGITATLPML 228 >gi|311030113|ref|ZP_07708203.1| flagellar biosynthesis protein FliR [Bacillus sp. m3-13] Length = 258 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 104/241 (43%), Gaps = 7/241 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ RV + + LP S +P ++ F++V+ ++DL Y Sbjct: 10 AFLLVLTRVTAFFVTLPLFSYRNVPSTFKVGLGFFFALVM----SFSLDLPIIGIDGTYI 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ EL +G + GL+ + +Q G I +G + + + + Sbjct: 66 LLVIKELMVGLLIGLVAYMVLSAIQIAGGFIDFQMGFAIANVIDPQTGIQSPIMGQFFYT 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSS 187 LL L ++ HH + + SY I + Q +F + + T F+I L+L+ Sbjct: 126 FALLLLLAVNGHHLMMDGIFYSYEMIAVTQAWIPLGEAQVFEFVLKTINTMFVIALQLAI 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++++G++ + VPQ+ ++ + P IG+ + + S+ I+ F F Sbjct: 186 PIVGVLFLVDVALGIVARTVPQLNVFVVGLPLKIGVSFITIIFSLTILFTLFYKLFELML 245 Query: 248 F 248 + Sbjct: 246 Y 246 >gi|188579933|ref|YP_001923378.1| flagellar biosynthesis protein FliR [Methylobacterium populi BJ001] gi|179343431|gb|ACB78843.1| putative flagellar biosynthetic protein [Methylobacterium populi BJ001] Length = 256 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 1/237 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-NFVNRA 67 +S+FLI CR+G C++++PG S +P QVRL A S+ + P L + Sbjct: 14 FLSVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAAGVSLAVTPLLLPLFQGRLPGQAPT 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + E G + G L R++ L+ + +ST +G + + A + SL Sbjct: 74 ETLVWIASESITGLLIGFLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + ++ D H ++F LV SY IP G+ + + F + LR+++ Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYARIPPGEGFGTQTALVRIADQIGEAFTLALRIAA 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PF+ + + N++ G +NKL P IP+YFI+TP+++ + L + QF ++ Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFIATPFVMFGALILLYTLSSEFMTQFLSGYV 250 >gi|16125328|ref|NP_419892.1| flagellar biosynthesis protein FliR [Caulobacter crescentus CB15] gi|221234067|ref|YP_002516503.1| flagellar biosynthesis protein FliR [Caulobacter crescentus NA1000] gi|3023777|sp|Q45975|FLIR_CAUCR RecName: Full=Flagellar biosynthetic protein fliR gi|535424|gb|AAA66207.1| FliR [Caulobacter crescentus CB15] gi|13422378|gb|AAK23060.1| flagellar biosynthesis protein FliR [Caulobacter crescentus CB15] gi|220963239|gb|ACL94595.1| flagellar biosynthesis protein FliR [Caulobacter crescentus NA1000] Length = 251 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 120/230 (52%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ RVG+ +M +PG+ IP ++RL FA+ +++L P + +T+ V Sbjct: 15 LVFARVGAMVMTMPGIGDQAIPARIRLSFALLMALILAPLVQNTVGPIP-STLGGLGGAV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G ++R++ L G +IS L+ S S + T + + + ++GL Sbjct: 74 IHEVLIGLMIGSVLRLFMTSLTTAGEIISMQTTLSFAQSTNPSMEGSSTAVATFLSMLGL 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + D HH A+VKSY P + + + + V + +F + ++L++P + F Sbjct: 134 TLVMATDLHHLFIAAIVKSYTIFPFTRAVPVNDAAALAVQTVAQSFSLGVQLAAPVIVFS 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +VFN++ GL+ +++P I+F+++P + LG L LS+ I ++ + Sbjct: 194 LVFNLATGLVGRIMPAFQIFFVASPLSVILGLSLLALSLSGIAMVWTDRY 243 >gi|330826719|ref|YP_004390022.1| flagellar biosynthetic protein FliR [Alicycliphilus denitrificans K601] gi|329312091|gb|AEB86506.1| flagellar biosynthetic protein FliR [Alicycliphilus denitrificans K601] Length = 254 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 99/229 (43%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + P SM IP++VR+ A ++ L + Sbjct: 11 AWLSPVLWPFLRVLALFTSAPVFSMRAIPVRVRIGLAFLVALCAQAALPGQPVIDLGGRE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + V+ ++ +G G +R+ + ++ G VI +GLN + + + + + Sbjct: 71 A--AGAVLQQVGVGLAIGFAVRLVFVAVELAGEVIGLQMGLNFASFFDPASNAQVSAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G I +L V++ H V A+VKS+ + P+ + F L ++ Sbjct: 129 FFGNIAMLLFVVVNGHLMVLMAVVKSFESFPVDGHFLQAVAQMRLHELGAAVFASGLWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++ Sbjct: 189 LPMIALLLFVNLTLGVISRVAPQMNIYAVGFPVTLTVGMLGITATLPML 237 >gi|88858096|ref|ZP_01132738.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] gi|88819713|gb|EAR29526.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] Length = 259 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 96/236 (40%), Gaps = 2/236 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M L + R+ + +M++ G+ + +P +++ A+ ++V++P L F Sbjct: 11 WMADFLLPLTRISAMLMVMVGIGVRTVPTRIKAALAVMVTLVVIPVLPPAEFTNLFS--F 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V+ + +G G + G +++ GL T + ++ + Sbjct: 69 EMVLVVLQQTLIGVAMGFASVLMLNTFVMAGQLLAMQSGLGFATMIDPTNGQNVPAVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L W D H + LV S+ TIPI F F L LS Sbjct: 129 YLILATLLFWTYDGHLIMVKMLVLSFTTIPIDGNWWHVANFREVAVWGGWLFATALVLSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L ++ +IS G++ + PQ+ I+ I P+ + +G + + ++ V QF + Sbjct: 189 APLTAMLITSISFGVMTRAAPQLNIFSIGFPFTLMMGLIIIWATMGNFVVQFDFQW 244 >gi|302037620|ref|YP_003797942.1| flagellar biosynthetic protein FliR [Candidatus Nitrospira defluvii] gi|300605684|emb|CBK42017.1| Flagellar biosynthetic protein FliR, export component [Candidatus Nitrospira defluvii] Length = 263 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +++ R+ + + P L+ IPM V+ +VL P + + Sbjct: 15 FQAFSILLVRIAGIVSVFPILNTRTIPMPVKTGLVATLGLVLAPIIHL---PNLPNDPVL 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + E +G GL +R+ G Q G +I T +G + + Sbjct: 72 VIAGIGSEFLIGLTIGLAVRLLFSGFQVAGDMIGTQMGFSAIQMFDPMSHQNTPIIAQFQ 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +G L ++ H V +A+ SY +P I +++ Q + L+L++P Sbjct: 132 LTLGSLVFLSLNAHLLVVHAIGMSYEYVPPFGASLSDGIAQDIIHLAQNMLGVALKLAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ N + +L + VPQ+ ++ S P IG G L + L++ + F F Sbjct: 192 VFATLLIVNTVLAILGRAVPQMNVFVTSFPITIGAGFLAMSLAMPFTLLLFEKEFE 247 >gi|121596082|ref|YP_987978.1| flagellar biosynthetic protein FliR [Acidovorax sp. JS42] gi|120608162|gb|ABM43902.1| flagellar biosynthetic protein FliR [Acidovorax sp. JS42] Length = 256 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 100/229 (43%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + P SM IP++ R+ A ++ L + + Sbjct: 11 AWLSPVLWPFLRVLALFTSAPVFSMRVIPVRTRIGLAFLVAVCAQAVLPEQPVISLNSRE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + V+ ++ +G G +R+ ++ G +I +GLN + + + + + Sbjct: 71 A--AGAVVQQVGIGLAMGFAVRLVFAAVELAGEIIGLQMGLNFASFFDPASNAQVSAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G I +L VI+ H V A+VKS+ + P+G + + F L ++ Sbjct: 129 FFGNISMLLFVVINGHLMVLMAVVKSFDSFPVGGNFLQAIGQMRLHELGASLFSSALWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++ Sbjct: 189 LPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGMLGITATLPML 237 >gi|299534769|ref|ZP_07048099.1| flagellar biosynthesis protein FliR [Lysinibacillus fusiformis ZC1] gi|298729857|gb|EFI70402.1| flagellar biosynthesis protein FliR [Lysinibacillus fusiformis ZC1] Length = 257 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 6/236 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L++ RV + +P S IP QV++ A+ + ++ TID++ F Sbjct: 8 LTVFLLVLVRVSAFFATVPFFSYRTIPPQVKITLALVLAWMMY----YTIDVEPFAFNDD 63 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y LVM E +G + GL+ + +Q GS I +G + + + Sbjct: 64 YILLVMKEALVGLLLGLMGYIIMSAIQIAGSFIDFQMGFAIANIIDPQTGAQSPLIGQFF 123 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLS 186 ++ LL L ID HH + + SY P+ Q +F N + F I +++ Sbjct: 124 NMLALLLLLAIDGHHMILNGIYYSYQFFPMDQFPSFMNENFPQFIITTFTAVFAIAFQMA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +P + + ++++G+ K VPQ+ I+ + P IG+ L L + +++ Sbjct: 184 APVVATLFLVDLALGITAKTVPQLNIFVVGFPIKIGVSFLVLFTMMAVMIQVIQKL 239 >gi|296445188|ref|ZP_06887148.1| type III secretion system inner membrane R protein [Methylosinus trichosporium OB3b] gi|296257362|gb|EFH04429.1| type III secretion system inner membrane R protein [Methylosinus trichosporium OB3b] Length = 251 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 1/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59 MT+ E + +LF++ CR+G CIM +PG S IP+Q RL A+A +I L P L + + Sbjct: 1 MTLGVEALAATLFVLFCRIGGCIMAMPGFSSPRIPVQARLYIAIAITIALAPRLVEVVAP 60 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + + + + L++ EL +G + G L R++ L+ + TA GL + ++ Sbjct: 61 IASSASATGLAVLLVGELLVGVLIGSLARLFFFALETLATAGVTAAGLGNVLGAPMEEAE 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 ++S I + ++++D H ++ + SY IPI N+ S + +L F Sbjct: 121 PLPAMSSFIMLGATALIFLLDLHWEMVRGVFLSYTAIPIRDAFQARNMLSEYTKVLTQAF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ LR+SSP L F ++ N++ G LN++ PQ+P++F+STP LIGLG + L + F Sbjct: 181 LVALRISSPLLLFGLIVNLAFGFLNRMTPQVPVFFVSTPLLIGLGCYWFYLMADDFFAAF 240 Query: 240 SHSF 243 SF Sbjct: 241 ISSF 244 >gi|288553047|ref|YP_003424982.1| flagellar biosynthesis protein FliR [Bacillus pseudofirmus OF4] gi|288544207|gb|ADC48090.1| flagellar biosynthesis protein FliR [Bacillus pseudofirmus OF4] Length = 258 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 7/240 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L+ RV + +LP IP ++ A+ S +++ L D + A Sbjct: 7 LLPAFLLVFVRVLAFFSVLPIYGHRSIPTTHKIGLALMLSWIMIFTL----DTPEVLIDA 62 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + LV+ E+ +G GL+ + +Q G I +G + + + Sbjct: 63 VFFLLVIKEILVGLSVGLIAMILLYAVQVAGGFIDFNMGFMIANVVDPQTGAQSPLIGGY 122 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLR 184 + LL L ++ HH + + SY +P+ Q NI F+I + Sbjct: 123 LYTFALLFLLAVNGHHLLLDGIFYSYQFVPMDQVFLPFGQENIVHYIATTFNAMFIIAFQ 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ P + + ++++G++++ VPQ+ ++ + P I +G L + + + + F Sbjct: 183 MAFPIVGSLFLVDVALGMVSRAVPQMNVFVVGMPLKILVGLPLLIVYMSVFIMVVQKLFD 242 >gi|114570481|ref|YP_757161.1| flagellar biosynthetic protein FliR [Maricaulis maris MCS10] gi|114340943|gb|ABI66223.1| flagellar biosynthetic protein FliR [Maricaulis maris MCS10] Length = 250 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 116/241 (48%), Gaps = 1/241 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M ++ + L+ R+G+ +MLLPG IP++ RL FA+ F ++L P + ++ + Sbjct: 1 MIPELPALVYAAGLVFARLGAILMLLPGFGEPSIPVRFRLAFALLFCLILGPIIAPSLPV 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 A + +VM EL +G + G + R++ G VI GL + S S Sbjct: 61 MPEQPLA-MAGIVMSELIIGLMIGAVARIFMSTAAVAGQVIGMQSGLAMAQSFDPSQGAQ 119 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 +++ + + L+ L + HH + SY G + + ++ F Sbjct: 120 GALISTFLNLTFLMLLLATNTHHMLLQMAANSYQVFDPGSMPSLTDAADWALSAFIDAFR 179 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I ++L+SP + + ++F +++G+L++L+PQ I+FI+ P I +G L +++ + + Sbjct: 180 IGVQLASPLIMYGLLFYLALGVLSRLMPQAQIFFIAMPSNIMIGLFILAIALGAMSAVWL 239 Query: 241 H 241 Sbjct: 240 E 240 >gi|330828811|ref|YP_004391763.1| flagellar biosynthetic protein fliR [Aeromonas veronii B565] gi|328803947|gb|AEB49146.1| Flagellar biosynthetic protein fliR [Aeromonas veronii B565] Length = 265 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 96/238 (40%), Gaps = 2/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S+ + RV S +M++ P +VR+ A+A + ++ P L ++ F + Sbjct: 11 WLSSILWPLARVSSLLMVMAVFGSRLAPARVRMGLALAITFLIAPLLPKMPPIELFSAGS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + +L +G GL+ + G VI+ L T + + + + Sbjct: 71 FLV--LGQQLLIGIALGLMTQFLMESFVMAGQVIAMQTSLGFATLVDPMNGQSAPVVGQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + ++ S+ T+P+ + + + L + L +S Sbjct: 129 YLMLATLVFLALDGHLVMLRLVILSFETLPVSEHGLSVSSMKTLSAFLGVMYQAALVMSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + ++ N + G++ + PQ+ I+ I + G L L L+I + F + Sbjct: 189 SAIVALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLLILWLTIGGFLGHFDIMWER 246 >gi|156933430|ref|YP_001437346.1| flagellar biosynthesis protein FliR [Cronobacter sakazakii ATCC BAA-894] gi|156531684|gb|ABU76510.1| hypothetical protein ESA_01248 [Cronobacter sakazakii ATCC BAA-894] Length = 262 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS I ++V++ A+ +I L P + + + Sbjct: 12 WLTLYFWPLLRVLALISTAPILSERSISIRVKIGLALLITIALAPNIPGS---NVPIFSL 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ +G G ++ ++ G +I +GL+ T L L Sbjct: 69 EGLWLGLQQILIGVAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ +L ++ H + L ++ T+PIG E N F + F+ + L+ Sbjct: 129 IDMLAMLLFLTVNGHLWLISILADTFHTLPIGGEAINSNAFMALTRAGGLIFINGVMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G + L + +I H F F Sbjct: 189 PMITLLLSLNLALGLLNRMAPQLTVFAIGFPLTLSIGIIVLAALMPLIAPFCEHLFAEIF 248 >gi|83594154|ref|YP_427906.1| flagellar biosynthesis protein FliR [Rhodospirillum rubrum ATCC 11170] gi|83577068|gb|ABC23619.1| Flagellar biosynthesis protein FliR [Rhodospirillum rubrum ATCC 11170] Length = 253 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 128/239 (53%), Gaps = 1/239 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+G+ +++LPGLS +Y+ + +R+ A+ ++V LP + + N A+ Sbjct: 10 LFHFLLVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALPPAP-DNTAF 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ VE +G G++ + + + F G+++ + GL + + + + + + Sbjct: 69 LVLLIAVEATIGVFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQSALIAGFL 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 G + ++ ++V HH + A+V SY P GQ + G++ V +L + F + L+L++P Sbjct: 129 GEVAMVMVFVTGMHHLMIEAVVNSYDAFPPGQMPDTGDMVQLLVTILSSGFRLGLQLAAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 F+ + I+FN ++G++ +L+PQ+ + F++ P I G L ++ ++Y F F G Sbjct: 189 FIIYAIIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFLGHFERGL 247 >gi|134300233|ref|YP_001113729.1| flagellar biosynthesis protein FliR [Desulfotomaculum reducens MI-1] gi|134052933|gb|ABO50904.1| flagellar biosynthetic protein FliR [Desulfotomaculum reducens MI-1] Length = 255 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 101/238 (42%), Gaps = 1/238 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + FL+ R+ S I P ++ IP V+ ++ + + P + Sbjct: 5 VYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPA-AASFPGGL 63 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 V E+ +G GL+ ++ G ++ IG + M T ++ Sbjct: 64 WGLGLAVFSEVGVGLAIGLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSR 123 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + L+ +D HH + ALVKSY +P+ G + + + TF + +++ Sbjct: 124 FLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAMNGELTLLIIRIFTDTFALAVQIC 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +P + ++ ++++GL+ K PQ+ I+ + P I +G L + + + F + F Sbjct: 184 APVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLFD 241 >gi|330445378|ref|ZP_08309030.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489569|dbj|GAA03527.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 260 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 93/240 (38%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M + ++ ++RL A+A + ++PFL ++ A Sbjct: 11 WLANYFWPFTRISSMMMAMTFFGARFVSPKIRLYLALAITFAVMPFLPKVPQDIELLSLA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + GL+ + T G ++ L + + ++ L Sbjct: 71 GFIITGQQIIIG-VAMGLVTQFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPVLGQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L D H ++ A+V S+ T+P+G + + F L ++ Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVLSFKTLPVGTAMLGQQDYYELAGWFGHMFKAGLNMAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N+S G++ + PQ+ I+ + + + LG + IV Q+ + GF Sbjct: 190 AGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLGIVPQYEALWQVGF 249 >gi|297584053|ref|YP_003699833.1| flagellar biosynthetic protein FliR [Bacillus selenitireducens MLS10] gi|297142510|gb|ADH99267.1| flagellar biosynthetic protein FliR [Bacillus selenitireducens MLS10] Length = 259 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 103/245 (42%), Gaps = 7/245 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M I + + L++ RV + ++ LP S IP + ++ FA S +++ + D Sbjct: 1 MEIEIIEWIPAFLLVLVRVSAFMVTLPFFSYQTIPNRFKIGFAAFLSWIMI----FSGDW 56 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + L + E +G GL+ + +Q G +I +G + + Sbjct: 57 PIIELNYEFVLLAIKEALVGLTVGLIALLLLYAIQVAGGLIDLKLGFLIANVVDPQTGTQ 116 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQT 177 + S + LL L + HH + + SY IP+ Q + + T Sbjct: 117 APLIGSYLYTFALLFLLATNAHHLLLDGVYYSYEFIPLDQTFLPLGSEDYVEFIGVTMNT 176 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 F+I ++S P + + ++++G + + VPQ+ ++ I P I LG +F+ +++ + Sbjct: 177 MFIIAFQMSMPIMGSIFLVDVALGFIARTVPQVNVFVIGFPVKIFLGFVFMIVTMPVFFV 236 Query: 238 QFSHS 242 ++ Sbjct: 237 LVNNL 241 >gi|157376186|ref|YP_001474786.1| flagellar biosynthesis protein FliR [Shewanella sediminis HAW-EB3] gi|157318560|gb|ABV37658.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3] Length = 265 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 96/236 (40%), Gaps = 2/236 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S + RV S +M++ + P++VRL +MA + + P L +++ F + Sbjct: 11 TIASYMWPLFRVSSMLMVMAVFGANTTPVRVRLLLSMAITFAIAPVLPPVENIELFALSS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G + + TG +I L + + S + + Sbjct: 71 VFVTA--QQILIGVAMGFVTLLVMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + +D H + LV S+ TIPI + + F L +S Sbjct: 129 FLLLTTMIFLSVDGHLVLIRMLVVSFETIPISDQGLSITSYKLLAEWGAYMFGAALTMSI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F + Sbjct: 189 TAIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLIILWLTLTPIMEHFGEVW 244 >gi|322833208|ref|YP_004213235.1| flagellar biosynthetic protein FliR [Rahnella sp. Y9602] gi|321168409|gb|ADW74108.1| flagellar biosynthetic protein FliR [Rahnella sp. Y9602] Length = 261 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 100/239 (41%), Gaps = 3/239 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + F + R+ + I P S +P +V+L M + ++ P L + + Sbjct: 11 GWLSMYFWPLLRILALISTAPITSEKSVPNRVKLGLGMMITFLIAPSL---PPVDTPIFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L M ++ +G G+ +++ ++ G ++ +G++ T S+ L L Sbjct: 68 TPALWLAMQQIMIGTALGITMQLAFAAIRMAGEIMGLQMGISFATFYDPSNRLNTPLLAQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ +L + H + L S+ T+PI F + F + L+ Sbjct: 128 FLNLLAVLLFLSFNAHLWLISLLADSFHTLPISHNPVNAEGFMAVAKAGSIVFSGGMMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + + N+++GLLN++ PQ+ ++ I P + +G L + L + ++ H F Sbjct: 188 LPIVTLLLTLNMALGLLNRVTPQLSVFVIGFPLTLSIGILAISLMMPMLAPFSEHLFSE 246 >gi|90422632|ref|YP_531002.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisB18] gi|90104646|gb|ABD86683.1| type III secretion system inner membrane R protein [Rhodopseudomonas palustris BisB18] Length = 248 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 3/244 (1%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59 M I ++ +FLI CRVG+C+M+ PG S S IP+QVRL A++ +++L P L T+ Sbjct: 1 MIAPASISVLVVFLIFCRVGTCMMVAPGYSRSNIPVQVRLFLALSVTLMLSPLLEATVRP 60 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 L+ EL +G + GL RV+ L+ + +++AIGLNL ++ D Sbjct: 61 ALEGAAAPAILGLIWSELVVGLMIGLTARVFFAALETLATFVASAIGLNLAGTVD--DGE 118 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 L LI + + ++ + H Q+ L+ SY + G+ + V+ L F Sbjct: 119 HVPALVPLITVSATVLFFMTEQHWQLLRGLLGSYRIWLPATGVGIGDGVAQLVDHLSQAF 178 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + LR++SPF+ + ++ N++IGL NKL P IP+YFIS P+++ G L L L+ +V QF Sbjct: 179 TLALRVASPFVIYSVIVNLAIGLANKLTPSIPVYFISLPFVLFGGLLLLYLTGREMVLQF 238 Query: 240 SHSF 243 S +F Sbjct: 239 SIAF 242 >gi|225375341|ref|ZP_03752562.1| hypothetical protein ROSEINA2194_00966 [Roseburia inulinivorans DSM 16841] gi|225212830|gb|EEG95184.1| hypothetical protein ROSEINA2194_00966 [Roseburia inulinivorans DSM 16841] Length = 259 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 3/233 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ RV + + P MS +P QV++ + ++++ F + + Y+ Sbjct: 14 FILILVRVSCFVYIAPFYGMSNVPNQVKIGLSAMIALLVSGF--ADVSQVEYTGLIGYAV 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E G + GL V + F G++I IGL++ T ++ T +L Sbjct: 72 IVLKEGITGLLIGLAANVCNSIILFAGNIIDMDIGLSMATEFDPINNAQVTLTGNLYNYF 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L+ L V D HH + A V ++ IP+ GQ ++ ++ S + F+I R+ P Sbjct: 132 ILMLLVVTDMHHYILRAFVDAFTVIPVNGQVFDWEHLMRSMTTYMGDMFVIAFRIILPVF 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ N +G++ K+ PQ+ ++ + I +G + L L++ ++ + F Sbjct: 192 ACIMILNCILGIMAKVSPQMNMFAVGMQMKIMVGFVVLFLTVSLLPSVANFIF 244 >gi|300024562|ref|YP_003757173.1| type III secretion system inner membrane R protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526383|gb|ADJ24852.1| type III secretion system inner membrane R protein [Hyphomicrobium denitrificans ATCC 51888] Length = 254 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 123/246 (50%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M+ + ++ ++ CRVG+C M+LPG S IP+Q+RL A+A S+ ++P ++D + Sbjct: 1 MSELTQQTLLVPLIVFCRVGACFMVLPGFSSDRIPVQLRLFVAIAISLAIMPIVYDDVRP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 +++ E G G ++R++ L L+F ++ G S I + Sbjct: 61 VAAGPAEGLVSIIVTESLAGLFLGFIVRIFFLALEFAAIAMANLAGYGSAFSHAIEGNDP 120 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 TP + + + ++ +V D H + L SY + +G E S V+ + F Sbjct: 121 STPYSVFVTLPAVVMFFVADLHIAIIRMLHNSYAALKVGSEFAAPPNLSMIVSTFGSAFK 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + L+LS+ + + ++ N++ G LNK++PQIP YF+STP+++ G + L I+ FS Sbjct: 181 LTLQLSAALVVYSVMVNLAFGFLNKMIPQIPSYFVSTPFVVLGGLIILLQIDSGIISIFS 240 Query: 241 HSFLYG 246 + Sbjct: 241 SLVMQA 246 >gi|226944500|ref|YP_002799573.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] gi|226719427|gb|ACO78598.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] Length = 264 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 2/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + +++ F CR+ + ++ P S +P +V++ A+ S++L P L ++ F Sbjct: 10 QQWLLAFFWPFCRITAFLLATPLFGHSGVPARVKIALAVLLSVLLGPNLPPLPEVALFSW 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + ++ +G G+++RV Q G +I +GL T L+ Sbjct: 70 PGL--GITVEQMLIGLAIGMVMRVTFAAAQTAGDIIGLQMGLGFATFFSPDTGTNSMVLS 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ I LL D H L ++ ++PIG + + T F+ L L Sbjct: 128 RLLYTIALLLFLAFDGHLLELELLAGTFASLPIGLPRLDPSAWEMLARYGGTLFVSGLLL 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P + ++ N+++G+LN+ PQ+ ++ + P + LG L L + + + Sbjct: 188 ALPLVASLLIVNLAMGILNRSAPQLTVFSVGFPLSLSLGLLLLTVLMGNLGGFIQGLLRA 247 Query: 246 GF 247 G Sbjct: 248 GL 249 >gi|323527704|ref|YP_004229857.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1001] gi|323384706|gb|ADX56797.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1001] Length = 260 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P L +P++V++ + +I++ P L + F Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPLRVKIGLSAFVTIIVAPTLGALPQVTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G+ +++ + TG + +GL T S + L+S Sbjct: 71 GVW--IIVNQFLIGIALGVTMQIVFQAISATGDFVGLGMGLGFATFFDAQASSSSQVLSS 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +L VID H Q+ AL+ S+ ++P+ + + + N T F L LS Sbjct: 129 YMYTIAMLVFLVIDGHLQMISALLASFNSLPVSANILGSPGWRTLANFGSTIFSAGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P + +G L L L I ++ F+ F G Sbjct: 189 LPVVAALLITNLALGILNRAAPQIGVFQIGFPLTMLIGLLLLQLMIPNMIPFFARLFAVG 248 >gi|269836607|ref|YP_003318835.1| flagellar biosynthetic protein FliR [Sphaerobacter thermophilus DSM 20745] gi|269785870|gb|ACZ38013.1| flagellar biosynthetic protein FliR [Sphaerobacter thermophilus DSM 20745] Length = 260 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 2/232 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+V R+G+ +M +PG + +P +++ A+A S+VL+PF + + A Sbjct: 12 IAVFLLMVTRIGTMLMFMPGFAGRSVPPAIKVLAALALSLVLVPFTRPGTE--TLTDPAS 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ + E LG + G I V ++ S++ IGLNL S L TPLN+ Sbjct: 70 FTVGLAREFLLGLLMGFGIAVVFGAIEMAASLVGAQIGLNLSGVFNPSLDLQGTPLNTFY 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L + + HH V AL +S+ T+PIG N ++ + + F+ LR+ P Sbjct: 130 LVAAALVFFSANGHHLVLMALHRSFQTVPIGSAALADNAGTAIIALASLMFVDALRIGLP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + + +G+LN++VPQ+ ++F+ P I G L L++ ++ + Sbjct: 190 VAGTLLAVDACLGVLNRMVPQMNVFFVGLPVKIFAGFAVLLLTLPFLIRVLA 241 >gi|294852959|ref|ZP_06793631.1| flagellar biosynthetic protein FliR [Brucella sp. NVSL 07-0026] gi|294818614|gb|EFG35614.1| flagellar biosynthetic protein FliR [Brucella sp. NVSL 07-0026] Length = 245 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223 LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGG 227 >gi|1066865|gb|AAB81321.1| fliR [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 264 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLRVRALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAAL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 72 W---LAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|121608109|ref|YP_995916.1| flagellar biosynthetic protein FliR [Verminephrobacter eiseniae EF01-2] gi|121552749|gb|ABM56898.1| flagellar biosynthetic protein FliR [Verminephrobacter eiseniae EF01-2] Length = 256 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + + P S +P++ ++ A ++ L D + VN Sbjct: 10 AWLSPVLWPFLRVLALFSVAPVFSARQLPLRAKIGLAFLVALCAQGVLTDQPVIS--VNG 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 V ++ +G G +R+ ++ G +I +GLN + + + Sbjct: 68 REALGAVAQQVAVGLAIGFALRLVFTAVELAGEIIGLQMGLNFASFFDPVAHAQISAVTR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + LL V + H V A+V S+ P+ + F L ++ Sbjct: 128 FFDNLVLLLFIVGNGHLLVLMAVVDSFDRFPVDGNFLQALGQMRLHTLGSAIFSSALWIA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++ Sbjct: 188 LPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGLLGITATLPML 236 >gi|329849683|ref|ZP_08264529.1| flagellar biosynthetic protein FliR [Asticcacaulis biprosthecum C19] gi|328841594|gb|EGF91164.1| flagellar biosynthetic protein FliR [Asticcacaulis biprosthecum C19] Length = 273 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 121/237 (51%), Gaps = 1/237 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + ++ LI+ R+ S IML+PGL +P ++R+ A+ ++V+ P + +T+ + Sbjct: 28 LWAVGLILLRLASMIMLMPGLGDQAVPARLRIGLALMLALVITPIVGNTLPPLP-NSLGD 86 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + E+ +G + G L+RV L G ++S L+ + + + T L + + Sbjct: 87 MLGIALHEIIIGLMIGTLMRVLIFALVIAGEIMSLQTTLSFAQTANPAQAQPSTSLGTFL 146 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G++ ++ + HH A+V SY +++ G+ + + + TF++ L++S+P Sbjct: 147 AMLGMVLIYATNLHHLFIRAMVDSYQVFAPTRDVMVGDATTLMLQTVTKTFLLALQMSAP 206 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + F ++FNI+ G + +++P P++F +TP + G + L + F + Sbjct: 207 LIAFALIFNIATGFIGRMMPNFPVFFAATPVSVLAGLSIMALGLGATGMVFIEHYEE 263 >gi|313200555|ref|YP_004039213.1| flagellar biosynthetic protein flir [Methylovorus sp. MP688] gi|312439871|gb|ADQ83977.1| flagellar biosynthetic protein FliR [Methylovorus sp. MP688] Length = 256 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 2/237 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ L + R+ + I + P LS I +V++ A+ ++ LLP L L F Sbjct: 10 QSWIVLLLWPMTRILAMIAVAPVLSHRSISARVKISMALMMTLALLPSLPQPPLLDIFSW 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + ++ +G G +R+ ++ G +I +GL ++ Sbjct: 70 KGILV--LAQQMVIGFAIGFSMRIVFAAVEMAGQMIGMTMGLGFAMFYDPQTQGQSNAIS 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ L +D H + A+++S+ P+ E G F N F L + Sbjct: 128 QFMVLLTTLIFLSLDGHLLMISAVMESFANFPLSAEWQGGLDFMKMANWGGKIFSAGLLI 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 S P + ++ N+++G+L + PQ+ ++ I P I +G + + L + I+ Sbjct: 188 SLPAIAALLITNMALGILTRTAPQLNLFGIGFPVTIAIGYVVVALVLPGILQPILQL 244 >gi|251797426|ref|YP_003012157.1| flagellar biosynthetic protein FliR [Paenibacillus sp. JDR-2] gi|247545052|gb|ACT02071.1| flagellar biosynthetic protein FliR [Paenibacillus sp. JDR-2] Length = 264 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 104/240 (43%), Gaps = 6/240 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI CR+ S ++ P +M +P ++ S+++ + + Q A Y Sbjct: 11 FLLIFCRMTSFFVVAPLFNMRGVPSTFKIGLGFFLSLIVF--MTYGLKEQTVPMDAEYIL 68 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E+ +G + G ++ ++ +Q G+++ IG + + ++ L + ++ Sbjct: 69 YIFREVLIGLLMGYIVYLFMTVVQTAGALMDMQIGFAMSNVIDPMTGVSAPLLGNFKYML 128 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIMLRLSS 187 ++ ++ HH + L+ SY +P+ EL G+I + F++ +++++ Sbjct: 129 LIMVFLAVNGHHYLLTGLMDSYKWMPLSNELFSRIYDGSITDFLSRAVGNAFLLAMQVAA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++ +G L K PQ ++ I P + LG L L + I F F F Sbjct: 189 PLVIAMFLTDVGLGFLAKTAPQYNVFVIGIPLKLLLGLGLLILVLPGISAIFERLFAIMF 248 >gi|204931027|ref|ZP_03221853.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320071|gb|EDZ05276.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 264 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAAL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 72 W---LAIQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|205352325|ref|YP_002226126.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272106|emb|CAR36959.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627375|gb|EGE33718.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 264 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAAL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 72 W---LAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAILLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|198244152|ref|YP_002215105.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938668|gb|ACH76001.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 264 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAAL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 72 W---LTMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|253998480|ref|YP_003050543.1| flagellar biosynthetic protein FliR [Methylovorus sp. SIP3-4] gi|253985159|gb|ACT50016.1| flagellar biosynthetic protein FliR [Methylovorus sp. SIP3-4] Length = 256 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 100/237 (42%), Gaps = 2/237 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ L + R+ + I + P LS I +V++ A+ ++ LLP L L F Sbjct: 10 QSWIVLLLWPMTRILAMIAVAPVLSHRSISARVKISMALMMTLALLPSLPQPPLLDIFSW 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 R + ++ +G G +R+ ++ G +I +GL ++ Sbjct: 70 RGMLV--LAQQMVIGFAIGFSMRIVFAAVEMAGQMIGMTMGLGFAMFYDPQTQGQSNAIS 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ L +D H + A+++S+ P+ E G F N F L + Sbjct: 128 QFMVLLTTLIFLSLDGHLLMISAVMESFANFPLSAEWQGGLDFMKMANWGGKIFSAGLLI 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 S P + ++ N+++G+L + PQ+ ++ I P I +G + + L + I+ Sbjct: 188 SLPAIAALLITNMALGILTRTAPQLNLFGIGFPVTIAIGYVVVALVLPGILQPILQL 244 >gi|16765319|ref|NP_460934.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413106|ref|YP_150181.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180556|ref|YP_216973.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613450|ref|YP_001587415.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167993556|ref|ZP_02574650.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234154|ref|ZP_02659212.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239221|ref|ZP_02664279.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244832|ref|ZP_02669764.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259732|ref|ZP_02681705.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462477|ref|ZP_02696408.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823024|ref|ZP_02835024.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444159|ref|YP_002041246.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449212|ref|YP_002046032.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472341|ref|ZP_03078325.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736717|ref|YP_002115015.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197265429|ref|ZP_03165503.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362032|ref|YP_002141669.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207856506|ref|YP_002243157.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583520|ref|YP_002637318.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912446|ref|ZP_04656283.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141401|sp|P54702|FLIR_SALTY RecName: Full=Flagellar biosynthetic protein fliR gi|16420516|gb|AAL20893.1| putative flagellar biosynthetic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127363|gb|AAV76869.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128189|gb|AAX65892.1| putative flagellar biosynthetic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362814|gb|ABX66582.1| hypothetical protein SPAB_01167 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402822|gb|ACF63044.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407516|gb|ACF67735.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458705|gb|EDX47544.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712219|gb|ACF91440.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634515|gb|EDX52867.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093509|emb|CAR58970.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197243684|gb|EDY26304.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288058|gb|EDY27445.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205328394|gb|EDZ15158.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331896|gb|EDZ18660.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336365|gb|EDZ23129.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340657|gb|EDZ27421.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350805|gb|EDZ37436.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708309|emb|CAR32612.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468047|gb|ACN45877.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247147|emb|CBG24970.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993970|gb|ACY88855.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158495|emb|CBW18005.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912971|dbj|BAJ36945.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224626|gb|EFX49689.1| Flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616974|gb|EFY13882.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618213|gb|EFY15105.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625884|gb|EFY22703.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626336|gb|EFY23146.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632751|gb|EFY29496.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639093|gb|EFY35786.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640409|gb|EFY37065.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647230|gb|EFY43729.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649885|gb|EFY46307.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655530|gb|EFY51838.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660308|gb|EFY56546.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662989|gb|EFY59196.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668174|gb|EFY64333.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674067|gb|EFY70161.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675581|gb|EFY71655.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683008|gb|EFY79024.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686702|gb|EFY82680.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715032|gb|EFZ06603.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130260|gb|ADX17690.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195410|gb|EFZ80590.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198062|gb|EFZ83179.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204466|gb|EFZ89472.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207556|gb|EFZ92504.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211005|gb|EFZ95865.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217541|gb|EGA02260.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220726|gb|EGA05170.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226687|gb|EGA10884.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231563|gb|EGA15676.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236006|gb|EGA20085.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240576|gb|EGA24619.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245468|gb|EGA29468.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247586|gb|EGA31537.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253951|gb|EGA37775.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255521|gb|EGA39282.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262119|gb|EGA45682.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266242|gb|EGA49732.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270649|gb|EGA54090.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332988870|gb|AEF07853.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 264 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|328543169|ref|YP_004303278.1| flagellar biosynthetic protein fliR [polymorphum gilvum SL003B-26A1] gi|326412915|gb|ADZ69978.1| Flagellar biosynthetic protein fliR [Polymorphum gilvum SL003B-26A1] Length = 257 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I LI R+G+ +MLLP L S IPM++RL A+A ++V P + Sbjct: 11 IAAVFMLIFARLGTMLMLLPALGESSIPMRLRLTVALALTLVFYPIGARAYPAGLVSDPG 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NS 126 L+ EL +G GL R+ T LQ G +I+ L ++ S + L + Sbjct: 71 GLGILLAGELAIGFGIGLCARMITSVLQIAGMIIANQSSLASALGTDVTMSGQQGALVGN 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+G+ ++V D H + AL S+ P G+ L + + ++ F I +R+S Sbjct: 131 FLAILGVTLVFVTDTHFLIIAALHDSFTLFPPGEWLPVADFATLATQIVAGMFSIAVRMS 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 +PFL +VF +GLLNKL+PQ+ I+FI+ P I LG L + + ++ + F Sbjct: 191 APFLVVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIALGLGLLLVLLATLMTWYLGHFEEA 250 >gi|197250835|ref|YP_002146042.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200389554|ref|ZP_03216165.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|197214538|gb|ACH51935.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199601999|gb|EDZ00545.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 264 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLRILALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|241763643|ref|ZP_04761693.1| flagellar biosynthetic protein FliR [Acidovorax delafieldii 2AN] gi|241367118|gb|EER61484.1| flagellar biosynthetic protein FliR [Acidovorax delafieldii 2AN] Length = 256 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 97/229 (42%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + + P SM IPM+V++ A ++ L + + VN Sbjct: 11 AWLSPILWPFLRVLAVFTVAPVFSMRAIPMRVKVGLAFLVALCAQAVLTNQPVIS--VNG 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 V ++ +G G +R+ ++ G +I +GLN + + + + + Sbjct: 69 REALGAVAQQVTVGLAIGFAVRLVFSAVELAGELIGLQMGLNFASFFDPASNAQVSAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G + L VI+ H V A+VKS+ + P + + F L ++ Sbjct: 129 FFGHMATLLFVVINGHLMVLMAVVKSFDSFPADGSFLQALGQMHLHELGASLFSSALWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + N+++G+++++ PQ+ IY + P + +G L + ++ ++ Sbjct: 189 LPMIALLTFVNLTLGIISRVAPQMNIYAVGFPVTLTVGLLGIAATLPML 237 >gi|317129191|ref|YP_004095473.1| flagellar biosynthetic protein FliR [Bacillus cellulosilyticus DSM 2522] gi|315474139|gb|ADU30742.1| flagellar biosynthetic protein FliR [Bacillus cellulosilyticus DSM 2522] Length = 259 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 99/238 (41%), Gaps = 7/238 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L++ RV + ++ LP S IP +++ A+ S ++ D Sbjct: 7 WLPAFMLVLVRVSAFLITLPFFSYQNIPAPLKIGLALFISWIMF----FAGDWPALEINY 62 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ L++ E +G GL+ + +Q G +I +GL + + S Sbjct: 63 HFYLLIIKEALVGLTVGLIAMILLYAIQVAGGIIDYKMGLMIANVIDPQTGAQSPLTGSY 122 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLR 184 + +L L D HH + + SY IP+ Q I V T F+I + Sbjct: 123 LYTFSILFLLATDAHHLLLDGVFYSYQFIPMDQLFIPFGNEAILDHVVVTFSTMFLIAFQ 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ P + + ++++G++++ VPQI ++ + P + +G + L L + + Sbjct: 183 MAMPIVGSIFLVDLALGMVSRAVPQINVFVVGMPLKVLVGFILLLLVMAPFFMVVNQL 240 >gi|238025695|ref|YP_002909926.1| flagellar biosynthetic protein FliR [Burkholderia glumae BGR1] gi|237874889|gb|ACR27222.1| Flagellar biosynthetic protein FliR [Burkholderia glumae BGR1] Length = 259 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 108/241 (44%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+ + + P + + +P++V++ + +I + P L F Sbjct: 11 VWLTAFLWPFVRILALVAAAPLIGNAAVPVRVKIGLSALTAIAVAPALGPLPQATVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G ++++ ++ G I +GL T + Sbjct: 71 GIW--ILVNQFLIGVSMGFVMQIVFAVVEAAGDYIGLQMGLGFATFFDPHAGT-TPMMGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ +LA D H Q+ ALV+S+ ++PI +L + + F + L L+ Sbjct: 128 ILNAFAMLAFVAFDGHLQLIAALVESFASVPISADLLHPAGWQTLAGAGINVFAMGLLLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI I+ I P L+ +G L + L + ++ FS F G Sbjct: 188 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVLMLVGLLLVQLMVPNMMPFFSRLFDNG 247 Query: 247 F 247 + Sbjct: 248 Y 248 >gi|163794130|ref|ZP_02188103.1| flagellar biosynthetic protein FliR [alpha proteobacterium BAL199] gi|159180744|gb|EDP65263.1| flagellar biosynthetic protein FliR [alpha proteobacterium BAL199] Length = 255 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 126/231 (54%), Gaps = 1/231 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + L+ R + ++LLPG+ +IP++VRL FA+A ++ + P + + + + A Sbjct: 11 IFQIMLVFARTSAVLLLLPGIGEVFIPVRVRLLFAVALALAVAPVIAPQLPPEP-TSAAG 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E+ +G GL+ R+ L L G VIS + GL T S S + + ++ Sbjct: 70 LLTLVVGEVLIGLYFGLVARILWLTLDTAGRVISFSTGLASATVFNPSLSEQGSAIGLVL 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G++ L++ D HH V A+V+SY G EL G+ + ++ +F + ++LS+P Sbjct: 130 TLLGIMMLFIADLHHMVIRAVVESYAVFRPGGELMIGDFSEAITELVSGSFKVAVQLSAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 F F ++F +++G+L +L+PQ+ I+FI P I LG + ++ F Sbjct: 190 FFVFGLLFFVTLGVLARLMPQLQIFFIGLPAQIYLGLFVWVTILGALMSAF 240 >gi|167645348|ref|YP_001683011.1| flagellar biosynthesis protein FliR [Caulobacter sp. K31] gi|167347778|gb|ABZ70513.1| flagellar biosynthetic protein FliR [Caulobacter sp. K31] Length = 251 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 127/230 (55%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ R+G+ +ML+PG+ + +P ++RL FA+ +I+L P + +I A + V Sbjct: 15 LVFARIGAMVMLMPGVGEAVVPPRIRLSFAVLMAILLAPLVSSSITTVPSSVGAV-AGAV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G++++++ L G +IS L+ + + + + T + + + ++GL Sbjct: 74 IHEVLIGLMIGMVLKLFVSSLTTAGEIISIQTTLSFAQTANPAGAPSSTAVATFLSMLGL 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + V D HH A+VKSY P + + + + V + +F + ++L++P L F Sbjct: 134 VLIMVTDLHHLFIGAMVKSYDIFPFSRAIPVNDAATLAVRTVADSFKLGVQLAAPVLVFS 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 IVFN++ GL+ +++P I+F+++P + LG L LS+ I ++ + Sbjct: 194 IVFNLATGLVGRVMPSFQIFFVTSPLSVILGLSLLGLSLGGIAMVWTDRY 243 >gi|240145486|ref|ZP_04744087.1| flagellar biosynthetic protein FliR [Roseburia intestinalis L1-82] gi|257202301|gb|EEV00586.1| flagellar biosynthetic protein FliR [Roseburia intestinalis L1-82] Length = 259 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 3/233 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L LI+ R+ + + P P Q ++ F+ ++++ F+ T + Y+ Sbjct: 14 LILILVRISCFVYIAPFFGTKNAPSQAKIGFSFFVALLVYGFVDKT--AIEYTGLIGYAI 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E G + G + + F G++I IGL++ T + + T +L Sbjct: 72 IVLKEGITGLLIGFAANICNSIILFAGNIIDMDIGLSMVTEFDPTMNTQVTITGNLYNYF 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 LL L D HH + A+V S+ IPI GQ N+ ++ S + F+I R+ P Sbjct: 132 ILLLLIATDMHHVILQAVVDSFTVIPINGQFFNWDSLAGSITQYMTDLFVIGFRIFLPIF 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ N +G+L K+ PQ+ ++ + I +G L L+I ++ S F Sbjct: 192 ACMMILNCILGILAKVAPQMNMFAVGMQMKILVGFGVLFLTISLLPGIASFIF 244 >gi|76874664|emb|CAI85885.1| flagellar biosynthetic protein [Pseudoalteromonas haloplanktis TAC125] Length = 231 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 2/219 (0%) Query: 26 LPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGL 85 + GL +P ++++ A+ + V +P L F +V+ ++ +G G Sbjct: 1 MAGLGAKNVPTRIKMGLAIVVTFVAVPMLPPATFTNLFS--FEMILVVIQQMLIGIAIGF 58 Query: 86 LIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQV 145 + G +++ GL + + S+ L+ + I+ L +V + H + Sbjct: 59 ASTLLLNTFVLAGQILAMQTGLGFASVVDPSNGLSVPAVGQFYLILATLLFFVFNGHLMM 118 Query: 146 FYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNK 205 +V S+ +PI + + V F L LS L +V N+S G++ + Sbjct: 119 IQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLSLAPLTAMLVINMSFGIMTR 178 Query: 206 LVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PQ+ I+ I P+ + G + + ++ V QF +L Sbjct: 179 AAPQLNIFSIGFPFTLVAGLIIIWATLGNFVSQFEFQWL 217 >gi|229544410|ref|ZP_04433468.1| flagellar biosynthetic protein FliR [Bacillus coagulans 36D1] gi|229324895|gb|EEN90572.1| flagellar biosynthetic protein FliR [Bacillus coagulans 36D1] Length = 259 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 100/239 (41%), Gaps = 7/239 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ RV + +++P S +P + R+ S+ + TI + F Y Sbjct: 11 FLLVFIRVTTFFIMMPLFSHRSVPARFRIGLGFFLSV----LVTYTIHAKPFTMDGAYFM 66 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E +G + G + +Q G+ I G ++ + + Sbjct: 67 LMIKEALVGLLLGFVAYFILSAVQLAGTFIDFQAGFSMANVIDPQSGAQTPLTGEYLYTF 126 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE---LNFGNIFSSFVNMLQTTFMIMLRLSSP 188 LL L ++ HH + + SY IP+ Q L N+ +L F++ ++S+P Sbjct: 127 ALLLLLSLNGHHLLLDGIYYSYSFIPLDQAWVHLGSFNLAKYLATLLARVFLVAFQMSAP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + +I++G++ + VPQ+ I+ + P I + + L +++ I H F + F Sbjct: 187 VVAVLFLTDIALGIIARTVPQLNIFVVGFPVKIAVSLIALAVAMGTIYIAVEHLFEWMF 245 >gi|237731998|ref|ZP_04562479.1| flagellar biosynthesis protein FliR [Citrobacter sp. 30_2] gi|226907537|gb|EEH93455.1| flagellar biosynthesis protein FliR [Citrobacter sp. 30_2] Length = 261 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 100/240 (41%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P + + + Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERAIPKRVKLGLGLMITVVIAPSIPA---VDVPIFSV 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 M ++ +G G ++ ++ G +I +GL+ T L L L Sbjct: 69 GALWQAMQQILIGIALGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 IDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGGNPVNSNAFLALARAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G + + +I F F Sbjct: 189 PVMTLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPLIAPFCERLFSEIF 248 >gi|170744552|ref|YP_001773207.1| flagellar biosynthesis protein FliR [Methylobacterium sp. 4-46] gi|168198826|gb|ACA20773.1| putative flagellar biosynthetic protein [Methylobacterium sp. 4-46] Length = 256 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 1/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV-NR 66 + + +FL+ CR+G C++++PG+S + IP+QVRL A++ + L P + + Sbjct: 13 LFLGIFLMFCRIGGCLLVVPGVSSARIPVQVRLFLALSVTFALSPLILPLFRGRLAAQEP 72 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A ++ E G + GLL RV+ L+ + ++ A+G + + + L S Sbjct: 73 AVTFLWILSESLTGFLIGLLGRVFLFVLETVMTAVTMAVGFGTIPGTPMEGNEPQGALVS 132 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ + L+ H ++F LV SY +P G+ L V+ + + F++ LR++ Sbjct: 133 LVMVAATALLFSAGLHWELFRGLVDSYARLPPGEGLGSQAALVQIVDQITSVFVLGLRIT 192 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 SPF+ + IV N+++G NKL P IP+YFI+TP+++ G L L L ++ QF S+ Sbjct: 193 SPFIVYSIVVNLAVGFANKLTPTIPVYFIATPFVMVGGILMLYLISGEVLMQFLGSY 249 >gi|226313052|ref|YP_002772946.1| flagellar biosynthesis protein FliR [Brevibacillus brevis NBRC 100599] gi|226096000|dbj|BAH44442.1| flagellar biosynthetic protein FliR [Brevibacillus brevis NBRC 100599] Length = 260 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 97/239 (40%), Gaps = 6/239 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ + + P S+ +P Q ++ A +++ L ++ + Sbjct: 11 FMLVFVRMSAFFVTAPFFSIRGVPNQFKIALAFIIAVISFQSLPVQGEIP---MDLTFVM 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V+ E +G + G + + + +Q G ++ +GL + + + I+ Sbjct: 68 YVIKEALVGVILGYICEMMFIAIQVAGGLMDMQMGLAMANVIDPKTGAYIPVTGNFKNIL 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIG---QELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +L + ID HH + ++ SY IP+ N+ + V T F +++P Sbjct: 128 AVLYFFSIDGHHMLIRGVISSYQVIPVDIMWAAFGSENVMMTAVKTFLTMFTSAFMIAAP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++S+G++ K VPQ I+ + P + G L L + + + + F F Sbjct: 188 IVVALFLVDLSLGIIAKSVPQFNIFVVGLPIKLLAGFLLLIVVMPAFLLTLNGLFGNMF 246 >gi|109899340|ref|YP_662595.1| flagellar biosynthesis protein FliR [Pseudoalteromonas atlantica T6c] gi|109701621|gb|ABG41541.1| flagellar biosynthetic protein FliR [Pseudoalteromonas atlantica T6c] Length = 259 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 93/235 (39%), Gaps = 2/235 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + L R+ + + GLS +P VR + + ++LP + ++ Sbjct: 15 MLLPFMRISGMLATMVGLSAKTVPTTVRALLTLFITFIILPVIPPVPVVEILS--VSTFV 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ +L +G G + + G V++ GL + + + + + I+ Sbjct: 73 LVIQQLIIGISLGFISTMVLNTFVLAGQVVAMQTGLGFASIVDPVNGINVPAVGQFYLIL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L W +D H + +V S+ P+G+ F + F+ + LS + Sbjct: 133 ATLLFWALDGHLAMIRMVVMSFTAFPVGEAWLQPEQFREIAHWAGWMFISAVTLSLAPIV 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 ++ N++ G++ K PQ+ I+ + +G + + ++++ Y F + Sbjct: 193 SLLIVNLAFGVMTKAAPQLNIFSLGFSIAQIMGLVIIWITMDNFTYHFEVQWDRA 247 >gi|327394277|dbj|BAK11699.1| flagellar biosynthetic protein FliR [Pantoea ananatis AJ13355] Length = 261 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + + P LS + +V++ A + +L+P L + + Sbjct: 12 WVSQFFWPLVRILALLATAPVLSEKAVSKRVKIGLAAMITWILIPNL---PPVNVTLFSP 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G G ++ ++ G +I +GL+ T + L L Sbjct: 69 AGFMLLIQQMLIGIAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPASRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + L S+ T+PIG E N F + V F+ + L+ Sbjct: 129 LDMLAMLLFLTFNGHLWLISLLSDSFHTLPIGGEPLQANAFMALVKSGSMIFLNGMMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+ +GLLN+L PQ+ I+ I P + +G L + L + ++ H F F Sbjct: 189 PLIVLLLTINMVLGLLNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFGEIF 248 >gi|16760925|ref|NP_456542.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141383|ref|NP_804725.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213025463|ref|ZP_03339910.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163374|ref|ZP_03349084.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417180|ref|ZP_03350324.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424993|ref|ZP_03357743.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612733|ref|ZP_03370559.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650741|ref|ZP_03380794.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855266|ref|ZP_03383506.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25346403|pir||AF0753 flagellar biosynthetic protein FliR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503222|emb|CAD05729.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Typhi] gi|29137010|gb|AAO68574.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 264 Score = 142 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|291536021|emb|CBL09133.1| flagellar biosynthetic protein FliR [Roseburia intestinalis M50/1] Length = 259 Score = 142 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 3/233 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L LI+ R+ + + P P Q ++ F+ ++++ F+ T + Y+ Sbjct: 14 LILILVRISCFVYIAPFFGTKNAPSQAKIGFSFFVALLVYGFVDKT--AIEYTGLIGYAI 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E G + G + + F G++I IGL++ T + + T +L Sbjct: 72 IVLKEGITGLLIGFAANICNSIILFAGNIIDMDIGLSMVTEFDPTMNTQVTITGNLYNYF 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 LL L D HH + A+V S+ +PI GQ N+ ++ S + F+I R+ P Sbjct: 132 ILLLLIATDMHHVILQAVVDSFTVVPINGQIFNWDSLAGSITQYMTDLFVIGFRIFLPIF 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ N +G+L K+ PQ+ ++ + I +G L L+I ++ S F Sbjct: 192 ACMMILNCILGILAKVAPQMNMFAVGMQMKILVGFGVLFLTISLLPGIASFIF 244 >gi|160896099|ref|YP_001561681.1| flagellar biosynthetic protein FliR [Delftia acidovorans SPH-1] gi|160361683|gb|ABX33296.1| flagellar biosynthetic protein FliR [Delftia acidovorans SPH-1] Length = 256 Score = 142 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + + P S IPM++++ A ++ P L D + +N Sbjct: 11 AWLSPVLWPFLRVLAMFSVAPVFSQRVIPMRLKIGLAFLVAVCAQPVLGDQPVIG--INS 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ ++ +G G +R+ ++ G V+ +GLN + + + + + Sbjct: 69 PQALGTLIQQVGVGLAVGFAVRLVFAAVEVAGEVVGLQMGLNFASFFDPTTNAQLSAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L VI+ H V A++KSY P+ M F ++ Sbjct: 129 FMVQISTLLFIVINGHLLVLMAVLKSYEAFPVDGSFLQAINQMRLHEMGAAVFASAFWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+ +G+++++ PQ+ IY + P + +G L ++ ++ G Sbjct: 189 LPMVAMLLFVNLVLGIISRVAPQMNIYAVGFPVTLTVGLTGLMATLPLLEQPLVALLQRG 248 >gi|254491753|ref|ZP_05104932.1| flagellar biosynthetic protein FliR [Methylophaga thiooxidans DMS010] gi|224463231|gb|EEF79501.1| flagellar biosynthetic protein FliR [Methylophaga thiooxydans DMS010] Length = 260 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 102/235 (43%), Gaps = 1/235 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 I+ + R+ + +M+ P S ++I + R+ A+A SIV++P + + Q Sbjct: 10 GILGAYLWPFFRIAAMVMVAPIFSSNFISQRSRILMAVAISIVIVPNIPVQVP-QVDALS 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A ++ ++ +G G ++++ G +I+ +GL + + + + ++ Sbjct: 69 AEGLLIIAHQILIGACMGFMLQLLFNAFIVAGQIIAMQMGLGFASMVDPQNGVMVPVISQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + L I+ H + + +S+ T+PI F V + + ++ Sbjct: 129 FYLVFITLIFVSINGHLILIQVMSESFVTLPIAATGLSPVDFRDIVAQASWMYAAGVIIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ N++ G+L++ PQI + I P I LG + + +++ + + Sbjct: 189 LPAIGSLMMVNLAFGILSRAAPQISPFSIGFPMTIILGFVVMLITLPNVAGHLVN 243 >gi|312879605|ref|ZP_07739405.1| flagellar biosynthetic protein FliR [Aminomonas paucivorans DSM 12260] gi|310782896|gb|EFQ23294.1| flagellar biosynthetic protein FliR [Aminomonas paucivorans DSM 12260] Length = 259 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R + P P+ VR AM ++V+ P + + F + + E Sbjct: 19 RFLGLLFSNPVFLAPAWPLPVRFWTAMLLAVVVTPGVGLSYPGPLFAHWGFLFVAAGREF 78 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G GL + LQ +G T +GL + T + + ++G+ + Sbjct: 79 LIGVTLGLFAGLPLYALQMSGFFEGTQMGLGIATFFDPMSETQVALIGQMKYLLGVWFFF 138 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + H + AL +S IP+ + G + LQ F++ L+++ P ++ + Sbjct: 139 HWNGHLLLIEALTESLRLIPLAKGTWGGGAAIPWGIWLQKLFVLSLQMALPLFGALLLAD 198 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + +G + + VPQ+ ++ + P IGLG L + + V F Sbjct: 199 VGMGFVARTVPQMNLFVLGIPLKIGLGLFILLAVLPLTVDLF 240 >gi|323698076|ref|ZP_08109988.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. ND132] gi|323458008|gb|EGB13873.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans ND132] Length = 262 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 2/228 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++S FL + R+ + LLP IP V+ + S+ L P L + Sbjct: 11 LLSYFLTLFRISVVLFLLPFFGGQSIPKVVKAALVLVLSMALWPQL--SFPGSLMPTGWN 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + + EL LG + G+L+ +Q G +I +G + + + + Sbjct: 69 IAIMFLGELVLGLILGMLVNFLFAAVQLGGQIIGFQMGFAMVNVVDPITGTSNAVSAHFL 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L V++ H + A+ S+ IP G L + + + F + +++++P Sbjct: 129 YMCTMLTFLVLNGHLYLLKAVGMSFQYIPPGTLLLQPELANDIFHFSNLMFTLAIKIAAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + + ++S+ L+++ PQ+ + + P I +G FL I+ Sbjct: 189 VMAALFLVDLSLALISRAAPQMHVLILGFPIKITVGFFFLGFIFSIMA 236 >gi|94500292|ref|ZP_01306825.1| flagellar biosynthesis protein [Oceanobacter sp. RED65] gi|94427591|gb|EAT12568.1| flagellar biosynthesis protein [Oceanobacter sp. RED65] Length = 262 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 2/241 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + R M+LP + +VRL A SI++ P L + Sbjct: 19 WVSRYLWPFFRFAGFFMVLPLFGTRLVTARVRLFLAFFTSILVTPLLPPMPVIDAVS--V 76 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ ++ +G G ++ + G +I+ GL + + ++ + + Sbjct: 77 QTMVIIAQQILIGIALGFVVEILMQIFILCGQLIAMQTGLGMAMMVDPTNGVNVAVVAQW 136 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I L ++ H L S+ TIP+G+ N+ S V + F + L+ Sbjct: 137 FLIFANLLFITLNGHLVAIEILADSFFTIPVGEGTISTNVMWSIVELAHWMFSAAIVLAL 196 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + +V NI+ G++ +L PQ+ I+ + P + LG + L ++ +F F Sbjct: 197 PAITSMLVVNIAFGVMARLAPQLNIFAVGFPVTMLLGLIVLWIAFSGFGAEFGRLLTELF 256 Query: 248 F 248 + Sbjct: 257 Y 257 >gi|95929866|ref|ZP_01312607.1| flagellar biosynthetic protein FliR [Desulfuromonas acetoxidans DSM 684] gi|95134162|gb|EAT15820.1| flagellar biosynthetic protein FliR [Desulfuromonas acetoxidans DSM 684] Length = 260 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 102/231 (44%), Gaps = 1/231 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + + RV + + +P +P + ++ A+ + ++ P + + +F L Sbjct: 15 LICLARVAAILGSMPVFGSGQVPARAKVILALFMTFLIFPGVEPLLPSYSF-EPLPLMLL 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E LG + G + R+ ++F G+++ +G + + ++ + Sbjct: 74 IANEALLGIMMGFIARLIFTAVEFGGTIVGYQMGFAAANVYDPQNQRQVSLISQFQNVFA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L +D HH A+V SY +P G + + F++ +R S+P L Sbjct: 134 ILVFLALDVHHLFIEAMVDSYRQLPPGLLDFSSEAVPFIMELTGHMFVLAIRFSAPILAV 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ + +G+L ++ PQ+ ++ +S P IG+ + + L++ ++V + F Sbjct: 194 LLLSGLVLGILARVFPQLNVFLLSFPINIGMAFIIIGLTMNMVVAMLNREF 244 >gi|309388836|gb|ADO76716.1| flagellar biosynthetic protein FliR [Halanaerobium praevalens DSM 2228] Length = 261 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 90/236 (38%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + FLI+ R ++L P S I + ++ A+ + P + N Sbjct: 11 LYFFFLILSRYLGMMLLTPFFSSQVIFYRAKILIALTLAAFSYPLVLSIYQPLAPANNLS 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ E +G GL + + +Q G +I +G + + + L Sbjct: 71 LIIEIISEFSIGLFMGLAVFLVFSAIQLGGQIIDMRMGFRIANVVDPFSGANSPVIGQLK 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I L ++ H + L S+ IP G+ ++ F F++ ++++ P Sbjct: 131 NIFVTLIFLALNGHLYLIKHLYNSFKIIPPGRVKFSNQLWQYFFRRSADMFVLAIKIALP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +I + L + VPQ+ ++ I P I G + L + + ++ + ++ + Sbjct: 191 IAGAIFFIDIILAFLARSVPQMNLFVIGLPIKIMAGLILLYILMPVLNHYYAEIIM 246 >gi|307731354|ref|YP_003908578.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1003] gi|307585889|gb|ADN59287.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1003] Length = 260 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 109/240 (45%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P L +P++V++ A +I++ P L + F Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPLRVKIGLAAFVTIIVAPTLGALPQVTVFSAE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ + +G G+ +++ + TG + +GL T S + L+S Sbjct: 71 GVW--IIVNQFLIGVALGMTMQIVFQAISATGDFVGLGMGLGFATFFNAQASSSSQVLSS 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I +L VID H Q+ AL+ S+ ++P+ + + + T F L LS Sbjct: 129 YMYTIAMLVFLVIDGHLQMISALLASFSSLPVSANILGAPGWRTLAGFGSTIFSAGLLLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQI ++ I P + +G L L L I ++ F+ F G Sbjct: 189 LPVVAALLITNLALGILNRAAPQIGVFQIGFPLTMLIGLLLLQLMIPNMIPFFARLFTVG 248 >gi|260598459|ref|YP_003211030.1| flagellar biosynthesis protein FliR [Cronobacter turicensis z3032] gi|260217636|emb|CBA31937.1| Flagellar biosynthetic protein fliR [Cronobacter turicensis z3032] Length = 262 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS I ++V++ A+ +I L P + + + Sbjct: 12 WLTLYFWPLLRVLALISTAPILSERAISIRVKIGLALLITIALAPNIPGS---NVPIFSL 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ +G G ++ ++ G +I +GL+ T L L Sbjct: 69 EGLWLGLQQMLIGVAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ +L ++ H + L ++ T+PIG + N F + F+ + ++ Sbjct: 129 IDMLAMLLFLTVNGHLWLISILADTFYTLPIGGDAINSNAFMALARAGGLIFVNGVMMAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G + L + +I H F F Sbjct: 189 PMITLLLSLNLALGLLNRMAPQLTVFAIGFPLTLSIGIIVLAALMPLIAPFCEHLFAEIF 248 >gi|114765218|ref|ZP_01444350.1| flagellar biosynthesis protein [Pelagibaca bermudensis HTCC2601] gi|114542353|gb|EAU45381.1| flagellar biosynthesis protein [Roseovarius sp. HTCC2601] Length = 251 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 115/235 (48%), Gaps = 3/235 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + L+ R+G +M +P L + IP++ RL F + S+ L P + + Sbjct: 11 FLGVALVFARIGGMLMFVPALGETVIPVRHRLAFGVLLSLALYPAVPQ--GPVSLDAPGP 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + +EL LG G+ R+ L+F G I GL+ S + T +++ + Sbjct: 69 LVGALAIELTLGLWIGVTARILLSALEFAGYQIGLVSGLSNAFSPSLGSFQGSTLISTGL 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + G+ ++ D HH + A+V SY P GQ L ++ V + +F + L + +P Sbjct: 129 MLGGVAMIFATDLHHLIIGAMVSSYDLFPPGQILP-SDLAQQIVKAVSQSFYLGLSIVAP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 F ++ N+ +GL +++P +P++F++ P LI G L L ++ +++ +F+ F Sbjct: 188 FYVMGLLVNLGMGLAARMMPSLPVFFVAAPVLIMAGLLVLVMATPVMLREFAERF 242 >gi|283832655|ref|ZP_06352396.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC 29220] gi|291072329|gb|EFE10438.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC 29220] Length = 261 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + I P LS IP +V+L + +IV+ P + + Sbjct: 12 WLNLYFWPLLRILALISTAPILSERAIPKRVKLGLGVIITIVIAPSI---PPADVPIFSI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 M ++ +G G ++ ++ G +I +GL+ T L L L Sbjct: 69 GALWQAMQQILIGIALGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 IDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGGNPVNSNAFLALARAGSLIFINGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I F F Sbjct: 189 PVMTLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCERLFSEIF 248 >gi|238755317|ref|ZP_04616660.1| Flagellar biosynthetic protein fliR [Yersinia ruckeri ATCC 29473] gi|238706453|gb|EEP98827.1| Flagellar biosynthetic protein fliR [Yersinia ruckeri ATCC 29473] gi|328496287|gb|AEB21291.1| FliR [Yersinia ruckeri] Length = 260 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ F + RV + I P L+ I +V++ A+ +I++ P L + V Sbjct: 12 LVSQYFWPLVRVLALISTAPVLNEKSINRKVKVGLAVMITILIAPSL---PPIAIPVFSV 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++M ++ +G GL ++ ++ G +I +GL+ T S L L Sbjct: 69 GAIWVLMQQVLIGIAIGLTMQFAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVLARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L ++ H + L S+ T+PI G F + + F+ L L+ Sbjct: 129 LNLLAMLLFLSLNGHLWMISMLADSFHTLPIQFAPLNGGGFRALTEIGSLIFLSGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ ++ I P + +G L L L + + H F F Sbjct: 189 PMITILLTLNMALGMLNRMTPQLSVFVIGFPLTLTIGMLTLGLIMPALAPYCEHLFGEFF 248 >gi|294675614|ref|YP_003576229.1| flagellar biosynthetic protein FliR [Rhodobacter capsulatus SB 1003] gi|294474434|gb|ADE83822.1| flagellar biosynthetic protein FliR [Rhodobacter capsulatus SB 1003] Length = 258 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 108/232 (46%), Gaps = 4/232 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F++ RVG + ++P +P +V+L AF+++++P ++ + + Sbjct: 20 FIVFLRVGGTMAVMPAFGEMMVPTRVKLGLTFAFTLIVMPGALPFVNAPD--TSLPVAVW 77 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G GL++R++ L LQ G++ + + L+ G + + + L+ + G Sbjct: 78 MFAEIVIGLFIGLMLRLFVLCLQIAGTIAAQSTSLS--QLFGGTTGEPQPAVGELLVLAG 135 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L + H +V + SY +P G + + + F + +++PF+ Sbjct: 136 LAIAVHLGLHVKVTEIFLGSYQALPPGAFPDADLFRQWGLGGISRAFALGFSIAAPFVIA 195 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +++N+++G +N+ +PQ+ + I P G L +++ + ++ +F Sbjct: 196 GLIYNVALGAINRAMPQLMVSMIGAPAQTLGGLALLMIALPTGLLVWNDAFD 247 >gi|327441038|dbj|BAK17403.1| flagellar biosynthesis pathway, component FliR [Solibacillus silvestris StLB046] Length = 258 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 7/232 (3%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 RV + + +P S IP QVR+ A+A + ++ T +++ F A+Y LV+ E Sbjct: 16 VRVSAFFVSVPLFSYRTIPPQVRIILAVALAWMMY----YTFNIEPFEINAFYLLLVLKE 71 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G + GL + +Q G I +G + + + + + LL L Sbjct: 72 AIIGLMLGLAAMIIVSAVQIAGGFIDFQMGFAMANIIDPQTGAQSPLMGQFLNFLMLLLL 131 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 I+ HH + + SY +P+ Q + + + F I ++S+P + Sbjct: 132 LSINGHHLILDGIYYSYQFMPMDQFFPNFGEEGTALFIIKIFVSVFAIAFQMSAPIVATL 191 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + +++G+ K VPQ+ I+ I P I +G L L +++ ++V + Sbjct: 192 FLVTLALGITGKTVPQMNIFVIGFPIKIAVGFLVLIVTMGVLVGVMKELIEF 243 >gi|254436544|ref|ZP_05050038.1| flagellar biosynthetic protein FliR [Octadecabacter antarcticus 307] gi|198251990|gb|EDY76304.1| flagellar biosynthetic protein FliR [Octadecabacter antarcticus 307] Length = 275 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 99/240 (41%), Gaps = 2/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ FL + R+ + M P + IP+Q R+ ++ + L + + N + Sbjct: 25 FMLIFFLHILRLSAFFMAAPFFGAAAIPVQARIIISVLIAFSLYGLI--EVPDPNQLPFL 82 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++V++E+ +G GL + + G I+ + GL + + ++ Sbjct: 83 ALIEVVLIEIAIGVSLGLTFTILFASVAMAGEQIAISAGLGFAAQVDPNSGGQTPVVSQF 142 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + A ++ H V + S+ +P+G+ NF + S + F+I RL+ Sbjct: 143 LNLFAIAAFLSLNGHLHVIGVIRMSFEILPLGEPFNFSGLISGGLTAGGHMFVIASRLAL 202 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ NI++G++ + PQ+ ++ P I + L S + + Sbjct: 203 PIVSILLLANITVGVVTRSAPQLNLFSFGFPLTILTCFVALYFSTTPFAAGIADMIEFML 262 >gi|22126371|ref|NP_669794.1| flagellar biosynthesis protein FliR [Yersinia pestis KIM 10] gi|45441392|ref|NP_992931.1| flagellar biosynthesis protein FliR [Yersinia pestis biovar Microtus str. 91001] gi|108812466|ref|YP_648233.1| flagellar biosynthesis protein FliR [Yersinia pestis Nepal516] gi|149366234|ref|ZP_01888269.1| flagellar biosynthetic protein FliR [Yersinia pestis CA88-4125] gi|162100178|ref|YP_651106.2| flagellar biosynthesis protein FliR [Yersinia pestis Antiqua] gi|165926001|ref|ZP_02221833.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. F1991016] gi|165938779|ref|ZP_02227334.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. IP275] gi|166010957|ref|ZP_02231855.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. E1979001] gi|166210878|ref|ZP_02236913.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. B42003004] gi|167401187|ref|ZP_02306690.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420441|ref|ZP_02312194.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425768|ref|ZP_02317521.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467508|ref|ZP_02332212.1| flagellar biosynthesis protein FliR [Yersinia pestis FV-1] gi|218928939|ref|YP_002346814.1| flagellar biosynthesis protein FliR [Yersinia pestis CO92] gi|229896263|ref|ZP_04511433.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides A] gi|229897200|ref|ZP_04512356.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897927|ref|ZP_04513078.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. India 195] gi|229902842|ref|ZP_04517959.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516] gi|270486629|ref|ZP_06203703.1| flagellar biosynthetic protein FliR [Yersinia pestis KIM D27] gi|294504014|ref|YP_003568076.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|21959356|gb|AAM86045.1|AE013852_7 flagellar biosynthesis protein [Yersinia pestis KIM 10] gi|45436252|gb|AAS61808.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Microtus str. 91001] gi|108776114|gb|ABG18633.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516] gi|115347550|emb|CAL20459.1| flagellar biosynthetic protein FliR [Yersinia pestis CO92] gi|149292647|gb|EDM42721.1| flagellar biosynthetic protein FliR [Yersinia pestis CA88-4125] gi|165913393|gb|EDR32015.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. IP275] gi|165922205|gb|EDR39382.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. F1991016] gi|165990301|gb|EDR42602.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. E1979001] gi|166208058|gb|EDR52538.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. B42003004] gi|166962136|gb|EDR58157.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049576|gb|EDR60984.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055167|gb|EDR64964.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680289|gb|EEO76388.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516] gi|229688968|gb|EEO81033.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. India 195] gi|229693537|gb|EEO83586.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701186|gb|EEO89215.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides A] gi|262361800|gb|ACY58521.1| flagellar biosynthesis protein [Yersinia pestis D106004] gi|262366064|gb|ACY62621.1| flagellar biosynthesis protein [Yersinia pestis D182038] gi|270335133|gb|EFA45910.1| flagellar biosynthetic protein FliR [Yersinia pestis KIM D27] gi|294354473|gb|ADE64814.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|320015444|gb|ADV99015.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 260 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F + RV + I P LS I +V++ + + ++ P L +++ F + Sbjct: 11 VWVSQYFWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSLPP-VNIPLFSSA 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + + ++ +G G+ ++ ++ +G VI +GL+ T S L+ Sbjct: 70 ALWVA--IQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLSR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ I+ L D H + L S+ T+PI GN F + FM L L+ Sbjct: 128 LLNILVTLLFLSFDGHLWLISLLADSFHTLPIQFAPLNGNGFLTLAQSGSMIFMNGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F Sbjct: 188 LPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFSEF 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|328545480|ref|YP_004305589.1| Bacterial export protein, family 1 [polymorphum gilvum SL003B-26A1] gi|326415221|gb|ADZ72284.1| Bacterial export protein, family 1 [Polymorphum gilvum SL003B-26A1] Length = 258 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 1/237 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNRA 67 +++ FL+ CR+G+C+M++PG S I +++RL A+A ++ L P L + + ++ A Sbjct: 16 VLATFLLFCRIGACLMVIPGFSSDRIAVRIRLLVAVAATLALAPLLLPVMSEALPDMSLA 75 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ ELF+G + GLL R + L+ G++++ AIG++ + I + A PL SL Sbjct: 76 TTVRFIVAELFVGLLIGLLGRAFMAALETIGTLVAMAIGMSNIPGVAIDGADALPPLASL 135 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + +++ H +VF L SY T+P G ++ + F L TTF++ LR+ S Sbjct: 136 MTLTATALIFISGHHWEVFRGLAASYETLPPGGAISLRSGLEQFTEQLATTFVLALRIGS 195 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PF+ + +V N +IGL NKL PQIP+YFI+ P++I G FL +++ + F ++ Sbjct: 196 PFIVYSVVVNFAIGLTNKLTPQIPVYFIAMPFVIAGGLYFLFVAVVEAMTVFLDGYV 252 >gi|238751769|ref|ZP_04613257.1| Flagellar biosynthetic protein fliR [Yersinia rohdei ATCC 43380] gi|238710040|gb|EEQ02270.1| Flagellar biosynthetic protein fliR [Yersinia rohdei ATCC 43380] Length = 260 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 101/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + I P LS I +V++ A+ + ++ P L Sbjct: 12 WVSLYFWPLIRILALITTAPVLSEKQINRKVKVGLAVLITFLIAPSLPPVNIPLFSTAGL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G GL ++ ++ G VI +GL+ T S L Sbjct: 72 WVA---AQQILIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ +L D H + L S+ T+PI E GN F + F+ L L+ Sbjct: 129 LNILAMLLFLCFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ ++ I P + +G + + L + ++ H F F Sbjct: 189 PLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISIGLIMPLLAPFTEHLFGEFF 248 >gi|146282914|ref|YP_001173067.1| flagellar biosynthesis protein FliR [Pseudomonas stutzeri A1501] gi|145571119|gb|ABP80225.1| flagellar biosynthetic protein FliR [Pseudomonas stutzeri A1501] gi|327481254|gb|AEA84564.1| flagellar biosynthesis protein FliR [Pseudomonas stutzeri DSM 4166] Length = 258 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 111/234 (47%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L + R+ + +M +P + +P++VRL A+A ++VL+P L +++ Sbjct: 11 GWVGQFLLPLFRIAALLMSMPLIGTQLVPVRVRLYLALAIALVLVPTLPPMPVVESLS-- 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L+ +L +G + G +++++ +G +++ +GL + + ++ ++ L Sbjct: 69 LASLLLIAEQLLIGVMFGFVLQLFFHVFIVSGQLLAMQMGLGFASMVDPANGISVPVLGQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ +L ++ H V L +S+ T+P+G L+ N F L L L Sbjct: 129 FFNMLVILLFLSVNGHLVVLEILAESFVTLPVGGGLST-NHFWEVAGKLGWVLGAGLLLV 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + +V N++ GL+ + PQ+ I+ I P + LG + + + + I Q+ Sbjct: 188 LPAITALLVVNLAFGLMTRAAPQLNIFSIGFPLTLVLGLIIVWIGMADIFAQYQ 241 >gi|304316891|ref|YP_003852036.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778393|gb|ADL68952.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 260 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 107/237 (45%), Gaps = 4/237 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 ++ R+ +L P +P ++ A SI++ + ID N Y Sbjct: 14 FLIVFVRMLGIFILTPLFGTRSLPSMFKIGLAFFTSIIMFDLVKVNIDANNLYQ---YVV 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V E +G + GL V + G +I +G ++ + + + + + I+ Sbjct: 71 IVFNEFLVGLLIGLASMVSFSAIYLAGQIIDYQLGFSIVNVLAAGEETQVPLVGNFVYIL 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 LL +I+ HH++F L +SY IP+G L+ +I F ++ F++ R+S+P + Sbjct: 131 TLLLFLLINGHHKLFVILFQSYSLIPVGTAFLHSESINVVFTKIVSDMFVLGFRISAPIV 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I++ ++++ +PQ+ ++ I P I +G L + + + + F + Sbjct: 191 LSTLLTDITLSIISRTIPQLNVFMIGMPIKIFIGIFTLFIMLPMYLAIIDVLFNGMY 247 >gi|298528401|ref|ZP_07015805.1| flagellar biosynthetic protein FliR [Desulfonatronospira thiodismutans ASO3-1] gi|298512053|gb|EFI35955.1| flagellar biosynthetic protein FliR [Desulfonatronospira thiodismutans ASO3-1] Length = 262 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 1/228 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S +L RV + LLP +P+ ++ + S+ L P L + A Sbjct: 10 TVFSFWLTFFRVSLVVFLLPFFGGEAMPVPIKAALCIVLSLALWPHLSFDAQYFP-EHPA 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++M EL LG + GL++ +Q G +I+ +G + + L E+ Sbjct: 69 QIAVMIMGELVLGLILGLIVHFLFAAIQTGGDLIAFQMGFKMMNVVDPLTGLQESITTQF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + +L I+ H + L +S+ IP G + + + F++ +++S Sbjct: 129 LYMCSMLVFLSINGHLYMLMGLTQSFDLIPPGGLFITPELINQIIYYSSQIFVLAFKIAS 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+ + + + PQ+ + + P I +G LFL L ++I Sbjct: 189 PIIATVFLVNLGLAFMARTAPQMNVLLLGFPIKIAVGLLFLSLVFQLI 236 >gi|152997435|ref|YP_001342270.1| flagellar biosynthetic protein FliR [Marinomonas sp. MWYL1] gi|150838359|gb|ABR72335.1| flagellar biosynthetic protein FliR [Marinomonas sp. MWYL1] Length = 260 Score = 141 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 93/236 (39%), Gaps = 4/236 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +S L R+G+ M LP + +VR+ F+ +I++ P + Sbjct: 12 LTISFLLPFFRIGAFFMALPLFGSRLVSPRVRIAFSFLVAIIITPVIDVPNYDPISPA-- 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y L+ +L +G V G ++ + G + + GL S ++ ++ L Sbjct: 70 -YIVLIAEQLVIGFVLGFVVTILFQLFSLAGQLAAMKAGLGFAMSNDPANGISVATLGQY 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + LA + H + L +S+ PIG + + V + F L + Sbjct: 129 YLSMVALAFLGTNGHLVMIEYLAESFNYWPIGSGFDSQR-YWQLVLLGGWMFEKALLIVL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P +V N+S G++ K PQ+ ++ + P ++ F + ++ + + F Sbjct: 188 PLAVAVLVINLSFGVVAKASPQLNVFALGFPIIMLFSLFFFWIMLDDFLNIYLLFF 243 >gi|220934506|ref|YP_002513405.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. HL-EbGR7] gi|219995816|gb|ACL72418.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. HL-EbGR7] Length = 257 Score = 141 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 107/241 (44%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + SL R+ + ++ P + ++VRL A ++V+ P + ++ Sbjct: 10 AWIGSLLWPFLRISAMLLAAPLYGAGTVTVRVRLAIAFILALVVAPLIPLPPAVEPLSLA 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ +G G ++++ L G I+ ++GL + + + ++S Sbjct: 70 GLVVS--VQQILIGLTIGFVLQMVFAALTQAGEAIALSMGLGFASMVDPQSGVQVPVVSS 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I+ L ++ H + + S+ +P+G E + V+ T F+ L ++ Sbjct: 128 YFVIMSTLLFLALNGHVALIELTLLSFQALPVGVEGVTREGLWALVSWGSTMFLYALLVA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+S+G++ + PQ+ I+ + P +I LG + L L+ +++ +F+ G Sbjct: 188 LPAVASMLLVNLSMGVITRAAPQLNIFAVGFPMMIMLGFILLLLTTPVLLPKFTELLASG 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|299531249|ref|ZP_07044659.1| flagellar biosynthetic protein FliR [Comamonas testosteroni S44] gi|298720656|gb|EFI61603.1| flagellar biosynthetic protein FliR [Comamonas testosteroni S44] Length = 254 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L RV + P S IPM++++ A ++ P L + + + Sbjct: 11 AWLSPLIWPFVRVLALFTTAPVFSQKAIPMRLKVGLAFLVALCAQPVLGEQTVVSIASAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A ++ ++ +G G +R+ ++ G VI +GLN + + + + + Sbjct: 71 AL--GTLVQQVVIGLSVGFAVRLVMAAIEVAGEVIGLQMGLNFASFFDPTSNAQLSAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L VI+ H V A++KS+ P+ M F ++ Sbjct: 129 FMVQIATLLFIVINGHLLVLMAVLKSFEAFPVDGNFLQAISQMRIHEMGSAVFASAFWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+ +G+++++ PQ+ IY + P + +G L L ++ ++ Sbjct: 189 LPMIAMLLFVNLVLGIISRVAPQMNIYAVGFPVTLTVGLLGLTATLPLL 237 >gi|226225722|ref|YP_002759828.1| flagellar biosynthetic protein FliR [Gemmatimonas aurantiaca T-27] gi|226088913|dbj|BAH37358.1| flagellar biosynthetic protein FliR [Gemmatimonas aurantiaca T-27] Length = 295 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 3/235 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L R+G +++ P S +PM++R + F+++LLP T D Sbjct: 16 GVATALVLTALRIGGLLLIAPAWSAKSVPMKLRTAMLVLFAVLLLPTALATTDRATLAIT 75 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + E +G G + G +F G +++T IGL+ ++ S Sbjct: 76 PATF---LAETAIGFAFGFAAALVIAGAEFAGELMTTTIGLSGAAIFDPVNNTQGAIFGS 132 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ L L + H + A+ KS+ +P+G ++ F + T F L+ + Sbjct: 133 FMQLMALTLLLITGGHIVMIEAIAKSFSVLPLGAPIDMQAGFLALTKAGGTIFATGLQFA 192 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +P + +V NI++ +L + PQ+ I ++ P IG+G L S+ +IV+ Sbjct: 193 APVIAAILVTNIALAILGRAAPQLQIMSLAFPLQIGIGLLTFAGSVGLIVHALGE 247 >gi|255099431|ref|ZP_05328408.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-63q42] Length = 516 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 1/143 (0%) Query: 101 ISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ 160 + +GL++ + T +++L+ L+ + +D HH + + S+ IPIG+ Sbjct: 1 MDQQMGLSMINMFDPNSMTQTTLIDNLMNWTALMIFFNMDGHHVLIRGIRYSFELIPIGK 60 Query: 161 ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 NI +N+ F+ +++ P + ++ + +GL+++ VPQ+ + + P Sbjct: 61 PFVDNNI-DYIINIFVQCFLTGFKIAIPIVLCLLMADFILGLISRSVPQLNVMIVGMPLK 119 Query: 221 IGLGSLFLCLSIEIIVYQFSHSF 243 I +G +SI +IV Q SH Sbjct: 120 ILVGIALFIISIPLIVNQISHLL 142 >gi|92114090|ref|YP_574018.1| flagellar biosynthetic protein FliR [Chromohalobacter salexigens DSM 3043] gi|91797180|gb|ABE59319.1| flagellar biosynthetic protein FliR [Chromohalobacter salexigens DSM 3043] Length = 261 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 92/240 (38%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F R+ + + P + +P Q + + + P L D Sbjct: 12 WLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPPMPDTPIVSIGG 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +++ E+ +G G+++RV +Q G I +GL T + L+ + Sbjct: 72 L--GILIQEMLIGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVGNSM-VLSRI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 +I LL ++ H L S+ T+P+G G+ F + ++ Sbjct: 129 FQMITLLMFLALNGHLIALEILANSFQTLPVGGPRVDGSAGEVIARWGGEIFTSGVLMAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ N+++G+LN+ PQ+ I+ I P + G + L + ++ F F Sbjct: 189 PLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRFLEILFSNSF 248 >gi|304392485|ref|ZP_07374425.1| flagellar biosynthetic protein flir [Ahrensia sp. R2A130] gi|303295115|gb|EFL89475.1| flagellar biosynthetic protein flir [Ahrensia sp. R2A130] Length = 237 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 2/228 (0%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 CRVG C ++LPGLS IP R+ +A ++ + + Q + + +L+ Sbjct: 5 FCRVGGCFIVLPGLSSGRIPGPARIYLTLAVALSIA--FARGGEGQAVIYGSGLLRLIFA 62 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E +G GL R+ L L F G+ I IG N G+ DS ++ L +LI L+ Sbjct: 63 ESLVGLFIGLAARMMMLALSFAGTSIGMVIGFNNLFGQGVEDSESQAALTTLITFSALVL 122 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 L+ +DFHH V +L +SY P G + + +L + F I+L L+ PFL + ++ Sbjct: 123 LFQMDFHHAVIASLHRSYEIFPQGAVPEPQMLLVNITRILSSAFFIVLGLAGPFLVYGLI 182 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 FN +IG+LNKL PQIPI+F+S P LI G + L++ ++ +F +F Sbjct: 183 FNTAIGVLNKLTPQIPIFFVSLPVLIMGGLMLAYLALPELLRRFVDAF 230 >gi|51596027|ref|YP_070218.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis IP 32953] gi|153948291|ref|YP_001401273.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis IP 31758] gi|170024629|ref|YP_001721134.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis YPIII] gi|186895132|ref|YP_001872244.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis PB1/+] gi|51589309|emb|CAH20930.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP 32953] gi|152959786|gb|ABS47247.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP 31758] gi|169751163|gb|ACA68681.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis YPIII] gi|186698158|gb|ACC88787.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis PB1/+] Length = 260 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F + RV + I P LS I +V++ + + ++ P L +++ F + Sbjct: 11 VWVSQYFWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSLPP-VNIPLFSSA 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + + ++ +G G+ ++ ++ +G VI +GL+ T S L+ Sbjct: 70 ALWVA--IQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLSR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ I+ L D H + L S+ T+PI GN F + FM L L+ Sbjct: 128 LLNILVTLLFLSFDGHLWLISLLADSFHTLPIQFAPLNGNGFLTLAQSGSMIFMNGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F Sbjct: 188 LPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFGEF 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|312884899|ref|ZP_07744589.1| flagellar biosynthesis protein FliR [Vibrio caribbenthicus ATCC BAA-2122] gi|309367376|gb|EFP94938.1| flagellar biosynthesis protein FliR [Vibrio caribbenthicus ATCC BAA-2122] Length = 260 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S F R+G+ +M++ ++ +VRL +A + ++P + ++ A Sbjct: 11 WIASYFWPYTRIGAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPVIPAAPQNIELLSFA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + V+ ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFIT-VLEQILIGVAMGTVTQFLIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ ++P+G F L F L +S Sbjct: 130 FMFLATMFFLATDGHLKMITFVVMSFQSLPVGVGALTNVDFRELALWLGIMFQFALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L I + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYLIAGLYNHYDLLWHEG 248 >gi|89068707|ref|ZP_01156093.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] gi|89045670|gb|EAR51732.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] Length = 251 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 3/232 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L R+G+ + +PG +P + RL A+A ++ L P I+ + Sbjct: 14 YILAFARIGAIFVFMPGFGERPVPARFRLFMALAVALALYPATG--IEPVTLDAPVAFLG 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L+ +E+ +G GL R+ LQF G I GL+ + T + + + Sbjct: 72 LLALEVTIGLWIGLTARIVMSALQFAGYQIGYVAGLSNALAPTTGQFEGATMVAGALMMA 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 ++ D HH + AL+ SY P+G+ + G++ + V + +F + L LS PF Sbjct: 132 ATALIFATDLHHLIIRALLTSYEVFPVGR-IMPGDLAAQTVAAVGASFYVGLALSVPFYV 190 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 IV N+ +GL N+++P +P++F++ P LI G + L + ++ Sbjct: 191 MGIVLNVGLGLANRMMPTLPVFFVAGPVLIASGLIVLLAAAPTMLDHHLQEL 242 >gi|213580028|ref|ZP_03361854.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 253 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 1 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 57 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 58 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 117 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 118 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 177 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 178 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 237 >gi|254506950|ref|ZP_05119089.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus 16] gi|219550235|gb|EED27221.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus 16] Length = 260 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 95/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++P +VRL +A + ++P + ++ Sbjct: 11 WLANYFWPYTRISAMLMVMSVTGARFVPTRVRLYLGLALTFAVMPVIPAVPKEIELLSFE 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFLTL-LEQIVIGVAMGTVTQFMIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ ++PIG F + L F + L +S Sbjct: 130 FMFLATMFFLATDGHLKMIMLVVMSFQSLPIGAGSLTTVDFRELASWLGIMFKVSLSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + +L G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILGGLYSHYELFWLQG 248 >gi|218778858|ref|YP_002430176.1| flagellar biosynthetic protein FliR [Desulfatibacillum alkenivorans AK-01] gi|218760242|gb|ACL02708.1| Flagellar biosynthetic protein FliR [Desulfatibacillum alkenivorans AK-01] Length = 260 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 102/228 (44%), Gaps = 1/228 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M LI+ RV + + P + IP+ V+ ++ ++ L P + Sbjct: 11 MAVFALILIRVSVILFMFPVFGSNLIPLPVKAGLSLLLTLYLTPIV-QVNPQSFPDTVLE 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 +++ E +G L++ + +Q G ++ +G + + L++ Sbjct: 70 GGVMILCEAVMGLTLSLIVSFFFAAVQVGGQLVGYQMGFAIANVFDPVSGGQMSILSNFA 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L+ V++ HH A+ S+ +P+G +I S + + F + L+++ P Sbjct: 130 FWVTLVLFIVLNGHHIFIRAVAHSFEIVPVGHLYAGRSIMPSMIKLSTDMFTLSLQIAGP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + ++ N + G++ K+VPQI I ++ P +G+G F +S+++I+ Sbjct: 190 AIVALLLVNAAFGIVAKVVPQINILIVAFPINVGMGLFFFGVSLQLIL 237 >gi|264676606|ref|YP_003276512.1| flagellar biosynthetic protein FliR [Comamonas testosteroni CNB-2] gi|262207118|gb|ACY31216.1| flagellar biosynthetic protein FliR [Comamonas testosteroni CNB-2] Length = 254 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 95/229 (41%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L RV + P S IPM++++ A ++ P L + + + Sbjct: 11 AWLSPLIWPFVRVLALFTTAPVFSQKAIPMRLKVGLAFLVALCAQPVLGEQTVVSIASAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A ++ ++ +G G +R+ ++ G V+ +GLN + + + + + Sbjct: 71 AL--GTLVQQVVIGLSVGFAVRLVMAAIEVAGEVVGLQMGLNFASFFDPTSNAQLSAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L VI+ H V A++KS+ P+ M F ++ Sbjct: 129 FMVQIATLLFIVINGHLLVLMAVLKSFEAFPVDGNFLQAISQMRIHEMGSAVFASAFWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+ +G+++++ PQ+ IY + P + +G L L ++ ++ Sbjct: 189 LPMIAMLLFVNLVLGIISRVAPQMNIYAVGFPVTLTVGLLGLTATLPLL 237 >gi|226941265|ref|YP_002796339.1| FliR1 [Laribacter hongkongensis HLHK9] gi|226716192|gb|ACO75330.1| FliR1 [Laribacter hongkongensis HLHK9] Length = 264 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 98/241 (40%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ + + RV ++ P +P +V++ A+A +++L+P L + Sbjct: 11 LLLSTYLWPLFRVMGFLLADPLFGTKAVPRRVKVVLAIALTLLLVPLLPPMPAVPVVSGE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ +L +G G +R+ ++ G++I +GL L+ Sbjct: 71 GVF--IIVQQLLIGVAMGFAMRLVITAVELAGAMIGMQMGLGFAMQFDPMMGAQVPSLSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ + L L + H + + +S+ PI + + L LS Sbjct: 129 LLTLSTYLVLLSFNGHLIMLGTVAESFTLFPISLDPLPAAGLQLVAAWGGKMLALALWLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N++IG++ + PQ I+ P + +G + L ++ + +L G Sbjct: 189 LPVVVALLITNLAIGVMTRAAPQFNIFSFGFPLTLLIGFVVLYYALPFMGQALQQLYLQG 248 Query: 247 F 247 F Sbjct: 249 F 249 >gi|148558044|ref|YP_001257996.1| flagellar biosynthesis protein FliR [Brucella ovis ATCC 25840] gi|148369329|gb|ABQ62201.1| flagellar biosynthetic protein FliR [Brucella ovis ATCC 25840] Length = 239 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 69/214 (32%), Positives = 122/214 (57%), Gaps = 1/214 (0%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + I Sbjct: 6 LPLNEIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAV 65 Query: 63 FVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + +L++ E+F+G + G+L +Y QF ++++ A+G + + I+++ + Sbjct: 66 DAGQPWTLFRLMVGEMFIGALIGILAHIYFWAQQFMANMMAMAVGYSGSPADSITENEPQ 125 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L +++ L +V D H ++F AL+ SY IP+ F + L F+ Sbjct: 126 ATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLA 185 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFI 215 LR+++PF+ F I+ N +IGL+NKL P IP+YFI Sbjct: 186 TLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFI 219 >gi|78485087|ref|YP_391012.1| flagellar biosynthetic protein FliR [Thiomicrospira crunogena XCL-2] gi|78363373|gb|ABB41338.1| flagellar biosynthetic protein FliR [Thiomicrospira crunogena XCL-2] Length = 247 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 99/229 (43%), Gaps = 2/229 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 F R+ ++++P LS SY+PM VRL A+ + + P L + F Sbjct: 4 YFWPFIRISGMLLMVPILSGSYVPMNVRLLLAVFITFAVAPSLALPPPVDPFTWHGIL-- 61 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ +L +G GL+ + G + S ++GL + + + + + + II Sbjct: 62 LIVQQLGIGVAIGLIFALIFQAFVIAGHLASMSMGLAMASMVDPATGVNTPIIGRYFTII 121 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L +++ H VF A+++S+ T+PIG + F + ++ P + Sbjct: 122 ATLLFLLMNGHVLVFKAVLQSFETLPIGLHFFTQDSLKLIYGFGSQMFESGVTIALPLVT 181 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ NI+ G++ + P + I+ + P + +G + L ++ Sbjct: 182 ALLLVNIAFGVVARAAPALNIFAVGFPVTLLVGLIMLVFITPLLYPNLQ 230 >gi|56964017|ref|YP_175748.1| flagellar biosynthesis protein FliR [Bacillus clausii KSM-K16] gi|56910260|dbj|BAD64787.1| flagellar biosynthetic protein FliR [Bacillus clausii KSM-K16] Length = 260 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 98/238 (41%), Gaps = 7/238 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI RV S ++LP + +P ++L + + L L D+ + Sbjct: 10 AFLLIFIRVSSFFVVLPLFNHRTVPAPLKLGLSAFLAATLAVSL----DVPELALDLPFL 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + E +G GL+ + +Q G VI +G L + S + + Sbjct: 66 LLALKEFAIGIAAGLMASMILYAVQVAGGVIDFHLGFMLANVVDPQTGAQSPLTGSYLYL 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 +L L +ID HH + ++ SY +P+ Q G++ ++ F + + ++ Sbjct: 126 FAMLYLLIIDGHHLLLDGVIYSYQFVPLDQLVLPFGSGHVMEHVTQVMVMLFAMAVSMAM 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + ++++G++++ VPQ+ ++ + P + G + + I + + F Sbjct: 186 PVAGALFLVDVALGIISRTVPQMNVFVVGIPIKMLAGFIVFAIYIGVFFMSVNVLFEE 243 >gi|77165625|ref|YP_344150.1| flagellar biosynthesis protein FliR [Nitrosococcus oceani ATCC 19707] gi|76883939|gb|ABA58620.1| Flagellar biosynthesis protein FliR [Nitrosococcus oceani ATCC 19707] Length = 236 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83 M +P +P+++RL A+A ++V+ P + T V LVM + +G Sbjct: 1 MAMPLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEGGL---LVMQQFLIGFAM 57 Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 L++++ G +++T +GL + M + +A + ++ L ++ L ++ H Sbjct: 58 ALVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQLYTVLITLVFLGLNGHL 117 Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203 V L +S+ +P+G E F + ++ P + + N++ G++ Sbjct: 118 VVIQVLAESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIALPAIGALSLVNLTFGVM 177 Query: 204 NKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ PQ+ + I P + LG L ++ + Sbjct: 178 SRAAPQLNPFSIGFPLTLILGFWVLLFTLPNAPSHLVNL 216 >gi|209964222|ref|YP_002297137.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW] gi|209957688|gb|ACI98324.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW] Length = 254 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 117/241 (48%), Gaps = 1/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L+ R+ + M++P + I ++RL FA+ + V+ P + + + Sbjct: 9 GSVFAFLLVFVRLAAAFMIIPAIGEQAISARIRLLFALVVAAVVTPVVRQYLPPEP-SAP 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + LV+ E+ +G G L RV L+ G +I+ +GL + + + P+ + Sbjct: 68 AELAALVVSEILVGLFIGTLARVLLTALETGGFLIANQLGLAAAQAFNPALAAPGNPIGA 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+GI ++ ++ D HH + A+V SY L G+ + T+F I ++L+ Sbjct: 128 LLGIGAVVVIFATDLHHMLILAVVDSYTLFSPADGLPLGDATEHLAQTVNTSFAIGVQLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 PF +F + +GL+ +LVPQ+ ++F+ P I +GSL L LS+ ++ + F Sbjct: 188 VPFFVIGFLFYLGLGLVARLVPQVQVFFVGLPIQIAIGSLMLSLSLSALMLFWLTHFEDQ 247 Query: 247 F 247 Sbjct: 248 L 248 >gi|218549275|ref|YP_002383066.1| flagellar biosynthesis protein FliR [Escherichia fergusonii ATCC 35469] gi|218356816|emb|CAQ89444.1| flagellar export pore protein [Escherichia fergusonii ATCC 35469] Length = 267 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P + +L + ++ + P L D+ F A Sbjct: 17 WLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPMLPPH-DVPIFSYAA 75 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 76 VWVA--IQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 134 LDMLVLLLFLTFNGHLWLISILVDTFHTLPIGGEPLNSNAFLALTRAGGLIFLNGLMLAL 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G + + +I H F F Sbjct: 194 PVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEVF 253 >gi|221069286|ref|ZP_03545391.1| flagellar biosynthetic protein FliR [Comamonas testosteroni KF-1] gi|220714309|gb|EED69677.1| flagellar biosynthetic protein FliR [Comamonas testosteroni KF-1] Length = 254 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 95/229 (41%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L RV + P S IPM++++ A ++ P L + + + Sbjct: 11 AWLSPLIWPFVRVLALFTAAPVFSQKAIPMRLKVGLAFLVALCAQPVLGEQTVVSIASAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A ++ ++ +G G +R+ ++ G V+ +GLN + + + + + Sbjct: 71 AL--GTLVQQVVVGLSVGFAVRLVMAAIEVAGEVVGLQMGLNFASFFDPTSNAQLSAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L VI+ H V A++KS+ P+ M F ++ Sbjct: 129 FLVQIATLLFIVINGHLLVLMAVLKSFQAFPVDGNFLQAISQMRIHEMGSAIFSSAFWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+ +G+++++ PQ+ IY + P + +G L L ++ ++ Sbjct: 189 LPMIAMLLFVNLVLGIISRVAPQMNIYAVGFPVTLTVGLLGLTATLPLL 237 >gi|323703183|ref|ZP_08114836.1| flagellar biosynthetic protein FliR [Desulfotomaculum nigrificans DSM 574] gi|323531842|gb|EGB21728.1| flagellar biosynthetic protein FliR [Desulfotomaculum nigrificans DSM 574] Length = 255 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 104/237 (43%), Gaps = 1/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + FL+ R+ S P ++ IP V+ + +I++ P + + Sbjct: 6 LITTFFLVFMRMVSFTFACPLYAIPGIPPLVKAGLSFILAILITPMVKP-VSADLPGGLW 64 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +V E+ +G V GL+ ++ G ++ IG + + M T ++ Sbjct: 65 GFGLVVFSEVGVGLVLGLVCTFVFNVIRMAGQLLDFQIGFAMASVMDPLSGSVNTLVSRF 124 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + L+ +D HH + AL KSY +P+ G + + + TF + +++ + Sbjct: 125 LYFLTLVLFLNVDGHHVLIRALAKSYELVPLNAAGINGEVTLLIIRIFADTFALAVQICA 184 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 P + ++ ++++GL+ K PQ+ I+ + P I +G L + + + F F Sbjct: 185 PVVAVLVITDLAMGLVGKTAPQMNIFQLGFPLKIAVGVASLAILLPALTSVFKILFD 241 >gi|322378523|ref|ZP_08052971.1| flagellar biosynthesis protein FliR [Helicobacter suis HS1] gi|322379824|ref|ZP_08054119.1| flagellar biosynthesis protein FliR [Helicobacter suis HS5] gi|321147747|gb|EFX42352.1| flagellar biosynthesis protein FliR [Helicobacter suis HS5] gi|321149037|gb|EFX43489.1| flagellar biosynthesis protein FliR [Helicobacter suis HS1] Length = 275 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ I L P + IP+ +R + ++V P L + + Sbjct: 36 FLLLFLRLSGVIALFPFFDNNLIPVSIRGALSFFLTLVFYPTLPH---PPLYTTAETFLI 92 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 E FLG ++V + F IS ++GL + ++ + + ++ ++ Sbjct: 93 ACCAEFFLGLCASFFLQVVFHAIAFATDTISFSMGLTMASAYDPISGAQKAIVGQVVLLL 152 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L + HH + + S IP+G + +I + + L FM+ ++ P L Sbjct: 153 AILIMLQTSMHHLIILWVQHSLEKIPLGGFVFTSHIAQASMQALGHLFMVGFSMAFPILA 212 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + +I G++ K PQ + I P I + L L L + I+++F L F Sbjct: 213 IIMFGDIVFGMIMKTHPQFNLLAIGFPLKIAIALLGLILIMASIMHRFKEQLLQAF 268 >gi|153834119|ref|ZP_01986786.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01] gi|156975418|ref|YP_001446325.1| flagellar biosynthesis protein FliR [Vibrio harveyi ATCC BAA-1116] gi|148869489|gb|EDL68487.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01] gi|156527012|gb|ABU72098.1| hypothetical protein VIBHAR_03149 [Vibrio harveyi ATCC BAA-1116] Length = 260 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 91/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL +A + + P + ++ Sbjct: 11 WIANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFR 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFMT-IAEQIVIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F + L F L +S Sbjct: 130 FMFLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMASWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILAGLYSHYELFWAVG 248 >gi|261344132|ref|ZP_05971776.1| flagellar biosynthetic protein FliR [Providencia rustigianii DSM 4541] gi|282567724|gb|EFB73259.1| flagellar biosynthetic protein FliR [Providencia rustigianii DSM 4541] Length = 259 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 101/241 (41%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F R+ + P + + R+ A +++ P L + + Sbjct: 11 LWLSQGFYPFIRLLALFGTAPFFNEKQSITKARIALAFFIVLIISPQL---PVVNIPLFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A +++ ++ +G GL +++ ++ G VI +GL+ T + L Sbjct: 68 AMGLWVIVQQVVIGTAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + +I LL D H + Y L S+ IPI + F F+ T F+ L L+ Sbjct: 128 IFNLITLLLFLSFDGHLWLIYILTNSFELIPIQTTPLNRDGFWIFLQFANTIFINGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 PF+ +++ N+++G+LN++ PQ+ ++ + P + +G L L I I+ Sbjct: 188 LPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYTERLIHQA 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|148976425|ref|ZP_01813131.1| flagellar biosynthesis protein R [Vibrionales bacterium SWAT-3] gi|145964248|gb|EDK29504.1| flagellar biosynthesis protein R [Vibrionales bacterium SWAT-3] Length = 260 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 92/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 WLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + V ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFLT-VFEQIVIGVAMGFVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMLLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLTSVDFRELALWLGIMFKAALAMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + ++ G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLLCWYILGGLYSHYELFWMQG 248 >gi|292493585|ref|YP_003529024.1| flagellar biosynthetic protein FliR [Nitrosococcus halophilus Nc4] gi|291582180|gb|ADE16637.1| flagellar biosynthetic protein FliR [Nitrosococcus halophilus Nc4] Length = 258 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 99/232 (42%), Gaps = 3/232 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + CR+G+ +M +P + +P++VRL A+A ++V+ P + T + Sbjct: 14 AYLWPFCRIGALLMAVPLFGSAVVPVRVRLVLALALTVVIAPVIPTTPVSPLSLQGGL-- 71 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ + +G ++++ G ++ +GL + + ++ + ++ L I Sbjct: 72 -LIIQQFLIGIAMAFVLQMVFQAFVIGGQTVAMQMGLGFASMIDPQHGVSVSMISQLYQI 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L +D H V L +S+ +P+G + F V F + ++ P + Sbjct: 131 LITLVFLALDGHLVVIQVLAESFYRLPLGMSGLNSDNFWQLVGGGSWMFAGSMLIALPAI 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ N++ G++ + PQ+ + I P + LG L ++ + Sbjct: 191 GALLLVNLTFGVMTRAAPQLNPFSIGFPLTLILGFGILLFTLPSTSSHLVNL 242 >gi|269961632|ref|ZP_06175994.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3] gi|269833673|gb|EEZ87770.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3] Length = 260 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 91/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL +A + + P + ++ Sbjct: 11 WIANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFR 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFMT-IAEQIIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F + L F L +S Sbjct: 130 FMFLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMASWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILAGLYSHYELFWAVG 248 >gi|77463636|ref|YP_353140.1| flagellar protein FliR [Rhodobacter sphaeroides 2.4.1] gi|126462468|ref|YP_001043582.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC 17029] gi|332558492|ref|ZP_08412814.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides WS8N] gi|3435111|gb|AAC32324.1| flagellar protein FliR [Rhodobacter sphaeroides] gi|77388054|gb|ABA79239.1| Flagellar protein FliR [Rhodobacter sphaeroides 2.4.1] gi|126104132|gb|ABN76810.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC 17029] gi|332276204|gb|EGJ21519.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides WS8N] Length = 269 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 95/230 (41%), Gaps = 2/230 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F+ R+G+ ++ P ++P+ VR+ + ++ +L + + + L Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRIVATVILTLPVLGRV--ELPPPEELASLAAIPL 80 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 +M E+ +G GL++ + G I++ GL + S + + G+ Sbjct: 81 MMQEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAGGQTPVVAQIFGLAL 140 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +D H L++SY ++P G G + + F++ L++ P + Sbjct: 141 TTVFLALDGHLTALDILLRSYESLPPGAPFAPGRFLEAGIGAGGRMFLLGLQIMMPVVAA 200 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 I+ N++IG++ + PQ+ ++ P + + L L+ + FS Sbjct: 201 LILINVTIGIVTRSAPQLNVFSFGFPVTMSATLILLFLTAPGTMGAFSGL 250 >gi|85711030|ref|ZP_01042090.1| flagellar biosynthesis protein [Idiomarina baltica OS145] gi|85694943|gb|EAQ32881.1| flagellar biosynthesis protein [Idiomarina baltica OS145] Length = 260 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 95/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + RV S +M + S + + ++++ ++A + + P L D Sbjct: 11 WLQQHLWPLTRVSSMLMSMALFSGTLVNSRIKVLLSLAITFAISPALPDVNPGVEIFTVG 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G GLL ++ G +I+ IGL + + ++ + Sbjct: 71 GML-VTAQQIVIGVALGLLSLLFLQTFVLGGQIIAMQIGLGFASMVDPTNGQQVPVIAQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L +D H + +V S+ ++P+ + F + + F L Sbjct: 130 FLMLASLIFLALDGHLLMIQMVVASFDSVPVAMTGLNADAFRMIADWGSSMFSAALTAML 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G + L L++ ++ F + + Sbjct: 190 SGIIALLLINLSFGVMTRAAPQLNIFAIGFPITMVSGLIVLWLTLGGFIFHFENQWQEA 248 >gi|255021384|ref|ZP_05293432.1| Flagellar biosynthesis protein FliR [Acidithiobacillus caldus ATCC 51756] gi|254969247|gb|EET26761.1| Flagellar biosynthesis protein FliR [Acidithiobacillus caldus ATCC 51756] Length = 262 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 104/243 (42%), Gaps = 3/243 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + F R+ + + P S S +P+QVR+ A S+ + P L + Sbjct: 10 EHWIGAFFWPFVRILALLSTAPVFSASAVPIQVRVGLAAIISVAIAPALPTLPAVHFLSG 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L++ ++ +G G + + +QF GSVIS +GL + + + L+ Sbjct: 70 AGL--VLLVEQIVIGTALGFAVTLIFSAVQFAGSVISLQMGLGFSSFFDPTTGVQVPTLS 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + LL ++ V L++S+ +P+ + + F + + Sbjct: 128 NFLNLAVLLFFMALNGQLLVLVVLMRSFTVLPVDPNLVVHATAWHVLAAAGAAVFSLGMA 187 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +++P L + NI++G+L+KL PQ+ ++ + P LIG+G + L L + Sbjct: 188 IAAPVLGALFLVNIALGVLSKLAPQLNLFVVGFPLLIGVGLIGLYLLAPALELVVRQLLD 247 Query: 245 YGF 247 Sbjct: 248 LAL 250 >gi|169831896|ref|YP_001717878.1| flagellar biosynthetic protein FliR [Candidatus Desulforudis audaxviator MP104C] gi|169638740|gb|ACA60246.1| flagellar biosynthetic protein FliR [Candidatus Desulforudis audaxviator MP104C] Length = 253 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 2/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L+ R+ + I P +M IP V+ A S+ LLP + Sbjct: 4 LVTFLLVFTRLAAFIAACPVFAMREIPPTVKAGLAFVLSLALLP--SAGTAAPPLDSFLG 61 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 +S + E +G G+ + GL G I IG + M ++ L+ Sbjct: 62 FSLALAKEAAVGLGLGIFTSLVFHGLLLAGQYIGFQIGFAIAEMMSPGTEGERAIVSRLM 121 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L+ ID HH + L KS+ +P+G + F+I L +++P Sbjct: 122 WLFALVFFVSIDGHHLLIAGLAKSFELVPLGAAVAQMKTTLFMAKAYGGLFVIALTIAAP 181 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + +V + +GL+ ++VPQI ++ + P+ + G L ++I +I + + F Sbjct: 182 VMAVLLVTDAILGLMVRMVPQINVFMLGFPFKVFAGLFALMVTIPVIGWALTRVF 236 >gi|167585024|ref|ZP_02377412.1| flagellar biosynthetic protein FliR [Burkholderia ubonensis Bu] Length = 260 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 105/241 (43%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + + P + +P +V++ A ++V+ P L + F + Sbjct: 11 AWLTAFLWPFVRMLALVAVAPVTGHASVPGRVKIGVAAFMALVVAPTLGAMPAVTVFSAQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ + +G G +++ Q G I ++GL T S A + Sbjct: 71 GIW--IVVTQFLIGVAMGFTMQIVFAAAQAAGDAIGLSMGLGFATFFDPHASGATPVMGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + +LA D H QV AL S+ +P+ EL + + T F + L L+ Sbjct: 129 FLNAVAILAFLAFDGHLQVLAALAASFQALPVSAELLHAPGWRTLAAFGATVFQMGLLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++G+LN+ PQ+ I+ + P + +G L + L + +V F F G Sbjct: 189 LPVVAALLIANLALGILNRAAPQVGIFQVGFPVTMLVGLLLVQLMVPNMVPFFGRLFDMG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|167552786|ref|ZP_02346537.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322619|gb|EDZ10458.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 264 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 101/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + V + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLCVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|222833216|gb|EEE71693.1| predicted protein [Populus trichocarpa] Length = 314 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 95/240 (39%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + + P S IPM++++ A ++ P L D + +N Sbjct: 69 AWLSPVLWPFLRVLAMFSVAPVFSQRVIPMRLKIGLAFLVAVCAQPVLGDQPVIG--INS 126 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ ++ +G G +R+ ++ G V+ +GLN + + + + + Sbjct: 127 PQALGTLIQQVGVGLAVGFAVRLVFAAVEVAGEVVGLQMGLNFASFFDPTTNAQLSAVAR 186 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L VI+ H V A++KSY P+ M F ++ Sbjct: 187 FMVQISTLLFIVINGHLLVLMAVLKSYEAFPVDGSFLQAINQMRLHEMGAAVFASAFWIA 246 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+ +G+++++ PQ+ IY + P + + L ++ ++ G Sbjct: 247 LPMVAMLLFVNLVLGIISRVAPQMNIYAVXFPVTLTVXLTGLMATLPLLEQPLVALLQRG 306 >gi|148976241|ref|ZP_01812965.1| putative flagellar biosynthetic protein FliR [Vibrionales bacterium SWAT-3] gi|145964335|gb|EDK29590.1| putative flagellar biosynthetic protein FliR [Vibrionales bacterium SWAT-3] Length = 260 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 95/238 (39%), Gaps = 3/238 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L+ R ++ P IP++V+L FA FS++L P + + F Sbjct: 12 WLGVLWWPFVRFTGLFLIAPFFGDKAIPVRVKLLFAFIFSLLLAPMVKEVPPFNPFSIDT 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +L G + G + ++ G IS +GL + ++ ++ + + Sbjct: 72 LLFS--FYQLIFGFLIGFAVMIFFTIFSIAGQAISMQMGLAMAVMNDPANGVSIAIIGRI 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I +L +D H V +S+ P+ F N + M+ F L ++ Sbjct: 130 MFITSMLLFLSLDGHLVVLLVFKESFEYWPLNSPFPF-NSIEYVLKMVSWMFATGLLVAV 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + ++ NI+ GL+NK P + ++ + P + LG L S+ I + L Sbjct: 189 PAIVVMLLSNITFGLMNKAAPSLNVFALGFPMTMLLGLFALMASLTGIGDHYFDLVLE 246 >gi|84388123|ref|ZP_00991019.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] gi|84377190|gb|EAP94060.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] Length = 260 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 92/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 WLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + V ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFLT-VFEQIVIGVAMGFVTQFLIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMLLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLTAVDFRELALWLGIMFKTALAMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + ++ G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLLCWYILGGLFSHYELFWIQG 248 >gi|52842014|ref|YP_095813.1| flagellar biosynthetic protein FliR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359331|ref|YP_001250538.1| flagellar biosynthetic protein FliR [Legionella pneumophila str. Corby] gi|296107378|ref|YP_003619078.1| flagellar biosynthetic protein FliR [Legionella pneumophila 2300/99 Alcoy] gi|52629125|gb|AAU27866.1| flagellar biosynthetic protein FliR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281104|gb|ABQ55192.1| flagellar biosynthetic protein FliR [Legionella pneumophila str. Corby] gi|295649279|gb|ADG25126.1| flagellar biosynthetic protein FliR [Legionella pneumophila 2300/99 Alcoy] gi|307610487|emb|CBX00059.1| flagellar biosynthetic protein fliR [Legionella pneumophila 130b] Length = 256 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 110/239 (46%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M + R+G ++ +P LS + +P ++++ F S V ++ + +NF Sbjct: 11 LMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENF--NG 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y ++ EL LG + G ++++ G +IS GL + + + + ++ L Sbjct: 69 LYLVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H + L++S+ +PIG+ ++ S + F + +S Sbjct: 129 YLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSVVWSTIMFSGWMFKEAVLISI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ ++S G++ ++ PQ+ ++ + P + +G + + + + + + S +G Sbjct: 189 PAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEMVESIKHG 247 >gi|78355425|ref|YP_386874.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217830|gb|ABB37179.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 261 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 1/239 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E +S L + R+ + LLP + P V+ M ++ L P L + L + Sbjct: 8 EASFLSFLLTLMRISLVVFLLPVFGGNSAPRLVKGALCMVLTLALWPHLSFSGSLLP-GH 66 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + ++ E+ +G + GLL+R + G+Q G ++ +G + + + + + Sbjct: 67 PFGIALMLAGEIIMGIMLGLLVRFFFAGIQTGGELLGFQMGFTMVSVADPLSGQSTSISS 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ LL V+D H + L S+ +P GQ + + + + F++ + + Sbjct: 127 HFMYMVSLLIFLVLDGHLVMLKGLTDSFALVPPGQLVFRHASLHNMLTLAGGMFVMAVHI 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++P + + +++ L+ + PQ+ + I P IG+G LF+ L I+ +Q L Sbjct: 187 AAPVMAALFLVELALALMGRAAPQMNLLMIGFPLKIGVGFLFMGLLFTIMRHQVQDFIL 245 >gi|324114207|gb|EGC08180.1| flagellar biosynthetic protein FliR [Escherichia fergusonii B253] gi|325497692|gb|EGC95551.1| flagellar biosynthesis protein FliR [Escherichia fergusonii ECD227] Length = 262 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P + +L + ++ + P L D+ F A Sbjct: 12 WLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPMLPPH-DVPIFSYAA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 71 VWVA--IQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 LDMLVLLLFLTFNGHLWLISILVDTFHTLPIGGEPLNSNAFLALTRAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G + + +I H F F Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEVF 248 >gi|54297700|ref|YP_124069.1| flagellar biosynthetic protein fliR [Legionella pneumophila str. Paris] gi|53751485|emb|CAH12903.1| Flagellar biosynthetic protein fliR [Legionella pneumophila str. Paris] Length = 256 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 110/239 (46%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M + R+G ++ +P LS + +P ++++ F S V ++ + +NF Sbjct: 11 LMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENF--NG 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y ++ EL LG + G ++++ G +IS GL + + + + ++ L Sbjct: 69 LYLVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H + L++S+ +PIG+ +I S + F + +S Sbjct: 129 YLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIVWSTIMFSGWMFKEAVLISI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ ++S G++ ++ PQ+ ++ + P + +G + + + + + + S +G Sbjct: 189 PAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEMVESIKHG 247 >gi|37680653|ref|NP_935262.1| flagellar biosynthesis protein FliR [Vibrio vulnificus YJ016] gi|37199402|dbj|BAC95233.1| flagellar biosynthesis pathway, component FliR [Vibrio vulnificus YJ016] Length = 260 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 94/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M++ ++ ++RL ++A ++ L+P + + ++ Sbjct: 11 WIANYFWPFTRISSMLMVMTVTGARFVSPRIRLYLSLAITLALMPAIPAVPEDLQLLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFLT-TFEQIVIGVAMGMVTQFIIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ ++ S+ T+PIG F L F L +S Sbjct: 130 FMFLSTMFFLATDGHLKMLQLVLFSFKTLPIGSGSLNAVDFRELALWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + +L G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLICWYILAGLYSHYELYWLQG 248 >gi|322432983|ref|YP_004210232.1| flagellar biosynthetic protein FliR [Acidobacterium sp. MP5ACTX9] gi|321165210|gb|ADW70914.1| flagellar biosynthetic protein FliR [Acidobacterium sp. MP5ACTX9] Length = 258 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 102/245 (41%), Gaps = 3/245 (1%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M I I+ + I R+ ++ P L + IP +++ +A + V+ P + ++ Sbjct: 1 MQIPFADIIQAFLAIGVRLSGLMLFAPFLGSAVIPARIKAVLVVALTFVIYPLVSRSLTP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q + + LV EL +G G+ V +Q G ++S +G +L + + + Sbjct: 61 QPLND---WPLLVFRELLVGVSIGIATSVVFEAVQMAGQILSIQMGYSLINILDPNTQVD 117 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 T + I +L +D H + A+ S+ +P G + + Sbjct: 118 TTVIAMFHQSIAMLIFLRLDVHLWLIRAIGNSFTYLPPGGAQLSRPFMFTLIGAGSAILS 177 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I +++++P L ++ +I +GLL K PQ+P+ + LG L S++ F Sbjct: 178 IGVQIAAPVLSATLLTDIVLGLLGKASPQLPLMLLGPAVKSLLGLAILFTSLKYWPDMFR 237 Query: 241 HSFLY 245 F+ Sbjct: 238 VLFID 242 >gi|268589972|ref|ZP_06124193.1| flagellar biosynthetic protein FliR [Providencia rettgeri DSM 1131] gi|291314689|gb|EFE55142.1| flagellar biosynthetic protein FliR [Providencia rettgeri DSM 1131] Length = 259 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 3/229 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F R+ + + P + +VR+ A +++ P L + + Sbjct: 11 LWLSQGFYPFIRLLALLGTAPFFNEKQAITKVRVALAFFVVLIVSPQL---PVVNIPLFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A +++ ++ +G GL +++ ++ G VI +GL+ T + L Sbjct: 68 AMGLWVIVQQMVIGVAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + +I LL D H + Y +V S+ IPI + F FV T F+ L L+ Sbjct: 128 IFNVITLLLFLAFDGHLWLIYIVVNSFELIPIQTAPLNRDGFWVFVQFANTIFINGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 PF+ +++ N+++G+LN++ PQ+ ++ + P + +G L L I I+ Sbjct: 188 LPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISIL 236 >gi|312115272|ref|YP_004012868.1| type III secretion system inner membrane R protein [Rhodomicrobium vannielii ATCC 17100] gi|311220401|gb|ADP71769.1| type III secretion system inner membrane R protein [Rhodomicrobium vannielii ATCC 17100] Length = 255 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 1/236 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFVNRA 67 ++S+FL++CR+G C+M+LP + + +P++VRL +A S+ + L + ++ + Sbjct: 13 VLSIFLVLCRIGGCLMVLPAIGGARVPVRVRLMVCLAISVAVAFALGNFESARESLSSTP 72 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+VE G V G++IR++ +F S A+GL + + D PL Sbjct: 73 SLVSLVLVETAKGLVIGIMIRLFFASFKFLAVAGSAALGLAMPVNAVEEDGETTPPLAEF 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H +V AL++SY +PIG + S V+ L+ ++ L++ + Sbjct: 133 VSLTAAFLFLATDQHLEVLKALLQSYTVLPIGTGIGLAPSLSGVVDTLRDACLVSLQVVA 192 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P L F + N+ G+LN++ PQ P YF+S P++IG G L + + F +F Sbjct: 193 PLLVFAFLVNLLFGVLNRIAPQTPAYFLSMPFVIGGGMLIFYFTAGEMFLLFMGAF 248 >gi|27365292|ref|NP_760820.1| flagellar biosynthesis protein FliR [Vibrio vulnificus CMCP6] gi|320155676|ref|YP_004188055.1| flagellar biosynthesis protein FliR [Vibrio vulnificus MO6-24/O] gi|27361439|gb|AAO10347.1| flagellar biosynthetic protein FliR [Vibrio vulnificus CMCP6] gi|319930988|gb|ADV85852.1| flagellar biosynthesis protein FliR [Vibrio vulnificus MO6-24/O] Length = 260 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 94/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M++ ++ ++RL ++A ++ L+P + + ++ Sbjct: 11 WIANYFWPFTRISSMLMVMTVTGARFVSPRIRLYLSLAITLALMPAIPAVPEELQLLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFLT-TFEQIVIGVAMGMVTQFIIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ ++ S+ T+PIG F L F L +S Sbjct: 130 FMFLSTMFFLATDGHLKMLQLVLFSFKTLPIGSGSLNAVDFRELALWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + +L G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLICWYILAGLYSHYELYWLQG 248 >gi|239817149|ref|YP_002946059.1| flagellar biosynthetic protein FliR [Variovorax paradoxus S110] gi|239803726|gb|ACS20793.1| flagellar biosynthetic protein FliR [Variovorax paradoxus S110] Length = 264 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 92/241 (38%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + Q+++ A ++ + P L + Sbjct: 14 AWLTAFLWPFVRMLALVSTAPVFGEPGVARQIKVAIAALLAVAIAPTLGPMPAVPVVSAG 73 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ ++ +G G +R+ + G I +GL+ + A + Sbjct: 74 GVW--IIVQQVLIGGAIGFTMRMVFAAVLAAGEYIGLQMGLSFASFFDPMAGGATMVVAR 131 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ +L +D H + AL +S+ T+PI + V+ F L L+ Sbjct: 132 LMHMLAILLFLAVDGHLLMLAALAESFHTLPIADAPLAAQGWMLLVSGGGRIFANGLMLA 191 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN+ PQ I+ + P + G L L + + F Sbjct: 192 LPLVTALLTLNLAMGILNRASPQFSIFAVGFPLTLLAGIGMLQLLMPQLGAFLEPRFAAA 251 Query: 247 F 247 Sbjct: 252 L 252 >gi|296133031|ref|YP_003640278.1| flagellar biosynthetic protein FliR [Thermincola sp. JR] gi|296031609|gb|ADG82377.1| flagellar biosynthetic protein FliR [Thermincola potens JR] Length = 259 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 99/236 (41%), Gaps = 1/236 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 +++ RV +++ P S +P QV+ + SI++ + + + Sbjct: 14 FLVVMARVSGVLLVAPVFSSRNLPAQVKAGLIVLISIIVFMAKHPQM-ATVPTSIIPFVL 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ EL +G + G + + G I IG + + ++ + + +I Sbjct: 73 LLISELVIGLIIGFASYLIFSVIYIAGQEIDMHIGFAMVNVVDPLSGISVPLVGTFKYMI 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L + ++ +F AL SY IP+ I + + M + ++L+ P + Sbjct: 133 AILVYLTTNSYNYLFAALFHSYDVIPLLGFQPNKAISTYLIGMFGNVLALSVKLAVPIVG 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +V +++G++ + VPQ+ ++ + P I +G + L L + ++ F + Sbjct: 193 ALLVAEVALGIIARTVPQMNVFLVGIPAKIVIGIILLVLILPFYMFFLDMLFETNY 248 >gi|254461302|ref|ZP_05074718.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium HTCC2083] gi|206677891|gb|EDZ42378.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium HTCC2083] Length = 253 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 117/234 (50%), Gaps = 4/234 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +S L++ RV + + LLP L + IP +V+L ++ S+++ P + D QN + A + Sbjct: 14 LSFILVLFRVAALVSLLPALGEASIPARVKLVMSVCMSLIVFPIVHDVS--QNSLAGANW 71 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + E+ +G G ++RV+ LQ GS+ + + L+ +G + + L +I Sbjct: 72 LSAAIAEVGIGLWFGFMLRVFVFCLQIAGSIAAQSTSLS--QILGSAGAEPLPALGHVIT 129 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 G+ + H L+ SY +P GQ + I + V + F + L++PF Sbjct: 130 TAGMTLALSLGLHVSAVQYLIGSYTILPTGQLPDISTISEAGVAQIAWGFQLAFSLAAPF 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++N+++G++N+ +PQ+ + F+ P + + L +SI +I+ ++ + Sbjct: 190 FILSLLYNLTLGVINRAMPQLMVAFVGAPVITAGALVLLAISIPVILKTWAGAL 243 >gi|86146124|ref|ZP_01064450.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218708835|ref|YP_002416456.1| flagellar biosynthesis protein FliR [Vibrio splendidus LGP32] gi|85836071|gb|EAQ54203.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218321854|emb|CAV17831.1| Flagellar biosynthetic protein fliR [Vibrio splendidus LGP32] Length = 260 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 91/237 (38%), Gaps = 1/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 WLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + V ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFLT-VFEQIVIGVAMGFVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + D H ++ +V S+ T+PIG + L F L +S Sbjct: 130 FMLLATMFFLETDGHLKMLQLVVFSFKTLPIGSGSLTSVDYRELALWLGIMFKTALAMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + N+S G++ + PQ+ I+ + + + +G L + + + ++ Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYILGGLFSHYELFWI 246 >gi|251772430|gb|EES52997.1| Flagellar biosynthesis protein FliR [Leptospirillum ferrodiazotrophum] Length = 269 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 93/231 (40%), Gaps = 1/231 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R ++ +P + +P +V+ A+A S +L P + ++ A Sbjct: 19 FVLILARTSGVLIAMPAFNSRAVPTKVKALVAVALSALLFPVVGGRVNFHETGYDALLFS 78 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E +G G + + G + G + + L + I Sbjct: 79 -ILTEFVVGVSMGFAAYLVFAAVALAGQLAGVQAGFGIVDVINPLGVAEVPLLGNFQTQI 137 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + + + +AL +SY + +G G+ F+ ++ + L L+SPF+ Sbjct: 138 AFLIFLATNAQYAMLWALARSYDVVGVGGASFSGSYFAGIAHLFGRMMSLGLVLASPFIV 197 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ N+ +G L+K++PQ+ + + P ++ G + L + + + Sbjct: 198 GGVILNLVLGFLSKMMPQMNLISLGLPVMVLGGLVLTILGLPFLGTVLGEA 248 >gi|149188097|ref|ZP_01866392.1| flagellar biosynthesis protein R [Vibrio shilonii AK1] gi|148838085|gb|EDL55027.1| flagellar biosynthesis protein R [Vibrio shilonii AK1] Length = 260 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 90/238 (37%), Gaps = 1/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ +++ ++RL +A ++ ++P + + Sbjct: 11 WISNYFWPYVRISAMLMVMSVTGANFVSPRIRLFLGLALTLAVMPSIPAVPQTIELFSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + V ++ +G G+ G ++ L + + ++ L L Sbjct: 71 GFLT-VAEQILIGTAMGMTTVFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F L F L ++ Sbjct: 130 FMFLATMFFLATDGHLKMIQLVVMSFKTLPIGSGHLSSADFREMAGWLSIMFQTALSMAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + N+S G++ + PQ+ I+ + + + +G + + + + +L Sbjct: 190 AGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLIGLMICWYIMAGLYSHYQLYWLE 247 >gi|209963537|ref|YP_002296452.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW] gi|209957003|gb|ACI97639.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW] Length = 251 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 113/235 (48%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + L++ RVG+ + +LPG +PM+ R+ A+A ++ L + + Sbjct: 11 IYGVLLVLVRVGAALSMLPGFGEMAVPMRTRMAAALALALALAAAV-PGLPAVPPAGPGE 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E G V G+ R+ LQ G +I+ + L+ ++ + + L + + Sbjct: 70 LLRHIVGEAMAGAVIGIGARILFAALQIAGQIIAQSASLSNIFALPGTGFEGGSVLGAYL 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + GL+ ++V D HH + AL+ SY +P + ++ + +F + ++ S+P Sbjct: 130 MMGGLVLVFVTDLHHAMIRALLDSYQLMPAATIPDPRSLGKLTAETVNLSFRLAVQFSAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 FL + +N+ +GL+N+ +P ++F+ P I G + L L I+ F +F Sbjct: 190 FLLLGLAYNVGLGLVNRAMPHFAVFFVGLPVSILGGFIVLALVAAAILGGFLDAF 244 >gi|206603140|gb|EDZ39620.1| flagellar biosynthesis protein, FliR [Leptospirillum sp. Group II '5-way CG'] Length = 262 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 102/236 (43%), Gaps = 2/236 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ ++ RV ++ +P LS +P++++ A+A + ++ P + + + Sbjct: 10 TLLLYVWVLARVSGLVVSMPVLSGKAVPVRIKALIAVALAFLIEPVVLGNVSPPRLFSA- 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ E F+G G + + F G + +G L + L + Sbjct: 69 -WLGSLVTEFFVGVALGFSSYLVFAAVSFAGELAGVQVGFGLVDVINPLGLAEVPLLGTF 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L H + +AL +SY +P G+ + ++ + ++ + L++ Sbjct: 128 QNSVAFLVFLASGTHEALIWALGRSYAVVPPGEGRFRTIFYEGYLGVFAHFMVLGITLAA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 PFL IV N+++G L++++PQ+ + + P L+ G L LS+ + SF Sbjct: 188 PFLVGGIVLNLAMGFLSRMMPQMNLISVGFPVLVLGGLGLLILSLPFLGSVLEDSF 243 >gi|300717243|ref|YP_003742046.1| flagellar biosynthesis protein [Erwinia billingiae Eb661] gi|299063079|emb|CAX60199.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661] Length = 261 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + LF + RV + IM P LS I +V++ + + VLLP L T + Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKSISKKVKIGLGVMITYVLLPSLPPT---NVTLFSV 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G G ++ ++ G VI +GL+ T + L L Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPASRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + + S+ T+PIG + GN F + F+ LRL+ Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVADSFHTLPIGGDPINGNAFLALTKAASLIFLNGLRLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F Sbjct: 189 PLITLLLTLNLALGLLNRVAPQLSVFAIGFPVTLSIGIIFISLMMPLLAPFCEHLFSEVF 248 >gi|221639479|ref|YP_002525741.1| Flagellar biosynthetic protein FliR [Rhodobacter sphaeroides KD131] gi|221160260|gb|ACM01240.1| Flagellar biosynthetic protein FliR [Rhodobacter sphaeroides KD131] Length = 269 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 95/230 (41%), Gaps = 2/230 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F+ R+G+ ++ P ++P+ VR+ + ++ +L + + + L Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRIVATVILTLPVLGRV--ELPPPEALASLAAIPL 80 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 +M E+ +G GL++ + G I++ GL + S + + G+ Sbjct: 81 MMQEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAGGQTPVVAQIFGLAL 140 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +D H L++SY ++P G G + + F++ L++ P + Sbjct: 141 TTVFLALDGHLTALDILLRSYESLPPGAPFAPGRFLEAGIGAGGRMFLLGLQIMMPVVAA 200 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 I+ N++IG++ + PQ+ ++ P + + L L+ + FS Sbjct: 201 LILINVTIGIVTRSAPQLNVFSFGFPVTMSATLILLFLTAPGTMGAFSGL 250 >gi|54294674|ref|YP_127089.1| flagellar biosynthetic protein fliR [Legionella pneumophila str. Lens] gi|53754506|emb|CAH15990.1| Flagellar biosynthetic protein fliR [Legionella pneumophila str. Lens] Length = 256 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 110/239 (46%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M + R+G ++ +P LS + +P ++++ F S V ++ + +NF Sbjct: 11 LMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENF--NG 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y ++ EL LG + G ++++ G +IS GL + + + + ++ L Sbjct: 69 LYLVYLIQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H + L++S+ +PIG+ +I S + F + +S Sbjct: 129 YLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIIWSTIMFSGWMFKEAVLISI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ ++S G++ ++ PQ+ ++ + P + +G + + + + + + S +G Sbjct: 189 PAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEMVESIKHG 247 >gi|161502897|ref|YP_001570009.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864244|gb|ABX20867.1| hypothetical protein SARI_00956 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 264 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAAL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 72 W---LAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV ++ T+PIG N F + F+ L L+ Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALAKAGGLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 189 PIITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248 >gi|163801857|ref|ZP_02195754.1| flagellar biosynthesis protein R [Vibrio sp. AND4] gi|159174365|gb|EDP59169.1| flagellar biosynthesis protein R [Vibrio sp. AND4] Length = 260 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 92/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL +A + + P + ++ Sbjct: 11 WIANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFR 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ + L L Sbjct: 71 GFMT-IAEQIIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQSTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMFLVTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNALDFRELAGWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G LF + + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFTFALIIGLLFCWYILAGLYSHYELFWNVG 248 >gi|167623391|ref|YP_001673685.1| flagellar biosynthesis protein FliR [Shewanella halifaxensis HAW-EB4] gi|167353413|gb|ABZ76026.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis HAW-EB4] Length = 265 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 91/235 (38%), Gaps = 2/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + R+ S M++ + P +VRL ++A ++ + P L + F A Sbjct: 12 IAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVAVTVAVAPVLPAMPTIDLFSLSAA 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ +G G + TG +I L + + S + + Sbjct: 72 FVTA--QQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + +D H + ++ S+ +IP+ + + F + F L +S Sbjct: 130 LLLTTVIFLAVDGHLLLIKMVIASFDSIPVSMQGLSLVSYRLFTEFVGYMFGAALTMSLS 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + N+S G++ + PQ+ I+ I P + G L L++ I+ F + Sbjct: 190 AIVALLTINLSFGVMTRASPQLNIFSIGFPVTMIAGLFILWLTLSPIMTHFDEVW 244 >gi|157363488|ref|YP_001470255.1| flagellar biosynthetic protein FliR [Thermotoga lettingae TMO] gi|157314092|gb|ABV33191.1| flagellar biosynthetic protein FliR [Thermotoga lettingae TMO] Length = 258 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 104/236 (44%), Gaps = 3/236 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ L+V R + P + ++P+QV++ + S +LP + + I L V Sbjct: 8 ETKFLAWVLVVTRNAGMFTIAPFFADWFVPLQVKVLLVVFLSWTVLPSINEVIPLHTPVA 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + S ++ +G G L + + L G V T +G L + Sbjct: 68 QIVLS--MLSNYVIGLTIGFLALLPVIALSIAGEVFGTQMGFALSSVFDP-QREEVPIHG 124 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ + GL + H ++ A+V S +IP+ + L N S + F I +++ Sbjct: 125 ELLYVFGLYIFVALKGHLLIYQAVVDSLNSIPVSKTLIDFNFVSVLTEKISEMFSIAMKI 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + F V +IS+G++++LVPQ+ ++ + P I +G + + I + FS Sbjct: 185 GMPMIGFMFVTSISLGIISRLVPQMNVFMVGMPLKILVGFILMVGMIPVWADVFSQ 240 >gi|326796453|ref|YP_004314273.1| flagellar biosynthetic protein FliR [Marinomonas mediterranea MMB-1] gi|326547217|gb|ADZ92437.1| flagellar biosynthetic protein FliR [Marinomonas mediterranea MMB-1] Length = 260 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 4/238 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I +S L RVG+ +M LP + +QVR+ FA SI + P + Sbjct: 12 ITISFLLPFFRVGAFLMALPLFGSRLVSVQVRILFAFVISIAITPIVDI---PSFDPISV 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L+ +L G V G +I + G + + GL S ++ + + Sbjct: 69 AFIPLIAEQLLAGFVMGFVITILFQAFSLAGQLAAMKAGLGFAMSNDPANGVTVATMGQY 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + LA + HH +F +V+S+ PIG V + F L + Sbjct: 129 FLSMVGLAFVGTNGHHVMFEFIVESFDYWPIGSGFALER-LWDVVQLGGWMFEKALLIVL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P ++ N+S G++ K PQ+ I+ + P ++ LF + + + + F Sbjct: 188 PLTVAVLIMNVSFGVVAKASPQLNIFALGFPVILLFSLLFFWMMLGDFLDIYRLFFED 245 >gi|318605251|emb|CBY26749.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp. palearctica Y11] Length = 260 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T + + F + R+ + I P LS I +V++ A+ + ++ P L Sbjct: 6 TTQLSVWVSQYFWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSLPPVNIPL 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + ++ +G GL ++ ++ G VI +GL+ T S Sbjct: 66 VSSGALWVAG---QQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNM 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L L+ ++ +L D H + L S+ T+PI E GN F + FM Sbjct: 123 PVLARLLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSWIFMN 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H Sbjct: 183 GLMLALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEH 242 Query: 242 SFLYGF 247 F F Sbjct: 243 LFGEFF 248 >gi|197285501|ref|YP_002151373.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] gi|227355992|ref|ZP_03840384.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] gi|194682988|emb|CAR43426.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] gi|227163980|gb|EEI48882.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] Length = 260 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 F R+ + P S P + R+ A + ++ P L + Q + Sbjct: 16 FFWPFVRILALFSTAPLFSEKQTPKKFRIGLAFLTTALIAPGLPQS---QVPLFSIMAFW 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ ++ +G + GL +++ ++ G VI +GL+ T + S L + ++ Sbjct: 73 VLIQQILIGTILGLSMQLAFASVRHAGEVIGLQMGLSFATFVDPSGGPNMPILARIFNML 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L V D H + L ++ +PIG + + V T F+ + L+ P + Sbjct: 133 TMLLFMVFDGHLWLLSVLADTFYVVPIGNQTFNSLGILTLVQSGGTIFINGMMLAMPLIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +V N+S+G+LN++ PQ+ ++ + P + +G L L L + + F F Sbjct: 193 LLLVLNLSLGILNRMTPQLSVFVVGFPLTLTIGMLALSLIMPALPVFTERVFSDTF 248 >gi|269792926|ref|YP_003317830.1| flagellar biosynthetic protein FliR [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100561|gb|ACZ19548.1| flagellar biosynthetic protein FliR [Thermanaerovibrio acidaminovorans DSM 6589] Length = 259 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 104/232 (44%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ L RV +M P + P+ VR+ A+ S++++P + + + Sbjct: 9 VLAVHLLCSIRVLGLLMSSPVFMLPSWPIPVRMWLALMLSLLMVPSVDPQVPMVLLATWT 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + E +G + GLL + LQ +G + + +GL + T + L + Sbjct: 69 GMAIFAVREFLVGAMVGLLSGLPLYALQLSGYLEGSQMGLAMATLFDPTQEGNVALLGQV 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++G+ L + H + A+ +S+ IP+G+ + F + F++ +R S Sbjct: 129 KYLLGIWFLLHWNGHLVLIEAINRSFSLIPLGKGVLDLPPGQPFGRWITDLFLLAIRFSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 P + ++ ++ +G + + VPQI ++ + P IGLG + L I +V F Sbjct: 189 PIMGALLLADVGLGFVARTVPQINVFILGIPLKIGLGLILLMAVIPFVVDLF 240 >gi|15615003|ref|NP_243306.1| flagellar biosynthesis protein FliR [Bacillus halodurans C-125] gi|10175060|dbj|BAB06159.1| flagellar protein required for flagellar formation [Bacillus halodurans C-125] Length = 258 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 104/243 (42%), Gaps = 7/243 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ L+ R+ + +M +P S IP ++ A+ + +L L I + Sbjct: 7 LLPMFLLVFVRMLAFLMTMPLFSYRNIPAMFKVGIALFLAWILTFSLEPEI----ILFDG 62 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y L+M E+ +G + GL+ V +Q G+ I IG + + + S Sbjct: 63 TYVILIMKEVLVGLMVGLIAMVLLYAIQAAGAFIDVKIGFLIANIVDPQTGAQSPLIGSY 122 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL---NFGNIFSSFVNMLQTTFMIMLR 184 + LL + + HH + + SY IP+ Q + N+ L T F+I + Sbjct: 123 LYTFALLFMLATNGHHLLIDGMYYSYQFIPLNQPFLNVSDENMIELIATTLNTMFIIAFQ 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ P + + ++++G++++ VPQ+ ++ + P I +G L + + + S+ F Sbjct: 183 MAFPLVGSLFLVDVALGMVSRAVPQMNVFVVGMPLKILVGLPLLMIFMGVFFMSVSYLFE 242 Query: 245 YGF 247 Sbjct: 243 RML 245 >gi|114705550|ref|ZP_01438453.1| flagellar biosynthesis protein [Fulvimarina pelagi HTCC2506] gi|114538396|gb|EAU41517.1| flagellar biosynthesis protein [Fulvimarina pelagi HTCC2506] Length = 250 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M+ + + + FL+ CR+G+C+MLLPG S + IP QVRL A A S+ L P L I+ Sbjct: 1 MSEAASAFVFAHFLVFCRIGTCLMLLPGYSSNRIPAQVRLFLAFAISLALSPLLLPLIEP 60 Query: 61 QNF-VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + A +LV E+ G GLL R + + L F G VI+ AIG+ Q + + Sbjct: 61 LVVGASDARRLELVFSEMMTGFFIGLLGRCFLIALSFVGYVIANAIGMG-QQLGPVYEDS 119 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 + + +LI + + +++ + H ++ ALV SY +P + + + L+ TF Sbjct: 120 PDPAIGTLITMTATVLIFITNLHAEIARALVASYTALPAAEGFGIQASLVNLTDNLKLTF 179 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ LR++SPF+ + I+ N +IGL NKL PQIP+YF+S P+++ G + I + F Sbjct: 180 VLCLRIASPFVLYAIIVNFAIGLANKLTPQIPVYFVSLPFVLAGGLILFGYVIGDFLIIF 239 Query: 240 SHSFL 244 ++F Sbjct: 240 MNAFE 244 >gi|332531135|ref|ZP_08407049.1| flagellar biosynthetic protein FliR [Hylemonella gracilis ATCC 19624] gi|332039420|gb|EGI75832.1| flagellar biosynthetic protein FliR [Hylemonella gracilis ATCC 19624] Length = 255 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 92/239 (38%), Gaps = 2/239 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L RV + P S P++ R+ A+ ++ L + +N Sbjct: 11 AWLTPLLWPFLRVLAVFTSAPIFSTRAFPVRARILLALLVAVCAQATLPPMPVIS--LNS 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ++ +G G ++R+ + G VI +GL + + S + Sbjct: 69 PEALGVTVQQVAIGLAIGFVVRLVFASFELAGEVIGFQMGLGFASFFDPALSGQSNAVAR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G I L V++ H V A+ S+ P+ + + F L ++ Sbjct: 129 FFGYIAALLFVVLNGHLLVLMAVTHSFVAFPVSPDFLSNVRSMQIHLLGGELFASALWIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + + N+++G+++++ PQ+ ++ I P I +G + L ++ ++ F Sbjct: 189 LPMIGLMLFANLALGIISRVAPQMNVFAIGFPLTIFVGLIGLTATLPMLDGPFQSLLER 247 >gi|170725985|ref|YP_001760011.1| flagellar biosynthesis protein FliR [Shewanella woodyi ATCC 51908] gi|169811332|gb|ACA85916.1| flagellar biosynthetic protein FliR [Shewanella woodyi ATCC 51908] Length = 261 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 92/238 (38%), Gaps = 2/238 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + S + RV S +M + + + P+++RL +M + + P L ++ F + Sbjct: 8 IASYMWPLFRVASMLMAMAIVGANTTPVRIRLLLSMTITFAIAPVLPPMENVDLFSLSSG 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + + + G + + TG +I L + + S + + Sbjct: 68 FIIFQQIIIGV--AMGFVTLLVMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNFF 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + +D H + LV S+ TIPI + + F L +S Sbjct: 126 LLLTTMIFLAVDGHLVLIRMLVVSFDTIPISDQGISIASYKLLAEWGAYMFGAALTMSMT 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ N+S G++ + PQ+ I+ I P + G L L++ I+ F + Sbjct: 186 AIVALLMINLSFGVMTRASPQLNIFAIGFPVTMVTGLFILWLTLTPIMEHFGAVWRDA 243 >gi|323490156|ref|ZP_08095376.1| flagellar biosynthesis protein FliR [Planococcus donghaensis MPA1U2] gi|323396204|gb|EGA89030.1| flagellar biosynthesis protein FliR [Planococcus donghaensis MPA1U2] Length = 259 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 6/236 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L++ R+ S +L P SM +P Q ++ A + V + L + + + Y Sbjct: 11 FLLMLVRLTSFFLLAPVFSMRGVPTQFKVGIAAFLAFVAVSTLPIG---ETILLDSSYIL 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ EL G G + +Q G+ I +G ++ + + ++ Sbjct: 68 LIIKELATGLALGFTAALVLYTVQIAGAFIDFQMGFSMANVLDPQTGAQVPIIGHFKYMM 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI---GQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 LL L ++ HH + +++S P+ + G+I ++ FMI L+++ P Sbjct: 128 ALLFLLTVNGHHLMLDGVMQSLRVFPVERLAISVEAGDIAQFMTSLFVEMFMIALQIALP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + +I++G+L K VPQ+ I+ + P I +G + L L++ + Y F Sbjct: 188 IVGALFLVDIALGILAKTVPQLNIFAVGLPLKIFVGFIMLFLTMPVFFYILQILFE 243 >gi|77918768|ref|YP_356583.1| flagellar biosynthetic protein FliR [Pelobacter carbinolicus DSM 2380] gi|77544851|gb|ABA88413.1| flagellar biosynthetic protein FliR [Pelobacter carbinolicus DSM 2380] Length = 258 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 97/235 (41%), Gaps = 1/235 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + RV S LP + P+++R+ ++ ++V+ P L + + Sbjct: 11 IQGFLVCAARVTSLFSALPIFGSAQTPVRIRIALSVTIALVVYPLLPELLPATPLT-PIG 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ E +G + G + R+ + ++F GS+I +G + ++ Sbjct: 70 LGILIAQETMVGLMIGFIARLVFIAVEFGGSIIGYQMGFAAANVFDPQSQHQVSLISQFQ 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L D HH + SY +P G G + F + ++ S+P Sbjct: 130 NVFAILLFLAFDVHHLFLRLIADSYRLLPAGDAKLGGEAVLFLSRLTGEMFTLAVKFSAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L ++ + +G+++++ Q+ + +S P IG+ L + L+++++ F Sbjct: 190 VLIVLLLSGLVLGIMSRMFQQLNAFMLSFPINIGVSFLSIGLTMQLLAVMLQREF 244 >gi|114566402|ref|YP_753556.1| flagellar biosynthetic protein FliR [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337337|gb|ABI68185.1| flagellar biosynthetic protein FliR [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 253 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 1/239 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + S F ++ R+ + P S +P +VR + + L F+ +N Sbjct: 5 LESFFFLLARLSGLFITAPIFSSRMMPGRVRALIVIMLAATLAYFV-PVEYSRNINTPGL 63 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + VE+F+G G +I +Q +G ++ +G ++ + + + Sbjct: 64 FIAALAVEIFIGYTIGFVIYAVLATIQLSGQLMDMLMGFSIVNVVDPQSGTQIPLMGNFT 123 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + LL ID HH + AL +SY +P+ G V + F++ +++++P Sbjct: 124 QALALLTYLAIDGHHYLLQALAQSYAIVPVMSAHLPGGFLELLVEVGTYIFVVAVKIAAP 183 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L + ++++G + + VPQ+ ++ + P I LG + L L + I ++ ++ F F Sbjct: 184 MLVAILTSDVAMGFIARTVPQMNVFLVGLPLKIFLGLITLLLLLPIYLWVYNVLFAEFF 242 >gi|145297439|ref|YP_001140280.1| lateral flagellar biosynthetic protein LfiR [Aeromonas salmonicida subsp. salmonicida A449] gi|142850211|gb|ABO88532.1| lateral flagellar biosynthetic protein LfiR [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 103/236 (43%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + ++P IP QVRL FA S+++ P L + + F Sbjct: 14 AWLGQWWWPFIRIATAFWVMPVFGDGRIPPQVRLLFAFIISLLIAPMLKEMPVVDPFSTG 73 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L + +L G + GL +++ + + G ++S +GL + S+ + ++ Sbjct: 74 AL--VLTVEQLLFGLLFGLCVQMLFMIMTMAGQILSMQMGLAMAVMNDPSNGDSAPIVSQ 131 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ I L ++ H LV+S + P G L+ + + + L L+ Sbjct: 132 LMLIFCSLLFLGLNGHLVTLDVLVQSLRSWPPGSSLDLLD-MKGVIGLFGWCIGAALILT 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ N++ G++N+ P + I+ + P + LG + + +SI + ++ Sbjct: 191 LPAVVAMLMVNLTFGVMNRTAPSLNIFSLGFPMTLLLGLVTMAISISGVPARYLDL 246 >gi|315498432|ref|YP_004087236.1| flagellar biosynthetic protein flir [Asticcacaulis excentricus CB 48] gi|315416444|gb|ADU13085.1| flagellar biosynthetic protein FliR [Asticcacaulis excentricus CB 48] Length = 268 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 117/238 (49%), Gaps = 1/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + +I RVGS +L+PGL +P ++RL FA F+++L+P + + Sbjct: 23 VVFTAMMIFVRVGSVAILIPGLGDQAVPPRMRLSFAFVFTLMLVPVVQSQMPALPP-KLG 81 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ E +G + G+L+R + L G V+S L+ + + + T + + Sbjct: 82 AMAGLIIHEAVIGLMLGMLMRTFLGALAIAGEVVSLQTTLSFAQTANPAQAQPSTSIGTF 141 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++GL+ ++ + HH + SY P + + G+ + + TFM+ +++++ Sbjct: 142 LAMLGLVLIYATNLHHLFIAGMRDSYWVFPPMRPVMVGDATQLMIRTVGDTFMLAIQMTT 201 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P L F ++ N++ G + +++P PI+F TP + LG LS+ F + Sbjct: 202 PILVFGLIINVAAGFIGRIMPAFPIFFAVTPVSVLLGLAIFALSLGGTGLVFLQHYEE 259 >gi|238758101|ref|ZP_04619281.1| Flagellar biosynthetic protein fliR [Yersinia aldovae ATCC 35236] gi|238703639|gb|EEP96176.1| Flagellar biosynthetic protein fliR [Yersinia aldovae ATCC 35236] Length = 260 Score = 138 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T ++ F + RV + I P L+ I +V++ + + ++ P L + Sbjct: 6 TTQLSALVSQYFWPLIRVLALISTAPILNEKQINRKVKIGLGVLITFLIAPSL---PPVN 62 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + ++ +G GL ++ ++ G VI +GL+ T S Sbjct: 63 IPIASIGAIWVAGQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNM 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L L+ ++ +L D H + L S+ TIPI E GN F + + FM Sbjct: 123 PVLARLLNLLAMLLFLSFDGHLWLISLLADSFHTIPIQLEPLNGNGFLALTQVGSLIFMS 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + + N+++G+LN++ PQ+ ++ I P + +G + + L + ++ H Sbjct: 183 GLMLALPMITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTIGIISMGLMMPLLAPFAEH 242 Query: 242 SFLYGF 247 F F Sbjct: 243 LFGEIF 248 >gi|88813213|ref|ZP_01128453.1| Flagellar biosynthesis pathway, component FliR [Nitrococcus mobilis Nb-231] gi|88789535|gb|EAR20662.1| Flagellar biosynthesis pathway, component FliR [Nitrococcus mobilis Nb-231] Length = 258 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 98/242 (40%), Gaps = 3/242 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + RV + ++ P S IP+++R+ + ++ +LP + + L Sbjct: 10 AWLGQFLWPFIRVSAVLLTAPLFSNILIPVRLRVLLGVGLTVAVLPAVGNVPQLDPLSPE 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ +G GLL+ + + G +S +GL T + ++ + ++ Sbjct: 70 GVLVA--GQQVLIGAAIGLLLAMAFQAVAIAGETLSITMGLGFATMISPQTGVSSSVISQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+ +L + H + L +S+ T+PI G + V F + L+ Sbjct: 128 FLLILAMLLFLAVGAHLMLIQLLAESFRTLPIAASGLGGQDVYALVGWAGEMFAGGVLLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGS-LFLCLSIEIIVYQFSHSFLY 245 P + ++ N+ IG++ + PQ+ I+ + P + G + L + + + + + Sbjct: 188 LPAVAVLLIVNLIIGVMTRTAPQMNIFSVGLPLTLLAGFVVVLIILLPALPEHMTDLWRS 247 Query: 246 GF 247 F Sbjct: 248 AF 249 >gi|144900465|emb|CAM77329.1| Type III secretion system inner membrane R protein [Magnetospirillum gryphiswaldense MSR-1] Length = 254 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 1/239 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + FLI R+G+ +M++PGL S +P +VRL FA+A S+VLLP L + + Sbjct: 10 IYRFFLIFTRIGAALMIVPGLGGSLVPTRVRLIFALAMSLVLLPVLGGGLPPLP-NRLSN 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ E +G G+L + L G+ I +GL S + L + Sbjct: 69 LFFLIGSEAMIGVYLGILTQTLMSTLHVAGTFIGFQVGLTNAFSYDAVAEQQSSTLTAFF 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L+A++V + HH + A+ SY + GQ L G+ + +L +F L+L++P Sbjct: 129 TNTALIAIFVTNLHHLMIEAIAGSYAVMVPGQPLPLGDFAETLSKLLSASFNFALQLAAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L F I++N+++GL+++L PQI ++FI+ P + G + +++ +I+ F F G Sbjct: 189 LLAFGIIYNVALGLMSRLSPQIQVFFIALPLQVMAGLWMMMVALPLIIILFLRWFQDGL 247 >gi|163789633|ref|ZP_02184071.1| flagellar biosynthetic protein fliR/B [Carnobacterium sp. AT7] gi|159875165|gb|EDP69231.1| flagellar biosynthetic protein fliR/B [Carnobacterium sp. AT7] Length = 250 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 103/234 (44%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 I + ++ LI RV S I++ PG S +P ++ +M ++ + ++ Sbjct: 3 IQLQTIILIFIRVTSFIVVSPGFSFKGLPSVAKIALSMGITLAAYSAV---PVMEQEAGT 59 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ LV+ E+ LG G + +++ ++ G+ + +G ++ S + + Sbjct: 60 VLFAVLVIKEVLLGIALGFITKLFFTAVEIAGNFVDFQVGFSMGAVYDPSMGINVSYYGK 119 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + + ++ + HH V +LVKS+ T+PI + +L F I ++ Sbjct: 120 IYYWLSMCVFYLTNLHHVVIKSLVKSFTTVPISNSNLGDFGVEGMMKLLGIIFEIAFNIA 179 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ + +GL+++ VPQI + + P I + + + + +V Sbjct: 180 VPMMIVALLTEVILGLISRSVPQINVLILGMPLKIVASFVMILVLLPTLVKNIQ 233 >gi|85859182|ref|YP_461384.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] gi|85722273|gb|ABC77216.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] Length = 259 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 2/236 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSM-SYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L I RV S I+++P IP+ ++ ++ + +L PF+ Q + Sbjct: 11 IACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMDFGFQ-LMELT 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +++ E+ +G + G + R G+QF G +I +G ++ + S + ++ L Sbjct: 70 PMVVIMIGEILIGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTSTQVSLISQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L ++ HH A+ +S+ I Q + + + F+I +++S+ Sbjct: 130 KYFLAMLVFLAVNAHHIFLSAMAESFVRISPMQFHLTERVIAPLCLLSMEVFIIAVKISA 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + I ++++G++ + VPQI I+ + P I LG +FL LS I V F Sbjct: 190 PVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNYCIRLF 245 >gi|315179474|gb|ADT86388.1| flagellar biosynthesis protein [Vibrio furnissii NCTC 11218] Length = 260 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 95/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 FIANYFWPYARISAMLMVMTVTGARFVSTRIRLYLGLAITFAVMPAIPAVPPDLELLSFN 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFLT-TLNQIIIGVAMGMVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L V D H ++ + +V S+ ++PIG F L T F + L +S Sbjct: 130 FMFLATLFFLVSDGHLKMIHLVVLSFKSLPIGTHSLTAVDFRELALWLGTMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIVALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLCWYILSGLFSHYELFWAEG 248 >gi|182680488|ref|YP_001834634.1| flagellar biosynthesis protein FliR [Beijerinckia indica subsp. indica ATCC 9039] gi|182636371|gb|ACB97145.1| flagellar biosynthesis protein FliR [Beijerinckia indica subsp. indica ATCC 9039] Length = 251 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 128/244 (52%), Gaps = 1/244 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59 MT SP +++ + ++ CR+G C+MLLPG S IP++VRL A+A ++ L PFL + + Sbjct: 1 MTFSPSHLVLFVTILFCRIGFCVMLLPGFSSPRIPLKVRLALALALTLTLTPFLAEEVRP 60 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + L++ E +G G R++ L+ T + ++ IG+ +++ Sbjct: 61 ALRDETPLLLAHLMISESLMGFFIGFSARIFFAALETTANAMAMMIGMTNVLGAPVNEEE 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 L++L+ + + L+++D H ++ LV SY +P+ N + L F Sbjct: 121 PLPVLSALVTLSATVLLFIMDLHWEILRGLVGSYKAVPVIDHFNARLDLVQVADSLSKAF 180 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + RL+ PF+ F I+ N+++GL+NK++PQIPIYFI+ P+++ G + + F Sbjct: 181 FLSFRLAGPFIIFSIIVNLAVGLINKMIPQIPIYFITMPFVLIGGLFLFFATSTQLFELF 240 Query: 240 SHSF 243 F Sbjct: 241 MFGF 244 >gi|331006681|ref|ZP_08329959.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC1989] gi|330419513|gb|EGG93901.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC1989] Length = 258 Score = 137 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 95/239 (39%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + FL + R+ S M P S + ++RL ++ +I+++P L + Sbjct: 12 WVSQYFLPLVRLASFFMAAPIFSTRIVSTRIRLILTLSITILIVPILPPAPLVSGI--DV 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V ++ +G G +V G I+ +GL + S+ ++ T ++ Sbjct: 70 SMFIIVAQQILIGVALGFTFQVVFQLFVLAGQYIAMKLGLGFASMNDPSNGVSVTIVSQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L + H + LV S+ IPIG + V + F L +S Sbjct: 130 YLLTTTLLFLSFNGHLILIQILVDSFTAIPIGTVGISTSNIYRIVELGGWMFGSALVISM 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P L +V N++ G++++ PQ+ I+ + P + G + + + + F G Sbjct: 190 PVLTALLVVNVAFGVMSRSAPQMNIFAVGFPITLIFGLMIMWVGFSAFLSSFELFIDEG 248 >gi|268316330|ref|YP_003290049.1| flagellar biosynthetic protein FliR [Rhodothermus marinus DSM 4252] gi|262333864|gb|ACY47661.1| flagellar biosynthetic protein FliR [Rhodothermus marinus DSM 4252] Length = 258 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 102/234 (43%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ + L+ R+ ++ P IP++VR+ A+ + L + + + Sbjct: 9 LLRVLLVFVRISGVLLAAPFFGQLSIPVRVRVLLAVLLAYSLSGLVAGPLP-PHADQALG 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + V +E G + G + ++ G +I IGL++ + A PL L+ Sbjct: 68 FIVAVALEALTGLLLGFAAHMIFWAVEMAGDLIGFQIGLHMAQVFNPLEGHAANPLGRLL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L+ ++D HH V ALV+S+ +P+ N V + ++ LRL++P Sbjct: 128 SLAALMIFVLLDGHHVVLRALVESFRVVPLAGA-NLAASQPLLVQWVWDFLVLALRLAAP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F+ ++ ++++G+ ++VPQ ++ I+ P + +G + + Sbjct: 187 FMVTILLIDVALGIFARVVPQADLFSIALPLKLLVGLALALFYMRAFFPLMATL 240 >gi|154253016|ref|YP_001413840.1| flagellar biosynthesis protein FliR [Parvibaculum lavamentivorans DS-1] gi|154156966|gb|ABS64183.1| flagellar biosynthetic protein FliR [Parvibaculum lavamentivorans DS-1] Length = 253 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 1/237 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L+ R+ + IML+P L + IP QVRL A+ S V++P + + Sbjct: 10 TAFTFMLVFSRLAAMIMLMPALGEASIPAQVRLMLALLLSFVMMPLVAGSYGAIPATVPG 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V E+ +G G R+ L G++I+ + L+ ++ S + + Sbjct: 70 -LVFIVCSEIAVGLFIGTAARLIMSALHVAGNIIAAQMSLSFAMNVDPSQGQQGVLIANF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++G+ ++ + H + A+ SY G+ + G+ + V M+ +F + L+L++ Sbjct: 129 LSLLGVTLIFATNLDHVLIAAMRDSYELFKPGEPIPVGDFLAMAVKMVSGSFRLGLQLAA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PFL F ++F + IG+L++L+PQI I+FI+ P I LG + L L + ++ F F Sbjct: 189 PFLVFGLIFYLGIGILSRLMPQIQIFFIAMPANIALGFILLLLLLGALMTWFLQGFE 245 >gi|297569687|ref|YP_003691031.1| flagellar biosynthetic protein FliR [Desulfurivibrio alkaliphilus AHT2] gi|296925602|gb|ADH86412.1| flagellar biosynthetic protein FliR [Desulfurivibrio alkaliphilus AHT2] Length = 263 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 2/238 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +M + +++ RVG + L+P LS +P QV++ + S+VL P + Sbjct: 14 LMRVLIVMTRVGPLLFLMPVLSARGVPAQVKILLVVMTSLVLAPVV-PVSSADLPDTAVG 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + +E+ + L R ++ G V+ +G+ + M +P+ L Sbjct: 73 FGVFAALEITFAAILALFARFVFSAVETAGQVVGVQMGMGMAGVMDPQFGNQVSPVGMLW 132 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRLSS 187 + +L ID HH F A+V+SY + GQ ++ + ++ F++ +++ + Sbjct: 133 SVAAILLFLAIDGHHLFFAAMVRSYQWVGPGQLAAVSHLTYQGMMDGAAQMFVLAIKIMA 192 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P ++ +G++ K VPQIPI + P I LG + LS+ V + F Sbjct: 193 PASATLFFSHVGMGIIAKTVPQIPILIVGMPMNIALGMMMAGLSMGYFVPVMLNHFEM 250 >gi|51246525|ref|YP_066409.1| flagellar biosynthetic protein (FliR) [Desulfotalea psychrophila LSv54] gi|50877562|emb|CAG37402.1| related to flagellar biosynthetic protein (FliR) [Desulfotalea psychrophila LSv54] Length = 260 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 102/233 (43%), Gaps = 1/233 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 +++ RV + +P +S P Q+++ A + ++VL P + I ++ + ++ Sbjct: 14 FLVVLSRVAGFVGAIPVISSVQSPKQIKIALACSVALVLFPIMSPVIHIKELTMPS-FAL 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G G ++ ++F +VI +G ++ Sbjct: 73 LIVAEVLVGTTIGFAAKLIFTSIEFGATVIGYQMGFAAANVFDPQTKGQVALISQFQNSF 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L ID HH + SY +P GQ G + + F + ++ S+P L Sbjct: 133 AILIFLAIDGHHIFIHTASISYQFLPPGQFNYSGGAVPYLIELTAHMFQMGIQFSAPVLA 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + +G+L+++ PQ+ ++ +S P IGL + L++ ++ S F Sbjct: 193 VLLLSGLILGILSRVFPQLNVFMLSFPINIGLAFTVISLTLGLLAMLLSREFD 245 >gi|153836975|ref|ZP_01989642.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ3810] gi|149749748|gb|EDM60493.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ3810] Length = 260 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIQLLSFR 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFMT-IAEQMIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDVAGWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYILAGLYSHYELYWALG 248 >gi|220903477|ref|YP_002478789.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867776|gb|ACL48111.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 263 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 1/239 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++SL L + RV + +LP S + IP+QV+ + F++ + P L + Sbjct: 8 QAEVLSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAVTLVFTLGVWPHL-ALPGSSMPAH 66 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +V+ E LG V G+ + +G+Q G ++ +G + Sbjct: 67 PFDLVLMVLGEAVLGLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGNQTGITA 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ LL +D H + S+ +P G NI +++ F++ L++ Sbjct: 127 FFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPGALFIGSNILWQILHLAAQMFVLALQI 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++P + + +++GL+ + PQI I P IG+G F+ L + I+ L Sbjct: 187 AAPVMVALFMVEVALGLVARTSPQIHIMEFGFPAKIGVGFFFVGLLLVIMADHVETFIL 245 >gi|150390467|ref|YP_001320516.1| flagellar biosynthesis protein FliR [Alkaliphilus metalliredigens QYMF] gi|149950329|gb|ABR48857.1| flagellar biosynthetic protein FliR [Alkaliphilus metalliredigens QYMF] Length = 263 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 104/237 (43%), Gaps = 2/237 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L++ R+ ++ P S + IPM ++ F++ ++++LP + + D A Sbjct: 15 FILLIVRISGIFIIAPIFSRNNIPMMSKIIFSVFLALIILPLVTISEDFAANTFFALMVY 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E LG G + +Y G ++ T IG + + + ++ ++ Sbjct: 75 AI-QEFALGITIGFIGSIYFSTFYLAGMIVDTQIGFGMVNVFDPQMNTQLPIMGNVYNLL 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L ++ HH + A+ SY +PIG Q + + FM+ +LS+P L Sbjct: 134 ISLVFLAVNGHHLLIKAMFDSYDVLPIGFQFQVSEALIMHLTIIFMEIFMMAFKLSAPIL 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N+ +G+L + +PQ+ ++ + P I +G + + +++ +V + F F Sbjct: 194 ATIFLANVLLGILARTMPQMNVFIVGMPLKIIVGLVTIMIALPFLVPFGNALFEKMF 250 >gi|187733359|ref|YP_001879729.1| flagellar biosynthesis protein FliR [Shigella boydii CDC 3083-94] gi|187430351|gb|ACD09625.1| flagellar biosynthetic protein FliR [Shigella boydii CDC 3083-94] Length = 261 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + V+ P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLPLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|89899373|ref|YP_521844.1| flagellar biosynthetic protein FliR [Rhodoferax ferrireducens T118] gi|89344110|gb|ABD68313.1| flagellar biosynthetic protein FliR [Rhodoferax ferrireducens T118] Length = 240 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 91/235 (38%), Gaps = 2/235 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + RV + P S P++ R+ A + P L + ++ Sbjct: 1 MIWPFLRVLAVFTAAPLFSSKAFPLRARIGLAFFIAFAAQPSLQGQPIIS--ISGPEAMG 58 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V ++ +G G +R+ ++ G V+ +GL + + + + + G + Sbjct: 59 AVAQQVGIGLAIGFTVRLVFAAVELAGEVVGFQMGLGFASFFNPALNTQSSAVARFFGQM 118 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 V++ H V A++KS+ P+ Q + F L ++ P + Sbjct: 119 ATFLFVVMNGHLMVLMAVIKSFDKFPVNQNFLEAIGQMKIYDFGTDLFASGLWIALPMVG 178 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + N+++G+++++ PQ+ I+ I P + +G + + ++ ++ F Sbjct: 179 MLLFANLALGIVSRVAPQMNIFAIGFPVTLTVGMVGIAATLPMLDQPFMTLMERA 233 >gi|20807871|ref|NP_623042.1| flagellar biosynthesis protein FliR [Thermoanaerobacter tengcongensis MB4] gi|20516435|gb|AAM24646.1| Flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis MB4] Length = 260 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 100/236 (42%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+ +L P ++P ++ S+++ + + N Sbjct: 11 VQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFASLIVFDVMPPVS--ISIDNVLT 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y LV+ E +G GL + + G +I +G L + I + + I Sbjct: 69 YFLLVISEFLVGLTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQVPLMGNFI 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L +++ H+ +F L KS IPIG+ + + M+ F I R+S+ Sbjct: 129 YIMTILIFMLMNGHYLLFTFLAKSTEIIPIGKIYFDLSGMLQVLTKMVSDMFAIGFRISA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++ +G++++ +PQ+ ++ + P + +G L + + + + F Sbjct: 189 PIILTTVLTDLVLGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIVDFIF 244 >gi|254478864|ref|ZP_05092228.1| flagellar biosynthetic protein FliR [Carboxydibrachium pacificum DSM 12653] gi|214035177|gb|EEB75887.1| flagellar biosynthetic protein FliR [Carboxydibrachium pacificum DSM 12653] Length = 260 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+ +L P ++P ++ S+++ + + + N Sbjct: 11 VQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFTSLIVFDVMP--LVPISIDNVLT 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y LV+ E +G GL + + G +I +G L + I + + I Sbjct: 69 YFLLVISEFLVGLTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQVPLMGNFI 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L +++ H+ +F L KS IPIG+ + + M+ F I R+S+ Sbjct: 129 YIMTILIFMLMNGHYLLFTFLAKSTEIIPIGKVYFDLSGMSQVLTKMVSDMFAIGFRISA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++ +G++++ +PQ+ ++ + P + +G L + + + + F Sbjct: 189 PIILTTVLTDLILGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIVDFIF 244 >gi|188526977|ref|YP_001909664.1| flagellar biosynthesis protein FliR [Helicobacter pylori Shi470] gi|188143217|gb|ACD47634.1| flagellar biosynthesis protein FliR [Helicobacter pylori Shi470] Length = 255 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRFKEEISLAF 248 >gi|317010452|gb|ADU84199.1| flagellar biosynthesis protein FliR [Helicobacter pylori SouthAfrica7] Length = 255 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLDFSNATYTPES---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGAQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKDEISSAF 248 >gi|238924152|ref|YP_002937668.1| flagellar biosynthesis protein FliR [Eubacterium rectale ATCC 33656] gi|238875827|gb|ACR75534.1| flagellar biosynthesis protein FliR [Eubacterium rectale ATCC 33656] gi|291524885|emb|CBK90472.1| flagellar biosynthetic protein FliR [Eubacterium rectale DSM 17629] gi|291529026|emb|CBK94612.1| flagellar biosynthetic protein FliR [Eubacterium rectale M104/1] Length = 259 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 101/225 (44%), Gaps = 3/225 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R+ S + + P + +P +V+ + ++ + + ++V+ ++ Sbjct: 14 FLLILVRIASFVYIAPFFGDNAVPARVKTGLSAFVALFMYNIIER--PQLSYVSAVGFAV 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E G + G + + F G++I IGL++ T S + T + + Sbjct: 72 LVVKEGITGLLIGFAANICNSIVIFAGNLIDMDIGLSMATEFNPSMNSETTVTGNFYYYV 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L+ L V D H + A+ S+ +P+G F N+ S+ + F+I R+ P Sbjct: 132 VLVLLLVSDMHTYLIRAVCDSFSVVPLGGAQFQFDNMLSTMTKYMGDMFVIGFRIFLPVF 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ N +G++ K+ PQ+ ++ + I G + L L + +I Sbjct: 192 ACMMIMNCILGIMAKVAPQMNMFSVGIQLKIIAGFIVLFLIVYLI 236 >gi|317013592|gb|ADU81028.1| flagellar biosynthesis protein FliR [Helicobacter pylori Gambia94/24] Length = 255 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+G+ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|308182347|ref|YP_003926474.1| flagellar biosynthesis protein FliR [Helicobacter pylori PeCan4] gi|308064532|gb|ADO06424.1| flagellar biosynthesis protein FliR [Helicobacter pylori PeCan4] Length = 255 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPKLAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|295690542|ref|YP_003594235.1| flagellar biosynthetic protein FliR [Caulobacter segnis ATCC 21756] gi|295432445|gb|ADG11617.1| flagellar biosynthetic protein FliR [Caulobacter segnis ATCC 21756] Length = 251 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 120/230 (52%), Gaps = 1/230 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+ RVG+ +M +PG+ +P ++RL FA+ +++L P + DT+ V Sbjct: 15 LVFSRVGAMVMTMPGVGDQSVPPRIRLSFALLMALLLGPLVQDTVPPIP-TTLGGLVGAV 73 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + G ++R++ + L G +IS L+ + S + T + + + ++GL Sbjct: 74 IHEILIGLMIGSVLRLFMISLTTAGEIISLQTTLSFAQTTNPSMQGSSTAVATFLSMLGL 133 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + HH A+VKSY P + + + + V + +F + ++L++P + F Sbjct: 134 TLIMATGLHHLFIGAIVKSYTLFPFTRAVPVNDAVTLAVRTVAESFSLGVQLAAPVIVFS 193 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +VFN++ GL+ +++P I+F+++P + LG L LS+ I ++ + Sbjct: 194 LVFNLATGLVGRVMPSFQIFFVTSPLSVILGLSLLALSLGGIAMVWTDRY 243 >gi|210134371|ref|YP_002300810.1| flagellar biosynthesis protein FliR [Helicobacter pylori P12] gi|210132339|gb|ACJ07330.1| flagellar biosynthetic protein [Helicobacter pylori P12] Length = 255 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPES---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+G+ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|149191145|ref|ZP_01869403.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1] gi|148834983|gb|EDL51962.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1] Length = 259 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 99/238 (41%), Gaps = 3/238 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L+ R+ ++ P + IP++V+L FA FS++L P + + F Sbjct: 11 WLGILWWPFVRLTGLFLIAPFFGDNAIPVRVKLLFAFIFSLLLAPLVHEVPPFNPFSIDT 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L +L G + G + ++ G IS +GL + ++ ++ + + Sbjct: 71 LLFSL--YQLIFGFLVGFAVMIFFTIFSIAGQAISMQMGLAMAVMNDPANGISIAIIGRI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I +L +D H V +S+ P+ F +I + M+ F L ++ Sbjct: 129 MFITSMLLFLSLDAHLVVLLVFKESFTYWPLDSTFPFSSI-DYVLKMVSWMFATGLLVAV 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + ++ NI+ GL+NK P + ++ + P + LG L S+ I + L Sbjct: 188 PAIVVMLLSNITFGLMNKAAPSLNVFALGFPMTMLLGLFALMASLTGIGDHYFDLVLE 245 >gi|162139705|ref|YP_877991.2| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium novyi NT] Length = 610 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 105/236 (44%), Gaps = 1/236 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +FL+ R+ S I + L P V++ F + +++ + D + + + Sbjct: 7 FLGVFLVSLRILSFIEVAQILFPKGTPKVVKVMFGVILGFMIITGI-DYSYVNDINSNLM 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++E+ G + G + + +++ G+ + +G + + + + T + ++ Sbjct: 66 IIMYAIIEISTGVILGFITNICFSCIRYAGAFMDLQVGFAMMSMFDPNANSNTTLIERML 125 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L+ ++D + + LV+S+ + IGQ + +N+ F + +R++ P Sbjct: 126 YWFSLIVFIIVDGPNMLIKILVESFKVVHIGQFILNQQSAMHVINVFIKYFQLGIRIAIP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + I+ ++++GL+ K VPQ+ + + P I LG L L + +I +F Sbjct: 186 IVLIIILTDLTMGLVAKSVPQLNVMILGMPVKIVLGLGVLSLCLPVIFNIIGSAFD 241 >gi|28899011|ref|NP_798616.1| flagellar biosynthesis protein FliR [Vibrio parahaemolyticus RIMD 2210633] gi|260365243|ref|ZP_05777800.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030] gi|260878793|ref|ZP_05891148.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AN-5034] gi|260897388|ref|ZP_05905884.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus Peru-466] gi|260899947|ref|ZP_05908342.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ4037] gi|4322009|gb|AAD15912.1| polar flagellar assembly protein FliR [Vibrio parahaemolyticus] gi|28807230|dbj|BAC60500.1| polar flagellar assembly protein FliR [Vibrio parahaemolyticus RIMD 2210633] gi|308088233|gb|EFO37928.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus Peru-466] gi|308094303|gb|EFO43998.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AN-5034] gi|308107282|gb|EFO44822.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ4037] gi|308115400|gb|EFO52940.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030] Length = 260 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIQLLSFR 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFMT-IAEQMIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDMAGWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYILAGLYSHYELYWALG 248 >gi|307636862|gb|ADN79312.1| flagellar biosynthesis protein [Helicobacter pylori 908] gi|325995451|gb|ADZ50856.1| Flagellar biosynthesis protein [Helicobacter pylori 2018] gi|325997049|gb|ADZ49257.1| Flagellar biosynthesis protein [Helicobacter pylori 2017] Length = 255 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+G+ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKDEISLAF 248 >gi|254512033|ref|ZP_05124100.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium KLH11] gi|221535744|gb|EEE38732.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium KLH11] Length = 256 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 109/235 (46%), Gaps = 5/235 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + LF + RV + + LLP IP++V+ A AF++++ P + L F Sbjct: 16 LWHLFAVFLRVSALVSLLPAFGERSIPVRVKFGLAAAFTLIIAPAVPAAGPLPGFPG--- 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ E+ +G G+ +R++ L LQ GS+ + A L+ +G + + + Sbjct: 73 MVGLIGSEILVGLAFGIALRLFVLALQTAGSIAAQATSLS--QILGGAAVEPVPAMGYFL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + GL ++ H +V SY P G ++ V + +F + L++P Sbjct: 131 TLSGLALAALLGLHIHAAQFMVHSYMLFPPGTVPAAPDLSQWGVTQITRSFGMAFALATP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 F+ +++N+++G++N+ +PQ+ + F+ P + G L +I+ +S + Sbjct: 191 FVIASLIYNLALGVINRAMPQLMVAFVGAPAITFAGLFLLFAGTPLILSVWSDAL 245 >gi|317012018|gb|ADU82626.1| flagellar biosynthesis protein FliR [Helicobacter pylori Lithuania75] Length = 255 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILITSAIMGRFKEEISLAF 248 >gi|260767694|ref|ZP_05876629.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] gi|260617203|gb|EEX42387.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] Length = 260 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 95/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 FIANYFWPYARISAMLMVMTVTGARFVSTRIRLYLGLAITFAVMPAIPAVPSDLELLSFN 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFLT-TLNQIIIGVAMGMVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L V D H ++ + +V S+ ++PIG F L T F + L +S Sbjct: 130 FMFLATLFFLVSDGHLKMIHLVVLSFKSLPIGTHSLTAVDFRELALWLGTMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIVALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLCWYILSGLFSHYELFWAEG 248 >gi|323496543|ref|ZP_08101597.1| flagellar biosynthesis protein FliR [Vibrio sinaloensis DSM 21326] gi|323318387|gb|EGA71344.1| flagellar biosynthesis protein FliR [Vibrio sinaloensis DSM 21326] Length = 260 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 94/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ +VRL +A + ++P + + ++ Sbjct: 11 WLANYFWPYTRISAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPAIPAVPEDIQLLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFMTL-LEQIVIGVAMGTVTQFMIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ ++PIG F L F + L +S Sbjct: 130 FMFLATMFFLATDGHLKMIMLVVMSFKSLPIGAGSLTTVDFRELALWLGIMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + +L G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALIVGLLLCWYILGGLYSHYELFWLQG 248 >gi|300696943|ref|YP_003747604.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Ralstonia solanacearum CFBP2957] gi|299073667|emb|CBJ53187.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Ralstonia solanacearum CFBP2957] Length = 262 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 97/241 (40%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV + I + P S + IP +++ F +A ++ L P L + Sbjct: 11 GWIALYWWPLVRVLAFIAMAPPFSNTEIPTSIKVAFGVALTVALAPMLPVPQGVSVGSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G G +++ + G ++S IGL T + + + L Sbjct: 71 GLWITLL--QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I + + A D H + +AL S+ +P+ G + + F + +R++ Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAVFALAVRIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N++ +L++ + + + + +G + + + + + S + Sbjct: 189 LPIIAIMMIVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|317008844|gb|ADU79424.1| flagellar biosynthesis protein FliR [Helicobacter pylori India7] Length = 255 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSTIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCTSVFLQIVFASLVFATDSISFSMGLTMASTYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|15611229|ref|NP_222880.1| flagellar biosynthesis protein FliR [Helicobacter pylori J99] gi|4154675|gb|AAD05742.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 255 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAIYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+G+ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|208434126|ref|YP_002265792.1| flagellar biosynthetic protein [Helicobacter pylori G27] gi|208432055|gb|ACI26926.1| flagellar biosynthetic protein [Helicobacter pylori G27] Length = 255 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSSAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPKLAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|309779457|ref|ZP_07674218.1| flagellar biosynthetic protein FliR [Ralstonia sp. 5_7_47FAA] gi|308921698|gb|EFP67334.1| flagellar biosynthetic protein FliR [Ralstonia sp. 5_7_47FAA] Length = 264 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 96/241 (39%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV + I + P + + IP +++ F + ++ L P L + Sbjct: 11 GWIAMYWWPLVRVLAFIAIAPPFANTEIPTSIKVAFGVVITVALAPMLPVPAGVSVGSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV ++ +G V G +++ + G V+S +GL + + + + + L Sbjct: 71 GLWITLV--QVLIGLVLGFCVQLVFSAISGAGEVMSVQMGLGFASLLDPTQTESSMLLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + + A D H + +AL S+ +P+ + + F + LR++ Sbjct: 129 FLSLTAVTAFIAGDGHLVLLHALFDSFTALPVSAAPLGNPGWQTLAGGGTIVFALALRIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+ +L++ + + + + +G + + + + + S + Sbjct: 189 LPIIAIMMIVNLGFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|323491457|ref|ZP_08096641.1| flagellar biosynthesis protein FliR [Vibrio brasiliensis LMG 20546] gi|323314326|gb|EGA67406.1| flagellar biosynthesis protein FliR [Vibrio brasiliensis LMG 20546] Length = 260 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 95/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ +VRL +A + ++P L D V+ A Sbjct: 11 WIANYFWPYTRIAAMLMVMSVTGARFVFTRVRLYLGLAITFAVMPALPAVPDTIELVSFA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFMTL-LEQIIIGVAMGTVTQFMIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L D H ++ +V S+ +IPIG F L F + L +S Sbjct: 130 FMFLATLFFLATDGHLKMIMLVVMSFKSIPIGTGSLTTVDFRELALWLGIMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L I + + +L G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYIIAGLYNHYEIFWLQG 248 >gi|332161330|ref|YP_004297907.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665560|gb|ADZ42204.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861096|emb|CBX71363.1| flagellar biosynthetic protein fliR [Yersinia enterocolitica W22703] Length = 260 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T + + F + R+ + I P LS I +V++ A+ + ++ P L Sbjct: 6 TTQLSVWVSQYFWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSLPPVNIPL 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + ++ +G GL ++ ++ G VI +GL+ T S Sbjct: 66 VSSGALWVAG---QQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNM 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L L+ ++ +L D H + L S+ T+PI E GN F + FM Sbjct: 123 PVLARLLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTEAGSLIFMN 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H Sbjct: 183 GLMLALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEH 242 Query: 242 SFLYGF 247 F F Sbjct: 243 LFGEFF 248 >gi|317181482|dbj|BAJ59266.1| flagellar biosynthesis protein FliR [Helicobacter pylori F57] Length = 255 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FIV 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|291278827|ref|YP_003495662.1| flagellar biosynthetic protein FliR [Deferribacter desulfuricans SSM1] gi|290753529|dbj|BAI79906.1| flagellar biosynthetic protein FliR [Deferribacter desulfuricans SSM1] Length = 261 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 2/232 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ FLIV RV + P + +++RL F++ SI+++ + V+ Sbjct: 13 LLTFFLIVIRVSGILFTAPVFGSGVVDVRLRLFFSIIVSILIINNVSIIS--FQNVSTLL 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ EL +G G+L R G+QF G +I +G + + + + + Sbjct: 71 LILLVIKELLIGIATGVLARFIFAGVQFGGQLIGFQMGFGVVNILDPQTNTQVSIIAQFQ 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+ +L I H V A+ S+ +P+ + + V + F+ +++ +P Sbjct: 131 NILMILIFLAIGGHLFVIKAISYSFTNVPLAKFTFSSEGYIFLVEKFGSIFLTAIKIIAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ ++ +G++ +LVPQ+ + + P I G L L LS+ F Sbjct: 191 VFVTLLLLHVVMGIMARLVPQMNVLIVGFPVQIAFGLLVLLLSLSYFYKIFE 242 >gi|54307251|ref|YP_128271.1| flagellar biosynthetic protein FliR [Photobacterium profundum SS9] gi|46911671|emb|CAG18469.1| Hypothetical flagellar biosynthetic protein FliR [Photobacterium profundum SS9] Length = 259 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 102/236 (43%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + ++ R+G+ ++++P S IP QVR+ A S++ P + + Sbjct: 11 AWLGQIWWPFFRLGAAMLMMPVFGGSTIPTQVRVGLAFCISLLAAPLMPPMPSVDPLSLD 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L + ++ +G + GL++ + G ++S +GL + S + ++ L Sbjct: 71 AL--ILGVQQMIIGGIMGLMLELLFGVFTTMGQILSMQMGLGMAMSNDPINGVSIPTLGK 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + LL +D H +V+S+ P+G+ + + S V L L+ Sbjct: 129 YYQLYILLLFLALDGHLVALDVVVQSFNVWPVGE-MPSQDALYSVVMRLGWLIAAAFLLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ N + G++N+ PQ+ ++ + P + LG + L ++ I F+ Sbjct: 188 LPAVCAMLLVNGAFGMMNRAAPQLNVFALGFPMTMLLGLMCLLITTSSIPENFTRL 243 >gi|89094443|ref|ZP_01167383.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92] gi|89081335|gb|EAR60567.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92] Length = 256 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 103/236 (43%), Gaps = 2/236 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + + R+GS M +P L + ++RL A+A + V+ P L + Sbjct: 10 EQWVAAFLWPLFRIGSFFMAVPLLGSQLVNARIRLMLALAVTAVIAPMLPEMPAFNGLSV 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +Y ++ ++ +G + G L +V+ G +I+ +GL + ++ ++ L Sbjct: 70 ESYL--IIAQQVIVGAMLGFLFQVFYQVFVLGGQMIAMQMGLGFASMTDPANGISVVMLG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ ++ H + +V+S+ +P+ + + F F + + Sbjct: 128 QFYLTLIMMIFVALNGHLIMIEIVVRSFEVLPVSLQAIDRDSFMKVALSGTWMFSAAMLM 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + P + +V N++ G++++ PQ+ I + P+ + LG +++ + Q+ Sbjct: 188 ALPAVTALLVVNMAFGIMSRAAPQLNILAVGFPFTMVLGLFINWVNLGGFLDQYMR 243 >gi|109946963|ref|YP_664191.1| flagellar biosynthesis protein FliR [Helicobacter acinonychis str. Sheeba] gi|109714184|emb|CAJ99192.1| flagellar biosynthesis protein [Helicobacter acinonychis str. Sheeba] Length = 255 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPES---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + + + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGAQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFIIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L + I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRFKDEISLAF 248 >gi|302670738|ref|YP_003830698.1| flagellar biosynthetic protein FliR [Butyrivibrio proteoclasticus B316] gi|302395211|gb|ADL34116.1| flagellar biosynthetic protein FliR [Butyrivibrio proteoclasticus B316] Length = 261 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 3/225 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI RV S I + P P V++ F + SI+L + + ++ Y+ Sbjct: 14 FLLIFVRVASFIFIAPFFGGRQTPNLVKIGFGLLLSIMLYGAVP--FEAPSYNTIIGYTV 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E+ G + G +++ L F G+++ +GL++ + + T SL + Sbjct: 72 IVLKEVLAGFLIGYAVQLCELISAFAGTIVDMQVGLSMVNIFDPNTNEQVTITGSLYSQV 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L + + + AL ++ IPI G +N + +S + L+ +I R+ P Sbjct: 132 LTMMLILTGMYQYILKALADTFYLIPINGAVINADRLLASIMEFLRDYIVIGFRICLPIF 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + N+ +G+L K+ PQ+ ++ + I +G L + +++ ++ Sbjct: 192 IITFITNVILGVLAKVSPQMNMFAVGIQIKIIIGLLIMFITVTML 236 >gi|56460296|ref|YP_155577.1| flagellar biosynthesis protein FliR [Idiomarina loihiensis L2TR] gi|56179306|gb|AAV82028.1| Flagellar biosynthesis protein FliR [Idiomarina loihiensis L2TR] Length = 261 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 96/236 (40%), Gaps = 1/236 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + RV S IM + S + + +V++ ++A + + P L + ++ Sbjct: 11 WLEQHLWPLTRVSSMIMSMALFSGTIVNSRVKIFLSLAIIMAVSPALPEINAGVEMMSVG 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G GLL ++ G +I+ IGL + + ++ + Sbjct: 71 GFL-VTAQQVVIGVALGLLSILFLQTFVLGGQIIAMQIGLGFASMVDPTNGQQVPVIAQF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L D H + + +V S+ IP+G + + F L Sbjct: 130 FLMLASLVFLAFDGHLLMIHMVVASFDAIPVGMTGLDADALFAVAEWGVYMFSAALTAML 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + ++ N+S G++ + PQ+ I+ I P + G + + L++ ++ F + + Sbjct: 190 SGVIALLLINLSFGVMTRAAPQLNIFAIGFPITMVSGLVVVWLTMGGFIFHFENQW 245 >gi|84514804|ref|ZP_01002167.1| Flagellar protein FliR [Loktanella vestfoldensis SKA53] gi|84510963|gb|EAQ07417.1| Flagellar protein FliR [Loktanella vestfoldensis SKA53] Length = 275 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 94/234 (40%), Gaps = 2/234 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ FL R+ + + P + IP+QVR+ ++A + + + + Sbjct: 25 FMLVFFLHTLRLSAFFLSAPFFGAAAIPVQVRVIVSVAIAFGFYGLI--DVPDPQNLPFL 82 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ ++E+ +G GL + + TG I+ + GL M + ++ Sbjct: 83 SMIEVALIEVVIGLSLGLAFTIAFSAVALTGEKIAASAGLGFAAQMDPNSGGQTPVISQF 142 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + A +D H + + SY +P+GQ F + + F I +L Sbjct: 143 LNLFAIAAFLSLDGHLHMIGLIRMSYEVLPLGQPFKFSAFITGGLAAAGHMFTIASQLML 202 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ NI++G++ + PQ+ ++ P I + L +S + Sbjct: 203 PVVSILLLANITVGVVTRSAPQLNLFSFGFPLTILTCFVALYVSTAPFASGIAE 256 >gi|91223557|ref|ZP_01258822.1| flagellar biosynthesis protein R [Vibrio alginolyticus 12G01] gi|91191643|gb|EAS77907.1| flagellar biosynthesis protein R [Vibrio alginolyticus 12G01] Length = 260 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIELLSFR 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFMT-IAEQIIIGIAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMAGWLGIMFQTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILAGLYSHYEMFWTVG 248 >gi|308063034|gb|ADO04921.1| flagellar biosynthesis protein FliR [Helicobacter pylori Sat464] Length = 255 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRFKEEISLAF 248 >gi|254497496|ref|ZP_05110289.1| flagellar biosynthetic protein FliR [Legionella drancourtii LLAP12] gi|254353311|gb|EET12053.1| flagellar biosynthetic protein FliR [Legionella drancourtii LLAP12] Length = 256 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 99/239 (41%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + R+G ++ +P S +P +V++ F S V P + + + NF Sbjct: 11 VISQVMWPFARIGGLLLSVPVFSSVLLPSRVKVIFLFVLSWVCSPLVPEELTFLNF--NG 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y + EL LG + G +++ G +IS G+ + + + + L Sbjct: 69 AYIVYIAQELLLGLLMGFVLQFTFQVFILGGQIISMQAGMGFAVMVDPASKASVPLVGQL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L ++ H + L+ S+ +P+G ++ + + F L +S Sbjct: 129 YLIMMTLIFLALNGHLMIIETLMDSFKKMPVGHSGVTSSMLWHVITISSWMFKKALLISI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P L +V ++S G++ + PQ+ I+ + P + +G + + + + + Q G Sbjct: 189 PALLSLLVVSLSFGVMARAAPQLNIFSLGFPITLLMGIVVIKIGLPSVAAQMVDIIDEG 247 >gi|308183969|ref|YP_003928102.1| flagellar biosynthesis protein FliR [Helicobacter pylori SJM180] gi|308059889|gb|ADO01785.1| flagellar biosynthesis protein FliR [Helicobacter pylori SJM180] Length = 255 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGVILIISAIMGRFKEEISLAF 248 >gi|260772334|ref|ZP_05881250.1| flagellar biosynthesis protein FliR [Vibrio metschnikovii CIP 69.14] gi|260611473|gb|EEX36676.1| flagellar biosynthesis protein FliR [Vibrio metschnikovii CIP 69.14] Length = 260 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 92/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F R+ + +M++ ++ ++RL +A ++ ++P + D ++ Sbjct: 11 FIAHYFWPFTRISAMLMVMTVTGARFVSPRIRLYLGLAITLAVMPAVPAIADDLQLLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFLT-TLEQIIIGVAMGMVTQFLIQTFVILGQILGMQASLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H + +V S+ ++PIG + L F + L +S Sbjct: 130 FMFLATMFFLATDGHLTMIQLVVLSFTSLPIGAGSLTNVDYYELSQWLGIMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLICGYIVSGLFAHYDLFWAEG 248 >gi|217031933|ref|ZP_03437435.1| hypothetical protein HPB128_3g52 [Helicobacter pylori B128] gi|298736884|ref|YP_003729414.1| flagellar biosynthetic protein FliR [Helicobacter pylori B8] gi|216946402|gb|EEC25007.1| hypothetical protein HPB128_3g52 [Helicobacter pylori B128] gi|298356078|emb|CBI66950.1| flagellar biosynthetic protein FliR [Helicobacter pylori B8] Length = 255 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|288962717|ref|YP_003453011.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288914983|dbj|BAI76467.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 256 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 126/227 (55%), Gaps = 1/227 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F+++ RV + I LLPG + +PM+VR A+ ++VLLP + D ++ Sbjct: 20 FVVLARVAAAIGLLPGFGEAAVPMRVRAALAIIVTLVLLPGVDGLPDRMP-EQPVEMLRI 78 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E +G GL R++ LQ TG++ + +GL+ SM + + L+ ++ I G Sbjct: 79 LAGETLVGAYLGLGARLFMAALQTTGALAAQVVGLSNPFSMAAAGFEGGSVLSGVLLIGG 138 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L L+ D H+ + AL +SYG+ P + + G + F +L TTF + + L++PF+ + Sbjct: 139 LALLFASDVHYLMIGALARSYGSWPAAEFPDLGMVAQRFAELLATTFRLGVGLAAPFILY 198 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 +V N+++GL+N+++P +P+YF++TP ++ LG + ++ F Sbjct: 199 GLVMNLALGLVNRVMPAMPVYFVATPGVLMLGLGLFMATAGAMLTAF 245 >gi|217033997|ref|ZP_03439419.1| hypothetical protein HP9810_891g1 [Helicobacter pylori 98-10] gi|216943505|gb|EEC22956.1| hypothetical protein HP9810_891g1 [Helicobacter pylori 98-10] Length = 255 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV S + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSSVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|317179977|dbj|BAJ57763.1| flagellar biosynthesis protein FliR [Helicobacter pylori F32] Length = 255 Score = 136 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|218530778|ref|YP_002421594.1| flagellar biosynthetic protein FliR [Methylobacterium chloromethanicum CM4] gi|218523081|gb|ACK83666.1| flagellar biosynthetic protein FliR [Methylobacterium chloromethanicum CM4] Length = 258 Score = 136 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 122/238 (51%), Gaps = 1/238 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RVG+ +ML+PGL I ++RL A+ ++VL P + + N Sbjct: 11 GLAAAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPTGNAALA 70 Query: 67 AY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ + + + Sbjct: 71 APALIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGGQQAAIG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + ++G+ + D HH A+ +SY +P + ++ +F + +R+ Sbjct: 131 NFLAMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLALHAFSRSFALAVRI 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F Sbjct: 191 SGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLFLDDL 248 >gi|207092537|ref|ZP_03240324.1| flagellar biosynthesis protein FliR [Helicobacter pylori HPKX_438_AG0C1] Length = 255 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|254778887|ref|YP_003056992.1| flagellar biosynthesis protein FliR [Helicobacter pylori B38] gi|254000798|emb|CAX28722.1| Flagellar biosynthetic protein FliR; putative membrane protein [Helicobacter pylori B38] Length = 255 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|15644802|ref|NP_206972.1| flagellar biosynthesis protein FliR [Helicobacter pylori 26695] gi|2313256|gb|AAD07238.1| flagellar biosynthetic protein (fliR) [Helicobacter pylori 26695] Length = 255 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|224826620|ref|ZP_03699721.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002] gi|224601221|gb|EEG07403.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002] Length = 258 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 R+ ++ P S P + + FA+ +++L+P L + Sbjct: 16 FVWPFARIMGVLLADPLFSSRSAPARFKAGFALLLTLLLVPLLPPQPAIPVVSAEG--VA 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ +L +G GL++RV ++ G V+ T +GL + ++ + ++ + Sbjct: 74 VLVQQLLIGLALGLVMRVVITAVEMAGFVMGTQMGLGFASFYDPINAAQVPTIARILTLF 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L ++ H V L++S+ T+PIG L + + F L L+ P + Sbjct: 134 TFLLFLLMGGHQVVIEILLESFRTLPIGMTLP-PDRLKALAEWGGHIFNWGLWLALPVVA 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +V N++IG++ + PQ I+ P + +G L LS+ ++V + F Sbjct: 193 ALLVTNLAIGVMTRASPQFNIFTFGFPLTLLVGFAALYLSVPLMVPAIESIYREAF 248 >gi|297582019|ref|ZP_06943938.1| flagellar biosynthetic protein FliR [Vibrio cholerae RC385] gi|297533714|gb|EFH72556.1| flagellar biosynthetic protein FliR [Vibrio cholerae RC385] Length = 260 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 95/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++P +VRL +A ++ ++P + ++ Sbjct: 11 FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTLAVMPAIPAVPSGIALLSLQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GF-MITLEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L V D H ++ +V S+ ++PIG F L F L +S Sbjct: 130 FMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEA 248 >gi|108562594|ref|YP_626910.1| flagellar biosynthesis protein FliR [Helicobacter pylori HPAG1] gi|107836367|gb|ABF84236.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1] Length = 255 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|258621116|ref|ZP_05716150.1| flagellar biosynthesis protein [Vibrio mimicus VM573] gi|258626189|ref|ZP_05721037.1| flagellar biosynthesis protein [Vibrio mimicus VM603] gi|261209857|ref|ZP_05924158.1| flagellar biosynthesis protein FliR [Vibrio sp. RC341] gi|262166222|ref|ZP_06033959.1| flagellar biosynthesis protein FliR [Vibrio mimicus VM223] gi|262170892|ref|ZP_06038570.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451] gi|262404467|ref|ZP_06081022.1| flagellar biosynthesis protein FliR [Vibrio sp. RC586] gi|258581544|gb|EEW06445.1| flagellar biosynthesis protein [Vibrio mimicus VM603] gi|258586504|gb|EEW11219.1| flagellar biosynthesis protein [Vibrio mimicus VM573] gi|260841043|gb|EEX67568.1| flagellar biosynthesis protein FliR [Vibrio sp. RC341] gi|261891968|gb|EEY37954.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451] gi|262025938|gb|EEY44606.1| flagellar biosynthesis protein FliR [Vibrio mimicus VM223] gi|262349499|gb|EEY98637.1| flagellar biosynthesis protein FliR [Vibrio sp. RC586] Length = 260 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 92/238 (38%), Gaps = 1/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++P +VRL +A + ++P + ++ Sbjct: 11 FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L + Sbjct: 71 GF-MITFEQIVIGMAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQM 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L D H ++ +V S+ ++PIG + L F L +S Sbjct: 130 FMLLATLFFLSSDGHLKMIQLVVFSFKSLPIGSGSLTTVDYRELALWLGIMFKASLAVSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + N+S G++ + PQ+ I+ + + + +G L + + + + Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYILSGLYTHYEIYWQE 247 >gi|114777580|ref|ZP_01452561.1| Flagellar biosynthesis protein FliR [Mariprofundus ferrooxydans PV-1] gi|114552051|gb|EAU54568.1| Flagellar biosynthesis protein FliR [Mariprofundus ferrooxydans PV-1] Length = 260 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 114/231 (49%), Gaps = 2/231 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L++ RV + IM+LP L +P Q++ + +I++ P + D + A + + Sbjct: 15 LLVMLRVSALIMMLPILGHQLVPAQIKRGLIVLLTILIFPLVADKVAAIPLKPVA-FVIV 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ + L ++ +Q G +IS +G+++ ++ ++ L + Sbjct: 74 AIHEILVAAAIALFAQLIFAAIQLAGQLISFQMGMSVANVFDPMTHSQQSVVSQLAVTLA 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 +L + HH AL++S+ PI Q + F S+ + T F++ L++++P + Sbjct: 134 MLLWISVGAHHMFITALIESFTLFPIHQAIYFP-ALSTLTDAAATMFVLALKIAAPLMVL 192 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + +++GLL++ VPQI ++F+S P +GLG L L + VY S +F Sbjct: 193 MTLVYVALGLLSRAVPQIQVFFVSFPLTVGLGLLTFALGMPAFVYLVSDAF 243 >gi|123442776|ref|YP_001006753.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089737|emb|CAL12590.1| flagellar biosynthetic protein FliR [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 260 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T + + F + R+ + I P LS I +V++ A+ + ++ P L Sbjct: 6 TTQLSVWVSQYFWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSLPPVNIPL 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + ++ +G GL ++ ++ G VI +GL+ T S Sbjct: 66 VSSGALWVAG---QQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNM 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L L+ ++ +L D H + L S+ T+PI E GN F + FM Sbjct: 123 PVLARLLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMN 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H Sbjct: 183 GLMLALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEH 242 Query: 242 SFLYGF 247 F F Sbjct: 243 LFGEFF 248 >gi|317179432|dbj|BAJ57220.1| flagellar biosynthesis protein FliR [Helicobacter pylori F30] Length = 255 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|15642120|ref|NP_231752.1| flagellar biosynthesis protein FliR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586827|ref|ZP_01676609.1| flagellar biosynthetic protein FliR [Vibrio cholerae 2740-80] gi|121727225|ref|ZP_01680392.1| flagellar biosynthetic protein FliR [Vibrio cholerae V52] gi|147673452|ref|YP_001217642.1| flagellar biosynthesis protein FliR [Vibrio cholerae O395] gi|153213230|ref|ZP_01948642.1| flagellar biosynthetic protein FliR [Vibrio cholerae 1587] gi|153803024|ref|ZP_01957610.1| flagellar biosynthetic protein FliR [Vibrio cholerae MZO-3] gi|153818966|ref|ZP_01971633.1| flagellar biosynthetic protein FliR [Vibrio cholerae NCTC 8457] gi|153822888|ref|ZP_01975555.1| flagellar biosynthetic protein FliR [Vibrio cholerae B33] gi|153825611|ref|ZP_01978278.1| flagellar biosynthetic protein FliR [Vibrio cholerae MZO-2] gi|153828645|ref|ZP_01981312.1| flagellar biosynthetic protein FliR [Vibrio cholerae 623-39] gi|227082246|ref|YP_002810797.1| flagellar biosynthetic protein FliR [Vibrio cholerae M66-2] gi|229507794|ref|ZP_04397299.1| flagellar biosynthesis protein FliR [Vibrio cholerae BX 330286] gi|229511969|ref|ZP_04401448.1| flagellar biosynthesis protein FliR [Vibrio cholerae B33] gi|229513772|ref|ZP_04403234.1| flagellar biosynthesis protein FliR [Vibrio cholerae TMA 21] gi|229519105|ref|ZP_04408548.1| flagellar biosynthesis protein FliR [Vibrio cholerae RC9] gi|229522074|ref|ZP_04411491.1| flagellar biosynthesis protein FliR [Vibrio cholerae TM 11079-80] gi|229524123|ref|ZP_04413528.1| flagellar biosynthesis protein FliR [Vibrio cholerae bv. albensis VL426] gi|229607339|ref|YP_002877987.1| flagellar biosynthesis protein FliR [Vibrio cholerae MJ-1236] gi|254226358|ref|ZP_04919947.1| flagellar biosynthetic protein FliR [Vibrio cholerae V51] gi|254291357|ref|ZP_04962150.1| flagellar biosynthetic protein FliR [Vibrio cholerae AM-19226] gi|254849206|ref|ZP_05238556.1| flagellar biosynthesis protein FliR [Vibrio cholerae MO10] gi|255745140|ref|ZP_05419089.1| flagellar biosynthesis protein FliR [Vibrio cholera CIRS 101] gi|262153470|ref|ZP_06028600.1| flagellar biosynthesis protein FliR [Vibrio cholerae INDRE 91/1] gi|262167480|ref|ZP_06035186.1| flagellar biosynthesis protein FliR [Vibrio cholerae RC27] gi|262191370|ref|ZP_06049560.1| flagellar biosynthesis protein FliR [Vibrio cholerae CT 5369-93] gi|298497857|ref|ZP_07007664.1| flagellar biosynthetic protein FliR [Vibrio cholerae MAK 757] gi|9656671|gb|AAF95266.1| flagellar biosynthetic protein FliR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548994|gb|EAX59033.1| flagellar biosynthetic protein FliR [Vibrio cholerae 2740-80] gi|121630470|gb|EAX62863.1| flagellar biosynthetic protein FliR [Vibrio cholerae V52] gi|124116030|gb|EAY34850.1| flagellar biosynthetic protein FliR [Vibrio cholerae 1587] gi|124121422|gb|EAY40165.1| flagellar biosynthetic protein FliR [Vibrio cholerae MZO-3] gi|125621108|gb|EAZ49453.1| flagellar biosynthetic protein FliR [Vibrio cholerae V51] gi|126510461|gb|EAZ73055.1| flagellar biosynthetic protein FliR [Vibrio cholerae NCTC 8457] gi|126519584|gb|EAZ76807.1| flagellar biosynthetic protein FliR [Vibrio cholerae B33] gi|146315335|gb|ABQ19874.1| flagellar biosynthetic protein FliR [Vibrio cholerae O395] gi|148875916|gb|EDL74051.1| flagellar biosynthetic protein FliR [Vibrio cholerae 623-39] gi|149740762|gb|EDM54861.1| flagellar biosynthetic protein FliR [Vibrio cholerae MZO-2] gi|150422687|gb|EDN14641.1| flagellar biosynthetic protein FliR [Vibrio cholerae AM-19226] gi|227010134|gb|ACP06346.1| flagellar biosynthetic protein FliR [Vibrio cholerae M66-2] gi|227014017|gb|ACP10227.1| flagellar biosynthetic protein FliR [Vibrio cholerae O395] gi|229337704|gb|EEO02721.1| flagellar biosynthesis protein FliR [Vibrio cholerae bv. albensis VL426] gi|229340999|gb|EEO06004.1| flagellar biosynthesis protein FliR [Vibrio cholerae TM 11079-80] gi|229343794|gb|EEO08769.1| flagellar biosynthesis protein FliR [Vibrio cholerae RC9] gi|229348953|gb|EEO13910.1| flagellar biosynthesis protein FliR [Vibrio cholerae TMA 21] gi|229351934|gb|EEO16875.1| flagellar biosynthesis protein FliR [Vibrio cholerae B33] gi|229355299|gb|EEO20220.1| flagellar biosynthesis protein FliR [Vibrio cholerae BX 330286] gi|229369994|gb|ACQ60417.1| flagellar biosynthesis protein FliR [Vibrio cholerae MJ-1236] gi|254844911|gb|EET23325.1| flagellar biosynthesis protein FliR [Vibrio cholerae MO10] gi|255736970|gb|EET92366.1| flagellar biosynthesis protein FliR [Vibrio cholera CIRS 101] gi|262024052|gb|EEY42747.1| flagellar biosynthesis protein FliR [Vibrio cholerae RC27] gi|262030707|gb|EEY49341.1| flagellar biosynthesis protein FliR [Vibrio cholerae INDRE 91/1] gi|262032745|gb|EEY51293.1| flagellar biosynthesis protein FliR [Vibrio cholerae CT 5369-93] gi|297542190|gb|EFH78240.1| flagellar biosynthetic protein FliR [Vibrio cholerae MAK 757] gi|327484649|gb|AEA79056.1| Flagellar biosynthesis protein FliR [Vibrio cholerae LMA3894-4] Length = 260 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 93/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++P +VRL +A + ++P + ++ Sbjct: 11 FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GF-MITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L V D H ++ +V S+ ++PIG F L F L +S Sbjct: 130 FMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEA 248 >gi|254228443|ref|ZP_04921869.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25] gi|262393600|ref|YP_003285454.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25] gi|269965691|ref|ZP_06179804.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B] gi|151939031|gb|EDN57863.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25] gi|262337194|gb|ACY50989.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25] gi|269829759|gb|EEZ83995.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B] Length = 260 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIELLSFR 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFMT-IAEQMIIGIAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMAGWLGIMFQTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILAGLYSHYEMFWTVG 248 >gi|83747645|ref|ZP_00944681.1| FliR [Ralstonia solanacearum UW551] gi|207739726|ref|YP_002258119.1| flagellar biosynthetic protein flir [Ralstonia solanacearum IPO1609] gi|83725697|gb|EAP72839.1| FliR [Ralstonia solanacearum UW551] gi|206593108|emb|CAQ60014.1| flagellar biosynthetic protein flir [Ralstonia solanacearum IPO1609] Length = 262 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 96/241 (39%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV + I + P S + IP +++ F + ++ L P L + Sbjct: 11 GWIALYWWPLVRVLAFIAMAPPFSNTEIPTSIKVAFGVVLTVALAPMLPVPQGVSVGSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G G +++ + G ++S IGL T + + + L Sbjct: 71 GLWITLL--QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I + + A D H + +AL S+ +P+ G + + F + +R++ Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAVFALAVRIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + +V N++ +L++ + + + + +G + + + + + S + Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|261839034|gb|ACX98799.1| flagellar biosynthesis protein FliR [Helicobacter pylori 52] gi|315586173|gb|ADU40554.1| flagellar biosynthetic protein FliR [Helicobacter pylori 35A] Length = 255 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|238788322|ref|ZP_04632116.1| Flagellar biosynthetic protein fliR [Yersinia frederiksenii ATCC 33641] gi|238723568|gb|EEQ15214.1| Flagellar biosynthetic protein fliR [Yersinia frederiksenii ATCC 33641] Length = 260 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T I + F + RV + I P LS I +V++ A+ + ++ P L + Sbjct: 6 TTQLSIWVSQYFWPLVRVLALITTAPVLSEKQINRKVKVGLAVLITFLIAPSL---PPVN 62 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + A + ++ +G GL ++ ++ G VI +GL+ T S Sbjct: 63 IPLVSAGAVWVAAQQVLIGVAIGLTMQFAFAAVRLAGEVIGLQMGLSFATFFDPSGGPNM 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L L+ ++ +L D H + L S+ T+PI E GN F + FM Sbjct: 123 PVLARLLNLLAMLLFLAFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMN 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H Sbjct: 183 GLMLALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFSEH 242 Query: 242 SFLYGF 247 F F Sbjct: 243 LFGEFF 248 >gi|317176989|dbj|BAJ54778.1| flagellar biosynthesis protein FliR [Helicobacter pylori F16] Length = 255 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|332673015|gb|AEE69832.1| flagellar biosynthetic protein FliR [Helicobacter pylori 83] Length = 255 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSTIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEETSLAF 248 >gi|284041539|ref|YP_003391879.1| flagellar biosynthetic protein FliR [Conexibacter woesei DSM 14684] gi|283945760|gb|ADB48504.1| flagellar biosynthetic protein FliR [Conexibacter woesei DSM 14684] Length = 266 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 100/227 (44%), Gaps = 2/227 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ FL++ RV ++ P + +P + R A+AF++ L P L Sbjct: 20 VVGFFLVLARVSPLFLVAPMFNSRQVPARARTIVALAFALGLYPLAVAGQTLP--TEAFA 77 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G L + V + G+++ +G S+ L + Sbjct: 78 IVGLIVKEMLVGLAFALCVSVMFAAVDAAGTLLDFMVGFAFGGSLDPITGNQSAVLARVY 137 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + I+ + + +++ +P+ +F +I V + T F L +++P Sbjct: 138 SLVAVAIFIAINGDAWLIQGMSRTFDIVPLSASPDFASISQGVVAVFTTIFASALAVAAP 197 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L ++ +++ GL++++VPQ+ ++ + P + +G + + S+ + Sbjct: 198 VLIACVLTDVAFGLVSRVVPQMNVFAVGFPVKVIVGLVVVAASLPFV 244 >gi|207728356|ref|YP_002256750.1| flagellar biosynthetic protein flir [Ralstonia solanacearum MolK2] gi|206591602|emb|CAQ57214.1| flagellar biosynthetic protein flir [Ralstonia solanacearum MolK2] Length = 262 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 96/241 (39%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV + I + P S + IP +++ F + ++ L P L + Sbjct: 11 GWIALYWWPLVRVLAFIAMAPPFSNTEIPTSIKVAFGVVLTVALAPMLPVPQGVSVGSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G G +++ + G ++S IGL T + + + L Sbjct: 71 GLWITLL--QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I + + A D H + +AL S+ +P+ G + + F + +R++ Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAIFALAVRIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + +V N++ +L++ + + + + +G + + + + + S + Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|328474452|gb|EGF45257.1| flagellar biosynthesis protein FliR [Vibrio parahaemolyticus 10329] Length = 260 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M++ ++ ++RL +A + ++P + ++ Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAISQDIQLLSFR 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GFMT-IAEQMIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ T+PIG F L F L +S Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDMAGWLGIMFKTALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYILAGLYSHYELYWALG 248 >gi|310641561|ref|YP_003946319.1| flagellar biosynthetic protein flir [Paenibacillus polymyxa SC2] gi|309246511|gb|ADO56078.1| Flagellar biosynthetic protein fliR [Paenibacillus polymyxa SC2] Length = 215 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 4/191 (2%) Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Q Y LV E+ +G + G ++ +Q GS I +G + + + Sbjct: 11 QQVPTDVAYVLLVGREVLIGLLLGFTAYLFMTAIQTAGSFIDLQVGFGMASVFDPMTGAS 70 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQ 176 + I +L I+ HH + A++ SY +P+ + G++ V Sbjct: 71 TPLTGNFKFAIAVLFFLSINGHHHLLNAILYSYDWVPLTNDFFIKLYGGSVTEFLVRSFA 130 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +FM+ ++++P + + ++ +G L K PQ I+ I P I +G L L + Sbjct: 131 ESFMLAFQIAAPIVVATFLTDVGLGFLAKTAPQFNIFVIGVPLKIIVGLFMLLLLMPSFA 190 Query: 237 YQFSHSFLYGF 247 + F F F Sbjct: 191 FIFERLFSVMF 201 >gi|160880829|ref|YP_001559797.1| flagellar biosynthetic protein FliR [Clostridium phytofermentans ISDg] gi|160429495|gb|ABX43058.1| flagellar biosynthetic protein FliR [Clostridium phytofermentans ISDg] Length = 255 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 101/242 (41%), Gaps = 2/242 (0%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 + P ++ F+I+ R+ + I P S+ +P +V++ ++ +I+L + Sbjct: 1 MVIPVEQLVFFFVILVRISAFIYTGPFFSLKNVPQKVKIGLSLTLAIILNQTIP--YSEL 58 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + ++ +++ E G + G + L G ++ IG ++ + Sbjct: 59 VYEGVIGFAIVIVGEALAGAIMGFFSNICFQILSLAGQLMDMEIGFSMVNEFDPISNAQV 118 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 T + +L L + + HH + ALV SY IP+G I++ V + F+I Sbjct: 119 TITANFYHYAVMLFLLITNMHHYIIKALVDSYQVIPVGGAKLNPLIYTVMVQFVVDFFVI 178 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 R+ P ++ N+ + +L K+ PQ+ ++ I + +G + L +I Sbjct: 179 AFRIILPIFASMLIVNVVLAILAKVAPQMNMFVIGLQLKVLIGFIVLLFMTLMIPSVADF 238 Query: 242 SF 243 F Sbjct: 239 IF 240 >gi|271500074|ref|YP_003333099.1| flagellar biosynthetic protein FliR [Dickeya dadantii Ech586] gi|270343629|gb|ACZ76394.1| flagellar biosynthetic protein FliR [Dickeya dadantii Ech586] Length = 260 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 F + R+ + I P S I +V++ + +IV+ P + + Sbjct: 11 GWFNQFFWPLVRILALISTAPIFSERAITRRVKIGIGVLITIVIAPNIPH---ASIPIFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A ++ ++ +G + G +++ ++ G +I +GL+ T S + Sbjct: 68 ATGVWMLFQQVVIGVMLGFTMQLAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVIAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ LL ++ H + LV S+ TIPIG GN+F + F L L+ Sbjct: 128 FMNLLALLLFLSMNGHLWLISLLVDSFHTIPIGASPVSGNVFMTLAGAGGRIFSNGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++GLL++L PQ+ I+ I P + G + + I +I F Sbjct: 188 LPLITLLLTINMALGLLSRLAPQLTIFAIGFPITLFTGIITVGFLIFLISPYAEKLFGET 247 Query: 247 F 247 + Sbjct: 248 Y 248 >gi|261252334|ref|ZP_05944907.1| flagellar biosynthesis protein FliR [Vibrio orientalis CIP 102891] gi|260935725|gb|EEX91714.1| flagellar biosynthesis protein FliR [Vibrio orientalis CIP 102891] Length = 260 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 95/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ +VRL +A + ++P + D ++ A Sbjct: 11 WIANYFWPYTRIAAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPAIPAVPDTIELLSFA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFMTL-LEQIIIGVAMGTVTQFMIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L D H ++ +V S+ ++PIG F L F + L +S Sbjct: 130 FMFLSTLFFLTTDGHLKMIMLVVMSFKSLPIGTGSLTTVDFRELALWLGIMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + ++ G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYLVAGLYNHYELFWIQG 248 >gi|256831233|ref|YP_003159961.1| flagellar biosynthetic protein FliR [Desulfomicrobium baculatum DSM 4028] gi|256580409|gb|ACU91545.1| flagellar biosynthetic protein FliR [Desulfomicrobium baculatum DSM 4028] Length = 259 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 100/234 (42%), Gaps = 1/234 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + ++ + R+ + L+P +P + + ++ L P L I Q + Sbjct: 10 VFLTFLFALMRISLILFLMPFFGGQTLPATAKAALCLTLTLALWPRL-PLIGAQMPSHPF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + EL LG + G++IR +Q G +I +G + + +E Sbjct: 69 ALAVMFGAELLLGLILGMVIRFVFAAIQTGGQLIGFQMGFAMVNVVDPDSGASEAVTAHF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL I+ H + L+KS+ +P G L + + F++ +++ + Sbjct: 129 MYMVSLLTFLSINGHLYLLSGLMKSFDLLPPGSILISPRLTDQIFALSGQIFVLAIQIGA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ ++++ L+++ PQ+ + I P I +G LFL + EII Sbjct: 189 PVIAAILLVDLALALISRASPQMNVLIIGFPIKISVGFLFLGIIFEIISLHMEG 242 >gi|251789176|ref|YP_003003897.1| flagellar biosynthetic protein FliR [Dickeya zeae Ech1591] gi|247537797|gb|ACT06418.1| flagellar biosynthetic protein FliR [Dickeya zeae Ech1591] Length = 260 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 101/241 (41%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 F + R+ + I P S I +V+L + +I ++P + T + Sbjct: 11 GWFNQFFWPLVRILALISTAPIFSERAITRRVKLGLGVLITIAIMPAIPHT---SIPIFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A ++ ++ +G + G +++ ++ G +I +GL+ T S + Sbjct: 68 AAGIWMLFQQVVIGVMLGFTMQLAFTAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVIAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ LL ++ H + L S+ TIPIG GN+F S F L L+ Sbjct: 128 FMNLLALLLFLTMNGHLWLISLLADSFHTIPIGAGPVSGNVFMSLAEAGGRIFSNGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++GLL++L PQ+ I+ I P + G + + I +I F Sbjct: 188 LPLITLLLTINMALGLLSRLAPQLTIFAIGFPITLFTGIITVGFLIFLISPYAEKLFGET 247 Query: 247 F 247 + Sbjct: 248 Y 248 >gi|183598642|ref|ZP_02960135.1| hypothetical protein PROSTU_02046 [Providencia stuartii ATCC 25827] gi|188020825|gb|EDU58865.1| hypothetical protein PROSTU_02046 [Providencia stuartii ATCC 25827] Length = 260 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F R+ + P + +VR+ A +++ P L + + Sbjct: 11 LWLSQGFYPFIRLLALFGTAPFFNEKQSITKVRVILAFFIILIVSPQL---PVVNIPLFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A +++ ++ +G GL +++ ++ G VI +GL+ T + L Sbjct: 68 AMGLWVIVQQIVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ +I LL D H + Y L+ S+ IPI + F S + F+ L L+ Sbjct: 128 ILNLIMLLLFLSFDGHLWLIYILIHSFELIPIQVSPLSRDGFWSLAQFASSIFINGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 PF+ +++ N+++G+LN++ PQ+ ++ + P + +G L L I I+ Sbjct: 188 LPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYSERLIHQA 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|326622853|gb|EGE29198.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 245 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 3/232 (1%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 + RV + I P LS IP +V+L + ++V+ P L + + L M Sbjct: 1 MLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAALW---LTMQ 57 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 ++ +G G ++ ++ G I +GL+ T + L L ++ ++ +L Sbjct: 58 QILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLL 117 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + H + LV ++ T+PIG N F + F+ L L+ P + + Sbjct: 118 FLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLT 177 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F Sbjct: 178 LNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 229 >gi|260776471|ref|ZP_05885366.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC BAA-450] gi|260607694|gb|EEX33959.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC BAA-450] Length = 260 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 94/239 (39%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ +VRL +A + ++P + D ++ Sbjct: 11 WIANYFWPYTRIAAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPVIPAVPDTIELLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G + + G ++ L + + ++ L L Sbjct: 71 GFMTL-LEQIIIGVAMGTITQFMIQTFVILGQILGMQASLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D H ++ +V S+ ++PIG F L F + L +S Sbjct: 130 FMFLATMFFLATDGHLKMIMLVVMSFKSLPIGSGSLNSVDFRELALWLGIMFKVALSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L I + + +L G Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALIVGLLLCWYIIAGLFSHYELFWLQG 248 >gi|34498579|ref|NP_902794.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC 12472] gi|34104433|gb|AAQ60791.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC 12472] Length = 252 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 93/241 (38%), Gaps = 9/241 (3%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + R+ + P + +P + + FA+ +++L Sbjct: 11 AWVSVFAWPFARIVGLFLAEPVFAYRGVPRRFKAAFALVLTVILA--------PLLPPLP 62 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A +++ +L +G G ++R+ ++ TG +I GL + L+ Sbjct: 63 AEGIAILVQQLLIGLSMGFVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAAQVPVLSQ 122 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ + D HH V AL S+ +PIG + I + F + L+ Sbjct: 123 MLSLFTFFLFLAFDGHHVVLGALAHSFQVLPIGMPMPAQGI-KALTLWGAHLFEWGVWLA 181 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N++IG++ + PQ I+ P I +G L L++ +++ + G Sbjct: 182 MPIIGALLITNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVIERMYQAG 241 Query: 247 F 247 F Sbjct: 242 F 242 >gi|331671780|ref|ZP_08372576.1| flagellar biosynthetic protein FliR [Escherichia coli TA280] gi|331070769|gb|EGI42128.1| flagellar biosynthetic protein FliR [Escherichia coli TA280] Length = 277 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 101/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 29 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 86 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 87 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 146 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 147 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 205 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + +G + + + + H Sbjct: 206 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLLYNLPDHYLHL 260 >gi|300818630|ref|ZP_07098838.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1] gi|300528802|gb|EFK49864.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1] Length = 261 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|308061462|gb|ADO03350.1| flagellar biosynthesis protein FliR [Helicobacter pylori Cuz20] Length = 255 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + ++ ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQVLLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFESALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|146278645|ref|YP_001168804.1| type III secretion system inner membrane R protein [Rhodobacter sphaeroides ATCC 17025] gi|145556886|gb|ABP71499.1| type III secretion system inner membrane R protein [Rhodobacter sphaeroides ATCC 17025] Length = 258 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 115/224 (51%), Gaps = 7/224 (3%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 +T+ + + + FL+ RVG+ + LLP +P +VRL A+AF+ ++ P + D + Sbjct: 10 LTLMVQDLFRAGFLVFIRVGAAMALLPAFGEMTLPARVRLTIALAFTAIVFPAVSDGVPA 69 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + A + +E +G V G+ +R++ L LQ G+V + A+ L+ G Sbjct: 70 FDGSPVA-----LGIEAAIGLVLGISLRLFVLALQTAGTVAAQAVSLS--QMFGSPSGEP 122 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + + +++ + GL H ++ L+ SY +P + G++ ++++ TF Sbjct: 123 QPVIGNVLTLAGLAIAVAGGLHVRLAEFLILSYDLLPAARLPVAGDVADWGLHLIVHTFA 182 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 + LS PF+ VFN+++G++N+ +PQ+ ++F+ P L G Sbjct: 183 LAFMLSMPFVAASFVFNVALGIINRAMPQLMVFFVGAPALTFGG 226 >gi|333004055|gb|EGK23589.1| flagellar biosynthetic protein FliR [Shigella flexneri K-272] gi|333017828|gb|EGK37135.1| flagellar biosynthetic protein FliR [Shigella flexneri K-227] Length = 261 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|312973833|ref|ZP_07788005.1| flagellar biosynthetic protein FliR [Escherichia coli 1827-70] gi|310332428|gb|EFP99663.1| flagellar biosynthetic protein FliR [Escherichia coli 1827-70] Length = 261 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ +Q G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVQTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|224370772|ref|YP_002604936.1| FliR [Desulfobacterium autotrophicum HRM2] gi|223693489|gb|ACN16772.1| FliR [Desulfobacterium autotrophicum HRM2] Length = 262 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 1/225 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L++ RV + +LP + P V+ AM S++L + DL Sbjct: 15 FLLVLARVSIVLFMLPIFGTTMFPTMVKAGLAMVISMLLYSVVQLDPDLLPETAMGMGIF 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV E +G GL +R++ Q G VI +G ++ + + + L + Sbjct: 75 LV-SEAMIGLTLGLCVRLFFGSFQLAGEVIGFQMGFSMINVVDPQSGANVSLMEQLAYWV 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL ++ HH + +LV S+ + G + + + + F++ +++ +P + Sbjct: 134 ALLVFLAMNGHHIMLLSLVDSFELVQPGSFVFQQIMVDKVIFLGSQMFILAIKIGAPVIA 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +++ GL K PQ+ + ++ P I +G + LS+EII+ Sbjct: 194 ALLFTSVAFGLTAKFSPQMNVMIVAFPLKIIVGLVLFGLSLEIII 238 >gi|194434960|ref|ZP_03067203.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 1012] gi|194416795|gb|EDX32921.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 1012] Length = 260 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 11 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 67 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 68 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 128 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + ++ H F F Sbjct: 188 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLVAPFCEHLFSEMF 247 >gi|30063388|ref|NP_837559.1| flagellar biosynthesis protein FliR [Shigella flexneri 2a str. 2457T] gi|56480008|ref|NP_707835.2| flagellar biosynthesis protein FliR [Shigella flexneri 2a str. 301] gi|110805919|ref|YP_689439.1| flagellar biosynthesis protein FliR [Shigella flexneri 5 str. 8401] gi|30041640|gb|AAP17368.1| flagellar biosynthetic protein FliR [Shigella flexneri 2a str. 2457T] gi|56383559|gb|AAN43542.2| flagellar biosynthetic protein FliR [Shigella flexneri 2a str. 301] gi|110615467|gb|ABF04134.1| flagellar biosynthetic protein FliR [Shigella flexneri 5 str. 8401] gi|281601389|gb|ADA74373.1| Flagellar biosynthetic protein FliR [Shigella flexneri 2002017] gi|313650172|gb|EFS14585.1| flagellar biosynthetic protein FliR [Shigella flexneri 2a str. 2457T] gi|332756106|gb|EGJ86459.1| flagellar biosynthetic protein FliR [Shigella flexneri 4343-70] gi|332757213|gb|EGJ87550.1| flagellar biosynthetic protein FliR [Shigella flexneri 2747-71] gi|332766688|gb|EGJ96892.1| flagellar biosynthetic protein FliR [Shigella flexneri 2930-71] gi|333003308|gb|EGK22854.1| flagellar biosynthetic protein FliR [Shigella flexneri K-218] gi|333017636|gb|EGK36948.1| flagellar biosynthetic protein FliR [Shigella flexneri K-304] Length = 261 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|238764400|ref|ZP_04625350.1| Flagellar biosynthetic protein fliR [Yersinia kristensenii ATCC 33638] gi|238697426|gb|EEP90193.1| Flagellar biosynthetic protein fliR [Yersinia kristensenii ATCC 33638] Length = 260 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 106/246 (43%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T + + F + R+ + I P LS I +V++ A+ + ++ P L Sbjct: 6 TTQLSVWVSQYFWPLIRILALISTAPVLSEKQINRKVKVGLAILITFLIAPSLPPVNIPL 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + ++ +G GL ++ ++ +G VI +GL+ T S Sbjct: 66 VSSGAVWVAG---QQILIGAAIGLTMQFAFAAIRLSGEVIGLQMGLSFATFFDPSGGPNM 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L L+ ++ +L D H + L S+ T+PI E GN F + FM Sbjct: 123 PVLARLLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALAQAGSLIFMN 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L++ ++ H Sbjct: 183 GLMLALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLAMPLLAPFTEH 242 Query: 242 SFLYGF 247 F F Sbjct: 243 LFGEFF 248 >gi|82543589|ref|YP_407536.1| flagellar biosynthesis protein FliR [Shigella boydii Sb227] gi|81245000|gb|ABB65708.1| flagellar biosynthesis [Shigella boydii Sb227] gi|332096912|gb|EGJ01901.1| flagellar biosynthetic protein FliR [Shigella boydii 3594-74] Length = 261 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + V+ P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|297379398|gb|ADI34285.1| flagellar biosynthetic protein FliR [Helicobacter pylori v225d] Length = 255 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTTEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGVILIASAIMGRFKEEISLAF 248 >gi|261837621|gb|ACX97387.1| flagellar biosynthetic protein [Helicobacter pylori 51] Length = 255 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ RV + P +P+ VR ++ S + P L + + Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYAPEG---FII 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + ELFLG + +++ L F IS ++GL + ++ + + + ++ Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQALLLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248 >gi|319787088|ref|YP_004146563.1| flagellar biosynthetic protein FliR [Pseudoxanthomonas suwonensis 11-1] gi|317465600|gb|ADV27332.1| flagellar biosynthetic protein FliR [Pseudoxanthomonas suwonensis 11-1] Length = 264 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 92/238 (38%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ +M +P + +P+++R+ A A ++ L P L + Sbjct: 20 TVMWTMLRTGALLMAMPLIGTRAVPLRLRVLVAGALAMALAPMLPKPPEFAGLDAATVLG 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 V EL +G G +R+ + G +IS +GL+ + + I Sbjct: 80 --VARELAVGVTMGFCLRLVFEAGAYAGELISHGMGLSFAQMNDPLRGTSSGVVAQWFYI 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 L + D H V LV+SY +PIG ++ ++ V + L L+ P Sbjct: 138 AFGLLFFTSDGHLAVITMLVRSYQALPIGAAWVDAAAGLATPVELFSAVLRGGLGLALPL 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G+L K P + + P + G L L + I F F Sbjct: 198 MVAMLATNLTFGVLAKAAPSLHPVQLGLPVAVLTGLLLLSVLAGEIARPVQALFDTAF 255 >gi|300722652|ref|YP_003711942.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus nematophila ATCC 19061] gi|297629159|emb|CBJ89755.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus nematophila ATCC 19061] Length = 260 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ F + R+ + + P S +P++VR+ A+ + +L+P + + Sbjct: 12 LVSDFFWPLVRLLALFSIAPIFSEKQMPIKVRIGLALVITALLVPSI---PSPHIPIFSI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +++ ++ +G GL I++ ++ G ++ +GL+ T + L+ + Sbjct: 69 AGIWVLIQQILIGVALGLTIQIAFAVVRHAGEILGLQMGLSFATFFDPTGGPNMPILSRI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L D H + LV ++ TIPI F F+ + L+ Sbjct: 129 LNMLMMLLFLAFDGHLWLLSILVDTFHTIPIQVTQLNPKGFLLLAQSASMIFVNGMMLAM 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ N ++G+LN++ PQ+ ++ + P + +G L L I ++ F F Sbjct: 189 PMITLLLILNFALGMLNRMTPQLSVFVVGFPLTLTVGIFTLSLLIPMLGPFTERLFGEMF 248 >gi|187926925|ref|YP_001893270.1| flagellar biosynthetic protein FliR [Ralstonia pickettii 12J] gi|241665254|ref|YP_002983613.1| flagellar biosynthetic protein FliR [Ralstonia pickettii 12D] gi|187728679|gb|ACD29843.1| flagellar biosynthetic protein FliR [Ralstonia pickettii 12J] gi|240867281|gb|ACS64941.1| flagellar biosynthetic protein FliR [Ralstonia pickettii 12D] Length = 262 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 93/241 (38%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV + I + P + + +P +++ + ++ L P L + + Sbjct: 11 GWIAMYWWPLVRVLAFIAMAPPFANTEVPTSIKIALGVIITVALAPMLPVPVGVSVGSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ + +G G +++ + G V+S +GL + + + + L Sbjct: 71 GLWITLL--QAVIGLSLGFCVQLVFSAISGAGEVMSVQMGLGFASLLDPQQTESSMLLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I + + A D H + +AL S+ +P+ + + F + +R++ Sbjct: 129 FISLTAITAFIAGDGHLVLLHALFDSFTALPVSAAPLANPGWQTLAGGGTMVFALAVRIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + +V N+ +L++ + + + + +G + + + + + S + Sbjct: 189 LPIIAIMLVVNLGFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|317153079|ref|YP_004121127.1| flagellar biosynthetic protein FliR [Desulfovibrio aespoeensis Aspo-2] gi|316943330|gb|ADU62381.1| flagellar biosynthetic protein FliR [Desulfovibrio aespoeensis Aspo-2] Length = 261 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 103/227 (45%), Gaps = 1/227 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M+S FL + R+ + L+P + IP V+ + S+ + P L + N Sbjct: 11 MLSFFLTLFRISVVLFLMPFFGGNSIPTLVKGALVLVLSLAVWPQLSFPGSMLP-ANGLD 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + + E+ LG + GL + +QF G +I +G + + + + Sbjct: 70 ITIMFLGEVLLGLILGLTVNFLFGAIQFGGQIIGFQMGFAMVSVVDPISGTTNAVTAHFL 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L V++ H Q+ AL S+ IP G L ++ + F+++ F + +R+++P Sbjct: 130 YMCTMLTFLVLNGHLQLINALGMSFQYIPPGGLLITPSLATQFLSLSAIMFTLAIRIAAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + + ++++ L+++ PQ+ + + P I +G FL I+ Sbjct: 190 VMAALFLVDLALALISRAAPQMHVLILGFPIKITVGFFFLGFLFTIM 236 >gi|229528867|ref|ZP_04418257.1| flagellar biosynthesis protein FliR [Vibrio cholerae 12129(1)] gi|229332641|gb|EEN98127.1| flagellar biosynthesis protein FliR [Vibrio cholerae 12129(1)] Length = 260 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 93/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++P +VRL +A + ++P + ++ Sbjct: 11 FIANYFWPYMRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G G++ + G ++ L + + ++ L L Sbjct: 71 GF-MITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L V D H ++ +V S+ ++PIG F L F L +S Sbjct: 130 FMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L + + + + Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEA 248 >gi|218554530|ref|YP_002387443.1| flagellar biosynthesis protein FliR [Escherichia coli IAI1] gi|218689945|ref|YP_002398157.1| flagellar biosynthesis protein FliR [Escherichia coli ED1a] gi|301018200|ref|ZP_07182715.1| flagellar biosynthetic protein FliR [Escherichia coli MS 69-1] gi|301644591|ref|ZP_07244580.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1] gi|218361298|emb|CAQ98882.1| flagellar export pore protein [Escherichia coli IAI1] gi|218427509|emb|CAR08404.2| flagellar export pore protein [Escherichia coli ED1a] gi|300399787|gb|EFJ83325.1| flagellar biosynthetic protein FliR [Escherichia coli MS 69-1] gi|301077066|gb|EFK91872.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1] Length = 261 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|238794005|ref|ZP_04637623.1| Flagellar biosynthetic protein fliR [Yersinia intermedia ATCC 29909] gi|238726637|gb|EEQ18173.1| Flagellar biosynthetic protein fliR [Yersinia intermedia ATCC 29909] Length = 260 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T + + F + RV + I P LS I +V++ A+ + ++ P L Sbjct: 6 TTQLSVWVSQYFWPLIRVLALITTAPVLSEKQINRKVKVGLALLITFLIAPSLPPVNIPL 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + ++ +G GL ++ ++ G VI +GL+ T S Sbjct: 66 VSTGAVWVA---AQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNM 122 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L L+ ++ LL D H + L S+ T+PI E GN F + FM Sbjct: 123 PVLARLLNLLALLLFLTFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMN 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + + N+++G+LN++ PQ+ ++ I P + +G + + L + ++ H Sbjct: 183 GLMLALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISIGLIMPLLPPFAEH 242 Query: 242 SFLYGF 247 F F Sbjct: 243 LFGEVF 248 >gi|323968366|gb|EGB63773.1| flagellar biosynthetic protein FliR [Escherichia coli M863] gi|327253082|gb|EGE64736.1| flagellar biosynthetic protein FliR [Escherichia coli STEC_7v] Length = 261 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|292487980|ref|YP_003530857.1| flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430] gi|292899200|ref|YP_003538569.1| flagellar biosynthetic protein FliR [Erwinia amylovora ATCC 49946] gi|291199048|emb|CBJ46159.1| flagellar biosynthetic protein FliR [Erwinia amylovora ATCC 49946] gi|291553404|emb|CBA20449.1| Flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430] gi|312172105|emb|CBX80362.1| Flagellar biosynthetic protein FliR [Erwinia amylovora ATCC BAA-2158] Length = 261 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + LF + RV + IM P LS I +V++ + + VL+P L T + Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKSISRKVKIGLGVMITWVLIPSLPPT---NVTLFSV 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G G ++ ++ G VI +GL+ T L L Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + + +S+ T+PIG E GN F + F+ +RL+ Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVAESFQTLPIGGEPLNGNAFMALTESANLIFLNGMRLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F Sbjct: 189 PLITLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLFSEIF 248 >gi|126738572|ref|ZP_01754277.1| flagellar biosynthetic protein FliR [Roseobacter sp. SK209-2-6] gi|126720371|gb|EBA17077.1| flagellar biosynthetic protein FliR [Roseobacter sp. SK209-2-6] Length = 259 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 121/238 (50%), Gaps = 5/238 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ RV + +LP Y+PM+V+L A+AF+ V+ P L + V + Sbjct: 19 WHFAIVFLRVAAMSSVLPAFGEQYVPMRVKLAIAIAFTFVVAPALPQIGAPDHVV---LF 75 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 +LV+ E +G G+ +R++ +GLQ G++ + + L+ +G + A + +++ Sbjct: 76 GRLVVSEAIIGLALGMGVRLFIMGLQTAGTIAAQSTSLS--QVLGGIGAEAMPAIGAVLM 133 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + GL ++ H ++ L+ SY P+G+ V+ + +F + L++PF Sbjct: 134 VGGLALAVMMGLHVRIAEFLIYSYQFFPVGEFPAASMFSKWGVHRISQSFYMAFTLAAPF 193 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L +++N+++G++N+ +PQ+ ++F+ P + G L L + +I+ + + + F Sbjct: 194 LVTAVIYNLTLGVINRAMPQLMVFFVGAPVITLGGMLILMVGSPLILDVWMRALMAFF 251 >gi|331640692|ref|ZP_08341839.1| flagellar biosynthetic protein FliR [Escherichia coli H736] gi|331040066|gb|EGI12274.1| flagellar biosynthetic protein FliR [Escherichia coli H736] Length = 277 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 29 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 86 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 87 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 146 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 147 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 205 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 206 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 260 >gi|331645395|ref|ZP_08346499.1| flagellar biosynthetic protein FliR [Escherichia coli M605] gi|331045557|gb|EGI17683.1| flagellar biosynthetic protein FliR [Escherichia coli M605] Length = 277 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + +VR+ ++A +I++ P + + + + Sbjct: 29 LALGLWFPFVRIMAFLRYMPVLDNSALTARVRIILSLALAIIITPLIP--HPIPHNLLSL 86 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 87 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 146 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 147 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 205 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + +G + + + + H Sbjct: 206 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLLYNLPDHYLHL 260 >gi|323977869|gb|EGB72955.1| flagellar biosynthetic protein FliR [Escherichia coli TW10509] Length = 261 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|295111380|emb|CBL28130.1| Flagellar biosynthesis pathway, component FliR [Synergistetes bacterium SGP1] Length = 264 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 1/229 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW-DTIDLQNFVNRAYYSKLVMVE 76 R + P + P VR FA + L + L F + + L + E Sbjct: 20 RFVGLVFSAPVFTSVMAPTPVRYLFAALLTFSAAGGLGGAEVPLFYFDSVFSIALLGVRE 79 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G G L + + L+ G + T IG ++ + + + + L ++GL Sbjct: 80 VLIGVALGFLSALPLVALRVAGEQVGTVIGFSMAQVLDPTTQTESSIIGQLEFLVGLWFY 139 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 + + H + A+++S P+G+ L F LQ F++ +R++ PF ++ Sbjct: 140 YHWNGHLLMIQAVMESVRLAPVGRLLPFPPDLIEVGTWLQDLFILAMRITLPFFCSLVLA 199 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++ +G L + VPQ+ I+ + P + LG + L + + V F Sbjct: 200 DVGLGFLARTVPQMNIFVLGLPIKVALGFMVLAAVLPLTVDLIYTQFER 248 >gi|74312490|ref|YP_310909.1| flagellar biosynthesis protein FliR [Shigella sonnei Ss046] gi|73855967|gb|AAZ88674.1| flagellar biosynthesis [Shigella sonnei Ss046] gi|320184488|gb|EFW59292.1| Flagellar biosynthesis protein FliR [Shigella flexneri CDC 796-83] gi|323168929|gb|EFZ54609.1| flagellar biosynthetic protein FliR [Shigella sonnei 53G] Length = 261 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + V+ P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|212709500|ref|ZP_03317628.1| hypothetical protein PROVALCAL_00542 [Providencia alcalifaciens DSM 30120] gi|212687838|gb|EEB47366.1| hypothetical protein PROVALCAL_00542 [Providencia alcalifaciens DSM 30120] Length = 259 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F R + P + +VR+ A +V+ P L T + Sbjct: 11 LWLSQGFYPFVRFLALFGTAPFFNEKQAISKVRIALAFFTVLVISPQLPITT---IPLFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + + ++ +G GL +++ ++ G VI +GL+ T + L Sbjct: 68 AMGLWVTVQQIVIGAAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ +I LL D H + Y L S+ +PI + F F+ T F+ L L+ Sbjct: 128 ILNLITLLLFLSFDGHLWLIYILTNSFELLPIQTTPLHRDGFWIFLQFANTIFINGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 PF+ +++ N+S+G+LN++ PQ+ ++ + P + +G L L I I+ Sbjct: 188 LPFITLFLILNLSLGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYTERLIHQA 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|300822280|ref|ZP_07102421.1| flagellar biosynthetic protein FliR [Escherichia coli MS 119-7] gi|300525163|gb|EFK46232.1| flagellar biosynthetic protein FliR [Escherichia coli MS 119-7] gi|309702239|emb|CBJ01556.1| flagellar biosynthesis protein FliR [Escherichia coli ETEC H10407] gi|323937220|gb|EGB33500.1| flagellar biosynthetic protein FliR [Escherichia coli E1520] Length = 261 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFSAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + L ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|91211168|ref|YP_541154.1| flagellar biosynthesis protein FliR [Escherichia coli UTI89] gi|117624090|ref|YP_853003.1| flagellar biosynthesis protein FliR [Escherichia coli APEC O1] gi|170679575|ref|YP_001743295.1| flagellar biosynthesis protein FliR [Escherichia coli SMS-3-5] gi|191168278|ref|ZP_03030071.1| flagellar biosynthetic protein FliR [Escherichia coli B7A] gi|193066372|ref|ZP_03047420.1| flagellar biosynthetic protein FliR [Escherichia coli E22] gi|194439589|ref|ZP_03071662.1| flagellar biosynthetic protein FliR [Escherichia coli 101-1] gi|209919372|ref|YP_002293456.1| flagellar biosynthesis protein FliR [Escherichia coli SE11] gi|218558807|ref|YP_002391720.1| flagellar biosynthesis protein FliR [Escherichia coli S88] gi|218705443|ref|YP_002412962.1| flagellar biosynthesis protein FliR [Escherichia coli UMN026] gi|260844349|ref|YP_003222127.1| flagellar export pore protein FliR [Escherichia coli O103:H2 str. 12009] gi|293405433|ref|ZP_06649425.1| flagellar biosynthetic protein fliR [Escherichia coli FVEC1412] gi|298381077|ref|ZP_06990676.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302] gi|300899207|ref|ZP_07117483.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1] gi|300923887|ref|ZP_07139902.1| flagellar biosynthetic protein FliR [Escherichia coli MS 182-1] gi|300931163|ref|ZP_07146510.1| flagellar biosynthetic protein FliR [Escherichia coli MS 187-1] gi|301327737|ref|ZP_07220942.1| flagellar biosynthetic protein FliR [Escherichia coli MS 78-1] gi|307312464|ref|ZP_07592098.1| flagellar biosynthetic protein FliR [Escherichia coli W] gi|331673463|ref|ZP_08374231.1| flagellar biosynthetic protein FliR [Escherichia coli TA280] gi|91072742|gb|ABE07623.1| flagellar biosynthetic protein FliR [Escherichia coli UTI89] gi|115513214|gb|ABJ01289.1| flagellar biosynthetic protein FliR [Escherichia coli APEC O1] gi|170517293|gb|ACB15471.1| flagellar biosynthetic protein FliR [Escherichia coli SMS-3-5] gi|190901650|gb|EDV61406.1| flagellar biosynthetic protein FliR [Escherichia coli B7A] gi|192925957|gb|EDV80603.1| flagellar biosynthetic protein FliR [Escherichia coli E22] gi|194421498|gb|EDX37512.1| flagellar biosynthetic protein FliR [Escherichia coli 101-1] gi|209912631|dbj|BAG77705.1| flagellar biosynthetic protein FliR [Escherichia coli SE11] gi|218365576|emb|CAR03303.1| flagellar export pore protein [Escherichia coli S88] gi|218432540|emb|CAR13433.1| flagellar export pore protein [Escherichia coli UMN026] gi|257759496|dbj|BAI30993.1| flagellar export pore protein FliR [Escherichia coli O103:H2 str. 12009] gi|284921858|emb|CBG34933.1| flagellar biosynthesis protein FliR [Escherichia coli 042] gi|291427641|gb|EFF00668.1| flagellar biosynthetic protein fliR [Escherichia coli FVEC1412] gi|294491448|gb|ADE90204.1| flagellar biosynthetic protein FliR [Escherichia coli IHE3034] gi|298278519|gb|EFI20033.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302] gi|300357188|gb|EFJ73058.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1] gi|300419850|gb|EFK03161.1| flagellar biosynthetic protein FliR [Escherichia coli MS 182-1] gi|300461020|gb|EFK24513.1| flagellar biosynthetic protein FliR [Escherichia coli MS 187-1] gi|300845737|gb|EFK73497.1| flagellar biosynthetic protein FliR [Escherichia coli MS 78-1] gi|306907635|gb|EFN38138.1| flagellar biosynthetic protein FliR [Escherichia coli W] gi|307626574|gb|ADN70878.1| flagellar biosynthesis protein FliR [Escherichia coli UM146] gi|315061250|gb|ADT75577.1| flagellar export pore protein [Escherichia coli W] gi|320194337|gb|EFW68968.1| Flagellar biosynthesis protein FliR [Escherichia coli WV_060327] gi|320198641|gb|EFW73241.1| Flagellar biosynthesis protein FliR [Escherichia coli EC4100B] gi|323183934|gb|EFZ69321.1| flagellar biosynthetic protein FliR [Escherichia coli 1357] gi|323378173|gb|ADX50441.1| flagellar biosynthetic protein FliR [Escherichia coli KO11] gi|323948346|gb|EGB44333.1| flagellar biosynthetic protein FliR [Escherichia coli H120] gi|323952443|gb|EGB48316.1| flagellar biosynthetic protein FliR [Escherichia coli H252] gi|323961994|gb|EGB57593.1| flagellar biosynthetic protein FliR [Escherichia coli H489] gi|323972750|gb|EGB67950.1| flagellar biosynthetic protein FliR [Escherichia coli TA007] gi|324118999|gb|EGC12888.1| flagellar biosynthetic protein FliR [Escherichia coli E1167] gi|331069661|gb|EGI41048.1| flagellar biosynthetic protein FliR [Escherichia coli TA280] gi|332343676|gb|AEE57010.1| flagellar biosynthetic protein FliR [Escherichia coli UMNK88] Length = 261 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|188534132|ref|YP_001907929.1| flagellar biosynthesis protein FliR [Erwinia tasmaniensis Et1/99] gi|188029174|emb|CAO97046.1| Flagellar biosynthesis protein [Erwinia tasmaniensis Et1/99] Length = 263 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + LF + RV + IM P LS I +V++ + + VL+P L T V Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKAISRKVKIGLGVMITWVLVPSLPPTHVTLFSVGGF 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G G ++ ++ G VI +GL+ T L L Sbjct: 72 W---LLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + + S+ T+PIG E GN F + F+ +RL+ Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVADSFHTLPIGAEPLNGNAFMALTKAANLIFLNGMRLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F Sbjct: 189 PLITLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSIGMIFIILMMPLLAPFCEHLFSEIF 248 >gi|157371199|ref|YP_001479188.1| flagellar biosynthesis protein FliR [Serratia proteamaculans 568] gi|157322963|gb|ABV42060.1| flagellar biosynthetic protein FliR [Serratia proteamaculans 568] Length = 260 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F + R+ + I P S I +V++ I++ P L + + Sbjct: 11 VWLSQYFWPLLRILALISTAPVFSEKQISKKVKIGLGGLIVILIAPGLPVST---VPIFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L ++ +G GL ++ ++ G VI +GL+ T S L Sbjct: 68 AAGLWLAAQQILIGVALGLTMQFAFAAIRLAGEVIGMQMGLSFATFFDPSGGPNTPVLAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ +L + H + LV S+ T+PI E GN F + F+ + L+ Sbjct: 128 LLNLLAMLLFLSFNGHLWLISLLVDSFHTLPIQAEPLNGNGFLALTQAGSLIFINGMMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++GLLN++ PQ+ ++ I P + +G + + + + ++ H F Sbjct: 188 LPLICLLLTLNMALGLLNRMTPQLSVFVIGFPVTMTIGIMTIGMMMPMLAPFCEHLFGEF 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|293415260|ref|ZP_06657903.1| flagellar biosynthetic protein FliR [Escherichia coli B185] gi|291432908|gb|EFF05887.1| flagellar biosynthetic protein FliR [Escherichia coli B185] Length = 261 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|16129897|ref|NP_416460.1| flagellar export pore protein [Escherichia coli str. K-12 substr. MG1655] gi|89108782|ref|AP_002562.1| flagellar export pore protein [Escherichia coli str. K-12 substr. W3110] gi|170081594|ref|YP_001730914.1| flagellar export pore protein [Escherichia coli str. K-12 substr. DH10B] gi|238901155|ref|YP_002926951.1| flagellar export pore protein [Escherichia coli BW2952] gi|253773101|ref|YP_003035932.1| flagellar biosynthesis protein FliR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|2506425|sp|P33135|FLIR_ECOLI RecName: Full=Flagellar biosynthetic protein fliR gi|1736616|dbj|BAA15775.1| flagellar export pore protein [Escherichia coli str. K12 substr. W3110] gi|1788261|gb|AAC75017.1| flagellar export pore protein [Escherichia coli str. K-12 substr. MG1655] gi|169889429|gb|ACB03136.1| flagellar export pore protein [Escherichia coli str. K-12 substr. DH10B] gi|238861104|gb|ACR63102.1| flagellar export pore protein [Escherichia coli BW2952] gi|253324145|gb|ACT28747.1| flagellar biosynthetic protein FliR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448937|gb|ACX39359.1| flagellar biosynthetic protein FliR [Escherichia coli DH1] gi|315136587|dbj|BAJ43746.1| flagellar biosynthesis protein FliR [Escherichia coli DH1] Length = 261 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|255323533|ref|ZP_05364664.1| flagellar biosynthetic protein FliR [Campylobacter showae RM3277] gi|255299570|gb|EET78856.1| flagellar biosynthetic protein FliR [Campylobacter showae RM3277] Length = 253 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 5/234 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L+ R+G ++ P IPM V+ F+ ++ L P Y Sbjct: 12 VITFMLLFARIGGLMLFFPFYGHEQIPMSVKTAFSFLLTLFLFPLASIKNG-----EIYY 66 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E LG GLL+ + LQ G IS +G ++ + + L+ ++++I Sbjct: 67 LAVEIVSEAALGVCAGLLLHIVFASLQLAGEQISMIMGFSMASVLDPQTGLSSPVISNII 126 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L+ D HH + + S +P+G +I + F +S P Sbjct: 127 NFLALMTFLAFDGHHLILLFISNSLTHVPLGGFYPSPDIVQYASKSMINLFTFGFIISFP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 L ++ ++ G+L K +PQ + + P I +G L + ++ F Sbjct: 187 ILALSLLSDLIFGMLMKTMPQFNLLVVGYPIKITIGFAVLIAILAGMMELFRQL 240 >gi|347245|gb|AAC36861.1| fliR [Escherichia coli] Length = 261 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLAVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|332095510|gb|EGJ00526.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 155-74] Length = 261 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + ++ H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLVAPFCEHLFSEMF 248 >gi|293410306|ref|ZP_06653882.1| flagellar biosynthetic protein FliR [Escherichia coli B354] gi|331663446|ref|ZP_08364356.1| flagellar biosynthetic protein FliR [Escherichia coli TA143] gi|291470774|gb|EFF13258.1| flagellar biosynthetic protein FliR [Escherichia coli B354] gi|331059245|gb|EGI31222.1| flagellar biosynthetic protein FliR [Escherichia coli TA143] Length = 261 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|289578416|ref|YP_003477043.1| flagellar biosynthetic protein FliR [Thermoanaerobacter italicus Ab9] gi|297544692|ref|YP_003676994.1| flagellar biosynthetic protein FliR [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528129|gb|ADD02481.1| flagellar biosynthetic protein FliR [Thermoanaerobacter italicus Ab9] gi|296842467|gb|ADH60983.1| flagellar biosynthetic protein FliR [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 260 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 100/236 (42%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+ +L P +P ++ ++++ + N Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTIFKIGLGFFAAVIVFDTMGSV--DLQTNNVFD 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y +V+ E +G V GL + + G +I +G + + I + + I Sbjct: 69 YFIVVISEFTVGLVIGLASMISFSAIHLAGQLIDYQLGFGIVNILDIHSEAQVPLMGNFI 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L +++ H+ +F L KS IPIG+ N + M+ F++ R+S+ Sbjct: 129 YILTILIFMLMNGHYILFTMLAKSVDIIPIGEVAFNLSGMSQVMTKMVSDMFILGFRISA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++ +G++++ +PQ+ ++ I P I +G L + + + + F Sbjct: 189 PIILTTLLSDLVLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLAIIDFMF 244 >gi|259908770|ref|YP_002649126.1| flagellar biosynthesis protein FliR [Erwinia pyrifoliae Ep1/96] gi|224964392|emb|CAX55901.1| Flagellar biosynthesis protein [Erwinia pyrifoliae Ep1/96] gi|283478746|emb|CAY74662.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae DSM 12163] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + LF + RV + IM P LS I +V++ + + VL+P L T + Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKSISRKVKIGLGVMITWVLIPSLPPT---NVTLFSV 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G G ++ ++ G VI +GL+ T L L Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + + S+ T+PIG E GN F + F+ +RL+ Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVADSFQTLPIGGEPLNGNAFMALTKAANIIFLNGMRLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+ +GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F Sbjct: 189 PLITLLLTLNLGLGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLFSEIF 248 >gi|300940405|ref|ZP_07154990.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1] gi|306814227|ref|ZP_07448393.1| flagellar biosynthesis protein FliR [Escherichia coli NC101] gi|331657996|ref|ZP_08358958.1| flagellar biosynthetic protein FliR [Escherichia coli TA206] gi|300454799|gb|EFK18292.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1] gi|305852386|gb|EFM52837.1| flagellar biosynthesis protein FliR [Escherichia coli NC101] gi|331056244|gb|EGI28253.1| flagellar biosynthetic protein FliR [Escherichia coli TA206] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|300904840|ref|ZP_07122666.1| flagellar biosynthetic protein FliR [Escherichia coli MS 84-1] gi|301304255|ref|ZP_07210370.1| flagellar biosynthetic protein FliR [Escherichia coli MS 124-1] gi|300403267|gb|EFJ86805.1| flagellar biosynthetic protein FliR [Escherichia coli MS 84-1] gi|300840512|gb|EFK68272.1| flagellar biosynthetic protein FliR [Escherichia coli MS 124-1] gi|315257218|gb|EFU37186.1| flagellar biosynthetic protein FliR [Escherichia coli MS 85-1] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + L ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|15802385|ref|NP_288411.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 EDL933] gi|15831943|ref|NP_310716.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. Sakai] gi|168751879|ref|ZP_02776901.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4113] gi|168758264|ref|ZP_02783271.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4401] gi|168764424|ref|ZP_02789431.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4501] gi|168771557|ref|ZP_02796564.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4486] gi|168777377|ref|ZP_02802384.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4196] gi|168783347|ref|ZP_02808354.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4076] gi|168790290|ref|ZP_02815297.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC869] gi|168802297|ref|ZP_02827304.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC508] gi|195939256|ref|ZP_03084638.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. EC4024] gi|208810191|ref|ZP_03252067.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4206] gi|208816620|ref|ZP_03257740.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4045] gi|208820873|ref|ZP_03261193.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4042] gi|209399396|ref|YP_002271067.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4115] gi|217328658|ref|ZP_03444739.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. TW14588] gi|254793600|ref|YP_003078437.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. TW14359] gi|260868543|ref|YP_003234945.1| flagellar export pore protein FliR [Escherichia coli O111:H- str. 11128] gi|261227555|ref|ZP_05941836.1| flagellar export pore protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254621|ref|ZP_05947154.1| flagellar export pore protein FliR [Escherichia coli O157:H7 str. FRIK966] gi|291283127|ref|YP_003499945.1| Flagellar biosynthetic protein FliR [Escherichia coli O55:H7 str. CB9615] gi|331653362|ref|ZP_08354367.1| flagellar biosynthetic protein FliR [Escherichia coli M718] gi|12516057|gb|AAG56965.1|AE005417_7 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933] gi|13362157|dbj|BAB36112.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. Sakai] gi|187767391|gb|EDU31235.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4196] gi|188014181|gb|EDU52303.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4113] gi|188999260|gb|EDU68246.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4076] gi|189354885|gb|EDU73304.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4401] gi|189359734|gb|EDU78153.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4486] gi|189365568|gb|EDU83984.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4501] gi|189370195|gb|EDU88611.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC869] gi|189375691|gb|EDU94107.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC508] gi|208724707|gb|EDZ74414.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4206] gi|208730963|gb|EDZ79652.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4045] gi|208740996|gb|EDZ88678.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4042] gi|209160796|gb|ACI38229.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. EC4115] gi|209766768|gb|ACI81696.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|209766770|gb|ACI81697.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|209766772|gb|ACI81698.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|209766774|gb|ACI81699.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|209766776|gb|ACI81700.1| flagellar biosynthetic protein FliR [Escherichia coli] gi|217318005|gb|EEC26432.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str. TW14588] gi|254593000|gb|ACT72361.1| flagellar export pore protein [Escherichia coli O157:H7 str. TW14359] gi|257764899|dbj|BAI36394.1| flagellar export pore protein FliR [Escherichia coli O111:H- str. 11128] gi|290763000|gb|ADD56961.1| Flagellar biosynthetic protein FliR [Escherichia coli O55:H7 str. CB9615] gi|320191924|gb|EFW66571.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. EC1212] gi|320641798|gb|EFX11186.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. G5101] gi|320647157|gb|EFX15990.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H- str. 493-89] gi|320652441|gb|EFX20739.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H- str. H 2687] gi|320658043|gb|EFX25805.1| flagellar biosynthesis protein FliR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658615|gb|EFX26309.1| flagellar biosynthesis protein FliR [Escherichia coli O55:H7 str. USDA 5905] gi|323174670|gb|EFZ60290.1| flagellar biosynthetic protein FliR [Escherichia coli LT-68] gi|323180797|gb|EFZ66337.1| flagellar biosynthetic protein FliR [Escherichia coli 1180] gi|326342361|gb|EGD66142.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. 1044] gi|326344865|gb|EGD68612.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. 1125] gi|331049460|gb|EGI21532.1| flagellar biosynthetic protein FliR [Escherichia coli M718] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|325917836|ref|ZP_08180015.1| flagellar biosynthetic protein FliR [Xanthomonas vesicatoria ATCC 35937] gi|325535947|gb|EGD07764.1| flagellar biosynthetic protein FliR [Xanthomonas vesicatoria ATCC 35937] Length = 263 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A S+VL P L + F +A S Sbjct: 20 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLSMVLAPILPPVPEWDGFTAQAVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + I Sbjct: 80 --IARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYI 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG + F+ + L L+ P Sbjct: 138 GFGLLFFAANGHLAVISLLVDSYKALPIGTAIPDARAFAEVAPTLFLQIMRGGLTLALPM 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F F Sbjct: 198 MVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 255 >gi|326389465|ref|ZP_08211032.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus JW 200] gi|325994470|gb|EGD52895.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus JW 200] Length = 260 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 102/236 (43%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+ +L P +P ++ ++++ + N Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPV--DLQINNVLD 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y +V+ E +G V GL + + G +I +G L + I + + I Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L +++ H+ +F L KS IP+G+ N ++ M+ F++ R+S+ Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIPVGKVVFNLPDMSQVLTKMVSDMFILGFRISA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMF 244 >gi|289548903|ref|YP_003473891.1| flagellar biosynthetic protein FliR [Thermocrinis albus DSM 14484] gi|289182520|gb|ADC89764.1| flagellar biosynthetic protein FliR [Thermocrinis albus DSM 14484] Length = 253 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 5/233 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L RV + + L+P ++P ++ + A S+ + D Q A Sbjct: 12 LITFMLYHIRVTAFLFLVPFFGKEFLPQTFKVFLSTALSLSIF----MYTDPQPLSPEAP 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 V+ E LG V GL++R+ Q G +IS +IGL+ T + + + + Sbjct: 68 LLTYVVKEFLLGFVAGLVLRLVFDAAQTAGEIISYSIGLSYATLFVPQLA-QMSLFSLFL 126 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + I VF ALVKS+ TIP+G + V + +F + R++ P Sbjct: 127 SLLTTVTFLQIGGPEVVFLALVKSFQTIPVGSFPLWSLDPQQMVKLFHESFSLGFRVALP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ N+ + L+N+L+PQ+ ++ + P + +G + L L +I + Sbjct: 187 LVISTLLVNLGLALINRLIPQVNVFMVGLPLQLMVGYIILFLVFPLITDLVAD 239 >gi|194429944|ref|ZP_03062454.1| flagellar biosynthetic protein FliR [Escherichia coli B171] gi|194412033|gb|EDX28345.1| flagellar biosynthetic protein FliR [Escherichia coli B171] gi|323158571|gb|EFZ44585.1| flagellar biosynthetic protein FliR [Escherichia coli E128010] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGRLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|74101642|gb|AAZ99732.1| FliRL [Aeromonas hydrophila] Length = 260 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + ++P IP QVRL A S+++ P L + F Sbjct: 14 AWLGQWWWPFIRIATAFWVMPVFGDGRIPPQVRLLLAFIVSLLIAPMLKKMPVVDPFSTG 73 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L + +L G + GL +++ + + G ++S +G + S+ ++ Sbjct: 74 AL--VLTVEQLLFGLLFGLCVQMLFMIMTMAGQILSMQMGPAMAVMNDPSNGDFAPIVSQ 131 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ I L ++ H LV+S + P G L+ + + + L L+ Sbjct: 132 LMLIFCSLLFLGLNGHLVTLDVLVQSLRSWPPGSSLDLLD-MKGIIGLFGWCIGAALILT 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ N++ G++N+ P + I+ + P + LG + + +SI + ++ Sbjct: 191 LPAVVAMLMVNLTFGVMNRTAPSLNIFSLGFPMTLLLGLVTMAISISGVPARYLDL 246 >gi|300951575|ref|ZP_07165408.1| flagellar biosynthetic protein FliR [Escherichia coli MS 116-1] gi|300956534|ref|ZP_07168816.1| flagellar biosynthetic protein FliR [Escherichia coli MS 175-1] gi|300316634|gb|EFJ66418.1| flagellar biosynthetic protein FliR [Escherichia coli MS 175-1] gi|300449202|gb|EFK12822.1| flagellar biosynthetic protein FliR [Escherichia coli MS 116-1] gi|323940391|gb|EGB36582.1| flagellar biosynthetic protein FliR [Escherichia coli E482] gi|332093093|gb|EGI98157.1| flagellar biosynthetic protein FliR [Shigella boydii 5216-82] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGVALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|126176174|ref|YP_001052323.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155] gi|125999379|gb|ABN63454.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155] Length = 259 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 111/246 (45%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 + +++ SL+ CR+ M++P L SY+P VR+ A++ + ++ P L + Sbjct: 6 STELSMLIGSLWWPFCRIMGAFMIMPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVD 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + L + +L +G + L + + + G+++S +GL + ++ Sbjct: 66 ALSLGSLF--LAVEQLLIGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTN 123 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L+ + I G L +D H +V S+ PIG + F ++ + F Sbjct: 124 PILSEWLQIFGTLIFLALDGHLVGLNIIVDSFRLWPIGNGI-FDLPLMGLISRMGWLFAA 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + ++ NI+ G+L++ P + I+ + P + +G + + LS+ I ++S Sbjct: 183 SLMLAIPAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRYSD 242 Query: 242 SFLYGF 247 L Sbjct: 243 LCLDAL 248 >gi|310767332|gb|ADP12282.1| flagellar biosynthesis protein FliR [Erwinia sp. Ejp617] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 108/240 (45%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + LF + RV + IM P LS + +V++ + + VL+P L T + Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKSVSRKVKIGLGVMITWVLIPSLPPT---NVTLFSV 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G G ++ ++ G VI +GL+ T L L Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + + S+ T+PIG E GN F + F+ +RL+ Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVADSFQTLPIGGEPLNGNAFMALTKAANIIFLNGMRLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F Sbjct: 189 PLITLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLFSEIF 248 >gi|26248219|ref|NP_754259.1| flagellar biosynthesis protein FliR [Escherichia coli CFT073] gi|110642056|ref|YP_669786.1| flagellar biosynthesis protein FliR [Escherichia coli 536] gi|191173327|ref|ZP_03034857.1| flagellar biosynthetic protein FliR [Escherichia coli F11] gi|215487150|ref|YP_002329581.1| flagellar biosynthesis protein FliR [Escherichia coli O127:H6 str. E2348/69] gi|227885621|ref|ZP_04003426.1| flagellar biosynthesis protein FliR [Escherichia coli 83972] gi|237705909|ref|ZP_04536390.1| flagellar biosynthetic protein fliR [Escherichia sp. 3_2_53FAA] gi|300975535|ref|ZP_07173046.1| flagellar biosynthetic protein FliR [Escherichia coli MS 45-1] gi|300994265|ref|ZP_07180817.1| flagellar biosynthetic protein FliR [Escherichia coli MS 200-1] gi|301050689|ref|ZP_07197550.1| flagellar biosynthetic protein FliR [Escherichia coli MS 185-1] gi|312967147|ref|ZP_07781365.1| flagellar biosynthetic protein FliR [Escherichia coli 2362-75] gi|331647544|ref|ZP_08348636.1| flagellar biosynthetic protein FliR [Escherichia coli M605] gi|26108623|gb|AAN80826.1|AE016762_79 Flagellar biosynthetic protein fliR [Escherichia coli CFT073] gi|110343648|gb|ABG69885.1| flagellar biosynthetic protein FliR [Escherichia coli 536] gi|190906444|gb|EDV66053.1| flagellar biosynthetic protein FliR [Escherichia coli F11] gi|215265222|emb|CAS09612.1| flagellar export pore protein [Escherichia coli O127:H6 str. E2348/69] gi|222033689|emb|CAP76430.1| flagellar biosynthetic protein fliR [Escherichia coli LF82] gi|226900666|gb|EEH86925.1| flagellar biosynthetic protein fliR [Escherichia sp. 3_2_53FAA] gi|227837194|gb|EEJ47660.1| flagellar biosynthesis protein FliR [Escherichia coli 83972] gi|281179012|dbj|BAI55342.1| flagellar biosynthetic protein FliR [Escherichia coli SE15] gi|300297612|gb|EFJ53997.1| flagellar biosynthetic protein FliR [Escherichia coli MS 185-1] gi|300304930|gb|EFJ59450.1| flagellar biosynthetic protein FliR [Escherichia coli MS 200-1] gi|300410304|gb|EFJ93842.1| flagellar biosynthetic protein FliR [Escherichia coli MS 45-1] gi|307553963|gb|ADN46738.1| flagellar biosynthetic protein FliR [Escherichia coli ABU 83972] gi|312288611|gb|EFR16513.1| flagellar biosynthetic protein FliR [Escherichia coli 2362-75] gi|312946543|gb|ADR27370.1| flagellar biosynthesis protein FliR [Escherichia coli O83:H1 str. NRG 857C] gi|315286654|gb|EFU46087.1| flagellar biosynthetic protein FliR [Escherichia coli MS 110-3] gi|315290267|gb|EFU49645.1| flagellar biosynthetic protein FliR [Escherichia coli MS 153-1] gi|315296484|gb|EFU55781.1| flagellar biosynthetic protein FliR [Escherichia coli MS 16-3] gi|323186706|gb|EFZ72028.1| flagellar biosynthetic protein FliR [Escherichia coli RN587/1] gi|323956346|gb|EGB52089.1| flagellar biosynthetic protein FliR [Escherichia coli H263] gi|324005851|gb|EGB75070.1| flagellar biosynthetic protein FliR [Escherichia coli MS 57-2] gi|324013505|gb|EGB82724.1| flagellar biosynthetic protein FliR [Escherichia coli MS 60-1] gi|330911756|gb|EGH40266.1| flagellar biosynthesis protein FliR [Escherichia coli AA86] gi|331043268|gb|EGI15406.1| flagellar biosynthetic protein FliR [Escherichia coli M605] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|170019717|ref|YP_001724671.1| flagellar biosynthesis protein FliR [Escherichia coli ATCC 8739] gi|169754645|gb|ACA77344.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLVLTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|300693347|ref|YP_003749320.1| flir: flagellar biosynthesis inner membrane protein. flir/mope/spar family [Ralstonia solanacearum PSI07] gi|299075384|emb|CBJ34679.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Ralstonia solanacearum PSI07] Length = 262 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 97/241 (40%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV + I + P + + IP +++ F + ++ L P L + Sbjct: 11 GWIALYWWPLVRVLAFIAVAPPFANTEIPSSIKVAFGVVLTVALAPMLPVPPGVSVGSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G G+ +++ + G ++S IGL T + + + L Sbjct: 71 GLWITLL--QVAIGMALGVCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSMLLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I + + A D H + +AL S+ +P+ G + + F + +R++ Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGTAVFALAVRIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + +V N++ +L++ + + + + +G + + + + + S + Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|225181593|ref|ZP_03735034.1| flagellar biosynthetic protein FliR [Dethiobacter alkaliphilus AHT 1] gi|225167701|gb|EEG76511.1| flagellar biosynthetic protein FliR [Dethiobacter alkaliphilus AHT 1] Length = 253 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 1/232 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LFLI R+ + I +LP + IP ++ FA F+ ++ + + + YY Sbjct: 9 LFLIFVRLSALIAVLPFFTWRGIPALPKIGFAGVFAYLIFLASSPQ-EFEIPEHFYYYVL 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V E+ G G L+ + + G ++ GL + + T + Sbjct: 68 AVGSEVLFGLALGFLVLLIFAAARIAGQMVDVQAGLMMASVFDPQFGSQVTLFGQFYYLF 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L+ ++ HH +F A+ +S + G + + + + + F+I +L+ P + Sbjct: 128 ALVFYLTVNGHHMLFMAIARSIELVTPGGVVFSPQLIPNVMQFIFQMFIIAFQLAVPVVA 187 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 I ++++GLL+K VPQ+ ++ + P +G+ + L + F Sbjct: 188 VLIFSDLALGLLSKTVPQLHVFMVGMPLKVGVALFIIYLIFPYLAQVLETVF 239 >gi|157156975|ref|YP_001463252.1| flagellar biosynthesis protein FliR [Escherichia coli E24377A] gi|218695555|ref|YP_002403222.1| flagellar biosynthesis protein FliR [Escherichia coli 55989] gi|256022392|ref|ZP_05436257.1| flagellar biosynthesis protein FliR [Escherichia sp. 4_1_40B] gi|301029407|ref|ZP_07192501.1| flagellar biosynthetic protein FliR [Escherichia coli MS 196-1] gi|307138617|ref|ZP_07497973.1| flagellar biosynthesis protein FliR [Escherichia coli H736] gi|309795943|ref|ZP_07690356.1| flagellar biosynthetic protein FliR [Escherichia coli MS 145-7] gi|331642571|ref|ZP_08343706.1| flagellar biosynthetic protein FliR [Escherichia coli H736] gi|331668641|ref|ZP_08369489.1| flagellar biosynthetic protein FliR [Escherichia coli TA271] gi|331683502|ref|ZP_08384103.1| flagellar biosynthetic protein FliR [Escherichia coli H299] gi|157079005|gb|ABV18713.1| flagellar biosynthetic protein FliR [Escherichia coli E24377A] gi|218352287|emb|CAU98044.1| flagellar export pore protein [Escherichia coli 55989] gi|299877711|gb|EFI85922.1| flagellar biosynthetic protein FliR [Escherichia coli MS 196-1] gi|308120393|gb|EFO57655.1| flagellar biosynthetic protein FliR [Escherichia coli MS 145-7] gi|324018859|gb|EGB88078.1| flagellar biosynthetic protein FliR [Escherichia coli MS 117-3] gi|331039369|gb|EGI11589.1| flagellar biosynthetic protein FliR [Escherichia coli H736] gi|331063835|gb|EGI35746.1| flagellar biosynthetic protein FliR [Escherichia coli TA271] gi|331079717|gb|EGI50914.1| flagellar biosynthetic protein FliR [Escherichia coli H299] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|162147443|ref|YP_001601904.1| flagellar biosynthetic protein fliR [Gluconacetobacter diazotrophicus PAl 5] gi|161786020|emb|CAP55602.1| putative flagellar biosynthetic protein fliR [Gluconacetobacter diazotrophicus PAl 5] Length = 270 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 3/238 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT---IDLQNF 63 ++ +++CRV + +M PGL + PM+VR A++ ++ +LP + D + Sbjct: 14 VLATMFLVVLCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRLVEVSGTAL 73 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 + +V+ EL G G L R+ T+ + V++ GL + T Sbjct: 74 RMPSVAIAVVVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGLASVLQPDSELGASSTA 133 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 ++ + ++ + + A+ SY P G G++ S TF + L Sbjct: 134 ISHMASMLIPVIFLSTGLYALPLAAITGSYSLFPPGHMPMVGDMARSVTEATSQTFALAL 193 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +L++PF+ ++ +G+LN+L+P I +Y I+ P + G + L + I+++ + Sbjct: 194 QLAAPFVLIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLIQVMTGVWQE 251 >gi|157161421|ref|YP_001458739.1| flagellar biosynthesis protein FliR [Escherichia coli HS] gi|157067101|gb|ABV06356.1| flagellar biosynthetic protein FliR [Escherichia coli HS] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIASFCEHLFSEIF 248 >gi|331677832|ref|ZP_08378507.1| flagellar biosynthetic protein FliR [Escherichia coli H591] gi|331074292|gb|EGI45612.1| flagellar biosynthetic protein FliR [Escherichia coli H591] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLNLYFWPLLRVLTLISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248 >gi|254517019|ref|ZP_05129077.1| flagellar biosynthetic protein FliR [gamma proteobacterium NOR5-3] gi|219674524|gb|EED30892.1| flagellar biosynthetic protein FliR [gamma proteobacterium NOR5-3] Length = 256 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 110/241 (45%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ + R+ + ++ P S S I ++VR+ A+ S ++ P L T ++ Sbjct: 10 VLFHTYLWPFLRLSAMLLAAPIFSYSSISVRVRVLLAVLVSALVAPLLPVTPVVEPLSAL 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + E+ +G V G ++++ + G ++ ++GL ++ + + ++ Sbjct: 70 GL--VLALREVAIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMAVDPQNGVQVPVVSQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L ++ L ID H + A+V+S+ IP+G + +FS+ + F L L+ Sbjct: 128 LNVVLATLLFLAIDGHLMLITAVVESFELIPVGSAFSPEGMFSNVAALGTQLFASALLLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P L ++ N++ G++ + PQ+ I+ + P I G +F+ L++ + + G Sbjct: 188 LPALTAILMINVAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLALPMFISTLQRFLSLG 247 Query: 247 F 247 Sbjct: 248 L 248 >gi|300920169|ref|ZP_07136619.1| flagellar biosynthetic protein FliR [Escherichia coli MS 115-1] gi|300412826|gb|EFJ96136.1| flagellar biosynthetic protein FliR [Escherichia coli MS 115-1] Length = 261 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + +V ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLMVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|218133681|ref|ZP_03462485.1| hypothetical protein BACPEC_01550 [Bacteroides pectinophilus ATCC 43243] gi|217991056|gb|EEC57062.1| hypothetical protein BACPEC_01550 [Bacteroides pectinophilus ATCC 43243] Length = 260 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 108/234 (46%), Gaps = 2/234 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R+ + + P + + P +V++ F+ A +I++ + Y+ Sbjct: 14 FILILVRISTFVYAAPFFNTANTPNRVKIGFSFALAILVYTLDLGITY--TYSGMLDYAA 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E +G + G + F+G +I +G+++ T + +++L + Sbjct: 72 IVLSEAAVGLLLGYAANASVQIIMFSGHIIDVDMGISMATIFDPTTKTQVGIMSNLYYYL 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L L V + + A+V +Y IPIGQ +++++ V+ + F+I R++ P Sbjct: 132 LSLLLIVSGLYRYLVSAIVDTYKVIPIGQAAFRPSLYTTIVDFIGDYFVIGFRIALPMFA 191 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++ N +G+L ++ PQ+ ++ + I +G + + ++ ++ ++ F Sbjct: 192 CMMLLNCILGVLARIAPQMNMFVMGMQLKIFVGIIVVTFTLVMLPSVSNYIFQE 245 >gi|229827382|ref|ZP_04453451.1| hypothetical protein GCWU000182_02770 [Abiotrophia defectiva ATCC 49176] gi|229788320|gb|EEP24434.1| hypothetical protein GCWU000182_02770 [Abiotrophia defectiva ATCC 49176] Length = 260 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 IV RV + + P + IP Q+++ F + FS +L L T + ++ Sbjct: 15 FLFIVTRVSAFVFTSPFFNFGSIPRQLKVAFTLIFSALLYLTLPYTE--VRYPGIIGFTF 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +VM E G + G + L FTG +I IG + T + + +L Sbjct: 73 MVMSEALAGGMLGYFTNIVMTILNFTGRLIDMEIGFAMVTMFDPVFKVDTSVSGNLYNYF 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + +FHH A V +Y IPIG+ + N + + L F+I +RL P Sbjct: 133 TILLLLIGNFHHYFLAAFVDAYKVIPIGRAMVNANTVNVIADFLGNYFLIAMRLMLPIYA 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ N +G++ K+ PQ+ ++ + + +G + L ++ Sbjct: 193 TMLLVNAVLGVMAKVAPQMNMFVVGIQLKLLVGLAVMVLMTSML 236 >gi|254477385|ref|ZP_05090771.1| flagellar biosynthetic protein FliR [Ruegeria sp. R11] gi|214031628|gb|EEB72463.1| flagellar biosynthetic protein FliR [Ruegeria sp. R11] Length = 259 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 115/234 (49%), Gaps = 5/234 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ RV + + +LP Y+P++V+L A+AF+ V+ P L + A Y+ Sbjct: 23 IVFLRVSAMVAMLPAFGEQYVPVRVKLAIALAFTFVVAPALPLFPAPDTPLQYAGYA--- 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E +G G+ IR++ +Q G++ + + +L +G + A + +++ I L Sbjct: 80 ASEAIIGLALGVGIRLFIHAIQTAGTIAAQST--SLAQVLGGIGAEAMPAIGAVLLISAL 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 ++ H + ++ SY P+G+ + V+ + F + L++PFL Sbjct: 138 ALAVMLGIHVRAAEFMIYSYMMFPMGEFPAAMGLSDWGVHRISRAFSLGFSLAAPFLIGA 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +++N+++G++N+ +PQ+ + F+ P + G L ++ +++ +S + + F Sbjct: 198 LIYNLTLGVINRAMPQLMVAFVGAPVVTFGGLAILMVASPMLLEIWSTALMSFF 251 >gi|320668513|gb|EFX35340.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str. LSU-61] Length = 261 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTFGISLMATLMPLIAPFCEHLFSEIF 248 >gi|326791524|ref|YP_004309345.1| flagellar biosynthetic protein FliR [Clostridium lentocellum DSM 5427] gi|326542288|gb|ADZ84147.1| flagellar biosynthetic protein FliR [Clostridium lentocellum DSM 5427] Length = 261 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 100/227 (44%), Gaps = 1/227 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L +I CR+ + ++ LP + S IP + +I + + D + Y+ Sbjct: 14 LLIIFCRIIAAVLFLPIIEESRIPKLATSGLCLCLAITVF-MVTDLGQIYYEPTLISYTI 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E +G + G ++++Y QF GS+ ST GL + ++ + L + Sbjct: 73 LLLKETLVGLIIGFVLKIYFQIYQFIGSLWSTQGGLGMSMALDPVGGVQTPVLGRFYNLC 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + +H L+ ++ IPI + + ++ + ++ + +I L+ P L Sbjct: 133 LCAIFVLSGGYHWFIKTLIDTFTLIPINKGVFGTHLVTGIIDTVGNYLLISFELAMPVLG 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 I+ + +G+L + VPQ+ ++ I P + + L +++ ++ Sbjct: 193 LLILIDFGLGILARTVPQMNMFVIGIPLKVIVLFALLIVTVGLVPRF 239 >gi|222824090|ref|YP_002575664.1| flagellar biosynthesis protein FliR [Campylobacter lari RM2100] gi|222539312|gb|ACM64413.1| flagellar biosynthesis protein FliR [Campylobacter lari RM2100] Length = 256 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ L+ R+ I+ P S + IP+ V+ A+ ++ L P L+N ++ Sbjct: 12 VVIFMLLFARMSGLIVFFPFFSHNSIPLVVKTTLALFLTMFLYPLA----KLENNTPDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G V GL++++ LQ G IS +G ++ + + + ++ ++ Sbjct: 68 FILYLLSEVLFGMVAGLILQMIFAILQMAGEQISFTMGFSMASILDPATGANTPVISQVL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ LL D HH + + S I +G N+ + F++ ++ P Sbjct: 128 NLLALLVFLAFDGHHLILLFISNSLEYISLGGFYPHENLMLYLNKAMVNIFVLGFSMAFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ G+L K +PQ + + P I L L + I++ F + L F Sbjct: 188 ILAISLLSDVIFGMLMKTMPQFNLLVVGYPIKIFLSFAVLIAILLIMMQYFKNLMLKSF 246 >gi|307131601|ref|YP_003883617.1| flagellar biosynthesis protein fliR [Dickeya dadantii 3937] gi|306529130|gb|ADM99060.1| Flagellar biosynthesis protein fliR [Dickeya dadantii 3937] Length = 260 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 103/241 (42%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 F + R+ + I P S I +V++ + +IV+ P + + F Sbjct: 11 GWFNQFFWPLVRILALISTAPIFSERSITRRVKIGLGVLITIVITPSI-PHTSIPVFSAA 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ ++ +G + G +++ ++ G +I +GL+ T S + Sbjct: 70 GIW--MLFQQVLIGVMLGFAMQLAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVIAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ LL ++ H + LV S+ TIPI E GN+F + F L L+ Sbjct: 128 LMNLLALLLFLSMNGHLWLISLLVDSFHTIPISAEPISGNVFMTLAEAGGRIFSNGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++GLL++L PQ+ I+ I P + G + + I ++ F Sbjct: 188 LPLITLLLTINMALGLLSRLAPQLTIFAIGFPITLFAGIITVGFLIFLLSPYAEKLFGET 247 Query: 247 F 247 + Sbjct: 248 Y 248 >gi|304412526|ref|ZP_07394132.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183] gi|307307185|ref|ZP_07586923.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175] gi|304349168|gb|EFM13580.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183] gi|306910424|gb|EFN40855.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175] Length = 259 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 111/246 (45%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 + +++ SL+ CR+ M++P L SY+P VR+ A++ + ++ P L + Sbjct: 6 STELSMLIGSLWWPFCRIMGAFMIIPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVD 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + + L + +L +G + L + + + G+++S +GL + ++ Sbjct: 66 ALSLGSLF--LAVEQLLIGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTN 123 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L+ + I G L +D H +V S+ PIG + F ++ + F Sbjct: 124 PILSEWLQIFGTLIFLALDGHLVGLNIIVDSFRLWPIGNGI-FDLPLMGLISRMGWLFAA 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + ++ NI+ G+L++ P + I+ + P + +G + + LS+ I ++S Sbjct: 183 SLMLAIPAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRYSD 242 Query: 242 SFLYGF 247 L Sbjct: 243 LCLDAL 248 >gi|320182733|gb|EFW57617.1| Flagellar biosynthesis protein FliR [Shigella boydii ATCC 9905] Length = 261 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + ++ H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMSLVAPFCEHLFSEMF 248 >gi|308187302|ref|YP_003931433.1| Flagellar biosynthetic protein fliR [Pantoea vagans C9-1] gi|308057812|gb|ADO09984.1| Flagellar biosynthetic protein fliR [Pantoea vagans C9-1] Length = 261 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + P L+ + +V++ A+ + +L+P L + + Sbjct: 12 WVSQFFWPLVRIMALFATAPILNERSVSKRVKIGLAVMITWLLMPLLPA---VNVTLFSP 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G G ++ ++ G VI +G++ T L L Sbjct: 69 AGFWLLIQQMLIGIALGFTMQFAFAAVRLAGEVIGLQMGISFATFFDPGSRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + L S+ T+PIG N F + V F+ + L+ Sbjct: 129 LDMLAMLLFLTFNGHLWLISLLADSFHTLPIGGHPLNANAFMALVKSGGLIFLNGMMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ N+ +GLLN++ PQ+ I+ I P + +G L + L + ++ H F F Sbjct: 189 PLIVLLLMVNLVLGLLNRVSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFSEIF 248 >gi|124265770|ref|YP_001019774.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] gi|124258545|gb|ABM93539.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] Length = 256 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 103/244 (42%), Gaps = 5/244 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + RV + + P LSM +P++V++ A +I L + ++ Sbjct: 11 AWLSPMVWPFLRVLALFISAPVLSMRSVPVRVKVALAFFITIAAQASLPPMPVIA--LDS 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + V+ +L +G G R+ G++F G +I +GLN + T ++ Sbjct: 69 AQAFEAVIQQLVIGLALGFSARIVMAGIEFAGEMIGLQMGLNFAAFFDPISASQSTAVSR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN---MLQTTFMIML 183 G V++ H + A+++S+ P+ F S + F + L Sbjct: 129 FFGTSAAWLFVVMNGHLLLTAAVIQSFHAFPVATPEAAPLAFLSALQPQLWGAEVFRLGL 188 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ P + + N+ +GL++++ QI I+ I P +G+G + + L++ + F+ + Sbjct: 189 WIALPIITMLLFMNLVLGLISRVASQINIFAIGFPITLGVGLVGITLTLPFMEQPFTMAL 248 Query: 244 LYGF 247 Sbjct: 249 ERML 252 >gi|157165085|ref|YP_001467383.1| flagellar biosynthesis protein FliR [Campylobacter concisus 13826] gi|112801903|gb|EAT99247.1| flagellar biosynthetic protein FliR [Campylobacter concisus 13826] Length = 253 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 5/233 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ I+ P S + IP+ V+ +VL P + NF Sbjct: 15 FMLLFARLSGLIVFFPFYSHNQIPLSVKTLLVFVLCVVLFPLSKAHENSINF-----LVG 69 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E+ LG GL++ + LQ G IS +G ++ + + + +LI I Sbjct: 70 EILGEVMLGLSAGLMLTIIFATLQMAGEQISMVMGFSMASVLDPQTGTNSPVIANLINFI 129 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL D HH + S +P+G I S +N+ FM +S P + Sbjct: 130 ALLTFLAFDGHHLLLQFYASSLAVVPLGDFYPRPGIMSYAINLFTNLFMFGFIMSFPIIA 189 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + G+L K +PQ + I P + +G L + I+ S L Sbjct: 190 LSLLSDSIFGMLMKTMPQFNLLVIGYPIKVTIGFSVLIAILAGIMKIMSDLLL 242 >gi|304398867|ref|ZP_07380737.1| flagellar biosynthetic protein FliR [Pantoea sp. aB] gi|304353571|gb|EFM17948.1| flagellar biosynthetic protein FliR [Pantoea sp. aB] Length = 261 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + P L+ I +V++ A+ + +++P L + + Sbjct: 12 WVSQFFWPLVRIMALFATAPILNERSISKRVKIGLAVMITWLVMPLLPA---VNVTLFSP 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G G ++ ++ G VI +G++ T L L Sbjct: 69 PGFLLLIQQMLIGIALGFTMQFAFAAVRLAGEVIGLQMGISFATFFDPGSRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV S+ T+PIG E N F + V F+ + L+ Sbjct: 129 LDMLAMLLFLSFNGHLWLISLLVDSFHTLPIGGEPINANAFMALVKSGGLIFLNGMMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ N+ +GLLN++ PQ+ I+ I P + +G L + L + ++ F F Sbjct: 189 PLIVLLLMVNLVLGLLNRVSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCERLFGEIF 248 >gi|167037651|ref|YP_001665229.1| flagellar biosynthesis protein FliR [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116066|ref|YP_004186225.1| flagellar biosynthetic protein FliR [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856485|gb|ABY94893.1| flagellar biosynthetic protein FliR [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929157|gb|ADV79842.1| flagellar biosynthetic protein FliR [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 260 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+ +L P +P ++ ++++ + N Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPV--DLQINNVLD 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y +V+ E +G V GL + + G +I +G L + I + + I Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L +++ H+ +F L KS IPIG+ + + M+ F++ R+S+ Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGMSQVLTKMVSDMFILGFRISA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMF 244 >gi|329298605|ref|ZP_08255941.1| flagellar biosynthesis protein FliR [Plautia stali symbiont] Length = 262 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 109/240 (45%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + P L+ IP +V++ A+ + +L+P L ++ + Sbjct: 12 WVAQFFWPMVRLLALFASAPLLNERSIPKRVKIGLAVVTTWILMPLL---PPVEVTLFTP 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +++ +L +G GL +++ ++ G +I +GL+ T + + + L Sbjct: 69 AGFWMLVQQLLIGVGIGLTMQLAFSAMRLVGEMIGLQMGLSFATLLDPNSRINMPLLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + LV S+ T+PI + N F + F+ + L+ Sbjct: 129 LDMLAMLLFLTFNGHLWLISLLVDSFHTLPINDQPLNANAFMALTKAASLIFLNGMMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ ++ I P + +G L L + + ++ H F F Sbjct: 189 PLIILLLTLNLALGLLNRVSPQLSVFAIGFPITLTVGILSLGMMMPLLAPFCEHLFGEVF 248 >gi|171057715|ref|YP_001790064.1| flagellar biosynthetic protein FliR [Leptothrix cholodnii SP-6] gi|170775160|gb|ACB33299.1| flagellar biosynthetic protein FliR [Leptothrix cholodnii SP-6] Length = 253 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 88/228 (38%), Gaps = 2/228 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L R + P LSM +P+++++ A+ ++ L L A Sbjct: 12 WLTPLLWPFLRTLALFSAAPVLSMRIVPVRLKVGLALLVAVSAQASLPPMPSLPLDSPGA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ +G G RV ++F G +I +GLN + T Sbjct: 72 LMMGA--QQVVIGVTLGFSARVVFAAVEFAGELIGLQMGLNFAGFFDPATGSQGTATARF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 IG L V++ H + A+V S+ P+ + F + L ++ Sbjct: 130 FSTIGSLLFVVMNGHLLLVMAVVHSFNAFPVSDQPLSVITTLQPQVWGAEIFRLGLWIAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + N+ +G+++++ QI I+ + + +G + L++ ++ Sbjct: 190 PIIAMLLFVNLVLGVISRVAQQIQIFSVGFGITVSVGLFGVLLTLPML 237 >gi|260431742|ref|ZP_05785713.1| flagellar biosynthetic protein FliR [Silicibacter lacuscaerulensis ITI-1157] gi|260415570|gb|EEX08829.1| flagellar biosynthetic protein FliR [Silicibacter lacuscaerulensis ITI-1157] Length = 257 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 114/233 (48%), Gaps = 5/233 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F++ RV + + LLP +P +V+L A+AFS+V+ P + A ++ Sbjct: 20 FVVFLRVSAVVSLLPAFGERSVPTRVKLGVAVAFSLVVAPAVQIEPLAPGM---AAMVRV 76 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E +G + G+ +R++ L LQ GSV + + L+ +G + + + L+ + G Sbjct: 77 ITAETLIGLILGVGLRLFVLALQTAGSVAAQSTSLS--QILGGAAADPLPAMGYLLTLAG 134 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L +++ H + LV SY P G ++ V + +F + L++PF+ Sbjct: 135 LALAVLLNLHVRAAQFLVHSYMLFPAGIVPAASDVSQWGVAQIAHSFSLAFGLAAPFVIA 194 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 +++N+++G++N+ +PQ+ + FI P + G L II+ +S + L Sbjct: 195 SLIYNLALGVINRAMPQLMVAFIGAPAITFAGLFLLFAGTPIILSVWSDALLS 247 >gi|327399033|ref|YP_004339902.1| type III secretion system inner membrane R protein [Hippea maritima DSM 10411] gi|327181662|gb|AEA33843.1| type III secretion system inner membrane R protein [Hippea maritima DSM 10411] Length = 262 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 106/239 (44%), Gaps = 1/239 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ I+ RV S I+ P S + IP QV++ F+ F+++L P + I +++ +N Y Sbjct: 15 FLAFLFILLRVSSIIVFAPIFSSASIPPQVKVAFSFVFAVILYPTVRSYIHIES-INTLY 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + EL + L I GL+ ++ +G ++ + +++ + L Sbjct: 74 IVSITLRELMFAVLLSLTIHFIWSGLELGAQLVGFNMGFSIANVISPEENIQISVLAEFE 133 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I +L +I+ H+ A+ S+ + +G NIF F + F + + +P Sbjct: 134 SIFAILVFLIINGHYVFIQAMTYSFEVLKVGGFSLNQNIFHIFNKLTAVLFDVSFTVLAP 193 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + + G++ + +PQ+ I ++ P I +G + L S + H + F Sbjct: 194 VIIALFITQVVFGVIARTMPQMNIMIVAFPLSIAIGFITLGASFVFVAESLIHYYHQAF 252 >gi|262276383|ref|ZP_06054192.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886] gi|262220191|gb|EEY71507.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886] Length = 237 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 89/219 (40%), Gaps = 2/219 (0%) Query: 28 GLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLI 87 ++P++VRL ++A + ++P L + V+ + L ++ +G G + Sbjct: 3 FFGARFVPVRVRLYLSLAITFAVMPALPRVPETVELVSFGGFVIL-AQQILIGIAMGTVT 61 Query: 88 RVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFY 147 + G +I L + + ++ L + + D H Q+ Sbjct: 62 QFVIQTFVLLGQIIGMQSSLGFASMVDPANGQNTPLLGQFYLFVATMIFLSTDGHLQMLN 121 Query: 148 ALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 +V S+ T+P+G L + + + + F + L ++ + + N+S G++ + Sbjct: 122 LVVMSFKTLPVGDMLGAAD-YRAMASWFGIMFSVALGMALAGIIALLTVNLSFGVMTRAA 180 Query: 208 PQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 PQ+ I+ + + + +G L + I+ + + + G Sbjct: 181 PQLNIFSLGFSFALLVGLLICMYLLNGILPHYLNHWDTG 219 >gi|223038929|ref|ZP_03609221.1| flagellar biosynthetic protein FliR [Campylobacter rectus RM3267] gi|222879902|gb|EEF14991.1| flagellar biosynthetic protein FliR [Campylobacter rectus RM3267] Length = 253 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 5/234 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L+ R+G ++ P + IPM V+ F+ ++ L P Y Sbjct: 12 VITFMLLFARIGGLMLFFPFYAHEQIPMSVKTAFSFLLTLFLFPLASIK-----SGEVYY 66 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E LG GLL+ + LQ G IS +G ++ + + L+ ++++I Sbjct: 67 LAVEIVSEAALGVCAGLLLHIVFASLQLAGEQISMIMGFSMASVLDPQTGLSSPVISNII 126 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L+ D HH + + S +P+G +I + F +S P Sbjct: 127 NFLALMTFLAFDGHHLILLFISNSLTHVPLGGFYPSPDIVQYASKSMINLFTFGFIISFP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 L ++ ++ G+L K +PQ + + P I +G L + ++ F Sbjct: 187 ILALSLLSDLIFGMLMKTMPQFNLLVVGYPIKITIGFAVLIAILAGMMELFKQL 240 >gi|188581881|ref|YP_001925326.1| flagellar biosynthetic protein FliR [Methylobacterium populi BJ001] gi|179345379|gb|ACB80791.1| flagellar biosynthetic protein FliR [Methylobacterium populi BJ001] Length = 258 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 120/238 (50%), Gaps = 1/238 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFVN 65 + + L RVG+ +ML+PGL I ++RL A+ ++VLLP + + + Sbjct: 11 GLAAAFLLTFARVGTLMMLMPGLGEQLIAARLRLALALLMTLVLLPTVRPLLPTGSGALA 70 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L+ E+ +G + GL +R+ LQ G+VIS +GL+ ++ + + + Sbjct: 71 APSVIGLLFGEILIGLMLGLCVRMILAALQTAGTVISQQLGLSYAMTVDPTMGGQQAAIG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + ++G+ + D HH A+ +SY +P + ++ F + +R+ Sbjct: 131 NFLALLGVTLILATDLHHVALEAIGRSYVLLPPSGVPAMADAAKLALDAFSRGFALAVRI 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + ++ +I+ F Sbjct: 191 SGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVLIGMMLFVGALGLIMGLFLDDL 248 >gi|78047542|ref|YP_363717.1| flagellar biosynthesis pathway component FliR [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925987|ref|ZP_08187353.1| flagellar biosynthetic protein FliR [Xanthomonas perforans 91-118] gi|78035972|emb|CAJ23663.1| flagellar biosynthesis pathway component FliR [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543583|gb|EGD15000.1| flagellar biosynthetic protein FliR [Xanthomonas perforans 91-118] Length = 263 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A ++VL P L + F +A S Sbjct: 20 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + + Sbjct: 80 --IARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYL 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L F+ + L L+ P Sbjct: 138 GFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPM 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F F Sbjct: 198 MVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 255 >gi|254561747|ref|YP_003068842.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens DM4] gi|254269025|emb|CAX24986.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens DM4] Length = 258 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 121/238 (50%), Gaps = 1/238 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RVG+ +ML+PGL I ++RL A+ ++VL P + + N Sbjct: 11 GLAAAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPTGNAALA 70 Query: 67 AY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ + + + Sbjct: 71 APSLIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGGQQAAIG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + ++G+ + D HH A+ +SY +P + + +F + +R+ Sbjct: 131 NFLAMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLALAAFSRSFALAVRI 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F Sbjct: 191 SGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLFLDDL 248 >gi|260855925|ref|YP_003229816.1| flagellar export pore protein FliR [Escherichia coli O26:H11 str. 11368] gi|257754574|dbj|BAI26076.1| flagellar export pore protein FliR [Escherichia coli O26:H11 str. 11368] gi|323152719|gb|EFZ38991.1| flagellar biosynthetic protein FliR [Escherichia coli EPECa14] Length = 261 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + L ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLALLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P ++ +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLILTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|149908445|ref|ZP_01897108.1| flagellar biosynthesis protein [Moritella sp. PE36] gi|149808608|gb|EDM68543.1| flagellar biosynthesis protein [Moritella sp. PE36] Length = 261 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 92/239 (38%), Gaps = 2/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M S R+ +M++ P +RL + A ++++ P L ++ F + Sbjct: 11 FMASYIWPFARLSGMVMVMIVSGAKTTPTIIRLFYCFALTVMVAPVLPPMPNVDLFSLSS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +++ + +G G + + G +I+ L + + + + Sbjct: 71 FM--IILQQSLIGIAIGFVTVMLIQTFVLAGQIIAMQTSLGFASMADPASGQMSPVIGQI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++G L ++ H + +VKS+ T+P+ + + F L +S Sbjct: 129 YILLGTLVYLSVNGHLFMIETVVKSFETLPVSASGLVAIQYYEIAGWMSVMFAAALSMSL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + +V N S G++ K PQ+ ++ + + G + LS++ V+ F + Sbjct: 189 SAVVAMLVINFSFGVMTKAAPQLNVFSLGFAVGMVAGLFIIYLSLKSFVFHFDAQWQRA 247 >gi|269967108|ref|ZP_06181175.1| flagellar biosynthetic protein FliR [Vibrio alginolyticus 40B] gi|269828245|gb|EEZ82512.1| flagellar biosynthetic protein FliR [Vibrio alginolyticus 40B] Length = 254 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 3/225 (1%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 RVG+ + +P + IP+ VR A++ ++ P + ++ F + + L Sbjct: 15 FFRVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSMTSLF--LAFE 72 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 + G + GL++ + G VIS +GL + + L+ L + I L Sbjct: 73 QAIWGVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILGRIFLIFSTLL 132 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 ++ H V +++S+ P+G + VN+ F L L+ P + ++ Sbjct: 133 FLALEGHLLVIDIVIQSFVVWPVGSGI-TSLSLQGVVNIFGWMFASSLALALPAIVSMLL 191 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 192 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYT 236 >gi|58582236|ref|YP_201252.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426830|gb|AAW75867.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 263 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A ++VL P L + F +A S Sbjct: 20 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + I Sbjct: 80 --IARELAIGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYI 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L F+ + L L+ P Sbjct: 138 GFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPM 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L+K P + + P + LG L F F Sbjct: 198 MVAMLAVNLAFGALSKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 255 >gi|32471371|ref|NP_864364.1| flagellar biosynthetic protein fliR [Rhodopirellula baltica SH 1] gi|32443212|emb|CAD72043.1| probable flagellar biosynthetic protein fliR [Rhodopirellula baltica SH 1] Length = 264 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 104/233 (44%), Gaps = 4/233 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYS 70 L++ R+G +M +P + +P ++R A+ + +L+P L D + N + Sbjct: 17 LVLTRLGMLLMAMPAIG-VGVPKRIRALLALVLTAILMPTLAAQCDHPSMPTIDNLPELA 75 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E +G + G ++ GLQ G I++ G+ L S+ + S + L ++G+ Sbjct: 76 VAIGREALIGMLIGATTQMVITGLQLAGEAITSTGGMQLGDSIDPTTSSSMPALARMVGM 135 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + + H V LV+S+ IP G ++ + + ++ + +R++ P + Sbjct: 136 LVTTVMLITGAHRVVLRLLVESFQHIPPGNVQFTDSMMDAVIVVMGNSMASGVRVAGPVI 195 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ N+ GL+++ +PQI + I + L+I + + F Sbjct: 196 AALLLANLVTGLISRTLPQINVLAIGLSINALAMLVVTALTIGSVAWLFQEDL 248 >gi|260768791|ref|ZP_05877725.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] gi|260616821|gb|EEX42006.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] gi|315180494|gb|ADT87408.1| hypothetical flagellar biosynthetic protein FliR [Vibrio furnissii NCTC 11218] Length = 258 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 96/236 (40%), Gaps = 3/236 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L+ R ++ P S +P+ ++ A+ FS++ + + F +A Sbjct: 12 WLGILWWPFVRFSGFFLVAPVFGDSKVPLMTKVLLALCFSLLCAGMVTNVPSFNPFSLQA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + G + GL ++++ G +S +GL++ + + + Sbjct: 72 VLFGL--YQFSFGLIFGLAVQMFITIFTLAGQALSMQMGLSMAMMNDPNSGSSVAITGQI 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L +D H V V S+ P+ Q F +I +++ F L +S Sbjct: 130 FSLTAMLLFLSMDGHLIVLDVFVDSFTLWPMNQPYPFESI-KHLISLFSWMFSSALIISI 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ N++ G ++++ P + ++ + P + LG L +SI I F + Sbjct: 189 PAIITMLLSNVTFGFMSRIAPSLNVFVLGFPMTMFLGLFALLISIYGIGDIFFNLL 244 >gi|163852024|ref|YP_001640067.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens PA1] gi|240139291|ref|YP_002963766.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens AM1] gi|163663629|gb|ABY30996.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens PA1] gi|240009263|gb|ACS40489.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens AM1] Length = 258 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 122/238 (51%), Gaps = 1/238 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RVG+ +ML+PGL I ++RL A+ ++VL P + + N Sbjct: 11 GLAAAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPTGNAALA 70 Query: 67 AY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ + + + Sbjct: 71 APSLIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGGQQAAIG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + ++G+ + D HH A+ +SY +P + ++ +F + +R+ Sbjct: 131 NFLAMLGVTLILATDLHHVALEAIGRSYVLLPPSGVPAMADAAKLALDAFSRSFALAVRI 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F Sbjct: 191 SGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLFLDDL 248 >gi|119503677|ref|ZP_01625760.1| flagellar biosynthetic protein FliR [marine gamma proteobacterium HTCC2080] gi|119460739|gb|EAW41831.1| flagellar biosynthetic protein FliR [marine gamma proteobacterium HTCC2080] Length = 257 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 94/233 (40%), Gaps = 2/233 (0%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 RV + +++ P S S + ++ R+ A+ + + P + F + + Sbjct: 19 PFLRVSAMLLIAPVFSASGVSVRFRVLLAVLIAALAAPIIPTPPTTDLFSANGLL--MAI 76 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ +G G ++++ + + G +S +GL ++ + + L+ + I+ L Sbjct: 77 REVGIGFAIGFVLQLVFGAIVYAGQAVSMTMGLGFAMAVDPQNGVQVPVLSQMYVILATL 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 ++ H + ++ SY +P + + + F + L+ P + + Sbjct: 137 LFLSLNGHLILIATVIDSYQILPANLSGIPVSSLGAVAALGSKVFASGISLALPAMAAML 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N++ G++ + PQ+ I+ + P + G L +++ ++ S Sbjct: 197 MVNVTFGVITRTAPQLNIFAVGFPMTLMGGFFVLFINMPNLIAALSQFLDQAL 249 >gi|300311363|ref|YP_003775455.1| flagellar biosynthesis protein FliR [Herbaspirillum seropedicae SmR1] gi|300074148|gb|ADJ63547.1| FliR component of the flagellar biosynthesis pathway [Herbaspirillum seropedicae SmR1] Length = 267 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 92/240 (38%), Gaps = 2/240 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + R+ + + P + +PM V++ +A V+ P + ++ Sbjct: 11 VWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPIPPAIEPTSMT 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + + G +R+ ++ G ST +GL+ ++ Sbjct: 71 GIMILLQQLLIG--LSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQGRTAVISQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ + ++ H + + +S+ T+PI + F V F + L+LS Sbjct: 129 VFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKIFSMGLQLS 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P L ++ N ++G+L + PQ+ ++ I + G + + +++ ++ G Sbjct: 189 LPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTPVQKLLSDG 248 >gi|327537627|gb|EGF24339.1| flagellar biosynthetic protein fliR [Rhodopirellula baltica WH47] Length = 264 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 104/233 (44%), Gaps = 4/233 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYS 70 L++ R+G +M +P + +P ++R A+ + +L+P L D + N + Sbjct: 17 LVLTRLGMLLMAMPAIG-VGVPKRIRALLALVLTAILMPTLAAQCDHPSMPTIDNLPELA 75 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + E +G + G ++ GLQ G I++ G+ L S+ + S + L ++G+ Sbjct: 76 VAIGREALIGMLIGATTQMVITGLQLAGEAITSTGGMQLGDSIDPTTSSSMPALARMVGM 135 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + + H V LV+S+ IP G ++ + + ++ + +R++ P + Sbjct: 136 LVTTVMLITGAHRVVLRLLVESFQHIPPGNVQFTDSMMDAVIVVMGNSMASGVRVAGPVI 195 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ N+ GL+++ +PQI + I + L+I + + F Sbjct: 196 AALLLANLVTGLISRTLPQINVLAIGLSINALAMLVVTALTIGSVAWLFQEDL 248 >gi|148553142|ref|YP_001260724.1| flagellar biosynthetic protein FliR [Sphingomonas wittichii RW1] gi|148498332|gb|ABQ66586.1| flagellar biosynthetic protein FliR [Sphingomonas wittichii RW1] Length = 260 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + + R G+ + P +PMQ+R A+A I L + + V Sbjct: 10 ETQLWLWMIAMIRPGAAFIAAPVFGAPQVPMQLRAVVALAIGIPALANTPFVMPVGGIVT 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + LV E+ G G +++ G VI A+GL M + ++ Sbjct: 70 IEGFL-LVAGEILAGLALGFAVQIGFSAALVAGEVIGNAMGLGFAGMMDPATGSPSPAVS 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ H Q+ +V+SY +P G+ F L + Sbjct: 129 QYLSLLATFLFLATGGHLQLAAIIVESYRALPPGEAWLGARSIQGLALFGGDLFAAGLAI 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F I+ + + +L + PQ+ I+ + P + G + L ++ ++ + + Sbjct: 189 ALPVGFALILVQLVMAMLARSAPQMNIFSVGLPATLMAGLVLLAIAAPVMADGITAAIQR 248 Query: 246 GF 247 G Sbjct: 249 GL 250 >gi|288573011|ref|ZP_06391368.1| type III secretion system inner membrane R protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568752|gb|EFC90309.1| type III secretion system inner membrane R protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 260 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 93/231 (40%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R I P S P+ + F+++ +P L + F + Sbjct: 14 YMLVSIRFLGIIFTAPVFLASSFPIPCLYFLSFFFALITVPQLGGGLPEVLFSGVLPFLL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + EL +G L LQ G +I T +GL + + + ++ + L +I Sbjct: 74 AALRELLVGASIAFLASAPFYALQIAGRMIGTRMGLAMVSVLDPISQSQDSIIGQLQILI 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 GL + H + AL++S+ +P+G+ + L F++ + + PF Sbjct: 134 GLWFFLYWNGHILLVRALMESFRLLPLGEMGLAVSSDLGLAEWLGKLFVMAFKFAIPFYG 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ +I +G L + VPQ+ ++ + P IGLG L + + + V Sbjct: 194 ALLLADIGLGFLARTVPQMNVFILGLPLKIGLGLFLLMVVLPMTVDIMHDQ 244 >gi|209545553|ref|YP_002277782.1| putative flagellar biosynthetic protein FliR [Gluconacetobacter diazotrophicus PAl 5] gi|209533230|gb|ACI53167.1| putative flagellar biosynthetic protein FliR [Gluconacetobacter diazotrophicus PAl 5] Length = 253 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 105/233 (45%), Gaps = 3/233 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT---IDLQNFVNRAY 68 +++CRV + +M PGL + PM+VR A++ ++ +LP + D + + Sbjct: 2 FLVVLCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRLVEVSGTALRMPSV 61 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 +V+ EL G G L R+ T+ + V++ GL + T ++ + Sbjct: 62 AIAVVVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGLASVLQPDSELGASSTAISHMA 121 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + + A+ SY P G G++ S TF + L+L++P Sbjct: 122 SMLIPVIFLSTGLYALPLAAITGSYSLFPPGHMPMVGDMARSVTEATSQTFALALQLAAP 181 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 F+ ++ +G+LN+L+P I +Y I+ P + G + L + I+++ + Sbjct: 182 FVLIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLIQVMTGVWQE 234 >gi|307264885|ref|ZP_07546447.1| flagellar biosynthetic protein FliR [Thermoanaerobacter wiegelii Rt8.B1] gi|306920143|gb|EFN50355.1| flagellar biosynthetic protein FliR [Thermoanaerobacter wiegelii Rt8.B1] Length = 260 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+ +L P +P ++ ++++ + N Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPVN--LQINNVLD 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y +V+ E +G V GL + + G +I +G L + I + + I Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L +++ H+ +F L KS IPIG+ + I M+ F++ R+S+ Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGISQVLAKMVSDMFILGFRISA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMF 244 >gi|325920562|ref|ZP_08182484.1| flagellar biosynthetic protein FliR [Xanthomonas gardneri ATCC 19865] gi|325548955|gb|EGD19887.1| flagellar biosynthetic protein FliR [Xanthomonas gardneri ATCC 19865] Length = 263 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 88/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A S+VL P L + F +A S Sbjct: 20 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLSMVLAPLLPPVPEWDGFTAQAVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 V EL +G G ++++ G ++S + GL+ + + I Sbjct: 80 --VARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPLRGVTSGVIAQWFYI 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG + F+ + L L+ P Sbjct: 138 GFGLLFFAANGHLAVISLLVDSYKALPIGTAVPDAAAFAEVAPTLFLQILRGGLTLALPM 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F F Sbjct: 198 MVAMLAVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 255 >gi|294668047|ref|ZP_06733172.1| flagellar biosynthesis pathway component FliR [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601886|gb|EFF45708.1| flagellar biosynthesis pathway component FliR [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 263 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A ++VL P L + F +A S Sbjct: 20 AIMWTMLRTGALLTAMPLIGTRTVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + + Sbjct: 80 --IARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYL 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L F+ + L L+ P Sbjct: 138 GFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLALALPM 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F F Sbjct: 198 MVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 255 >gi|303326360|ref|ZP_07356803.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. 3_1_syn3] gi|302864276|gb|EFL87207.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. 3_1_syn3] Length = 263 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 102/235 (43%), Gaps = 1/235 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +SL L + RV + +LP S + IP+ V+ + FS+ + P L + + + Sbjct: 9 AAALSLLLTMMRVSIVMFMLPVFSTNNIPIPVKAAVTIVFSLGVWPHLALSGAIMP-AHP 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +++ E+ LG V G+ + +G+Q G ++ +G + Sbjct: 68 FDMVLMLLGEVVLGLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGNQTGATAF 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ LLA +D H + S+ +P G N+ +++ F++ L+++ Sbjct: 128 FLWMVSLLAFLALDGHLYMIKGFAASFALVPPGGLFIGENLLWQVLDLAAQVFVLALKIA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +P + + +++ L+ + PQI I P IG+G F+ L + ++ H Sbjct: 188 APVMVALFMVEVALALVARTSPQIHIMEFGFPIKIGVGFFFVGLLLVVMADHVEH 242 >gi|289666113|ref|ZP_06487694.1| flagellar biosynthetic protein FliR [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 263 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A ++VL P L + F ++ S Sbjct: 20 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQSVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + I Sbjct: 80 --IARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYI 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L F+ + L L+ P Sbjct: 138 GFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPM 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F F Sbjct: 198 MVAMLAVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 255 >gi|259417172|ref|ZP_05741091.1| flagellar biosynthetic protein FliR [Silicibacter sp. TrichCH4B] gi|259346078|gb|EEW57892.1| flagellar biosynthetic protein FliR [Silicibacter sp. TrichCH4B] Length = 259 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 114/234 (48%), Gaps = 5/234 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ R+G+ ++ G IP Q+RL + F+ ++ P L + + Y+ L+ Sbjct: 23 IVFLRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPALPQMPIPETVMQ---YAGLI 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ +G GL +R++ LQ GS+ + L+ +G + + L +++ I G+ Sbjct: 80 ATEVVVGLSLGLGLRMFMHMLQTAGSIAAQCTSLS--QVLGGAGADPMPALGAVLWISGI 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 ++DFH +++SY P+G+ + + V+ + TF L++PFL Sbjct: 138 AVAVMLDFHIHAAQLMIRSYDLFPVGRFPDAAGLSEWGVHRVSATFAQAFTLAAPFLITA 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +++N+++G++N+ + Q+ + F+ P + G L + +++ + + L F Sbjct: 198 VIYNLTLGVINRAMTQLMVVFVGAPVITFGGLSILMIGAPMMLEVWGRNLLMFF 251 >gi|237751819|ref|ZP_04582299.1| flagellar biosynthetic protein FliR [Helicobacter bilis ATCC 43879] gi|229373185|gb|EEO23576.1| flagellar biosynthetic protein FliR [Helicobacter bilis ATCC 43879] Length = 258 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 103/238 (43%), Gaps = 3/238 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +M+ +++ R G + P +P+ VR A ++V +P + I + Sbjct: 13 VMAFLMLLLRFGGILAFFPFFDNQILPVSVRAALAFVLAVVFMPMVTHIISYPSLTA--- 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + E+ LG GL++++ + F G + S ++GL + ++ + ++ ++ Sbjct: 70 FMIGGLFEILLGFTCGLVLQIIFSSIVFAGDLASFSMGLTMASAYDPMSGTTKPIVSQVV 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L +FH+ + + ++ P+G + NI + F +I ++ P Sbjct: 130 VFLSILMALHFNFHYLLLDIIARTLNDTPLGGFMLSDNIVAYFTKSFANMILIGFSMAFP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + ++ +I G++ K PQ + I P IG+ + L + + I+ F + G Sbjct: 190 IIAVLLLTDIIFGMIMKTHPQFNLLVIGFPVKIGVALVILAIIVPSIMQHFRYDLSEG 247 >gi|308050044|ref|YP_003913610.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799] gi|307632234|gb|ADN76536.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799] Length = 259 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 102/236 (43%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 ++ R+ L+P S ++P++V++ A + ++ P L + A Sbjct: 16 IWWPFFRIAGAFALMPFFSNGHVPVRVKVLLAFFLATLVGPVLPTPPPVDPLSAHALL-- 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + +L +G + GL++ + L G ++S +GL + ++ + L + + Sbjct: 74 IAFEQLAVGAMMGLILSMLLHILSMLGQMLSMQMGLAMSVMNDPANGVNHALLGQWMVMY 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G L +D H +V+S+ PIG + + + TF + L L+ P + Sbjct: 134 GTLLFLALDGHLVALGIVVESFTLWPIGSGVQELPLMMLIMK-FGWTFAMALMLAIPAVM 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ NI+ G+LNK P + +Y + P + LG + + +S + +++ L Sbjct: 193 AMLMVNITFGVLNKSAPTLNVYSLGFPLAMMLGLVSILISFSGLPGRYTDLCLDAL 248 >gi|302387777|ref|YP_003823599.1| flagellar biosynthetic protein FliR [Clostridium saccharolyticum WM1] gi|302198405|gb|ADL05976.1| flagellar biosynthetic protein FliR [Clostridium saccharolyticum WM1] Length = 253 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 103/227 (45%), Gaps = 2/227 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 MM LI R+ I+L P L P V+ M F++++ F + VN Sbjct: 7 MMLFSLIFMRMSGFILLNPILGRRNTPNVVKGGMIMVFTLLVYSFSAAQVP--EPVNSIE 64 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ L++ E +G G ++ ++ + + F G +I +GL++ T + SL Sbjct: 65 FAVLMIKEFIMGYTIGFVMDLFLMVITFAGHIIDFQMGLSMATIYDPQSNTQIAITGSLW 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +L + +D H + L+KS T+P GQ + + + + + ++ ++ S P Sbjct: 125 NAYFMLLFFAVDGHLALIKLLIKSAETVPYGQVVIGTKVAWAMIEVFIQCIIMAIKFSLP 184 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + + I++G+L K++PQI ++ ++ + +G L L + Sbjct: 185 IVAIEFITEIAVGILMKMIPQINVFVVNIQAKLVIGLLMLIFLFSPM 231 >gi|260222418|emb|CBA31962.1| Flagellar biosynthetic protein fliR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 255 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 97/233 (41%), Gaps = 2/233 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + RV + P LS PM+ ++ ++ ++ + L D + N Sbjct: 12 WLSPIIWPFLRVLAVFTSAPVLSSRAFPMRAKIGLSLLVALAIQASLPDAPVIS--FNDP 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V+ ++ +G G +R+ ++ G V+ +GLN S + + + Sbjct: 70 AALAVVIQQVVIGLSIGFAVRLVFSSVELAGEVVGFQMGLNFAAFFDPSMNTQSSAVARF 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I L V++ H V A+ +S+ P+ + F L ++ Sbjct: 130 FAQIASLLFVVMNGHLMVMMAVTQSFVAFPVSPHFLDALAAMQLQKLGAEVFASALWIAL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + + N+++G+++++ PQ+ I+ I P + +G + + +++ ++ F+ Sbjct: 190 PMVGILLFTNMALGIISRVSPQMNIFAIGFPITLVVGIVGIAVTLPMLDQPFT 242 >gi|307293816|ref|ZP_07573660.1| flagellar biosynthetic protein FliR [Sphingobium chlorophenolicum L-1] gi|306879967|gb|EFN11184.1| flagellar biosynthetic protein FliR [Sphingobium chlorophenolicum L-1] Length = 260 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 93/242 (38%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E+ + + + R G+ + P +P+Q+RL ++A + L + + + Sbjct: 10 EVQLWIWLIAMIRPGAAFIAAPVFGAPAVPLQLRLILSLALGMAALNSVHIVLPADGVAS 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 LV E+ G G +++ G I +GLN + S A + Sbjct: 70 FQG-VMLVAGEVLAGLAIGFAVQIGYAAALVAGEAIGNTMGLNFAAMVDPSSGQATQAVG 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + I+ L +D H + +V+SY +P G + + + L + Sbjct: 129 QFLSILSTFLLLAMDGHLMLVSFVVQSYQALPPGGAMLGNDAIWHLIEFGGALLGAGLTI 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F ++ I +G+L + P + ++ + P + G + L ++ ++ + + Sbjct: 189 ALPVGFALVLVQIVMGMLARTAPALNLFSVGMPVALMAGLILLAVTAPVMGEGITAALKA 248 Query: 246 GF 247 G Sbjct: 249 GL 250 >gi|170769445|ref|ZP_02903898.1| flagellar biosynthetic protein FliR [Escherichia albertii TW07627] gi|170121769|gb|EDS90700.1| flagellar biosynthetic protein FliR [Escherichia albertii TW07627] Length = 243 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 3/231 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 RV + I P LS +P +V+L AM + + P + + Y L + + Sbjct: 1 MRVLALISTAPILSERSVPKRVKLGLAMMITFAITPAIPAN---DVPIFSFYALWLAVQQ 57 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G G ++ ++ G +I +GL+ T + L L ++ ++ LL Sbjct: 58 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMDMLALLLF 117 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 + H + LV ++ T+PIG E N F + F+ L+ P + + Sbjct: 118 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLAITKTGGLIFLNGFMLALPLITLLLTL 177 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 178 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 228 >gi|84624129|ref|YP_451501.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576797|ref|YP_001913726.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576989|ref|YP_001913918.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368069|dbj|BAE69227.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521249|gb|ACD59194.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521441|gb|ACD59386.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae PXO99A] Length = 257 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A ++VL P L + F +A S Sbjct: 14 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + I Sbjct: 74 --IARELAIGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYI 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L F+ + L L+ P Sbjct: 132 GFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPM 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L+K P + + P + LG L F F Sbjct: 192 MVAMLAVNLAFGALSKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 249 >gi|296135633|ref|YP_003642875.1| flagellar biosynthetic protein FliR [Thiomonas intermedia K12] gi|295795755|gb|ADG30545.1| flagellar biosynthetic protein FliR [Thiomonas intermedia K12] Length = 266 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 4/244 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + F RV + + L P SM +P VR+ A+ ++ + P L +Q Sbjct: 10 ETWIGAFFWPFLRVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPAMPPVQFGTA 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A+ L L +G GL + + + F GSVI +G+ T + T L Sbjct: 70 TAWMLLLQQ--LLVGGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQGVQVTSLA 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM--LQTTFMIML 183 S + ++ +L ++ H + + +S+ +P+ L + F + L Sbjct: 128 SFLNMVTMLLFLAVNGHLILLAVIARSFTLLPVAPNLGLAAQTWFTLAQQGGSAIFSLGL 187 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L++P + ++ N+ +G+L KL PQ+ ++ + P +G L L L + ++ H Sbjct: 188 ALAAPVIGVLLIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQNVVQHLV 247 Query: 244 LYGF 247 G Sbjct: 248 DVGL 251 >gi|294013057|ref|YP_003546517.1| flagellar biosynthetic protein FliR [Sphingobium japonicum UT26S] gi|292676387|dbj|BAI97905.1| flagellar biosynthetic protein FliR [Sphingobium japonicum UT26S] Length = 260 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 93/242 (38%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E+ + + + R G+ + P +P+Q+RL ++A + L + + + Sbjct: 10 EVQLWIWLIAMIRPGAAFIAAPVFGAPAVPLQLRLILSLALGMAALNSVHIVLPADGVAS 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 LV E+ G G +++ G I +GLN + S A + Sbjct: 70 FQG-VMLVAGEVLAGLAIGFAVQIGYAAALVAGEAIGNTMGLNFAAMVDPSSGQATQAVG 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + I+ L +D H + +V+SY +P G + + + + + Sbjct: 129 QFLSILSTFLLLAMDGHLMLVSFVVQSYQALPPGGAMLSNDAVWHLIEFGGALLGAGVTI 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F ++ I +G+L + P + ++ + P + G + L ++ I+ + + Sbjct: 189 ALPVGFALVLVQIVMGMLARTAPALNLFSVGMPVALMAGLILLAVTAPIMGEGITAALKA 248 Query: 246 GF 247 G Sbjct: 249 GL 250 >gi|17548594|ref|NP_521934.1| flagellar biosynthetic fliR transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430842|emb|CAD17524.1| probable flagellar biosynthetic flir transmembrane protein [Ralstonia solanacearum GMI1000] Length = 262 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 97/241 (40%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV + I + P + + IP +++ F + ++ L P L + Sbjct: 11 GWIALYWWPLVRVLAFIAVAPPFANTEIPTSIKVAFGVVLTVALAPMLPVPAGISVGSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G G+ +++ + G ++S IGL T + + + L Sbjct: 71 GLWITLL--QVAIGMALGVCVQMVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I + + A D H + +AL S+ +P+ G + + F + +R++ Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTVLPVSAAPLAGGGWQTLAGGGAAVFALAVRIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + +V N++ +L++ + + + + +G + + + + + S + Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMNA 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|197334958|ref|YP_002156666.1| flagellar biosynthetic protein FliR [Vibrio fischeri MJ11] gi|197316448|gb|ACH65895.1| flagellar biosynthetic protein FliR [Vibrio fischeri MJ11] Length = 260 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 92/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL ++ + ++P + V+ Sbjct: 11 FIATYFWPYTRISAMLMVMSVFGARFVSPRIRLYLGLSITFAVMPAIPAMPPEIQLVSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G++ T G ++ L + + ++ L L Sbjct: 71 GFMT-TAEQIIIGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L D H ++ +V S+ T+P+G + S + L L +S Sbjct: 130 FMFLSILFFLGTDGHLKMINFVVMSFTTLPVGVGKLTSVDYQSMASWLGIMMKAGLSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L I + + +L Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIILGLFNHYDLHWLRA 248 >gi|21231362|ref|NP_637279.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768585|ref|YP_243347.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991604|ref|YP_001903614.1| hypothetical protein xccb100_2210 [Xanthomonas campestris pv. campestris str. B100] gi|21113024|gb|AAM41203.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573917|gb|AAY49327.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733364|emb|CAP51565.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 263 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ ++ L P L + F A S Sbjct: 20 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLTGTLAMALAPILPPVPEWDGFNATAVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++R+ G ++S A GL+ + + I Sbjct: 80 --IARELAVGASMGFMLRLIFEAGALAGELVSQATGLSFAQMSDPLRGVTSGVIAQWFYI 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG + F+ +L L L+ P Sbjct: 138 GFGLLFFAANGHLAVIALLVDSYKALPIGTAVPDAAAFAEVAPTLLLQVLRGGLTLALPM 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F F Sbjct: 198 MVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRLFDSAF 255 >gi|170683764|ref|YP_001742350.1| lateral flagellar export/assembly protein LfiR [Escherichia coli SMS-3-5] gi|170521482|gb|ACB19660.1| lateral flagellar export/assembly protein LfiR [Escherichia coli SMS-3-5] Length = 260 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|299068760|emb|CBJ40000.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR family [Ralstonia solanacearum CMR15] Length = 262 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 97/241 (40%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV + I + P + + IP +++ F + ++ L P L + Sbjct: 11 GWIALYWWPLVRVLAFIAVAPPFANTEIPTSIKVAFGVVLTVALAPMLPVPSGIAVGSYE 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ ++ +G G+ +++ + G ++S IGL T + + + L Sbjct: 71 GLWITLL--QVAIGMALGVCVQMVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 I + + A D H + +AL S+ +P+ G + + F + +R++ Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGAAVFALAVRIA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + +V N++ +L++ + + + + +G + + + + + S + Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMNA 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|257095350|ref|YP_003168991.1| flagellar biosynthetic protein FliR [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047874|gb|ACV37062.1| flagellar biosynthetic protein FliR [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 261 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 99/241 (41%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ F + RV + + P + +P +VRL +A +I + P L L Sbjct: 11 AWVVAFFFPLARVLALLAAAPPFNNPALPARVRLALGLAITIGIAPVLPLMPALDPASGA 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ EL +G G +R+ + G+++S +GL ++ + ++ Sbjct: 71 GML--ILAQELIIGTAMGFAMRLVFSAVDMAGNIVSLEMGLGFASAYDPQTAGQTAVVSE 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 +G++ LL I+ H V L S+ IPIG +SS N F L L Sbjct: 129 FMGLLALLVFMAINGHLMVIATLTHSFSVIPIGGPRLGATTWSSLANSAAIVFSAGLFLV 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+++ +L++ PQ+ + I P I LG L + + F G Sbjct: 189 LPIIVALMISNLALAILSRAAPQLNLMAIGFPLTIALGFAALLFGLSYMGTPLQELFENG 248 Query: 247 F 247 Sbjct: 249 L 249 >gi|330505668|ref|YP_004382537.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina NK-01] gi|328919954|gb|AEB60785.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina NK-01] Length = 264 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 105/235 (44%), Gaps = 4/235 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + + CR+ + + + P + + ++VR+ A+A ++ L L D + + Sbjct: 15 LQAYWWPFCRIAALLSMAPLFNHKAVSVRVRVLLALALTVALGAALPDMPQIDPLSLKGL 74 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET-PLNSL 127 + L ++ G + GL +++ G V+ST +G+++ + ++ + + L Sbjct: 75 MTAL--EQIAFGVLLGLTLQLVFTIFMLVGEVVSTQMGMSMARYNDPVNGVSSSSIIYQL 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L + ID H L +S+ P+G L+F SF+ + ++ Sbjct: 133 YFILLVLLFFAIDGHLVTVSVLYQSFLFWPVGSGLHFQG-AQSFIQAFPWVLAAAVLVTL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P +F + GLLN++ P + ++ + P I +G L + L++ + + H Sbjct: 192 PVVFCLTLVQFCFGLLNRISPAMNLFSLGFPISILMGLLCIYLTLPNLPDSYLHL 246 >gi|238916766|ref|YP_002930283.1| flagellar biosynthetic protein FliR [Eubacterium eligens ATCC 27750] gi|238872126|gb|ACR71836.1| flagellar biosynthetic protein FliR [Eubacterium eligens ATCC 27750] Length = 257 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 102/224 (45%), Gaps = 2/224 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R+ S + P +M+ +P +V++ F+ +I++ D + Y+ Sbjct: 13 FVLILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMS--VEYNGMIEYAI 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E+ +G + G + + F G +I IG+++ + + + + + Sbjct: 71 IVVEEIIVGILLGAVSSFCVQIIMFAGKIIDMDIGISMAQLYDPTTRMQVGIMGNFYYYM 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L L + H + A+V++Y IPIG I++ + + F+I R++ P Sbjct: 131 MMLLLIISGMHQYLVSAIVETYRVIPIGGVKFGAGIYTGIIGFVSDFFVIGFRIALPVFA 190 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ N + +L K+ PQ+ ++ + I +G + +I ++ Sbjct: 191 AILMLNCVLAILAKVSPQMNMFVVGMQLKIFVGIFVILFTISML 234 >gi|224417781|ref|ZP_03655787.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT 98-5491] gi|253827123|ref|ZP_04870008.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313141324|ref|ZP_07803517.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT 98-5491] gi|253510529|gb|EES89188.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313130355|gb|EFR47972.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT 98-5491] Length = 256 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 2/241 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + L++ R I P I Q++ F +I+ LP + + + Sbjct: 9 EGNVTNFLLLLLRFAGIIAFFPFFENQLINTQIKGIFIFWLTILFLPLVTTMPP--SNLT 66 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + E+ LG + +++ + F G VIS A+GL + + + + Sbjct: 67 ILEFIIAGITEIMLGFLASFALQIVFGMISFGGEVISFAMGLTIANAYDPVTGAQKPIVG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ ++ L+ + +D+HH Y + +S IP+G L N + F+I L + Sbjct: 127 QLLTLLALMIVLALDYHHLFLYFVGESIKEIPLGGFLYSHNYIIYTIKAFSNLFLIGLTM 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P + ++ +I G++ K PQ + I P I + L + I I+ F FL Sbjct: 187 SFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAVAFAVLIVIIPAIMIHFKREFLS 246 Query: 246 G 246 Sbjct: 247 A 247 >gi|257866392|ref|ZP_05646045.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC30] gi|257873092|ref|ZP_05652745.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC10] gi|257800350|gb|EEV29378.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC30] gi|257807256|gb|EEV36078.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC10] Length = 249 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 105/229 (45%), Gaps = 4/229 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + LI CR+ + ++L P S P ++ MA +++ LP +L F+ Sbjct: 4 IQATVLIFCRILAFVVLCPIFSQKNFPSLAKIVIGMALTVLCLPTTPAIPELSLFM---- 59 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + V+ E+ G G L ++ G++ G +I +G ++ + + +A + Sbjct: 60 LTVFVIKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTY 119 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + + +D HH++ AL+ S+ +P+G + G V + ++ + L++P Sbjct: 120 YWLTIAVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAP 179 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + ++ ++ +G++++ +PQI I +S + + L + ++ Sbjct: 180 MIIALLLVDLVLGVISRSIPQINILMMSLSMKTAISFVVFLLLLPNVLS 228 >gi|163738054|ref|ZP_02145470.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis BS107] gi|161388670|gb|EDQ13023.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis BS107] Length = 259 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 120/235 (51%), Gaps = 6/235 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ R+G+ + +LP Y+P +++L ++AF++++ L + +Y L Sbjct: 23 IVFLRIGAMVSVLPAFGEKYVPARIKLAISLAFTLIVA---PALPILPPPASPLHYGSLA 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E +G G+ IR++ +Q G++ + + +L +G + + +++ I GL Sbjct: 80 LSEAVVGLALGMAIRMFVHAIQIAGTIAAQST--SLAQVLGGIGAEPMPAIGAVLLISGL 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 ++ H +V ++ SY P+G+ + + V+ + +F + L++PFL Sbjct: 138 ALAVMLGLHIRVAEFMIYSYMMFPVGEFPSASGLSDWGVHRVSRSFAMGFSLAAPFLIGS 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 +V+N+++G++N+ +P + + F+ P + G L ++ +I+ +S + L GFF Sbjct: 198 MVYNLTLGVINRAMPALMVAFVGAPVVTFGGLAILMVASPMILDIWSTA-LMGFF 251 >gi|224372500|ref|YP_002606872.1| flagellar biosynthesis protein FliR [Nautilia profundicola AmH] gi|223589960|gb|ACM93696.1| flagellar biosynthetic protein FliR [Nautilia profundicola AmH] Length = 255 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 3/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L+ R+ S + +P + + IPM V+ FA SI+L P T +N A Sbjct: 12 VVTYLLLFVRISSFLAFMPFFNYTAIPMNVKAAFAFWLSILLFPI---TPKFAYEINIAT 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 V+ E+ G+ +++ L++ G IS +G L M + + T ++ Sbjct: 69 VLLSVLNEVAFAFFVGMALQMVFDVLKYAGEQISFVMGFTLANVMDPNAGVQTTIISQFF 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + ++ H L K++ +P G+ ++ N++ F+ + F++ + ++ P Sbjct: 129 TWVAVMMFLSFGGDHLEIMFLDKTFAMLPFGEFFSYHNVYEYFITYMSKYFLLGIAMAFP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + ++ +I G++ K +PQ + + P I + + L I ++ FS+ L F Sbjct: 189 IIAISLMGDIIFGMIMKTMPQFNLLVVGFPIKITISFMVLIAIIASLMQLFSNEILQVF 247 >gi|126463740|ref|YP_001044854.1| type III secretion system inner membrane R protein [Rhodobacter sphaeroides ATCC 17029] gi|332559797|ref|ZP_08414119.1| FliR2 [Rhodobacter sphaeroides WS8N] gi|126105404|gb|ABN78082.1| type III secretion system inner membrane R protein [Rhodobacter sphaeroides ATCC 17029] gi|332277509|gb|EGJ22824.1| FliR2 [Rhodobacter sphaeroides WS8N] Length = 260 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P + D + + Sbjct: 23 FLVFLRVGAAMALLPAFGETSLPVRVRLAAALAFTAIVFPAVSDRVPTYDSTVAP----- 77 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E +G + G +R++ L LQ G++ + A +L G + + + +++ + G Sbjct: 78 LLTETAVGLLLGASLRLFVLALQTAGTIAAQAT--SLAQLFGSTAGEPQPVMTNILTLAG 135 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L H Q+ L++SY +P + + ++ + + ++ +F + L+ PF+ Sbjct: 136 LALAVAGGLHVQIALFLIQSYDILPAARLPDPADVATWGLALVVKSFALGFMLAMPFVAA 195 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIG 222 +FN+++G++N+ +PQ+ ++F+ P L Sbjct: 196 SFIFNVALGIVNRAMPQLMVFFVGAPALTF 225 >gi|225569960|ref|ZP_03778985.1| hypothetical protein CLOHYLEM_06055 [Clostridium hylemonae DSM 15053] gi|225161430|gb|EEG74049.1| hypothetical protein CLOHYLEM_06055 [Clostridium hylemonae DSM 15053] Length = 257 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 103/233 (44%), Gaps = 2/233 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M ++ + L++ R+ + L P L IP + A+ ++V+ P Sbjct: 1 MLLAGTPEFLVFTLVLMRMSGFVFLNPILGRKNIPAVFKTGLALVLALVVYP--QAEPAG 58 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + Y+ L++ E LG + G +++++ + + F GSVI +GL++ T + Sbjct: 59 EEVTSAVVYAVLLLKEFALGYLLGFVMQLFDMVVSFAGSVIDFQMGLSMATVYDAQNGTQ 118 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 +++ I LL + +D H + L+ S +P + + + + Sbjct: 119 IALTGNILQIYYLLLFFAVDGHLALLKILMTSQDIVPYAALKLGTGSAQAVLQIFTECVV 178 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 + ++L+ P + F + ++ GLL +++PQI ++ +S + +G + I Sbjct: 179 LAVKLAFPIIAFEFLVEVATGLLMRIIPQINLFVMSIQLRVIIGLAMMVFLIS 231 >gi|310820309|ref|YP_003952667.1| type III secretion system inner membrane r protein [Stigmatella aurantiaca DW4/3-1] gi|309393381|gb|ADO70840.1| Type III secretion system inner membrane R protein [Stigmatella aurantiaca DW4/3-1] Length = 273 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 113/245 (46%), Gaps = 5/245 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ ++ L++CR+ ++ P L +P +VR+ + S+VL P + D + + Sbjct: 19 LMIFTIGLLMCRIMPVLIFSPFLGGEVVPPEVRMGVGVTLSLVLFPSVADRMGALP-TSA 77 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 Y L++ E+F+G ++ + + G+++ T G N + +S Sbjct: 78 LPYIALLLKEVFIGVSLAFIVNIIFDAARVAGTLVDTMAGSNNAQLYVPQLGQQVSLFSS 137 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF----MIM 182 L + ++ +D HH V AL S+ +P+ F +F ++ F I Sbjct: 138 LKVQLSVVLFLTLDGHHIVISALADSFAIVPLDSFPKFSKGTWAFFEVISRAFANLLAIS 197 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 L L++P + + ++++G +N++ P + ++FI+ + L L++ +++ +F Sbjct: 198 LSLAAPQMLSAFLTDLAMGAVNRVAPNLQVFFIAMAIKPMVSVLIAALALHMLIGRFQSE 257 Query: 243 FLYGF 247 F++ Sbjct: 258 FVHML 262 >gi|283784008|ref|YP_003363873.1| flagellar biosynthetic protein [Citrobacter rodentium ICC168] gi|282947462|emb|CBG87009.1| flagellar biosynthetic protein [Citrobacter rodentium ICC168] Length = 260 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ L+ R+ + I +P + + ++VR+ ++A +IV+ P + + + + Sbjct: 12 LVLGLWFPFVRIMAFIRYVPVFDNAALTIRVRIILSLALAIVITPMIP--HPVPDSLLSM 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L ++ G + GL+ + L LQ G ++S +G+++ + T L L Sbjct: 70 NSLILTAEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPGSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + ++ + +D H + L K + PIG L+ + + + L+ Sbjct: 130 INVYAVILFFAMDGHLLLVSVLYKGFTYWPIGNALHPQS-LRTLALAFSWVLGSAMLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + +Y + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRVAPPLNLYSLGFPINMLAGLICFATLLYNLPDHYLHL 243 >gi|254462422|ref|ZP_05075838.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium HTCC2083] gi|206679011|gb|EDZ43498.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium HTCC2083] Length = 273 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 100/228 (43%), Gaps = 2/228 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + FL R+ + + P + IP+QVR+ ++ S+ + + + Sbjct: 27 LVFFLHTIRLSAFFLSAPFFGAASIPVQVRVMVSILISVSFFGKV--EVPDPQTLPFLLL 84 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 +++MVE+ +G + GL++ V + G ++++ GL + + ++ L+ Sbjct: 85 VEVIMVEIAMGLLLGLILTVLFSSVALAGEKVASSAGLGFAAQVDPNLGGQTPVISQLLN 144 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + G++ +D H + SY +P+G+ NF + +S + F + LS P Sbjct: 145 LFGIVLFLAMDGHLVCIALIKGSYDLMPLGRPFNFQALIASGLTSGGHMFSMASLLSFPI 204 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + ++ NI++G++ + PQ+ ++ P I L + + + Sbjct: 205 VAILLLANITVGVITRSAPQLNLFSFGFPLTILACFFALYFATTPMAF 252 >gi|289670561|ref|ZP_06491636.1| flagellar biosynthetic protein FliR [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 257 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A ++VL P L + F ++ S Sbjct: 14 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQSVLS 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + I Sbjct: 74 --IARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYI 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L F+ + L L+ P Sbjct: 132 GFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPM 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F F Sbjct: 192 MVAMLAVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 249 >gi|307720324|ref|YP_003891464.1| flagellar biosynthetic protein FliR [Sulfurimonas autotrophica DSM 16294] gi|306978417|gb|ADN08452.1| flagellar biosynthetic protein FliR [Sulfurimonas autotrophica DSM 16294] Length = 254 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 105/242 (43%), Gaps = 3/242 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ L+ R + +P + IPM ++ A F++V + L ++ Sbjct: 9 ETNVVGFLLLFFRFAGLFIAVPIFNHQNIPMNIKASMAFFFAVVFYSSMPA---LHISID 65 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 V+ EL LG G+++++ + F G IS +G ++ +++ ++ ++ Sbjct: 66 VPTILVAVLGELLLGLSVGVVLQLAYNVITFAGGQISFMMGFSMASAIDPQSGVSMPIIS 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++GL+ L ++ HH + + S T+P+G + ++F ++ F++ + Sbjct: 126 QFLSLMGLMILLSLNLHHWMLLFIDHSLKTVPLGGFVMSKDLFHYIMHATSNMFLVGFII 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P + + ++ G+L K +PQ + I P I + + L + I+ Sbjct: 186 AFPIIALSWLADVIFGMLMKTMPQFNLLVIGFPIKIMVAFVVLIATFTAIMLILKGQIQE 245 Query: 246 GF 247 F Sbjct: 246 AF 247 >gi|306813327|ref|ZP_07447520.1| flagellar biosynthetic protein FliR [Escherichia coli NC101] gi|305854090|gb|EFM54529.1| flagellar biosynthetic protein FliR [Escherichia coli NC101] Length = 260 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + +VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYMPVLDNSALTARVRIILSLALAIIITPLIP--HPVPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|59712447|ref|YP_205223.1| flagellar biosynthesis protein FliR [Vibrio fischeri ES114] gi|59480548|gb|AAW86335.1| flagellar export pore protein FliR [Vibrio fischeri ES114] Length = 260 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 92/239 (38%), Gaps = 1/239 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ + +M++ ++ ++RL ++ + ++P + V+ Sbjct: 11 FIATYFWPYTRISAMLMVMSVFGARFVSPRIRLYLGLSITFAVMPAIPAMPPGIQLVSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G++ T G ++ L + + ++ L L Sbjct: 71 GFMT-TAEQIIIGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L D H ++ +V S+ T+P+G + S + L L +S Sbjct: 130 FMFLSILFFLGTDGHLKMINFVVMSFTTLPVGVGKLTSVDYQSMASWLGIMMKAGLSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + N+S G++ + PQ+ I+ + + + +G L I + + +L Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIILGLFNHYDLHWLRA 248 >gi|285018168|ref|YP_003375879.1| flagellar biosynthetic protein flir [Xanthomonas albilineans GPE PC73] gi|283473386|emb|CBA15891.1| probable flagellar biosynthetic protein flir [Xanthomonas albilineans] Length = 263 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R+G+ +M++P + IP ++R+ A ++ L P L D F S Sbjct: 20 AILWTMLRIGAMLMVMPLVGTRAIPARIRVILAATLAMALAPLLPPVPDWNGFDATVVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 V EL +G G ++R+ G +IS + GL + + + Sbjct: 80 --VARELAVGASMGFMLRMIFEAGAMAGEMISQSTGLGFAQMADPLRGVNSGVIGQWFYL 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L + + + L L+ P Sbjct: 138 AFGLLFFTANGHLAVVALLVDSYKALPIGSALPDAQAMITVAPDFFMSMMRGALTLALPV 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + I P + LG L + + + F F Sbjct: 198 IVAMLAVNLAFGALAKAAPALNPIQIGLPVAMVLGLALLAILVNEMGPPVQRLFDAAF 255 >gi|163742550|ref|ZP_02149936.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis 2.10] gi|161384135|gb|EDQ08518.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis 2.10] Length = 259 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 119/235 (50%), Gaps = 6/235 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ R+G+ + +LP Y+P +++L ++AF+ ++ L + +Y L Sbjct: 23 IVFLRIGAMVSVLPAFGEKYVPARIKLAISLAFTFIVA---PALPILPPPASPLHYGSLA 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E +G G+ IR++ +Q G++ + + +L +G + + +++ I GL Sbjct: 80 LSEAVVGLALGMAIRMFVHAIQIAGTIAAQST--SLAQVLGGIGAEPMPAIGAVLLISGL 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 ++ H +V ++ SY P+G+ + + V+ + +F + L++PFL Sbjct: 138 ALAVMLGLHIRVAEFMIYSYMMFPVGEFPSASGLSDWGVHRVSRSFAMGFSLAAPFLIGS 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 +V+N+++G++N+ +P + + F+ P + G L ++ +I+ +S + L GFF Sbjct: 198 MVYNLTLGVINRAMPALMVAFVGAPVVTFGGLAILMVASPMILDIWSTA-LMGFF 251 >gi|158320531|ref|YP_001513038.1| flagellar biosynthesis protein FliR [Alkaliphilus oremlandii OhILAs] gi|158140730|gb|ABW19042.1| flagellar biosynthetic protein FliR [Alkaliphilus oremlandii OhILAs] Length = 262 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 113/237 (47%), Gaps = 2/237 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R+ ++ P S + +PM +++ A+ S++LLP ++L + N Sbjct: 16 FLLILTRLTGLFVISPIFSRANVPMTMKIGLAVTLSLILLPLSIHNVNL-DINNIRALIF 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 E +G + G + +Y + G+VI +G + M + ++ L I+ Sbjct: 75 FSTTEFLIGIIIGFISFIYFSVVYLAGTVIDIQMGFGMVNIMDPQTNAQMPIMSGLYSIL 134 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELN-FGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L ++ HH + +++ SY +PIG +++ NI + +ML TF + L+LS+P L Sbjct: 135 ISLVFLTVNGHHMLIQSIIHSYEVLPIGFQISINQNIITHLTHMLLETFALSLQLSAPIL 194 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N+ +G+L + +PQ+ I+ + P I +G + + LS+ + F F Sbjct: 195 ISIFLVNVILGILARTMPQMNIFMVGMPLKIFIGIIIVFLSLSFFISYSEVVFDKMF 251 >gi|90415340|ref|ZP_01223274.1| Bacterial export protein, family 1 [marine gamma proteobacterium HTCC2207] gi|90332663|gb|EAS47833.1| Bacterial export protein, family 1 [marine gamma proteobacterium HTCC2207] Length = 256 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +L + RV + ++ P S+ + ++VR+ A ++++ P + I Sbjct: 12 FYTLLWPMIRVSAFLLASPFFSLRAVNVRVRVLLAALLTLMIYPLVDWPIIDPYSAAG-- 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + ++ +G V G+L+++ L G +S+A+GL + + + ++ Sbjct: 70 -LREIFNQILIGTVMGMLLQIVNASLVIGGQAVSSAMGLGMANMIDPNMG-NVPVISQFF 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I L I H V +++S+ T+P+GQ L + + + F+ L L+ P Sbjct: 128 IICSTLIFMGIGGHVLVISLILESFKTLPVGQMLAPDMLMAVLLQWSSMIFLGGLLLALP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + NI +G++ + P + I+ + P +I +G + L S+ I Y+ + F Sbjct: 188 IMVSLLFVNIGVGVITRAAPALNIFAVGFPAMIMVGMVLLATSMTSIGYRIQWLWRESF 246 >gi|218703504|ref|YP_002411023.1| Flagellar biosynthetic protein fliR [Escherichia coli UMN026] gi|293403335|ref|ZP_06647426.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298378946|ref|ZP_06988827.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302] gi|300898062|ref|ZP_07116431.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1] gi|59889760|emb|CAH19115.1| Lateral flagellar export/assembly protein (FliR-like) [Escherichia coli] gi|218430601|emb|CAR11467.1| Flagellar biosynthetic protein fliR [Escherichia coli UMN026] gi|284920024|emb|CBG33080.1| flagellar biosynthetic protein [Escherichia coli 042] gi|291429188|gb|EFF02208.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280059|gb|EFI21563.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302] gi|300358240|gb|EFJ74110.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1] Length = 260 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 101/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + +G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLLYNLPDHYLHL 243 >gi|327254529|gb|EGE66145.1| flagellar biosynthetic protein FliR [Escherichia coli STEC_7v] Length = 260 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLIFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|194365645|ref|YP_002028255.1| flagellar biosynthetic protein FliR [Stenotrophomonas maltophilia R551-3] gi|194348449|gb|ACF51572.1| flagellar biosynthetic protein FliR [Stenotrophomonas maltophilia R551-3] Length = 263 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 88/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R+G+ M +P + +P +VR+ A +I L P L D F + Sbjct: 20 TVLWTMLRIGAVAMAMPMVGTRAVPARVRVVLAGTLAIALAPLLPPVPDWTGFDAATVLT 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G L+R+ G +I+ GL + + Sbjct: 80 --IARELAIGVSIGFLLRLVFEAGAMAGELIAQGTGLAFAQMSDPLRGGTSGVIGQWFYL 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 + L + + H + +V SY +PIG L + F S L T L L+ P Sbjct: 138 LFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTLAIPL 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N++ G+L + P + + P + LG L L + F F Sbjct: 198 TVAMLAVNLAFGVLARAAPALNPIQLGLPVSLLLGLFLLALLAGEMGPPVQRLFDAAF 255 >gi|260853446|ref|YP_003227337.1| putative lateral flagellar export pore protein [Escherichia coli O26:H11 str. 11368] gi|300817292|ref|ZP_07097510.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1] gi|307315218|ref|ZP_07594797.1| flagellar biosynthetic protein FliR [Escherichia coli W] gi|331666525|ref|ZP_08367399.1| flagellar biosynthetic protein FliR [Escherichia coli TA271] gi|257752095|dbj|BAI23597.1| predicted lateral flagellar export pore protein [Escherichia coli O26:H11 str. 11368] gi|300530268|gb|EFK51330.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1] gi|306905399|gb|EFN35936.1| flagellar biosynthetic protein FliR [Escherichia coli W] gi|315059467|gb|ADT73794.1| Flagellar biosynthetic protein fliR [Escherichia coli W] gi|323158015|gb|EFZ44116.1| flagellar biosynthetic protein FliR [Escherichia coli EPECa14] gi|323171039|gb|EFZ56688.1| flagellar biosynthetic protein FliR [Escherichia coli LT-68] gi|323181525|gb|EFZ66945.1| flagellar biosynthetic protein FliR [Escherichia coli 1357] gi|323379975|gb|ADX52243.1| flagellar biosynthetic protein FliR [Escherichia coli KO11] gi|331065749|gb|EGI37633.1| flagellar biosynthetic protein FliR [Escherichia coli TA271] Length = 260 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPVPHDLISL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|313672723|ref|YP_004050834.1| flagellar biosynthetic protein flir [Calditerrivibrio nitroreducens DSM 19672] gi|312939479|gb|ADR18671.1| flagellar biosynthetic protein FliR [Calditerrivibrio nitroreducens DSM 19672] Length = 259 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ FL V R+ + P I +++L ++ I++ PF+ + N Sbjct: 11 IVLFFLTVVRISGILFTAPVFGSEIISARIKLFLSILIGILIFPFITAI--DLSKANNLL 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 +++ EL +G GL+ R +G+QF G VI T +G + + ++ + + Sbjct: 69 MILIIIKELLIGIATGLIGRFLFVGVQFGGQVIGTQMGFGIVNVLDPQNNAQISLVAQFQ 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 II +L VI H + A+VKS+ IP+G + + V + F+ L++++P Sbjct: 129 NIIMILFFLVIGGHLYIIQAIVKSFEMIPLGVFVFNKESYIFIVTIFSKIFLTALKITAP 188 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +V + +G++ +LVPQ+ I I P I G + + S+ F Sbjct: 189 IFVTLLVTQVVLGIMGRLVPQLNILIIGFPIQIAGGLIVIITSLTFFYSMFESL 242 >gi|119476305|ref|ZP_01616656.1| Flagellar biosynthesis pathway, component FliR [marine gamma proteobacterium HTCC2143] gi|119450169|gb|EAW31404.1| Flagellar biosynthesis pathway, component FliR [marine gamma proteobacterium HTCC2143] Length = 258 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 96/235 (40%), Gaps = 2/235 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + S R+G+ + P +P +VR+ A ++ + P L + Sbjct: 11 GWLGSAMWPFFRIGAFFLAAPIFGTQLVPARVRIVLAFLMTLAIAPNLPPMPVVDAVSVS 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A+ L ++ +G G ++++ G +I+ +GL + + ++ + T L+ Sbjct: 71 AF--VLTAQQILIGVAMGFSMQIFLQIFVVGGQIIAMHMGLGFASMVDPANGVTVTVLSQ 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ L ++ H + L S+ T+P+G F L L+ Sbjct: 129 FHLMLITLLFVSMNGHLAMIEVLAASFYTLPVGFAFISKTALLDLAGHAGWMFTSALLLA 188 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ N+S+G++ + PQ+ I+ I P ++ LG + +++ + F Sbjct: 189 LPAVAALMIVNMSLGVVTRAAPQLNIFSIGFPSMLLLGLCIVWVTMIGYLPLFDR 243 >gi|157959921|ref|YP_001499955.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC 700345] gi|157844921|gb|ABV85420.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC 700345] Length = 259 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 105/246 (42%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 + + + + CR+ M++P LS +YIP+ VR+ A+ S ++ P L ++ Sbjct: 6 STELSTFIGTFWWPFCRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPPLPEVD 65 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 +A L + +L +G + L + + + G ++S +GL + S + Sbjct: 66 AISIQALL--LAIEQLLVGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSGGSH 123 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L + G L V+D H LV S+ P+G + F + + F + Sbjct: 124 PILGQWFLLYGTLVFLVLDGHLVAIGVLVDSFRLWPVGMGV-FDLPLMGLIGRISWLFAV 182 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L+ P + ++ NI+ G+L++ P + ++ + P + +G L + S + ++S Sbjct: 183 SFMLAIPSILAMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRYSD 242 Query: 242 SFLYGF 247 L Sbjct: 243 LCLDAL 248 >gi|300936101|ref|ZP_07151042.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1] gi|300458750|gb|EFK22243.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1] Length = 260 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 101/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LVLGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|21242685|ref|NP_642267.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108158|gb|AAM36803.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri str. 306] Length = 257 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A ++VL P L + F +A S Sbjct: 14 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + I Sbjct: 74 --IARELAVGASMGFMLKLMFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYI 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L F+ + L L+ P Sbjct: 132 GFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPM 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F F Sbjct: 192 MVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAF 249 >gi|166712020|ref|ZP_02243227.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 263 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 3/238 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R G+ + +P + +P +VR+ A ++VL P L + F +A S Sbjct: 20 AIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLS 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G ++++ G ++S + GL+ + + I Sbjct: 80 --IARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYI 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 L + + H V LV SY +PIG L F+ + L L+ P Sbjct: 138 GFGLLFFAANGHLAVIALLVDSYKALPIGTVLPDAGAFAEVAPTLFLQILRGGLTLALPM 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N++ G L K P + + P + LG L F Sbjct: 198 MVAMLAVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAL 255 >gi|77464898|ref|YP_354402.1| flagellar biosynthesis pathway, component FliR [Rhodobacter sphaeroides 2.4.1] gi|77389316|gb|ABA80501.1| Flagellar biosynthesis pathway, component FliR [Rhodobacter sphaeroides 2.4.1] Length = 260 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 108/210 (51%), Gaps = 7/210 (3%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P + D + + Sbjct: 23 FLVFLRVGAAMALLPAFGETSLPVRVRLAAALAFTAIVFPAVSDRVPTYDSTVAP----- 77 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E +G + G +R++ L LQ G++ + A +L G + + + +++ + G Sbjct: 78 LLTETAVGLLLGASLRLFVLALQTAGTIAAQAT--SLAQLFGSTAGEPQPVMTNILTLAG 135 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L H Q+ L++SY +P + ++ + + ++ +F + L+ PF+ Sbjct: 136 LALAVAGGLHVQIALFLIQSYDILPAARLPEPADVATWGLALVVKSFALGFLLAMPFVAA 195 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIG 222 +FN+++G++N+ +PQ+ ++F+ P L Sbjct: 196 SFIFNVALGIVNRAMPQLMVFFVGAPALTF 225 >gi|146309438|ref|YP_001189903.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina ymp] gi|145577639|gb|ABP87171.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina ymp] Length = 264 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 105/235 (44%), Gaps = 4/235 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + + CR+ + + + P + + ++VR+ A+A ++ L L D + + Sbjct: 15 LQAYWWPFCRILALLSMAPLFNHKAVSVRVRILLALALTVALGAALPDMPPIDPLSLQGL 74 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN-SL 127 + L ++ G + GL +++ G V+ST +G+++ + ++ + + L Sbjct: 75 MTAL--EQIAFGVLLGLTLQLVFTIFMLVGEVVSTQMGMSMARYNDPVNGVSSSSIVYQL 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L + ID H L +S+ P+G L++ SFV + ++ Sbjct: 133 YFILLVLLFFAIDGHLVTVSVLYQSFLFWPVGSGLHYLG-AQSFVQAFAWVLAAAVLVTL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P +F + GLLN++ P + ++ + P I +G L + L++ + + H Sbjct: 192 PIVFCLTLVQFCFGLLNRISPAMNLFSLGFPISILMGLLCIYLTLPNLPDSYLHL 246 >gi|293408346|ref|ZP_06652185.1| flagellar biosynthetic protein FliR [Escherichia coli B354] gi|291471524|gb|EFF14007.1| flagellar biosynthetic protein FliR [Escherichia coli B354] Length = 260 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 101/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LVLGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIELAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|323975951|gb|EGB71045.1| flagellar biosynthetic protein FliR [Escherichia coli TW10509] Length = 260 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 100/234 (42%), Gaps = 3/234 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + M+VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTMRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLH 242 >gi|257876005|ref|ZP_05655658.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC20] gi|325567517|ref|ZP_08144184.1| flagellar biosynthetic protein [Enterococcus casseliflavus ATCC 12755] gi|257810171|gb|EEV38991.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus EC20] gi|325158950|gb|EGC71096.1| flagellar biosynthetic protein [Enterococcus casseliflavus ATCC 12755] Length = 249 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 105/229 (45%), Gaps = 4/229 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + LI CR+ + ++L P S P ++ MA +++ LP +L F+ Sbjct: 4 IQATVLIFCRILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPAIPELSLFM---- 59 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + V+ E+ G G L ++ G++ G +I +G ++ + + +A + Sbjct: 60 LTVFVIKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTY 119 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + + +D HH++ AL+ S+ +P+G + G V + ++ + L++P Sbjct: 120 YWLTIAVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAP 179 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + ++ ++ +G++++ +PQI I +S + + L + ++ Sbjct: 180 MIIALLLVDLVLGVISRSIPQINILMMSLSMKTAISFVVFLLLLPNVLS 228 >gi|294339802|emb|CAZ88165.1| Flagellar biosynthetic protein FliR [Thiomonas sp. 3As] Length = 264 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 4/244 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + F RV + + L P SM +P VR+ A+ ++ + P L +Q Sbjct: 10 ETWIGAFFWPFVRVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPAMPPVQFGTA 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A+ L L +G GL + + + F GSVI +G+ T + T L Sbjct: 70 TAWMLLLQQ--LLVGGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQGVQVTSLA 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM--LQTTFMIML 183 S + ++ +L ++ H + + +S+ +P+ L + F + L Sbjct: 128 SFLNMVTMLLFLAVNGHLILLAVIARSFTLLPVAPNLGLAAQTWFTLAQQGGSAIFSLGL 187 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L++P + ++ N+ +G+L KL PQ+ ++ + P +G L L L + ++ H Sbjct: 188 ALAAPVIGVLLIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQNVVQHLV 247 Query: 244 LYGF 247 G Sbjct: 248 DVGL 251 >gi|256017857|ref|ZP_05431722.1| flagellar biosynthesis protein FliR [Shigella sp. D9] gi|293446330|ref|ZP_06662752.1| flagellar biosynthetic protein FliR [Escherichia coli B088] gi|332278883|ref|ZP_08391296.1| flagellar biosynthetic protein FliR [Shigella sp. D9] gi|291323160|gb|EFE62588.1| flagellar biosynthetic protein FliR [Escherichia coli B088] gi|332101235|gb|EGJ04581.1| flagellar biosynthetic protein FliR [Shigella sp. D9] Length = 261 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T + + L L + Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ LL + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 129 MDMLTLLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248 >gi|310764876|gb|ADP09826.1| Flagellar biosynthetic protein FliR [Erwinia sp. Ejp617] Length = 259 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 4/231 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + + + P S + +VR+ A+ + ++ + D + Sbjct: 17 YFLVMVRIAALLTVAPVFSEKSVNTRVRVGLALLIAALI---GGNIPDSHIALYSFQGVW 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V +L +G GL +++ + ++ G +I +GL+ T S + + ++ Sbjct: 74 AVGKQLLIGAALGLSMQLLFVAVRMAGEIIGMQMGLSFATFFDPSAG-NVPVIARFLNLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L V + H + L +S+ +P+ F V F L L P + Sbjct: 133 VTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGFFLLVQQAGLVFREGLMLGLPIIS 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + N ++GLLN+L PQ+ I+ I P + +G + L L + + Sbjct: 193 LLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSLISQTLAPFIEKL 243 >gi|158422279|ref|YP_001523571.1| flagellar biosynthesis protein FliR [Azorhizobium caulinodans ORS 571] gi|158329168|dbj|BAF86653.1| type III secretion system inner membrane R protein [Azorhizobium caulinodans ORS 571] Length = 249 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 135/243 (55%), Gaps = 2/243 (0%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDL 60 I ++ ++S FL+ CR+GSCIM++PGLS +P++VRL A+A S+ +LP ++D ++ Sbjct: 1 MIPLDVSILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYDDLVNF 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 N A + E+ G + G L R++ L LQ I+ IGL+ + D Sbjct: 61 IRNANSAQLLLSIGTEMATGAIIGTLARIFYLMLQMMLVAIAQFIGLSSPMGL-PEDGEV 119 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 L +L+ + +++ D H+++ L+ SY IP+G + L M Sbjct: 120 LPSLATLMILAATTMMFLTDQHYEMLRGLIASYRQIPVGVGFGGRGALIQASDQLSAALM 179 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 I +RL+SPFL + ++ N ++GL+NKLVPQIP+YFIS P+++ G + L + ++ FS Sbjct: 180 IAMRLASPFLIYSLIINFAVGLINKLVPQIPVYFISAPFILLGGLILLYGLSDQMLTAFS 239 Query: 241 HSF 243 +F Sbjct: 240 AAF 242 >gi|172057871|ref|YP_001814331.1| flagellar biosynthetic protein FliR [Exiguobacterium sibiricum 255-15] gi|171990392|gb|ACB61314.1| flagellar biosynthetic protein FliR [Exiguobacterium sibiricum 255-15] Length = 255 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 87/232 (37%), Gaps = 6/232 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ ++ P S +P Q +L A + + T+ + + + Sbjct: 10 FLLVFGRLVGFLVAAPLFSSKQLPAQHKLAIAAGLAYFASYAVKTTVQV----DDIDFFF 65 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E+ +G GLL Q GS+I +GL + ++ + ++ Sbjct: 66 RMGTEVIIGLALGLLASFLLYAPQIAGSIIDLQMGLAMASAYDPMFGGQSPIVGRFYYML 125 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSPF 189 LL L D H + + S+ P G ++ S V ++ + L+++ P Sbjct: 126 TLLVLLASDMHLILLDGIYTSFKIFPPGSAIDVSGEAGMSLVVRVVGLAMLTALQIAMPL 185 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + ++++G L K PQ I+ I + +G L L + S Sbjct: 186 VVALFLVDLALGFLAKTAPQFNIFAIGFSVKLLMGYAILFLLAGATITGISR 237 >gi|260866392|ref|YP_003232794.1| putative lateral flagellar export pore protein [Escherichia coli O111:H- str. 11128] gi|257762748|dbj|BAI34243.1| predicted lateral flagellar export pore protein [Escherichia coli O111:H- str. 11128] Length = 260 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPVPHDLISL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTMEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|270262393|ref|ZP_06190664.1| flagellar biosynthetic protein FliR [Serratia odorifera 4Rx13] gi|270043077|gb|EFA16170.1| flagellar biosynthetic protein FliR [Serratia odorifera 4Rx13] Length = 260 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F + R+ + I P S I +V++ I++ P L + + Sbjct: 11 VWLSHYFWPLLRILALISTAPVFSEKQIGKKVKIGLGGLIVILIAPGLPTS---AVPIFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L ++ +G GL ++ ++ G VI +GL+ T S L Sbjct: 68 AAGLWLAAQQILIGVALGLTMQFAFAAIRLAGEVIGMQMGLSFATFFDPSGGPNTPVLAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ +L D H + L S+ T+PI GN F + + F+ + L+ Sbjct: 128 LLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQPAPLNGNGFLALTQVGSLIFINGMMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++GLLN++ PQ+ ++ I P + +G + + + + ++ H F Sbjct: 188 LPLICLLLTLNMALGLLNRMTPQLSVFVIGFPVTMTIGIMTIGMMMPMLAPFCEHLFGEF 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|259907618|ref|YP_002647974.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae Ep1/96] gi|224963240|emb|CAX54724.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae Ep1/96] gi|283477460|emb|CAY73376.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae DSM 12163] Length = 259 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 4/231 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + + + P S + +VR+ A+ + ++ + D + Sbjct: 17 YFLVMVRIAALLTVAPVFSEKSVNTRVRVGLALLIAALI---GGNIPDSHIALYSFQGVW 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V +L +G GL +++ + ++ G +I +GL+ T S + + ++ Sbjct: 74 AVGKQLLIGAALGLSMQLLFVAVRMAGEIIGMQMGLSFATFFDPSAG-NVPVIARFLNLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L V + H + L +S+ +P+ V F L L P + Sbjct: 133 VTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGLFLLVQQAGLVFREGLMLGLPIIS 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + N ++GLLN+L PQ+ I+ I P + +G + L L + + Sbjct: 193 LLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSLISQTLAPFIEKL 243 >gi|331269330|ref|YP_004395822.1| flagellar biosynthetic protein FlhB [Clostridium botulinum BKT015925] gi|329125880|gb|AEB75825.1| flagellar biosynthetic protein FlhB [Clostridium botulinum BKT015925] Length = 594 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 100/226 (44%), Gaps = 1/226 (0%) Query: 19 VGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78 + S + ++P P V++ F + S +++P + D + N ++E+ Sbjct: 1 MFSFVEVVPVFFPKGTPNVVKIMFTVILSFMIIPGI-DYSSMININGNLQLIMYCLIEIT 59 Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138 G G + + +++ G+ + +G + T + + T + L+ L+ + Sbjct: 60 TGLTFGFVTNICFSCIRYAGAFMDLQVGFAMMTMFDPNSNSNVTLIERLLYWFSLIVFTI 119 Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 +D + ++S+ I IG+ + N +N+ F + +R++ P + I+ ++ Sbjct: 120 VDGPRMIIKIFIESFNVIHIGKFILNQNSAMHVINVFIKYFQLGIRIAIPIVLIIILTDL 179 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++GL+ K VPQ+ I + P I LG L LS+ +I SF Sbjct: 180 TMGLVAKTVPQLNIMILGMPVKIILGLSVLGLSLPVIFNIIISSFD 225 >gi|269796380|ref|YP_003315835.1| flagellar biosynthetic protein FliR [Sanguibacter keddieii DSM 10542] gi|269098565|gb|ACZ23001.1| flagellar biosynthetic protein FliR [Sanguibacter keddieii DSM 10542] Length = 252 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 95/215 (44%), Gaps = 4/215 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + SL L+ R+ + +++ P S IP V++ A ++ + P + + + + Sbjct: 8 GALESLMLVGVRMVAFLVVAPPFSHRGIPATVKVMLATGLALAVSPRVENLVP----DST 63 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 Y L++ E +G G L+ V +Q G++I G +L + Sbjct: 64 GEYVVLLVGEAIIGAGLGFLVAVVFSAVQSAGALIDLMGGFSLAQGFDPMTQVNGAQFAR 123 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L + ++ L+ + + V LV+++ +P+G L+ + + + L F+ L+++ Sbjct: 124 LYQLTAVVILFASNGYQMVIGGLVRTFDALPLGSTLDLARLGEALTSSLTGMFLATLQIA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 P + + ++ +GLL ++ P + + + P I Sbjct: 184 GPLVVVLFLADVGLGLLTRVAPALNAFALGFPLKI 218 >gi|301646789|ref|ZP_07246643.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1] gi|307136836|ref|ZP_07496192.1| flagellar biosynthetic protein FliR [Escherichia coli H736] gi|301075024|gb|EFK89830.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1] gi|315616849|gb|EFU97466.1| flagellar biosynthetic protein FliR [Escherichia coli 3431] Length = 260 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|237753461|ref|ZP_04583941.1| flagellar biosynthetic protein flir [Helicobacter winghamensis ATCC BAA-430] gi|229375728|gb|EEO25819.1| flagellar biosynthetic protein flir [Helicobacter winghamensis ATCC BAA-430] Length = 259 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 2/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + L++ R I P I Q++ +I +P L + + Sbjct: 9 EGNVANFLLLLLRFAGIIAFFPFFENQLITAQLKGTLIFLLTIFFIPLL--DVVPPSEWT 66 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + E+ LG + + +++ + F G +IS A+GL + + + + Sbjct: 67 ILRFIVAGLSEVMLGFLASMALQIVFGMISFGGELISFAMGLTIANAYDPVTGAQKPIVG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ ++ LL + +D+HH FY + +S IP+G + N + F+I L + Sbjct: 127 QLLTLLALLIMLGLDYHHLFFYFVSESVKEIPLGGFMYSQNYIEYIIKSFSHIFVIGLTM 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P + ++ +I G++ K PQ + I P I + L + + I+ F FL Sbjct: 187 SFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAIAFAVLIVIVPAIILHFKREFLS 246 Query: 246 GF 247 F Sbjct: 247 AF 248 >gi|212637761|ref|YP_002314286.1| flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3] gi|212559245|gb|ACJ31699.1| Flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3] Length = 259 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + + CR+ M++P L SY+P+ VR+ A++ S+++ P L ++ +A Sbjct: 12 FIATFWWPFCRIMGAFMVMPFLGSSYVPVMVRILLAISISVLIAPILPPFPEVDAISLQA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + +L +G + L + + + G+++S +GL + ++ + L Sbjct: 72 LFLG--IEQLLVGFMLALFLTIMIHVMSLVGAMMSMQMGLAMAIMNDPANGGSNPILGQW 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + G L +D H LV S+ PIG + F + + F L+ Sbjct: 130 FLLYGTLLFLALDGHLVALGILVDSFRLWPIGMGV-FDLPLMGLIGRISWIFAASFMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ N++ G+L++ P + ++ + P + +G L + S + ++S L Sbjct: 189 PAVLAMLMVNVTFGVLSRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRYSDLCLDAL 248 >gi|289678969|ref|ZP_06499859.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae FF5] Length = 199 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 1/181 (0%) Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 L+ ++ +G GL ++++ G +IST +G+ + + ++ + Sbjct: 3 PPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGV 62 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 + + ++ L ++ H V LV+S+ T+P+G L N F N L Sbjct: 63 SSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNN-FWELANGLGWAL 121 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 LRL P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+ Sbjct: 122 ASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQY 181 Query: 240 S 240 Sbjct: 182 Q 182 >gi|317051543|ref|YP_004112659.1| type III secretion system inner membrane R protein [Desulfurispirillum indicum S5] gi|316946627|gb|ADU66103.1| type III secretion system inner membrane R protein [Desulfurispirillum indicum S5] Length = 264 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L R S ++ +P L + MQV++ ++ S +L P + + N Sbjct: 15 TFILSFIRTLSIVVSMPVLGGEQVKMQVKIGLSLLVSALLFPMVSAHGAVIPP-NIFELM 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 ++ E+F+G G ++ +QF G ++ +GL++ + ++ + + I Sbjct: 74 IVIFKEIFIGLAIGFAGQIILGIIQFAGQIMGFQVGLSMSNVLDPMTNIQVPIIGQFLTI 133 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +L + + HH VF L +SY IP+G N G + + T F + +++ P Sbjct: 134 FVVLLFLLANGHHYVFMGLYESYTLIPLGMLSFGNLGGFAQLVIELAATIFYVGFKITGP 193 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ G+L K+VPQI + + P I G L L L I + F Sbjct: 194 VFVVVLISQSINGILGKMVPQINLLTVGLPVQIFFGLLTLALVIPALRVVLEGIF 248 >gi|317492420|ref|ZP_07950849.1| flagellar biosynthetic protein FliR [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919759|gb|EFV41089.1| flagellar biosynthetic protein FliR [Enterobacteriaceae bacterium 9_2_54FAA] Length = 261 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 106/241 (43%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F R+ + I P LS I + ++ AMA + +L+P L ++ Sbjct: 11 LWLGQYFWPFVRMLALISTAPLLSEKAISKKTKVGLAMAITFLLVPNLGSNPTPVVSISG 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV ++ +G GL ++ ++ G VI +GL+ T S L Sbjct: 71 LW---LVTQQILIGAALGLTMQFAFAAVRLAGEVIGLQMGLSFATFFDPSGGPNMPILAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ +L + H + L +S+ T+PI ++ GN F F+ L L+ Sbjct: 128 LLNLLTMLLFLSFNGHLWMISLLAESFQTLPISEQPLNGNGFLMLAQAGSLIFVNGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N ++GLLN++ PQ+ I+ + P + +G L L + ++V H F Sbjct: 188 LPLITLLLALNTALGLLNRMTPQLSIFVVGFPLTLTIGMFSLSLMMPMLVPFSEHLFSEV 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|312884813|ref|ZP_07744505.1| putative flagellar biosynthetic protein FliR [Vibrio caribbenthicus ATCC BAA-2122] gi|309367465|gb|EFP95025.1| putative flagellar biosynthetic protein FliR [Vibrio caribbenthicus ATCC BAA-2122] Length = 258 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 103/239 (43%), Gaps = 3/239 (1%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 ++ L+ R+G+ ++ +P S IP+ VR FA+A +V + + Sbjct: 7 DLSQMLGQLWWPFFRIGTALISMPFFGDSLIPVWVRSLFALAIVVVSASLMPAMPKVDLI 66 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 A L + ++ G GL++ G ++S +GL + + L+ Sbjct: 67 SFSA--IALALEQVLWGLFFGLILHFLFAVFTTLGQIVSMQMGLGMAIMNDPVNGLSVPI 124 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 L L I L ++ H + LV+S+ P+G L ++ V+++ F + Sbjct: 125 LGRLFLIFCTLLFLSLEGHLIIIDVLVQSFVIWPVGSGL-SALSLTNLVHLMTWMFASSV 183 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 L+ P + ++ NIS G++N+ P + +Y + P + LG + +SI + +++ Sbjct: 184 ALALPAIIAMLLANISFGVMNRAAPALNVYALGFPMTMLLGLFSILISISGVPDKYAEL 242 >gi|292489150|ref|YP_003532037.1| flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430] gi|292900268|ref|YP_003539637.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291200116|emb|CBJ47242.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291554584|emb|CBA22215.1| Flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430] gi|312173308|emb|CBX81563.1| Flagellar biosynthetic protein FliR [Erwinia amylovora ATCC BAA-2158] Length = 259 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 96/231 (41%), Gaps = 4/231 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL++ R+ + + + P S + +VR+ A+ +++L + D + Sbjct: 17 YFLVMVRIAALLTVAPVFSEKGVNTRVRVGLALLIAVLL---GGNIPDSHIALYSFQGVW 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 V +L +G GL +++ + ++ G ++ +GL+ T ++ + + ++ Sbjct: 74 AVGKQLLIGAALGLSMQLLFVAVRMAGEIVGMQMGLSFATFFDP-NAGNVPVIARFLNLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L V + H + L +S+ +P+ F V F L L P + Sbjct: 133 VTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGFFLLVQQAGLVFREGLMLGLPIIS 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + N ++GLLN+L PQ+ I+ I P + +G + L L + + Sbjct: 193 LLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSLISQTLAPFIEKL 243 >gi|257871303|ref|ZP_05650956.1| flagellar biosynthetic protein fliR [Enterococcus gallinarum EG2] gi|257805467|gb|EEV34289.1| flagellar biosynthetic protein fliR [Enterococcus gallinarum EG2] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 105/229 (45%), Gaps = 4/229 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + LI CR+ + ++L P S P ++ MA +++ LP +L F+ Sbjct: 4 IQATVLIFCRILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPAIPELSLFM---- 59 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + V+ E+ G G L ++ G++ G +I +G ++ + + +A + Sbjct: 60 MTVFVIKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTY 119 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + + +D HH++ AL+ S+ +P+G + G V + ++ + L++P Sbjct: 120 YWLTIAVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAP 179 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + ++ ++ +G++++ +PQI I +S + + L + ++ Sbjct: 180 MIIALLLVDLVLGVISRSIPQINILMMSLSMKTAISFVVFLLLLPNVLS 228 >gi|103488401|ref|YP_617962.1| flagellar biosynthetic protein FliR [Sphingopyxis alaskensis RB2256] gi|98978478|gb|ABF54629.1| flagellar biosynthetic protein FliR [Sphingopyxis alaskensis RB2256] Length = 259 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 93/242 (38%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ L + R G+ + P + +P+Q+RL A+A + + + + V+ Sbjct: 10 EAMLQLWMLGMIRPGAAFIAAPVFGAANVPVQLRLVIALAVGVPAVAASGMVLPAEGIVS 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ E+ +G G ++++ G VIS A+GL + + + + + Sbjct: 70 VPG-IFFIVGEVVIGLAIGFVLQMGLAAALLAGEVISNAMGLGFASMVDPLSGASSSAIG 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ D H + +V SY +P G + + F L + Sbjct: 129 QFLAMLATALFLAADGHLLLIDIVVDSYTALPPGNAFPSWDALGGVIRFGSLMFAAALTI 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F I+ I +G++ + P + ++ + P + G + L ++ + Sbjct: 189 ALPVGFVLILVQIIMGVIGRSAPALNLFAVGIPATLLAGIVLLGVATPAMAEAIIRILSD 248 Query: 246 GF 247 Sbjct: 249 AL 250 >gi|32266203|ref|NP_860235.1| flagellar biosynthesis protein FliR [Helicobacter hepaticus ATCC 51449] gi|32262253|gb|AAP77301.1| flagellar biosynthetic protein FliR [Helicobacter hepaticus ATCC 51449] Length = 258 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 3/240 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L++ R G P I + +R S+ P T+ V Sbjct: 13 VAVFLLLIARFGGVFAFFPFFDNQLISIHIRAAMVFFMSVAFFPLATYTLPDMTMVE--- 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + E+ LG + + +++ L F G +IS +G + ++ + + LI Sbjct: 70 FLIAALFEIMLGFIASVCLQIVFAMLSFGGEIISFTMGFTMASAYDPVSGTQKPIIAQLI 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 IIGLL +DFHH +F + S P+G + + FV F + ++ P Sbjct: 130 AIIGLLVALSLDFHHTIFLIISHSIEATPLGGFVFEPKSAAYFVKAFSNIFAVGFSMAFP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 L ++ +I G++ K PQ + I P I + + L L+I I+Y F + FF Sbjct: 190 ILAIILLSDIIFGMIMKTHPQFNLLVIGFPVKIAIAFVVLVLTISTIMYTFKNELKNAFF 249 >gi|85706161|ref|ZP_01037256.1| flagellar biosynthetic protein FliR [Roseovarius sp. 217] gi|85669325|gb|EAQ24191.1| flagellar biosynthetic protein FliR [Roseovarius sp. 217] Length = 254 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 113/238 (47%), Gaps = 5/238 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ L+ RV I LLPG +PM++++ AF+++ P + + Sbjct: 12 QEVLWLHALVFLRVAPIIGLLPGFGEQSVPMRIKVVLVFAFTLIAAPAIAPDLPDHVHAP 71 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A ++ E +G + G+ +R++ + LQ GS+ + + L+ +G + + Sbjct: 72 SALT---ILSETLVGLIIGIGLRLFLMALQMAGSIAAQSTSLS--QILGNASLTPMPSIG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ G+ + ++D H +V ++ SY P+ I V+ + F + L Sbjct: 127 HLLATGGVALMMIMDLHVRVAELMILSYRVFPVQGVFKVSAITQWGVSQIAHAFSLGFML 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++PF+ +++N+++G++N+ +PQ+ + F+ P + L L L ++ ++ +F Sbjct: 187 AAPFVLVSVLYNLTLGVINRAMPQMMVAFVGAPAITALALFVLMLVAPALLMAWAQAF 244 >gi|238785489|ref|ZP_04629472.1| Flagellar biosynthetic protein fliR [Yersinia bercovieri ATCC 43970] gi|238713591|gb|EEQ05620.1| Flagellar biosynthetic protein fliR [Yersinia bercovieri ATCC 43970] Length = 260 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ F + RV + I P LS I +V++ A+ + ++ P L Sbjct: 12 MVSHYFWPLIRVLALITTAPVLSERQINRKVKVGLAVLITFLIAPALPPVNIPLVSSGAL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G GL ++ ++ G VI +GL+ T S + L+ L Sbjct: 72 WVA---AQQILIGVTIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNTSVLSRL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + H + L S+ T+PI E G+ F + FM L L+ Sbjct: 129 LNLLAMLLFLSFNGHLWLISLLADSFHTLPIQFEPLNGSGFLTLAQTGSLIFMNGLMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++G+LN++ PQ+ ++ I P + +G L L L + ++ H F F Sbjct: 189 PLITLLLTLNLALGMLNRMTPQLSVFVIGFPLTLTVGILSLGLIMPLLAPFAEHLFSEFF 248 >gi|256833223|ref|YP_003161950.1| flagellar biosynthetic protein FliR [Jonesia denitrificans DSM 20603] gi|256686754|gb|ACV09647.1| flagellar biosynthetic protein FliR [Jonesia denitrificans DSM 20603] Length = 253 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 96/230 (41%), Gaps = 3/230 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ L+ R + ++ P S P V++ A+ ++ + P + + QNF Y Sbjct: 12 TVMLVSVRFIAFFVIAPPFSARSFPATVKMMLALGMALAVAPTITPAVPAQNF---GTYM 68 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + +++ +G G ++ + ++ G +I G + + + + L + Sbjct: 69 LALGLQVVIGASLGFIVYLVFAAVESAGGMIDMTGGFAMAQGFDPLNQVNGAQMYRLFQM 128 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L L+ + HH + ++S+ P+ +N + S L F+ ++++ P + Sbjct: 129 TALALLFASNGHHLIVGGFIRSFEFAPLAGGINMDRMGQSVATGLTDLFLAAIQIAGPLI 188 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 ++ ++ +GLL+++ P + ++ +S P I L + + Sbjct: 189 VVLVLADVGMGLLSRVAPALNVFVLSFPLKIFLTITLVSVVYLTFPRIIE 238 >gi|256020207|ref|ZP_05434072.1| flagellar biosynthetic protein FliR [Shigella sp. D9] gi|332281369|ref|ZP_08393782.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|332103721|gb|EGJ07067.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 260 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPVPHDLISL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYVILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|167040312|ref|YP_001663297.1| flagellar biosynthesis protein FliR [Thermoanaerobacter sp. X514] gi|300914396|ref|ZP_07131712.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X561] gi|307724368|ref|YP_003904119.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X513] gi|166854552|gb|ABY92961.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X514] gi|300889331|gb|EFK84477.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X561] gi|307581429|gb|ADN54828.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X513] Length = 260 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+ +L P +P +++ ++++ + N Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTILKIGLGFFAAVIVFDTMGPV--DLQINNVLD 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y +V+ E +G V GL + + G +I +G L + I + + I Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L +++ H+ +F L KS I IG+ +F + M+ F++ R+S Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIAIGKVAFDFSGMSQVLTKMVSDMFLLGFRISV 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPVYLTIIDFLF 244 >gi|238799424|ref|ZP_04642853.1| Flagellar biosynthetic protein fliR [Yersinia mollaretii ATCC 43969] gi|238716728|gb|EEQ08615.1| Flagellar biosynthetic protein fliR [Yersinia mollaretii ATCC 43969] Length = 260 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ F + RV + I P LS I +V++ A+ + ++ P L Sbjct: 11 ALVSQYFWPLIRVLALITTAPVLSEKQINRKVKVGLAVLITFLIAPALPPVNIPLVSSGA 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + ++ +G GL ++ ++ G VI +GL+ T S + L+ Sbjct: 71 LWVA---AQQILIGVTIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNTSVLSR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ +L + H + L S+ T+PI E G F + FM L L+ Sbjct: 128 LLNLLAMLLFLTFNGHLWLISLLADSFHTLPIQFEPLNGGGFLTLAQTGSLIFMNGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+++G+LN++ PQ+ ++ I P + +G L L L + ++ H F Sbjct: 188 LPLITLLLTLNLALGMLNRMTPQLSVFVIGFPLTLTVGILSLGLIMPLLAPFAEHLFSEF 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|254255043|ref|ZP_04948360.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa AUO158] gi|124899688|gb|EAY71531.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa AUO158] Length = 287 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 90/217 (41%), Gaps = 2/217 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I ++ CR+ + + P L + IPM+ R A+ + + P + + A Sbjct: 35 IAAAIIWPFCRIAAALAAAPILGDAMIPMRARALAALVLAFTVQPGIPAGPSIDPLSLAA 94 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ ++ +G + G + L GS++S+ IGL++ + L+++ Sbjct: 95 --VAVIGEQVAIGGLLGFAFHLVLSALLAFGSIVSSQIGLSMAQMNDPMNGQPSDVLSNV 152 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + +D H + L +S+ PIG + F + F L+ Sbjct: 153 MYVLFILLFFAVDGHLLMTQVLARSFDVWPIGGSAFDFSALRRFALAVGWMFSAAAALAL 212 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 P F +V + +GLLN+ P + ++ + G Sbjct: 213 PVTFATLVVQVGLGLLNRAAPTLNLFSLGFSVTTMFG 249 >gi|94264044|ref|ZP_01287844.1| Type III secretion system inner membrane R protein [delta proteobacterium MLMS-1] gi|94266370|ref|ZP_01290069.1| Type III secretion system inner membrane R protein [delta proteobacterium MLMS-1] gi|93453022|gb|EAT03510.1| Type III secretion system inner membrane R protein [delta proteobacterium MLMS-1] gi|93455555|gb|EAT05742.1| Type III secretion system inner membrane R protein [delta proteobacterium MLMS-1] Length = 263 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 2/238 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +M + +I+ RVG + L+P + +P QV++ + S+VL P + Sbjct: 14 LMRVVMIMVRVGPLLFLMPVIGAPNVPTQVKILLVLMTSLVLAPMV-PVSAADLPDTALG 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ V++E+ + L +R ++ G V+ +G+ + M +P+ L Sbjct: 73 FAHFVILEIVFVAILALFVRFVFAAVETAGQVVGVQMGMGMAGVMDPVFGNQISPVGMLW 132 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRLSS 187 I +L ID HH F A+V+ Y + GQ + + + F++ + + + Sbjct: 133 NIAAILLFLAIDGHHLFFAAMVQGYQWVGPGQLAAVSQLTYEGMMEGASQMFVLAIMIMA 192 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P ++ +G++ K VPQIPI + P I +G +F L++ + F Sbjct: 193 PVSVALFFSHVGMGVIAKTVPQIPILIVGMPMNIAIGIVFAGLAMGYLAPLLIARFEM 250 >gi|146277692|ref|YP_001167851.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC 17025] gi|145555933|gb|ABP70546.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC 17025] Length = 266 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 97/236 (41%), Gaps = 2/236 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + SLF R+G+ ++ P ++P+ VR+ + ++ +L + + Sbjct: 14 GSLTSLFFATLRIGAFLLASPAFGGRFVPLPVRIMATVVLTLPVL--GRADLPGPEALAS 71 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++M E+ +G GL++ V G I+ GL + S + Sbjct: 72 LSAVPMMMQEIAIGLSAGLVLTVLFSAAALAGDRIAATAGLGFAAQIDPSAGGQTPVVAQ 131 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + G+ +D H F L++SY ++P G G + + F++ L++ Sbjct: 132 IFGLALTTVFLALDGHLSAFEILLRSYESLPPGAPFAPGPFLEAGIGAGGRMFLVGLQIM 191 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ NI+IG++ + PQ+ ++ P + + L L++ + FS Sbjct: 192 MPVVAALVLINITIGVITRSAPQLNVFSFGFPVTMSATLILLFLTVPGTMGAFSSL 247 >gi|192359985|ref|YP_001982206.1| flagellar biosynthetic protein FliR [Cellvibrio japonicus Ueda107] gi|190686150|gb|ACE83828.1| flagellar biosynthetic protein FliR [Cellvibrio japonicus Ueda107] Length = 261 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 91/235 (38%), Gaps = 2/235 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + R+G+ +P + +P ++RL + +L+P L + Sbjct: 18 YIWPMLRIGAFYFAVPVIGARTVPARIRLILMLLTVFLLVPVLPPAPVVSLLSLAGLM-- 75 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L+ E+ +G G ++V G I+ +GL S ++ T L+ ++ Sbjct: 76 LIAQEVLIGLALGFTMQVVLHVFVLAGQYIAMKMGLGFAAMNDPSSGVSVTVLSQFYLLL 135 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + H V ++ S+ PIG + + + V M F L ++ P Sbjct: 136 STLLFLSTNGHLVVLQLMIDSFRFFPIGGDGISTSAYMVIVQMGSWMFSAALLIALPLFT 195 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 ++ N+S G++++ PQ+ ++ + P + G + S+ + + G Sbjct: 196 SLMIVNMSFGVMSRAAPQMNVFTVGFPITLVFGLALMYFSLGNFLPLYMELMEEG 250 >gi|260564095|ref|ZP_05834580.1| LOW QUALITY PROTEIN: flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. 16M] gi|260151738|gb|EEW86831.1| LOW QUALITY PROTEIN: flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. 16M] Length = 221 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 105/195 (53%) Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL 107 VLL L + + +L++ E+F+G + G+L +Y LQF ++++ A+G Sbjct: 18 AVLLLVLQRIVTAVDAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGY 77 Query: 108 NLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167 + + I+++ + L +++ L +V D H ++F AL+ SY IP+ Sbjct: 78 SGSPADSITENEPQATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAA 137 Query: 168 FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLF 227 F + L F+ LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L Sbjct: 138 MIDFTDALSAAFLATLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLV 197 Query: 228 LCLSIEIIVYQFSHS 242 + + ++ F+H Sbjct: 198 VYFILPELLRFFTHE 212 >gi|114320140|ref|YP_741823.1| flagellar biosynthetic protein FliR [Alkalilimnicola ehrlichii MLHE-1] gi|114226534|gb|ABI56333.1| flagellar biosynthetic protein FliR [Alkalilimnicola ehrlichii MLHE-1] Length = 260 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 93/215 (43%), Gaps = 2/215 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + SL + RVG+ +M+ P +P++VR+ F +A ++ +LP + + + Sbjct: 10 AWVGSLMWPLMRVGAMVMVAPVFGNQLMPVRVRVFFGLALAVAVLPAVGEVPPVDPLSAE 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ +G + G ++ + + G ++ A+GL T + ++ L+ Sbjct: 70 GLLIS--VQQVLIGLIMGFMLLLAVNAVVVAGESMALAMGLGFATMVDPQTGMSVPVLSQ 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ +I L I H + S+ +PI E F F + ++ Sbjct: 128 VMLVIVTLVFLGIGGHLMLIELTAASFSALPIAAEGVGREAFFEVAAWASQMFAGAVLIA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 P + ++ N+++G++ + PQ+ ++ + P + Sbjct: 188 LPVVTVLLIINLALGVMTRAAPQMNVFSVGLPITM 222 >gi|258624669|ref|ZP_05719604.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM603] gi|262173374|ref|ZP_06041051.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451] gi|258583061|gb|EEW07875.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM603] gi|261890732|gb|EEY36719.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451] Length = 258 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 I+ L+ RVG+ + +P + IP+ VR A+A ++ P + + F Sbjct: 10 AILGQLWWPFFRVGAVFISMPFFGDALIPIWVRSLLALAIVVITAPLIPTMPAVDLFSMT 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + L ++ G + GL++ + G ++S +GL + + ++ L Sbjct: 70 SLF--LAFEQVIWGIIFGLILHMLFTVFAMLGQIVSLQMGLGMAMMNDPVNGISVAVLGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L I L ++ H V L++S+ P+G + +N F L L+ Sbjct: 128 LFLIFSTLLFLALEGHLLVIDVLIQSFVIWPVGSGI-TSLSLQGVINAFGWMFASSLALA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ NIS G++N+ P + IY + P + LG + +S+ I +++ Sbjct: 187 LPAIISMLLANISFGVMNRAAPSLNIYALGFPMTMLLGLFSVLISVSGIPDRYTDL 242 >gi|170021381|ref|YP_001726335.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739] gi|169756309|gb|ACA79008.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739] Length = 260 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLFKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|288958051|ref|YP_003448392.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288910359|dbj|BAI71848.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 256 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 1/239 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ RVG+ ++P + +++P + RL FA+A S ++ P + + N Sbjct: 12 IFVWMLVFLRVGTAFSVMPTIGDAFVPTRARLLFALAVSTLVAPTIRPMLPPMP-GNPFQ 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV E+ +G G + R+ L+ G++IS GL + + + + SL+ Sbjct: 71 LMVLVAGEMTVGIFLGTIARLLMGALEVAGTIISLQSGLANAQIFNPALASSGSLPGSLM 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 G +GLL L+ D HH + A+V SY T G + ++ + ++ +FM+ +++S+P Sbjct: 131 GWLGLLLLFATDLHHLLIMAVVDSYATFVPGAAIPVDDMANMVGQLVSKSFMMGVQMSAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 FL ++F +++GLLNKL PQ+ ++ + T + LG L++ ++ + F F Sbjct: 191 FLITGMLFALALGLLNKLAPQVQVFQLFTSVQVLLGLFMFALTLGAMMLFWLSRFESTF 249 >gi|290475716|ref|YP_003468605.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus bovienii SS-2004] gi|289175038|emb|CBJ81841.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus bovienii SS-2004] Length = 260 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 101/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ F + R+ + P S P++VR+ A+A + +L+P + Q V Sbjct: 12 LVSDFFWPLVRLLALFSTAPIFSEKQTPIKVRMSLALAITFLLVPNI---PSPQIPVFSV 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +++ ++ +G GL +++ ++ G ++ +GL+ T + L + Sbjct: 69 AGVWVMIQQVLIGVALGLTMQIAFAAIRHAGEILGLQMGLSFATFFDPTGGPNMPILARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L +D H + L ++ +IPI F F+ + L+ Sbjct: 129 LNLLMMLMFLALDGHLWLLSILAGTFDSIPIQPMQLNPKGFLLLAQSAHLIFINGMMLAM 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + +V N ++G+LN++ PQ+ ++ I P + +G L L ++ F Sbjct: 189 PLITLLLVLNFALGMLNRMTPQLSVFVIGFPLTLTVGIFTLSLLFPMLAPFTERLMAEIF 248 >gi|118474587|ref|YP_892577.1| flagellar biosynthesis protein FliR [Campylobacter fetus subsp. fetus 82-40] gi|118413813|gb|ABK82233.1| flagellar biosynthetic protein FliR [Campylobacter fetus subsp. fetus 82-40] Length = 257 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 104/236 (44%), Gaps = 1/236 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ FL++ R G+ ++ P + IP+ ++ + F+I L P + L+N + Y Sbjct: 12 VVTFFLLLVRTGALMVFFPFFNHMQIPVIIKAVLSFMFAIFLFPLAHAPVGLENL-SVEY 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 EL G G+L+ + LQ G IS +G ++ + + + +++++ Sbjct: 71 LILETFSELMFGMCAGVLLMLVFGALQLAGGQISMIMGFSMASVIDPQSGVNMPLISNML 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I LLA + D HH V + S IP+G NI + F+ +S P Sbjct: 131 NFIVLLAFLLFDGHHIVLQFIAYSLQFIPLGGFYPDENIVKYTAKGVINLFLFGFIISFP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L ++ ++ G+L K +PQ + + P I + + + I +V F+ + Sbjct: 191 ILALSLLADLIFGMLMKTMPQFNLLVVGFPIKIAIAFVVIMAIISAMVKLFTSLMM 246 >gi|188494213|ref|ZP_03001483.1| flagellar biosynthetic protein FliR [Escherichia coli 53638] gi|188489412|gb|EDU64515.1| flagellar biosynthetic protein FliR [Escherichia coli 53638] Length = 260 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLVLQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243 >gi|78777992|ref|YP_394307.1| flagellar biosynthesis protein FliR [Sulfurimonas denitrificans DSM 1251] gi|78498532|gb|ABB45072.1| Flagellar biosynthesis protein FliR [Sulfurimonas denitrificans DSM 1251] Length = 254 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 105/243 (43%), Gaps = 3/243 (1%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + ++ L+ R + + +P S + IP+ ++ A F+IV L + Sbjct: 8 SDTYIVGFILLFFRFAALFIAVPIFSHNNIPISIKTSLAFFFTIVFY---SSMPPLTMVI 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 ++ EL G G+++++ + F G IS +G ++ +++ ++ + Sbjct: 65 TVPSIVMAILSELLFGLAIGVILQIAFNAITFAGGQISFMMGFSMASAIDPQSGISMPII 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + + ++ L+ L+ ID HH + + S IP+G + N+F+ + + F++ Sbjct: 125 SQFLSLMALMMLFAIDMHHWILLFIDSSLQNIPLGGFVMSENLFTYIIKAMSNMFLVGFM 184 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ P ++ +I G+L K +PQ + I P I + L +I I+ + Sbjct: 185 IAFPITALGLLADIIFGMLMKTMPQFNLLVIGFPIKIMVSFAVLIATISAIMLIIKGQMV 244 Query: 245 YGF 247 F Sbjct: 245 EAF 247 >gi|221640819|ref|YP_002527081.1| Type III secretion system inner membrane R protein [Rhodobacter sphaeroides KD131] gi|221161600|gb|ACM02580.1| Type III secretion system inner membrane R protein [Rhodobacter sphaeroides KD131] Length = 260 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 112/211 (53%), Gaps = 7/211 (3%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 +FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P L D + + + Sbjct: 22 VFLVFLRVGAAMALLPPFGETSLPVRVRLAAALAFTAIVFPALSDRVPIYDGSLAP---- 77 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E +G + G +R++ L LQ G++ + A +L G + + + +++ + Sbjct: 78 -LLAETAVGLLLGASLRLFVLALQTAGTIAAQAT--SLAQLFGSTAGEPQPVMTNILTLA 134 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 GL V H Q+ L++SY +P + + ++ + + ++ +F + L+ PF+ Sbjct: 135 GLALAVVGGLHVQIALFLIQSYDILPAARLPDPADVATWGLTLVVKSFALGFMLAMPFVA 194 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIG 222 +FN+++G++N+ +PQ+ ++F+ P L Sbjct: 195 ASFIFNVALGIVNRAMPQLMVFFVGAPALTF 225 >gi|159045797|ref|YP_001534591.1| flagellar biosynthesis protein FliR [Dinoroseobacter shibae DFL 12] gi|157913557|gb|ABV94990.1| flagellar biosynthesis protein FliR [Dinoroseobacter shibae DFL 12] Length = 257 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 2/237 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L + R+G+ + LP +P++++L +A + ++LP L T A + Sbjct: 16 FILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLAT-GAPPLERPADWVL 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 E+ G G R+ LQ G++ + + L G + L ++ + Sbjct: 75 AGGAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFG-GAVTPDPQPALGNIFLMA 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 GL + H + A + S+ +P+G N I + + + F++ LS+PF+ Sbjct: 134 GLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVVGFTLSAPFVA 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 +++N+++G +N+ +PQ+ + F+ P L G LS+ ++ + + F F Sbjct: 194 AAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHWWYLFEASIF 250 >gi|254467056|ref|ZP_05080467.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium Y4I] gi|206687964|gb|EDZ48446.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium Y4I] Length = 259 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 116/234 (49%), Gaps = 5/234 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ RV + + +LP + Y+P +V+L A AF+ V+ P L + N Y++ Sbjct: 23 IVFLRVAAMVSVLPAMGELYVPARVKLAVAAAFTFVVAPALPAFPEPDNVFA---YARFA 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E +G G+ +R++ L LQ G++ + A L+ +G + L +++ I G+ Sbjct: 80 VTEAIIGLALGIGVRIFVLALQTAGAMAAQATSLS--QVLGGIGAEPMPALGAVLMISGV 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 ++ H +V L+ SY P G+ + V + +F + L++PF+ Sbjct: 138 TLATMMGLHVRVAELLIGSYRMFPAGEFPVAAGLTEWGVFRVSQSFSLAFTLAAPFVITA 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +++N+++G++N+ +PQ+ + + P + +G L + +I+ +S + + F Sbjct: 198 VIYNLALGVINRAMPQLMVAMVGAPVITLMGLFILMVGSPVILDVWSRALMTFF 251 >gi|42524692|ref|NP_970072.1| flagellar biosynthetic protein FliR [Bdellovibrio bacteriovorus HD100] gi|39576902|emb|CAE78131.1| flagellar biosynthetic protein FliR [Bdellovibrio bacteriovorus HD100] Length = 259 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 103/234 (44%), Gaps = 1/234 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ L++ R+ + ++ + V++ ++ S+VL P + ++ V Sbjct: 9 EAQILLFALVLLRMLAYVISSAVFGSPLVNTPVKILLSLVLSMVLYPVVK-VGNVDYLVI 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L + EL +G G L R++ + TG ++S ++GL+ + Sbjct: 68 SNEIIGLAVRELIVGLALGFLTRLFFFVVSMTGDLVSMSVGLSAAQLYNPMMGSQGGVIE 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + L I+ HH + A+ +SY +P+ F+ Q F++ +++ Sbjct: 128 QFYSAMATLVFLAINGHHMLISAIAQSYELVPVSSLALNFGPFAEIAVFGQVAFVMAIKM 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 +P L ++ N+++G+L + VPQI + S P I LG + + + +++ + Sbjct: 188 CAPVLVAILIVNLAMGILGRAVPQINVLVTSMPVTIMLGMAVVFICLPLLIMEM 241 >gi|163744324|ref|ZP_02151684.1| flagellar biosynthesis protein R [Oceanibulbus indolifex HEL-45] gi|161381142|gb|EDQ05551.1| flagellar biosynthesis protein R [Oceanibulbus indolifex HEL-45] Length = 251 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 3/237 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +M F++ R+GS ++ +PG + + +P + RL F + S L P + Sbjct: 11 LMGYFVVFARIGSALLFMPGFAETSVPTRHRLFFGLILSATLYPVTG--LGPVAEDRPGA 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + E+ +G GL+ R LQF G ++ GL + I T + +++ Sbjct: 69 LLLIFGSEITVGLWIGLVARTLLSALQFAGYQMALMSGLANALAPNIGAFEGATSMAAML 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I ++V D HH + +L+ SY G ++ F Q + + L +++P Sbjct: 129 LIGATALIFVTDLHHLIIESLLMSYQVFIPGT-FMLADLTDQFARATQVSLYLGLSIAAP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 F +V N+ +GL N+++ + ++FI+ P LI G + L++ ++ F F Sbjct: 188 FYVAGLVLNVGMGLANRMMASLQVFFIAQPLLIAAGLALMVLAVPTMMRGFLEPFAE 244 >gi|289208349|ref|YP_003460415.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. K90mix] gi|288943980|gb|ADC71679.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. K90mix] Length = 253 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 105/241 (43%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + ++ R+G+ ++++P + VR+ FA+ +I + + Sbjct: 6 VWVGAVMWPFARIGAMLLVMPVFGGDQLTATVRILFALVLAIFVAMQGPALPAVDPISIE 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ +G V G ++++ L G VI+ ++GL + + + + +++ Sbjct: 66 GVVVT--VHQILIGLVMGFILQMVFSALTQAGEVIALSMGLGFASIVDPAQGVQVPVVST 123 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+ L ++ H L+ S+ T+P+ +S + F + ++ Sbjct: 124 IFVIMATLIFLAMNGHLIALELLLTSFETLPVAPSGLDAEALASLIAFGSVMFQGAVLVA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N+S+G++ + PQ+ I+ + P +I +G + L L++ + + G Sbjct: 184 IPAVASLLLVNLSMGVITRASPQLNIFAVGFPMMILMGFILLMLTMPGLPERLGDLLFDG 243 Query: 247 F 247 F Sbjct: 244 F 244 >gi|306820133|ref|ZP_07453781.1| flagellar biosynthetic protein FliR [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551911|gb|EFM39854.1| flagellar biosynthetic protein FliR [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 260 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 3/233 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ RV +++ P S + IP +++ M S V+LPF+ ++ V+ + + Sbjct: 16 YMLILSRVLGIVIIAPMFSRNNIPAMLKVGLGMILSYVILPFVVPNTNID--VSSSEFIF 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ ELF G GL + + G+ IGL++ S T L + Sbjct: 74 LVVKELFTGFCIGLCMALIFNIFMAAGANADINIGLSMSQIFDSSIGGNTTISGQLFNVF 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L +D HH + A+V S+ +PI + + + + L P + Sbjct: 134 AFLLFLSLDIHHLMIRAIVNSFEILPINTIDFYKEGFLDFLIRLNAYILVSSILLVVPII 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + NI + + K++PQ+ ++ + P+ I +G + LS+ ++ F Sbjct: 194 ITLFLGNILLAFMAKVMPQMNVFIVGMPFKIIVGFVIFYLSLPMVKNVVIEIF 246 >gi|328958268|ref|YP_004375654.1| flagellar biosynthesis protein FliR [Carnobacterium sp. 17-4] gi|328674592|gb|AEB30638.1| flagellar biosynthesis protein FliR [Carnobacterium sp. 17-4] Length = 230 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 92/212 (43%), Gaps = 3/212 (1%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 + PG S+ +P ++ +M ++ + ++ L++ E+ LG G Sbjct: 1 MSPGFSIKGLPSVAKIALSMGITLAAYSAVPVMGQ---EAGTFLFAILILKEVLLGIAIG 57 Query: 85 LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQ 144 + +++ ++ G+ + +G ++ S + + + + + ++ + HH Sbjct: 58 FITKLFFSAVEIAGNFVDFQVGFSMGAVYDPSMGINVSYYGKIYYWLSMCVFYLTNLHHV 117 Query: 145 VFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLN 204 V +L++S+ T+PI + +L F + LS+P + ++ + +GL++ Sbjct: 118 VIKSLIQSFQTMPISSTNIGDFGVEGMMKLLGIIFELAFNLSAPMVIVALLTEVILGLIS 177 Query: 205 KLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + VPQI + + P I + + + + +V Sbjct: 178 RSVPQINVLILGMPLKIVASFVIMLILLPTLV 209 >gi|330447935|ref|ZP_08311583.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492126|dbj|GAA06080.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 258 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 100/236 (42%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ + R+G+ ++ +P + IP+ VR A+A S + P + Sbjct: 10 ALLAQFWWPFFRIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTDLLSLN 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L + G + GL++ + G +IS +GL + + ++ L Sbjct: 70 AL--TLAFEQAIWGILFGLILHFLFSIMTLLGQIISLQMGLGMAMMNDPVNGVSIAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + L +D H V LV+S+ + P+G L ++ + + F L ++ Sbjct: 128 MFLLFSTLLFLALDGHLLVIDILVQSFTSWPVGSGLALSSV-KQILTLFGWMFSSALAIA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPTRYAEL 242 >gi|154175030|ref|YP_001407663.1| flagellar biosynthesis protein FliR [Campylobacter curvus 525.92] gi|112803591|gb|EAU00935.1| flagellar biosynthetic protein FliR [Campylobacter curvus 525.92] Length = 253 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 5/235 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ L+ R+ I+ P S + IP+ R IV P NF Sbjct: 13 ITFMLLFARLSGLIVFFPFYSYNQIPLTARTLLVFMLCIVFFPMSHAHEHAINF-----L 67 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E LG GL++ + LQ G IS +G ++ T + + + ++I Sbjct: 68 FVEILSEAMLGLCAGLMLTIVFATLQMAGEQISMVMGFSMATVLDPQTGASSPVIANMIN 127 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + LL + D HH + S +P+G + S + + FM LS P Sbjct: 128 FLALLTFLMFDGHHLLLQFYAASLAHVPLGDFYPSAGVMSYALKIFANLFMFGFILSFPI 187 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + ++ + G+L K +PQ + + P I +G L + ++ L Sbjct: 188 IALSLLSDSIFGMLMKTMPQFNLLVVGYPIKITIGFAVLIAILAGMMKIVGDMLL 242 >gi|332701285|ref|ZP_08421373.1| flagellar biosynthetic protein FliR [Desulfovibrio africanus str. Walvis Bay] gi|332551434|gb|EGJ48478.1| flagellar biosynthetic protein FliR [Desulfovibrio africanus str. Walvis Bay] Length = 263 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 1/229 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +S L + R+ + ++P P+ ++ + +I L P L Q N Sbjct: 11 FLSFLLTLMRISLVLFIMPFFGGKVTPVPLKAALCLILTIALWPTL-SFPGQQLPANTWA 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 +++ E+ LG V G+++ V +Q GS+I +G ++ E+ + Sbjct: 70 IVVMLIGEITLGLVMGIVVNVLFAAVQTGGSLIGFQMGFSMVNVADPMTGTNESITGHFM 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + ++D H + AL +S+ IP G + + M F++ +++++P Sbjct: 130 YMVTFMTFLILDGHLLLLRALAESFQRIPPGGLYLSPALAREVLGMSSQIFVLGIKIAAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + + +++I L+ + PQ+ I P I G LFL L I+ Sbjct: 190 VMVAVFLVDLAIALVGRAAPQMSILSFGFPLKIITGFLFLGLMFTIMAR 238 >gi|268679050|ref|YP_003303481.1| flagellar biosynthetic protein FliR [Sulfurospirillum deleyianum DSM 6946] gi|268617081|gb|ACZ11446.1| flagellar biosynthetic protein FliR [Sulfurospirillum deleyianum DSM 6946] Length = 257 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 3/241 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ FL+ R+ P S + IP+ ++ + L P L +N Sbjct: 10 EHHVILFFLLFARLSGVFAFFPFFSHANIPLSIKTSITFFMVVFLFPLLSPLHVTPTLLN 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + ++ EL +G + GL + + LQ G IS +G + + + S + L+ Sbjct: 70 ---LTLAIVSELLIGFIAGLFLTIALSILQMAGMQISFVMGFTMASVVDPQTSTSIPVLS 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + +IGL+ + + HHQ+ +V S +P+G ++ + F+ L Sbjct: 127 QIFSLIGLMIVLAFNGHHQMLLFIVDSLSLLPLGTFYPEMSVVGYILKATTGMFVYGFIL 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P L F ++ ++ G+L K +PQ + + P I + + + +++ + F F+ Sbjct: 187 SFPVLAFSLLMDVVFGMLMKTMPQFNLLVVGFPIRIAVSLVVIIVTLASTMLLFKREFME 246 Query: 246 G 246 Sbjct: 247 A 247 >gi|256750758|ref|ZP_05491643.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus CCSD1] gi|256750341|gb|EEU63360.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus CCSD1] Length = 260 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 100/236 (42%), Gaps = 3/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+ R+ +L P +P ++ ++++ + N Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTIFKIGLGFFAAVIVFDTMGPV--DLQINNVLD 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y +V+ E +G V GL + + G +I +G L + I + + I Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIYLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ +L +++ H+ +F L KS I IG+ +F + M+ F++ R+S Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIAIGKVAFDFSGMSQVLTKMVSDMFLLGFRISV 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPVYLTIIDFMF 244 >gi|84502406|ref|ZP_01000542.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597] gi|84389218|gb|EAQ02015.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597] Length = 250 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 4/237 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ L+ R+G+ +M LPG S++ ++ RL A+ S+V+ P + + + Sbjct: 11 FLATALVFGRIGAAMMFLPGFGESFVFVRHRLAAAVLLSLVITPLVAQGPVPSSPTD--- 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + VE+ LG GL RV +Q G+ I GL+ + I T + + + Sbjct: 68 LVRAMAVEVTLGIWIGLAARVLLTAMQVAGAQIGMVSGLSNAFAPDIGSFQGSTLIATAL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + ++ D HH + AL++SY T P G L G++ QT I L +++P Sbjct: 128 LLGAVAVIFAADIHHLIIEALIESYFTFPPG-LLMPGDLAEQMAMAAQTALHIGLSVAAP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 F +V N+ +GL N+++P +P++F++ P LI G L L++ + F F+ Sbjct: 187 FYVMGVVLNVGLGLTNRMLPSLPVFFVAAPVLIAAGLFVLVLAVPTAIRTFMTRFVE 243 >gi|258592486|emb|CBE68795.1| putative Flagellar biosynthetic protein fliR [NC10 bacterium 'Dutch sediment'] Length = 266 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 96/211 (45%), Gaps = 2/211 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R+G + P + S++P+ ++ A++ ++ L P L + L + + Sbjct: 14 FLLILFRLGGLFLTAPIFAGSHLPIPFKIGLALSLTVSLYPLLGKSALLARGMEPFSLAL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E+ +G V GL R+ +G+ G + +GL + + + + + ++ Sbjct: 74 SIVGEVAVGVVIGLAARLLFVGVSLAGELAGVQMGLGIANVVDPQFPQQASIVAQFLELM 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L + HH A+ S+ +IP+G S V + + ++ LRLSSP Sbjct: 134 TILTFLTLHGHHAFLEAVWASFESIPLGTFSGAAAAGAASVLVALFGKSLVLALRLSSPI 193 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 + ++ N+++GLL ++ PQ+ + Sbjct: 194 MVAVLITNVAMGLLARVAPQLNFFAFGLSVT 224 >gi|68164508|gb|AAY87237.1| predicted flagellar biosynthetic protein [uncultured bacterium BAC17H8] Length = 270 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 100/229 (43%), Gaps = 2/229 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ FL R+G+ ++ P ++P++VR+ A + ++ + D + + Sbjct: 19 GVLLQYFLASLRIGAFLLSAPIFGARWLPLKVRIIMAFTLAAAIVGDVPDVG--TDLLTS 76 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ +E+ +G GL + ++ + G I+++ GL + + ++ Sbjct: 77 SVGVSMMFIEIAIGLTAGLTLTIWFAAVLLAGEKIASSAGLGYAAQVDPATGGQTPVVSQ 136 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ + L+ ID H +++SY +P+G + + +S + + F+ + Sbjct: 137 ILYLFLLVIFLSIDGHLLAIGTMLESYRILPVGASVAPEVLIASGITAAGSMFLAATIIM 196 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P ++ N++IG++ + PQ+ ++ P + L L S Sbjct: 197 LPITTVLLMINVAIGIITRSAPQLNLFSFGFPISLLAVFLLLFFSAGAF 245 >gi|149908780|ref|ZP_01897440.1| putative flagellar biosynthetic protein FliR [Moritella sp. PE36] gi|149808054|gb|EDM67995.1| putative flagellar biosynthetic protein FliR [Moritella sp. PE36] Length = 260 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 3/235 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +I+ ++ R+ S + LLP + I VR+ FA+ +I++ P + ++ F Sbjct: 11 LIIGKIWWPFFRIISALWLLPIFGDTRITPSVRILFALTLAILISPVVPVVDNINPFSLG 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L + ++ G GL + + ++ G ++S +GL++ S + + Sbjct: 71 S--IILALEQILFGLFFGLSLTMLFTMMKLIGEILSMQMGLSMAVMNDPSSGGSSHVNSH 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ I L + H V LV+S+ T PIG + NI + ++ FM L L+ Sbjct: 129 LLTIFATLLFLSFNGHLIVLDILVESFVTWPIGSSIYLLNI-DIILKLVSWMFMAALMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ NI+ G++N+ P + +Y + P + LG + L L +I +F Sbjct: 188 MPAIVAMLLVNITFGVMNRSAPSLNVYSLGFPMGMLLGIICLGLVFRVIPNRFFD 242 >gi|323178516|gb|EFZ64094.1| flagellar biosynthetic protein FliR [Escherichia coli 1180] Length = 251 Score = 128 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + + + Sbjct: 3 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIP--HPVPHDLISL 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 61 NSLILTMEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I + +L + +D H + L K + PIG L+ + L+ Sbjct: 121 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQT-LRTIALAFSWVLASASLLAL 179 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 180 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 234 >gi|146294568|ref|YP_001184992.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32] gi|145566258|gb|ABP77193.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32] Length = 259 Score = 128 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 106/236 (44%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + CR+ M++P L +Y+P+ VR+ A++ + +L P L + + + Sbjct: 16 FWWPFCRIMGAFMIMPLLGNAYVPVMVRIFLALSIAALLAPMLPPVPPVDAISLASLF-- 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L + +L +G + L + + + G+++S +GL + ++ + ++ I Sbjct: 74 LAIEQLLIGFMLALFLTLLIHVMTMLGNIMSMQMGLAMAVMNDPANGDSSPIISEWFQIF 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G L ++ H +V S+ PIG + F V+ L F L L+ P + Sbjct: 134 GTLIFLALNGHLVAINIIVDSFRLWPIGHGI-FELPLMGLVSRLAWLFAASLMLAIPAVL 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ NI+ G+L++ P + I+ + P + +G L + LS+ I ++S L Sbjct: 193 AMLMVNITFGVLSRSAPSLNIFSLGFPMTMLMGLLCVFLSLSGIPSRYSDLCLDAL 248 >gi|262273549|ref|ZP_06051363.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886] gi|262222527|gb|EEY73838.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886] Length = 256 Score = 128 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 97/235 (41%), Gaps = 3/235 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ R+G+ + ++P IP+QVR+ + + P + +++ + Sbjct: 11 AWFGQIWWPFLRIGAFLTMMPIFGGMNIPVQVRIGLTWLIAAIAAPLMPPMPEVEPLSLQ 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + L E+ +G + ++ + G ++ST +GL + + ++ + Sbjct: 71 A--ALLSAKEILIGGIMAFVLELLFSVFMTLGQILSTQMGLGMAMMNDPVNGVSIASIGK 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + +L +D H +V S+ +G+ + L LS Sbjct: 129 FYQLFAILLFLALDGHLIALEVIVTSFDIWQVGET-MSQMALKTVFMQFSWMIGAALLLS 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ NI+ G++N+ PQ+ ++ + P + LG L L++ I + F++ Sbjct: 188 LPAMIAMLLVNIAFGVMNRAAPQLNVFALGFPMTLLLGLACLFLTMSGIPHNFAN 242 >gi|87307410|ref|ZP_01089555.1| probable flagellar biosynthetic protein fliR [Blastopirellula marina DSM 3645] gi|87290150|gb|EAQ82039.1| probable flagellar biosynthetic protein fliR [Blastopirellula marina DSM 3645] Length = 267 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 104/236 (44%), Gaps = 1/236 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + ++ RV + P +Y P +V+ A+ S+++ W + Sbjct: 14 LFIFVTVLTRVSGMLATAPMFGSNYAPAKVKAFLAVTISMMITGLFWGE-KFPQPDHWMS 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y ++ ELF+G GL +R+ G+Q TG ++ GL++ + + + L L Sbjct: 73 YLVVLGGELFIGISFGLGVRILFAGVQITGQMLGQIGGLSVADAFNPAFDESVPMLAVLF 132 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + + + H + AL+ ++ +P G L + V+ L +FM+ ++ ++P Sbjct: 133 DMVVVAMFFCLGGHRFMIGALLSTFADVPPGVGLASPEVVHVLVSTLSISFMLGVQAAAP 192 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + +GL+++ +PQ+ + + L +F+ LS+ + + F Sbjct: 193 GTVALLIGVLVMGLISRTLPQLNLIAVGFSLNTMLLMIFVFLSVGSMGWLFQDQLE 248 >gi|258622508|ref|ZP_05717530.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM573] gi|258585208|gb|EEW09935.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM573] Length = 258 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 I+ L+ RVG+ + +P + IP+ VR A+A ++ P + + F Sbjct: 10 AILGQLWWPFFRVGAVFISMPFFGDALIPIWVRSLLALAIVVITAPLIPTMPAVDLFSMT 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + L ++ G + GL++ + G ++S +GL + + ++ L Sbjct: 70 SLF--LAFEQVIWGIIFGLILHMLFTVFAMLGQIVSLQMGLGMAMMNDPVNGISVAVLGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L I L ++ H V L++S+ P+G + +N F L L+ Sbjct: 128 LFLIFSTLLFLALEGHLLVIDVLIQSFVIWPVGSGI-TSLSLQGVINAFGWMFASSLALA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ NIS G++N+ P + IY + P + LG + +S+ I +++ Sbjct: 187 LPAIISMLLANISFGVMNRAAPSLNIYALGFPMTMLLGLFSVLISVSGIPDRYTDL 242 >gi|291558214|emb|CBL35331.1| Flagellar biosynthesis pathway, component FliR [Eubacterium siraeum V10Sc8a] Length = 262 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 97/236 (41%), Gaps = 2/236 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + LI+CRV P S S P+++R +A +++ + D + Sbjct: 14 FLGFLLIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGDIKYEPTGIFMML 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + +M EL LG + G ++ + G +I GL++ +M + ++ ++ Sbjct: 74 FD--MMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVSMPLFANVY 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L ++ + H SY T+PIG ++ + V T + ++L++P Sbjct: 132 YYMFILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLTLAVKLAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + I +G+L K VP I I+ ++ + +G + + + + Sbjct: 192 IIAIEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLIMAQPMSDFIEKLMD 247 >gi|89072286|ref|ZP_01158865.1| putative flagellar biosynthetic protein FliR [Photobacterium sp. SKA34] gi|89051818|gb|EAR57270.1| putative flagellar biosynthetic protein FliR [Photobacterium sp. SKA34] Length = 258 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 100/236 (42%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ + R+G+ ++ +P + IP+ VR A+A S + P + + Sbjct: 10 ALLAQFWWPFFRIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTD--LLS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + G + GL+I + G +IS +GL + + ++ L Sbjct: 68 LSALMLAFEQAIWGVLFGLIIHFLFSIMTLLGQIISLQMGLGMAIMNDPVNGVSVAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + L +D H V LV+S+ + P+G L ++ + + F L ++ Sbjct: 128 MFLLFSTLLFLALDGHLLVIDILVQSFTSWPVGSGLALSSV-KQILTLFGWMFSSALAIA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPTRYAEL 242 >gi|294636882|ref|ZP_06715212.1| flagellar biosynthetic protein FliR [Edwardsiella tarda ATCC 23685] gi|291089912|gb|EFE22473.1| flagellar biosynthetic protein FliR [Edwardsiella tarda ATCC 23685] Length = 261 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 102/235 (43%), Gaps = 3/235 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ F R+ + P L IP +VR+ A + ++ P L T + Sbjct: 11 LLLGQFFWPFVRLLALYSTAPLLGEKAIPRKVRIALAALTAFLIAPQLPPTT---ITLAS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + ++ +GC GL +++ ++ G VI +GL+ T S L Sbjct: 68 GGALWLAIQQILIGCAIGLTMQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ LL + H + L S+ T+P+ GN F + F+ + L+ Sbjct: 128 LLNLLMLLLFLCFNGHLWIISLLADSFHTLPLSTAPLAGNGFLALAQSGHLIFLNGMMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + + N+++GLLN++ PQ+ I+ + P + +G L L + I ++ H Sbjct: 188 LPLITLLLTLNMALGLLNRMTPQLSIFVVGFPLTLTIGMLTLGMLIPMLAPFTEH 242 >gi|138894757|ref|YP_001125210.1| flagellar biosynthesis protein FliR [Geobacillus thermodenitrificans NG80-2] gi|134266270|gb|ABO66465.1| Flagellar biosynthetic protein [Geobacillus thermodenitrificans NG80-2] Length = 257 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 93/239 (38%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI R S +P S +P ++ A FS +L + Y Sbjct: 10 AFLLIFARTASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAV----PKPTLSLNDVYM 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV E+ +G GLL +Q G +I IG + + L + Sbjct: 66 LLVFKEVLVGLALGLLAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGQYLHS 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSP 188 + LL L +D HH + + SY +P+ + + V F++ +++++P Sbjct: 126 LALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIADGRAVDYAVRAFAAMFVVAVQMAAP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 F+ + ++++G++ + VPQ+ I+ + L L +I I++ F F Sbjct: 186 FVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELFQLMF 244 >gi|15835467|ref|NP_297226.1| type III secretion inner membrane protein SctT [Chlamydia muridarum Nigg] gi|270285647|ref|ZP_06195041.1| type III secretion inner membrane protein SctT [Chlamydia muridarum Nigg] gi|270289656|ref|ZP_06195958.1| type III secretion inner membrane protein SctT [Chlamydia muridarum Weiss] gi|301337043|ref|ZP_07225245.1| type III secretion inner membrane protein SctT [Chlamydia muridarum MopnTet14] gi|7190878|gb|AAF39649.1| type III secretion inner membrane protein SctT [Chlamydia muridarum Nigg] Length = 289 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 105/237 (44%), Gaps = 7/237 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ S + L+P L P +++ A ++ V+ P + + ++ + + Sbjct: 31 FLLLSARMLSILALVPFLGAKLFPSPIKIGIAFSWMGVIFPKVIQDTTIAHYQDLDIFYI 90 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGI 130 L++ E+ +G + G L Q GS I+ G+ L+ + + +P Sbjct: 91 LLIKEIVIGVLIGFLFSFPFYAAQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHY 150 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLR 184 + W++ H + L++S IPI I+ + + M Q ++ ++ Sbjct: 151 FVTIVFWLVGGHRIILSVLLQSLEVIPIHAVFPEEMMSLRAPIWIAILKMCQLCLIMTIQ 210 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LS+P ++ ++ +G++N++ PQ+ + ++ + LG LFL L+ IV Q + Sbjct: 211 LSAPAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFLGLLFLTLAWWFIVKQIDY 267 >gi|305431791|ref|ZP_07400958.1| flagellar biosynthetic protein FliR [Campylobacter coli JV20] gi|304444875|gb|EFM37521.1| flagellar biosynthetic protein FliR [Campylobacter coli JV20] Length = 255 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + L+ R+ I+ P S + IPM ++ FA+ ++ L P L+ ++ Sbjct: 12 VATFMLLFARMSGLIVFFPFFSHNSIPMIIKTTFALFLTMYLFPLA----KLEILHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + S + ++ Sbjct: 68 FIIQLLSEIVFGMIAGLMLQIVFAIVMMAGEQIAFTMGFTMASVLDPSSGTNMPITSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +I LL D HH + L S G I +G N+ + F+I +S P Sbjct: 128 HLIALLFFLAFDGHHLMLLFLSHSLGYINLGGFYPHENLMHYLNMGMLNIFIIGFTMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ + GLL K +PQ + I P I LG + L + +++ F L F Sbjct: 188 ILGISLLADTIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKDLILEVF 246 >gi|296282254|ref|ZP_06860252.1| flagellar biosynthetic protein FliR [Citromicrobium bathyomarinum JL354] Length = 261 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 96/237 (40%), Gaps = 1/237 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + ++ RVG+ ++ P S +P+ VR+ F A +I + +L + + Sbjct: 12 EADIWRVVFLMTRVGAALLAAPFFGASNVPVVVRISFTGAMAIFISIWLPEVATPPALLT 71 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L E +G + G ++++ VI ++GL++ T+ + + T Sbjct: 72 LDGMLAL-AGEALIGLMLGFVLQIAFAAPTIAAEVIGGSMGLSMATTTDPNGGGSTTAFG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 I+ L + H + +SY P GQ F + T F LR+ Sbjct: 131 QYFIIVLTLIFLATNAHLHWLALVTESYRAFPPGQTWIGPERFETIFMFGGTLFETALRI 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + P ++ I G+L++ P + ++ + P + G L ++ +I QF+ Sbjct: 191 ALPVTLILLLVQIVTGILSRSAPSLNLFALGLPAGVLAGIAALIIAAPLIYDQFTDL 247 >gi|91223203|ref|ZP_01258469.1| putative flagellar biosynthetic protein FliR [Vibrio alginolyticus 12G01] gi|91192016|gb|EAS78279.1| putative flagellar biosynthetic protein FliR [Vibrio alginolyticus 12G01] Length = 258 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 I+ L+ RVG+ + +P + IP+ VR A++ ++ P + ++ F Sbjct: 10 AILGQLWWPFFRVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSMT 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + L + G + GL++ + G VIS +GL + + L+ L Sbjct: 70 SLF--LAFEQAIWGVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L ++ H V +++S+ P+G + VN+ F L L+ Sbjct: 128 IFLIFSTLLFLALEGHLLVIDIVIQSFVVWPVGSGI-TSLSLQGVVNIFGWMFASSLALA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYT 240 >gi|319944174|ref|ZP_08018450.1| flagellar biosynthesis protein FliR [Lautropia mirabilis ATCC 51599] gi|319742469|gb|EFV94880.1| flagellar biosynthesis protein FliR [Lautropia mirabilis ATCC 51599] Length = 253 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 97/229 (42%), Gaps = 3/229 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L + + R+ P LS IP++ R+ A++ +++ P + + Sbjct: 11 GWLSALLMPLFRLLGLFSSAPLLSSRNIPVRYRVTAALSLAVLAAPLVHGKTP---SFDD 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L+ E+ +G GL+ R+ ++ G +I +G + S + Sbjct: 68 PAFFVLMASEVMIGLAIGLVCRMLLASVEMAGEIIGLQMGFSFAAFFDPSTGSNSNAIGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L + L + VI+ + A + S +P ++ F + L ++ Sbjct: 128 LFNTMSLTSFAVINGPLLLVAATMNSLERMPANMGTQQFLGRLDIGAVISQVFELGLLMA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P++ + N+S+GL++++ PQ+ ++ I P IG G + L L + ++ Sbjct: 188 LPYMALLLFVNLSLGLISRVAPQLNVFAIGFPITIGSGLMLLTLGMPML 236 >gi|99082794|ref|YP_614948.1| flagellar biosynthetic protein FliR [Ruegeria sp. TM1040] gi|99039074|gb|ABF65686.1| Flagellar biosynthetic protein fliR [Ruegeria sp. TM1040] Length = 259 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 113/234 (48%), Gaps = 5/234 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ R+G+ ++ G IP Q+RL + F+ ++ P L Q + Y+ L+ Sbjct: 23 IVFLRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPALPQMPMPQTVMQ---YAGLM 79 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ +G GL +R++ LQ GS+ + L+ +G + + L +++ I G+ Sbjct: 80 ATEVVVGLALGLGLRMFMHMLQTAGSIAAQCTSLS--QVLGGAGADPMPALGAVLWISGI 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 ++DFH +++SY P+G + + V+ + TF L++PFL Sbjct: 138 AVAVMLDFHIHAAQLMIRSYDLFPVGIFPSASGLSEWGVHRVSATFAQAFTLAAPFLITA 197 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +V+N+++G++N+ + Q+ + F+ P + G L + +++ + H L F Sbjct: 198 VVYNLTLGVINRAMTQLMVVFVGAPVITFGGLAILMIGAPMMLEVWGHGLLMFF 251 >gi|196247621|ref|ZP_03146323.1| flagellar biosynthetic protein FliR [Geobacillus sp. G11MC16] gi|196212405|gb|EDY07162.1| flagellar biosynthetic protein FliR [Geobacillus sp. G11MC16] Length = 257 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 93/239 (38%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + LI R+ S +P S +P ++ A FS +L + Y Sbjct: 10 AFLLIFARIASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAV----PKPTLSLNDVYM 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV E+ +G GLL +Q G +I IG + + L + Sbjct: 66 LLVFKEVLVGLALGLLAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGQYLHS 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSP 188 + LL L +D HH + + SY +P+ + + V F++ +++++P Sbjct: 126 LALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIADGRAVDYAVRAFAAMFVVAVQMAAP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++++G++ + VPQ+ I+ + L L +I I++ F F Sbjct: 186 LVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELFQLMF 244 >gi|86152607|ref|ZP_01070812.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612403|ref|YP_001000854.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni 81-176] gi|157415443|ref|YP_001482699.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni 81116] gi|283956577|ref|ZP_06374056.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 1336] gi|85843492|gb|EAQ60702.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249142|gb|EAQ72103.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 81-176] gi|157386407|gb|ABV52722.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 81116] gi|283791826|gb|EFC30616.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 1336] gi|307748085|gb|ADN91355.1| Flagellar biosynthetic protein fliR [Campylobacter jejuni subsp. jejuni M1] Length = 255 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++ Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + S + + ++ Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ D HH + L S G I +G N+ + F+I +S P Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246 >gi|291288732|ref|YP_003505548.1| flagellar biosynthetic protein FliR [Denitrovibrio acetiphilus DSM 12809] gi|290885892|gb|ADD69592.1| flagellar biosynthetic protein FliR [Denitrovibrio acetiphilus DSM 12809] Length = 257 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 2/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +S + V R+G+ + +P + I Q+R A+ ++V+ P L + Sbjct: 10 TFVSFLMAVARIGAILFTVPVFGSNVIKPQIRFVLAILIAMVIFPSLEAMPY--GNLPTG 67 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +V E+ +G G+L +G Q G ++ +G ++ M + + ++S Sbjct: 68 IIIVMVFKEILVGVCIGILSNFLFIGAQLGGQIVGLQMGFSVVNVMDPQSNTQLSIISSF 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I LL + H+ V A+ +S+ +IPIG F+ + F+I +++ + Sbjct: 128 LNIGMLLFFIAVGGHYLVLGAIAESFRSIPIGGAEINPIAFNYIAKLFSYIFLIAIKIMA 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++F+ IG++ KL PQI + + P I +G + + L + F L F Sbjct: 188 PAIITLLIFSTVIGVIGKLAPQINLMIVGFPAKIAIGLIIIALGMNYFFIAFEKILLRYF 247 >gi|224438386|ref|ZP_03659313.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG 18818] gi|313144828|ref|ZP_07807021.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG 18818] gi|313129859|gb|EFR47476.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG 18818] Length = 258 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 3/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+V R P I + VR S+ P T+ + V Sbjct: 13 VAVFLLLVARFSGVFAFFPFFDNQLISINVRAAMVFFMSVAFYPLASYTLPDMSMVE--- 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + E+ LG + + +++ L F G +IS +GL + ++ + + LI Sbjct: 70 FLFAALFEILLGFLASVCLQIVFAMLSFGGELISFTMGLTMASAYDPVSGTQKPIVAQLI 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I+GLL +DFHH +F + S P+G + F+ F + ++ P Sbjct: 130 AILGLLIALSLDFHHTIFLIISHSIQATPLGGFVFEPKSVEYFIKAFGNIFAVGFSMAFP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ +I G++ K PQ + I P I + + L L+I I++ F + F Sbjct: 190 ILAIILLSDIIFGMIMKTHPQFNLLAIGFPVKIAIAFVVLFLTISSIIFTFKNELAKAF 248 >gi|315932323|gb|EFV11266.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 327] Length = 255 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++ Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSAIVLFLTMYLYPLAR----LESLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + S + + ++ Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ D HH + L S G I +G N+ + F+I +S P Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246 >gi|289523554|ref|ZP_06440408.1| flagellar biosynthetic protein FliR [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503246|gb|EFD24410.1| flagellar biosynthetic protein FliR [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 259 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 1/225 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + L+ R + P + P+ V+ FA+ ++ L P L L A Sbjct: 14 ILLVSLRFLGMTIAAPSFAPPSYPVPVKFMFALVLALALSPLLEYPQGLFQGSFIA-LIL 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + + E +G G + Q G +G + + + L L ++ Sbjct: 73 VGLREFCIGLGIGFFASLPLYAFQLAGGFSGINMGFGMVNILDPFSETQISLLGQLKFML 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + + H +F LV S+ +P G + S L F + +++S PFL Sbjct: 133 ALWFYFKWNGHILLFRCLVHSFKLLPFGIWGWSWSNGSITGEWLVELFYLAIKISLPFLG 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++ +I +G + + VPQ+ ++ + I LG L L + ++V Sbjct: 193 AMLLADIGLGFVARTVPQMNVFVLGFSIKILLGMLVLMFMVPLLV 237 >gi|90577373|ref|ZP_01233184.1| putative flagellar biosynthetic protein FliR [Vibrio angustum S14] gi|90440459|gb|EAS65639.1| putative flagellar biosynthetic protein FliR [Vibrio angustum S14] Length = 258 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ + R+G+ ++ +P + IP+ VR A+A S + P + + Sbjct: 10 ALLAQFWWPFFRIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTD--LLS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + G + GL+I + G +IS +GL + + ++ L Sbjct: 68 LSALMLAFEQAIWGLLFGLIIHFLFSIMTLLGQIISLQMGLGMAMMNDPVNGVSVAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + L +D H V LV+S+ + P+G L ++ + + F L ++ Sbjct: 128 MFLLFSTLLFLALDGHLLVIDILVQSFTSWPVGSGLAVSSV-KQILALFGWMFSSALAIA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + ++ Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPARYVEL 242 >gi|297620335|ref|YP_003708472.1| putative type III secretion inner membrane protein SctT [Waddlia chondrophila WSU 86-1044] gi|297375636|gb|ADI37466.1| putative type III secretion inner membrane protein SctT [Waddlia chondrophila WSU 86-1044] Length = 281 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 7/247 (2%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 P + + LFL + R+ I L P +P V+L FA++ + +P L + Sbjct: 16 IEDPGAVFILLFLFLARILPIIALSPFFGARVLPHPVKLAFAISLFAIFVPHLL-VVTQS 74 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 L ELF+G + G LI + +Q G +I G + Sbjct: 75 KLSFTPLSLALFAKELFVGYLIGFLISIPFTIVQTAGMLIDHQRGGASLMVNDPTIQNQS 134 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNML 175 +PL ++ ++ + ++ID A+ SY IP + N +L Sbjct: 135 SPLGTMFNMVLIYIFFMIDGPFYFIDAINTSYSAIPPDRFFNPQFFDKSSAFSEIAFQLL 194 Query: 176 QTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++ ++ +SP L ++ ++ +G+ N+L Q+ I F+ P LG + + +++ Sbjct: 195 NNAMVLAIQFASPALIAILMTDVFLGIANRLATQVQITFLGLPLKSLLGLTLITIGWKVL 254 Query: 236 VYQFSHS 242 + Q + Sbjct: 255 INQMAED 261 >gi|293395591|ref|ZP_06639874.1| flagellar biosynthetic protein FliR [Serratia odorifera DSM 4582] gi|291421910|gb|EFE95156.1| flagellar biosynthetic protein FliR [Serratia odorifera DSM 4582] Length = 260 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F + RV + I P S I +V++ +++ P L + Sbjct: 11 VWLSQYFWPLLRVLALIASAPVFSEKQISKKVKIGLGGLIVLLVAPSLPAN---NIAIFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A L M ++ +G GL ++ ++ G VI +GL+ T S L Sbjct: 68 ASGLWLAMQQILIGVALGLTMQFAFAAVRTAGEVIGMQMGLSFATFFDPSGGPNMPVLAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ LL D H + L S+ T+PI + GN F + F+ L L+ Sbjct: 128 LLNLLALLLFLAFDGHLWLISLLADSFHTLPIQAQPLNGNGFLALTQAGSLIFINGLMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + N+S+GLLN++ PQ+ ++ I P + +G L L L + ++ H F Sbjct: 188 LPLICLLLTLNLSLGLLNRVTPQLSVFVIGFPVTMTIGILTLGLMMPMLAPFCEHLFGDV 247 Query: 247 F 247 F Sbjct: 248 F 248 >gi|261341517|ref|ZP_05969375.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC 35316] gi|288316315|gb|EFC55253.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC 35316] Length = 257 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 101/234 (43%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++L R+ + + P L +++ A+A + ++ P L + + + ++ Sbjct: 12 LLALVFPFFRILAFLHFCPVLDNRAFSRRIKTVLALALAAIITPMLPEKVLITELMS-MR 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ +L G + G+ +++ + LQ G ++S +GL + + + T ++ +I Sbjct: 71 TVLLIGEQLLWGMLFGMAMQLVFVALQTAGHILSMNMGLGMAMMNDPVNGSSTTVISQMI 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L +V+D H V L K + PIGQ +N + V L ++ P Sbjct: 131 YTFCGLLFFVMDGHLLVVTILYKGFVWWPIGQAINKPTLL-LIVQSLGWIMSSATLIAIP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F ++ GLLN++ P + ++ + P + G L + + + I + + Sbjct: 190 TTFVMLIVQGGFGLLNRVSPTLNLFSLGFPISMLFGLLCISMMMTNIPDHYLNL 243 >gi|167770200|ref|ZP_02442253.1| hypothetical protein ANACOL_01543 [Anaerotruncus colihominis DSM 17241] gi|167667522|gb|EDS11652.1| hypothetical protein ANACOL_01543 [Anaerotruncus colihominis DSM 17241] Length = 254 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 5/229 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M S + + L+ R+ + I P LS +P VR + ++ P L Sbjct: 1 MLDSVMAGLPAYMLVFVRMAAMIGTNPLLSRRNVPAAVRAGLTALLTFLIAPGLT----- 55 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 +++ ++ E +G G + +++ L F G V+ GL++ ++ Sbjct: 56 VAPMDQMTLVLAMLKEFLVGFACGYVFQIFYYMLFFAGDVMDMQFGLSMAKVFDPGTNMQ 115 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + + + I+ L ++ + H + S+ +P G ++ ++ F Sbjct: 116 VSVSGNFLNILFSLFIFATNSHLLLVRIFATSFQIVPAGFTPFSPHVSGYIADLFIEAFS 175 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 + LRL+ PF+ V +S+G+L KL+PQI ++ I+ + L + L Sbjct: 176 LALRLALPFIAVEFVLEVSLGILMKLIPQIHVFVINFQLKVFLSLVMLL 224 >gi|149184190|ref|ZP_01862508.1| flagellar biosynthetic protein FliR [Erythrobacter sp. SD-21] gi|148831510|gb|EDL49943.1| flagellar biosynthetic protein FliR [Erythrobacter sp. SD-21] Length = 261 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 90/242 (37%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E M + ++ R+G+ ++ P + +PM VR+ A +I + ++ + + Sbjct: 12 EQDMWRVVFLMTRIGAALLAAPFFGATSVPMAVRVSITGALAIFVATWM-PEVQTPEAIL 70 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + E+ +G G ++++ +I +G+++ S T Sbjct: 71 SLEGLLAIAGEVVIGLALGFVLQLAFAAPTIAAELIGGGMGMSMAVSQDAMGGGTTTSFG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 I+ L H + +SY P GQ F++ F +R+ Sbjct: 131 QYFVIVLTLIFLSTGAHLHWVALVAESYSAFPPGQTWLGAERFAAIAGFASFMFETAIRI 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P ++ + G+L++ P + ++ + P + G L +S +I QF+ Sbjct: 191 ALPVTLILLLVQVITGILSRSAPSLNLFALGLPAGVLAGMAALIISAPLIYDQFAGLVAD 250 Query: 246 GF 247 Sbjct: 251 AL 252 >gi|153951433|ref|YP_001397725.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. doylei 269.97] gi|152938879|gb|ABS43620.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. doylei 269.97] Length = 255 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++ Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + S + ++ Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ D HH + L S G I +G N+ + F+I +S P Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNIGMFNIFIIGFTMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246 >gi|86150984|ref|ZP_01069200.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 260.94] gi|315124645|ref|YP_004066649.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85842154|gb|EAQ59400.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 260.94] gi|315018367|gb|ADT66460.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 255 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++ Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + S + + ++ Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ D HH + L S G I +G N+ + F+I +S P Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIVLGFVVLIAILLVMMQYFKNLILELF 246 >gi|242308811|ref|ZP_04807966.1| flagellar biosynthesis protein FliR [Helicobacter pullorum MIT 98-5489] gi|239524650|gb|EEQ64516.1| flagellar biosynthesis protein FliR [Helicobacter pullorum MIT 98-5489] Length = 242 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 2/236 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + L++ R + P I Q++ F +I+ +P + + Sbjct: 9 EGNVTNFLLLLLRFAGIVAFFPFFENQLINTQIKGIFIFWLTILFIPLVTTLPPTN--MT 66 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + E+ LG + +++ + F G +IS A+GL + + + + Sbjct: 67 ILEFIIAGITEIMLGFLASFALQIVFGMISFGGELISFAMGLTIANAYDPVTGAQKPIVG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ ++ L+ + +D+HH Y + S IP+G + N + F+I L + Sbjct: 127 QLLSLLALMIVLALDYHHLFLYFVADSIKEIPLGGFIYSNNYILYTIKAFSNLFLIGLTM 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 S P + ++ +I G++ K PQ + I P I + L + I I+ F Sbjct: 187 SFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAVAFAVLIVIIPAIIIHFKR 242 >gi|57238051|ref|YP_179300.1| flagellar biosynthesis protein FliR [Campylobacter jejuni RM1221] gi|148926184|ref|ZP_01809869.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|57166855|gb|AAW35634.1| flagellar biosynthetic protein FliR [Campylobacter jejuni RM1221] gi|145845355|gb|EDK22448.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|315058611|gb|ADT72940.1| Flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni S3] Length = 255 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++ Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + S + ++ Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ D HH + L S G I +G N+ + F+I +S P Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246 >gi|205356203|ref|ZP_03222969.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345808|gb|EDZ32445.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 255 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++ Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + S + + ++ Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ D HH + L S G I +G N+ + F+I +S P Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFAMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246 >gi|254457578|ref|ZP_05071006.1| flagellar biosynthetic protein FliR [Campylobacterales bacterium GD 1] gi|207086370|gb|EDZ63654.1| flagellar biosynthetic protein FliR [Campylobacterales bacterium GD 1] Length = 255 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 102/243 (41%), Gaps = 3/243 (1%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + ++ L+ R + M P S IPM ++ A F+IV LQ + Sbjct: 9 SDTYIVGFILLFFRFAALFMAAPIFSHKNIPMTIKTSMAFFFTIVFY---SSMPPLQIDI 65 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 N ++ EL G G+++ + + F G IS +G ++ +++ ++ + Sbjct: 66 NVPTVVLAILSELLFGLAIGVVLLLAYNVITFAGGQISFMMGFSMASAIDPQTGVSMPII 125 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + + ++GL+ L ID HH + + S IP+G L ++F+ + F++ Sbjct: 126 SQFLSLMGLMILLAIDLHHWLLLFIDGSLSAIPLGGFLLTEDLFNYMIKATSNMFIVGFM 185 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ P + + ++ G+L K +PQ + I P I + + L + + L Sbjct: 186 IAFPIIALSWLADVIFGMLMKTMPQFNLLVIGFPIKIMVAFMVLIATFSATMLILKSQML 245 Query: 245 YGF 247 F Sbjct: 246 EAF 248 >gi|85060036|ref|YP_455738.1| flagellar biosynthesis protein FliR [Sodalis glossinidius str. 'morsitans'] gi|84780556|dbj|BAE75333.1| flagellar biosynthetic protein FliR [Sodalis glossinidius str. 'morsitans'] Length = 262 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ LF + R+ + I P S I ++L + ++++ P L + + + Sbjct: 11 ALLPQLFWPLLRILALISTAPLFSEKSILAPIKLGLGILIALLIAPSLPA---VDSPLFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + ++ +G GL +++ ++ G VI +GL+ T + L L Sbjct: 68 LAGFWLALKQILIGTALGLTMQLTFAAVRMAGEVIGLQMGLSFTTFFDPASGLNTPLLAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ LL ++ H + L S+ +P+ +L F + F+ + L+ Sbjct: 128 LLNLLALLVFISLNGHLWLLSLLADSFHILPLDSQLMDPGAFMALARAGGIIFLNGMMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + + NI++GLLN++ PQ+ ++ I P + +G L L + + + S + G Sbjct: 188 LPLICMLMTLNIALGLLNRITPQLTVFVIGFPLTLTVGILTFSLLLPLPLLAPSWEKMMG 247 >gi|167750710|ref|ZP_02422837.1| hypothetical protein EUBSIR_01688 [Eubacterium siraeum DSM 15702] gi|167656389|gb|EDS00519.1| hypothetical protein EUBSIR_01688 [Eubacterium siraeum DSM 15702] gi|291532048|emb|CBK97633.1| Flagellar biosynthesis pathway, component FliR [Eubacterium siraeum 70/3] Length = 262 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 97/234 (41%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + LI+CRV P S S P+++R +A +++ + + + Sbjct: 14 FLGFLLIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGNIKYEPTGIFMML 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + +M EL LG + G ++ + G +I GL++ +M + ++ ++ Sbjct: 74 FD--MMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVSMPLFANVY 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L ++ + H SY T+PIG ++ + V T + ++L++P Sbjct: 132 YYMFILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLTLAVKLAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + + I +G+L K VP I I+ ++ + +G + + + + Sbjct: 192 IIAIEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLIMAQPMSDFIEKL 245 >gi|86150314|ref|ZP_01068540.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596317|ref|ZP_01099554.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 84-25] gi|218562791|ref|YP_002344570.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839139|gb|EAQ56402.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191158|gb|EAQ95130.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 84-25] gi|112360497|emb|CAL35294.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926403|gb|ADC28755.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp. jejuni IA3902] gi|315926597|gb|EFV05978.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 255 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L++ R+G I+ P S + IPM ++ + ++ L P L++ ++ Sbjct: 12 VVTFMLLLARMGGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + S + + ++ Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ D HH + L S G I +G N+ + F+I +S P Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246 >gi|160939624|ref|ZP_02086972.1| hypothetical protein CLOBOL_04516 [Clostridium bolteae ATCC BAA-613] gi|158437415|gb|EDP15179.1| hypothetical protein CLOBOL_04516 [Clostridium bolteae ATCC BAA-613] Length = 259 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 99/231 (42%), Gaps = 1/231 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L++ R+G + + P S +P VR +A S+++ P + + + Sbjct: 12 FLLVLARMGGLVFINPVFSRRGVPPMVRTGLVLALSLLIAPGVRSGAGQVMAFSTFDMVE 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E+ LG V G + ++ L G + T GL + M + + + L + + Sbjct: 72 SLIREVILGLVIGCVFHIFFYMLYVAGDFLDTVFGLAMGKVMDPAGGVQTSILGQFVNVF 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L + H + SY +P+G + G I + + + F+++++L PF+ Sbjct: 132 FYLYFFATGCHLTMVRLFAYSYQVVPVGAGAILGGRILWYIITLFGSVFLMVIKLVLPFV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + +++G+L KL+PQI ++ I+ I LG + + L + Sbjct: 192 AAEFILEMTMGVLMKLIPQIHVFVINIQCKILLGIMLMMLFAYPMGAFMDR 242 >gi|283954736|ref|ZP_06372252.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 414] gi|283793576|gb|EFC32329.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 414] Length = 255 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++ Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL++++ + G I+ +G + + + + + + ++ Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPNSGTSMPITSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L+ D HH + L S G I +G N+ + F+I +S P Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLVAILLVMMQYFKNLVLELF 246 >gi|291277528|ref|YP_003517300.1| flagellar biosynthetic protein [Helicobacter mustelae 12198] gi|290964722|emb|CBG40577.1| flagellar biosynthetic protein [Helicobacter mustelae 12198] Length = 254 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 3/237 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L++ R G P IP+ +R A +V P L T ++ + Sbjct: 14 AFLLLLLRFGGIFAFFPFFDSGLIPVSLRGALAFFMCLVFFPILPHT---PLQLDTVSFL 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +EL G + L++++ L F G IS ++GL + ++ + + + ++ + Sbjct: 71 IAGSLELLFGFLASLVLQIIFSTLAFAGDSISFSMGLTMASAYDPATGSQKPIVGQVLMM 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + +L DFHH +F + +S IP+G + NI + + F + ++ P L Sbjct: 131 LAMLIALQSDFHHVIFSFVAQSLEQIPLGHFVTKQNILETIIYDFSLLFSVGFAMAFPIL 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +I G++ K PQ + I P I L + + + I I+ FS GF Sbjct: 191 GLILLSDIVFGMIMKTHPQFNLLAIGFPVKIALAFIAIIVIIPSIMNVFSTHLKNGF 247 >gi|157147127|ref|YP_001454446.1| hypothetical protein CKO_02904 [Citrobacter koseri ATCC BAA-895] gi|157084332|gb|ABV14010.1| hypothetical protein CKO_02904 [Citrobacter koseri ATCC BAA-895] Length = 257 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 105/234 (44%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +M+L L R+ + + P L ++++ A+A SI++ P L + + L ++ Sbjct: 12 LMALVLPFFRILAFLQFAPVLDNRAFSRRIKIAAALALSIIITPMLPNNVVLSELLS-MR 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ +L G + G+ +++ + LQ G ++S +GL + + + T ++ +I Sbjct: 71 TVLLIGEQLLWGFLFGMALQLVFVTLQTAGHILSMNMGLGMAMMNDPVNGSSTTVISQII 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L +++D H + L K + PIGQ +N + V L ++ P Sbjct: 131 YVFCALLFFIMDGHLLLVTILFKGFSYWPIGQAIN-QPTLTLIVQGLGWIMASATLIALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F ++ GLLN++ P + ++ + P + G L + + + I + + Sbjct: 190 TTFVMLIVQGGFGLLNRVSPTLNLFSLGFPISMLFGLLCISMMVTNIPDHYLNL 243 >gi|209695728|ref|YP_002263658.1| flagellar biosynthesis protein FliR [Aliivibrio salmonicida LFI1238] gi|208009681|emb|CAQ79980.1| polar flagellar assembly protein FliR [Aliivibrio salmonicida LFI1238] Length = 260 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 89/236 (37%), Gaps = 1/236 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + F R+ S +M++ ++ ++RL ++ + ++P + ++ Sbjct: 11 FIATYFWPYTRISSMLMVMSVFGARFVSPKIRLYLGLSITFAVMPAIPAMPPEIQLLSFQ 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ +G G++ T G ++ L + + ++ L L Sbjct: 71 GFMT-TAEQIIIGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + +L D H ++ V S+ T+P+G F S L L +S Sbjct: 130 FMFLSILFFLGTDGHLKMINFAVMSFTTLPVGVGKLTSVDFQSLAGWLGIMMKAGLSMSL 189 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + N+S G++ + PQ+ I+ + + + +G L + + + + Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIVLGLFTHYDLHW 245 >gi|83944180|ref|ZP_00956636.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36] gi|83955119|ref|ZP_00963775.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1] gi|83840448|gb|EAP79621.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1] gi|83845047|gb|EAP82928.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36] Length = 251 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 3/238 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + S F++ R+G+ +M +PG IP++ RL A+ S+ LLP L + A Sbjct: 10 LFFSFFVVFARIGTALMFMPGFGEVQIPVRPRLSLAVLISLSLLPLTPIASALPDSAVTA 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L+ E+ +G GL R+ LQF G + GL T + +L Sbjct: 70 VF--LLGAEVLIGLWIGLCARILLSALQFAGFQVGQVSGLANAFGPSFGSFEGATMVATL 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + ++V D HH + AL+ SY P GQ + ++ + + + I +++ Sbjct: 128 LLMSAVTMIFVTDTHHLIIRALLASYQVFPPGQFV-LADLADQILRVASASLYIGTAIAA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 PF ++ N+ +GL N+++PQ+P++F++ LIG G L L +++ ++ F F Sbjct: 187 PFFVMGVILNLGMGLANRMMPQLPVFFVAASLLIGAGLLILAIALPAMLDYFLVRFQE 244 >gi|149203119|ref|ZP_01880090.1| flagellar biosynthetic protein FliR [Roseovarius sp. TM1035] gi|149143665|gb|EDM31701.1| flagellar biosynthetic protein FliR [Roseovarius sp. TM1035] Length = 254 Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 113/229 (49%), Gaps = 5/229 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + RV I LLPG S +PM+++L +AF++++ P L + Q RA L++ Sbjct: 21 VFLRVAPIIGLLPGFGESSVPMRIKLVLVIAFTLIVTPVLSPDLADQ---ARAPTVGLIL 77 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E +G G+ +R++ + LQ GS+ + + +L +G + + L+ + Sbjct: 78 SETIVGLALGVALRLFLMALQMAGSIAAQST--SLAQILGNASQTPLPAIGHLLATGAVA 135 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ++ H ++ +V SYG P+ + + G + V + F L++PF+ + Sbjct: 136 LMMIMGVHVRLAEMIVLSYGIFPVAEFPDVGTLSQWGVARIAQAFSFGFSLAAPFVLVSV 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++N+++G++N+ +PQ+ + + P + L L L + ++ + +F Sbjct: 196 LYNLTLGIINRAMPQLMVVLVGAPAAMALTLFLLMLVVPTMLVVWLGAF 244 >gi|163733156|ref|ZP_02140600.1| flagellar biosynthetic protein FliR [Roseobacter litoralis Och 149] gi|161393691|gb|EDQ18016.1| flagellar biosynthetic protein FliR [Roseobacter litoralis Och 149] Length = 256 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 111/227 (48%), Gaps = 5/227 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F++ CRV + +LP +P +V+L A+AF++++ P L + S + Sbjct: 19 FVVFCRVAALAAVLPAFGEQTLPARVKLAAALAFTLIVAPAL---PTISPPNAIGSISLV 75 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E+ G G+ +R++ L LQ GS+ + + L+ +G + + ++ I G Sbjct: 76 ILTEVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLS--QVLGGAAVDPLPAMGYILVIAG 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L + H +V + ++ SY +P+G+ + ++ + F + L++PF+ Sbjct: 134 LALAVMAGLHVKVAHLIILSYDFMPVGRFVAAADVSEWGTKQVAQAFSLAFTLAAPFVIL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 +++N ++G +N+ +PQ+ + F+ P + G L +S ++ + Sbjct: 194 SVLYNFALGAINRAMPQLMVAFVGAPVITLGGLALLLISAPYMLTVW 240 >gi|310659025|ref|YP_003936746.1| flir [Clostridium sticklandii DSM 519] gi|308825803|emb|CBH21841.1| FliR [Clostridium sticklandii] Length = 262 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 104/237 (43%), Gaps = 3/237 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ RV I + P + IP+ V++ ++ S ++LPFL ++ + Sbjct: 16 FLLILSRVIGFISVAPVYGRNGIPLYVKIGLSIIVSYIILPFL--VFEISTPIGSPELIF 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + E+ G GL+ +++ G++I +GL++ T + + I Sbjct: 74 MSFKEVITGLGLGLIAQLFFSIFASAGAIIDMELGLSMSQVYDPQIGGQVTVTSKFLDIF 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 L ID HH + A++ S+ +P+G + F +F ++ F+ + ++ P + Sbjct: 134 AYLIFLYIDGHHYLMRAIINSFYILPLGSAQISNDNFINFTSKLVSYIFVSAITIAIPII 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N+ + + K++PQ+ ++ + P+ I LG + +S+ I + + Sbjct: 194 ISIFLGNLLLAFMAKIMPQMNVFIVGMPFKIFLGLIIFIISLPYIGEVIRKILMNIY 250 >gi|254523778|ref|ZP_05135833.1| flagellar biosynthetic protein FliR [Stenotrophomonas sp. SKA14] gi|219721369|gb|EED39894.1| flagellar biosynthetic protein FliR [Stenotrophomonas sp. SKA14] Length = 263 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 3/210 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R+G+ M +P + +P +VR+ A +I L P L + F + Sbjct: 20 TVLWTMLRIGAVAMAMPMVGTRAVPARVRVVLAGTLAIALAPLLPPVPEWTGFDAATVLT 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G L+R+ G +I+ GL + + Sbjct: 80 --IARELAIGVAIGFLLRLVFEAGAMAGELIAQGTGLAFAQMSDPLRGGTSGVIGQWFYL 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 + L + + H + +V SY +PIG L + F S L T L L+ P Sbjct: 138 LFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTLAIPL 197 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPY 219 + N++ G+L + P + + P Sbjct: 198 TVAMLAVNLAFGVLARAAPALNPIQLGLPV 227 >gi|260752856|ref|YP_003225749.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552219|gb|ACV75165.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 265 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + + R G+ + P L + P+ VR+ A+A + + + V+ Sbjct: 10 ENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMHAHLILPDSGLVS 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 LV+ E+ G G +++ T +I A+GL + + + L Sbjct: 70 FTGLF-LVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLT 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + I+G D H + +V+SY T+P+G +F F I + + Sbjct: 129 QIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLI 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F I+ + +G L++ P + ++ + P + +G L + +S+ I + Sbjct: 189 ALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPMALIIGILLIAISVPAISEGVIDAIRS 248 Query: 246 GF 247 G Sbjct: 249 GL 250 >gi|134095089|ref|YP_001100164.1| flagellar biosynthetic protein fliR [Herminiimonas arsenicoxydans] Length = 222 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 84/208 (40%), Gaps = 2/208 (0%) Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98 ++ + ++++ P + + + L +G G +R+ G++ G Sbjct: 2 KISLGIMLALIIAPTVPALPAMDPMSPAGLLILVQQ--LLIGLTMGFAMRIVFAGVEMAG 59 Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158 + +GL + + ++ + ++ L+ + H V L +S+ +PI Sbjct: 60 EITGMTMGLGFASFFDPQTRARSSAISQFLALLILMIYLSTNLHLVVLSTLAQSFELLPI 119 Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 F V F ++LS P + ++ NI++G+L + PQ+ I+ I P Sbjct: 120 SSNFVSTEGFFQVVKWGGRIFSAGVQLSLPMVAALLMTNIALGILTRAAPQLNIFGIGFP 179 Query: 219 YLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 IG+G + + + + ++ F + G Sbjct: 180 ITIGVGFIMIAIVLPYLMNPFINLMQEG 207 >gi|91200238|emb|CAJ73282.1| similar to flagellar biosynthetic protein FliR [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 110/227 (48%), Gaps = 3/227 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L L+ RVG ++ P S ++IPM +R+ A+ + +L P L + + + Sbjct: 16 LMLVFFRVGGILLFAPVFSNTHIPMLLRIAIALILAFILYPNLDKNLH-ELPSELIPFGL 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD--SLAETPLNSLIG 129 +V+ E+ +G + G + G ++S +GL++ S E ++ Sbjct: 75 IVVKEIAIGAIVGFAASILFAAFSMAGYLLSNQMGLDMAVIADPSSLSGDEEPTVSVFYN 134 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 +I +L L ID HH A+ +S+ +PIG I + +++ +T F+I +++S P Sbjct: 135 LIAILLLLAIDGHHYFINAIAQSFHAVPIGSFDYTTAILTKILSLFRTLFVIGIKISIPA 194 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++ +++ L+ K+ +I I+ I+ P I +G + + +S +++ Sbjct: 195 FVVLMLSVVAMALMAKVAKEINIFVIAYPIKIIIGFIVVFVSFPLMI 241 >gi|260429506|ref|ZP_05783483.1| flagellar biosynthetic protein FliR [Citreicella sp. SE45] gi|260420129|gb|EEX13382.1| flagellar biosynthetic protein FliR [Citreicella sp. SE45] Length = 248 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 109/233 (46%), Gaps = 3/233 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + S ++ R+G+ + LPGL IP++VR+ A+ + +L + + L Sbjct: 6 GALWSGLIVFLRIGAMMASLPGLGEQIIPVRVRMVLALVLTAAVLSAVLPGMALPPP-GL 64 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ V+ E G GL +R++ LQ GS+ + + +L +G S + + Sbjct: 65 GALARAVLTETVNGLAIGLWLRLFIHALQTAGSIAAQST--SLAQLLGNSAADPMPAIGH 122 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ + L L FH + +V SY +P + + I + + +F++ L+ Sbjct: 123 LLTVAALALLMTTGFHVKAAAFVVLSYDLLPAMRFPDPSMIAQAGRGQIARSFLLAFTLA 182 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 +PF+ ++N+++G +NK +PQ+ + F+ P + L L+ +++ + Sbjct: 183 APFVILSALYNLTLGFINKAMPQLMVAFVGAPVITLGSIALLLLTAPVMLSVW 235 >gi|56551545|ref|YP_162384.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis ZM4] gi|56543119|gb|AAV89273.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis ZM4] Length = 265 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + + R G+ + P L + P+ VR+ A+A + + + V+ Sbjct: 10 ENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMDAHLILPDSGLVS 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 LV+ E+ G G +++ T +I A+GL + + + L Sbjct: 70 FTGLF-LVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLT 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + I+G D H + +V+SY T+P+G +F F I + + Sbjct: 129 QIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLI 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F I+ + +G L++ P + ++ + P + +G L + +S+ I + Sbjct: 189 ALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPMALIIGILLIAISVPAISEGVIDAIRS 248 Query: 246 GF 247 G Sbjct: 249 GL 250 >gi|269139499|ref|YP_003296200.1| flagellar biosynthesis pathway, component FliR [Edwardsiella tarda EIB202] gi|267985160|gb|ACY84989.1| flagellar biosynthesis pathway, component FliR [Edwardsiella tarda EIB202] gi|304559388|gb|ADM42052.1| Flagellar biosynthesis protein FliR [Edwardsiella tarda FL6-60] Length = 262 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F R+ + P L +P ++R+ A + +L P L T + Sbjct: 11 LWLGQFFWPFIRLLALYSTAPMLGEKAVPRKIRIALAALTAFLLAPQLPPT---DITLAS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + ++ +GC GL +++ ++ G VI +GL+ T S L Sbjct: 68 GGALWLAIQQILIGCAIGLTMQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ LL ++ H L S+ T+P+ GN F + F+ + L+ Sbjct: 128 LLNLLALLLFLSVNGHLWTISLLADSFRTLPLSTHPLNGNGFLALAQSGNLIFLNGMMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + N+++GLLN++ PQ+ I+ + P + +G + L + + ++ H Sbjct: 188 LPLIALLLTLNMALGLLNRMTPQLSIFVVGFPLTLTIGMMTLSMLMPMLAPFVEHL 243 >gi|126734113|ref|ZP_01749860.1| flagellar biosynthetic protein FliR [Roseobacter sp. CCS2] gi|126716979|gb|EBA13843.1| flagellar biosynthetic protein FliR [Roseobacter sp. CCS2] Length = 259 Score = 125 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 111/241 (46%), Gaps = 2/241 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + + +LF + R+G+ + +LP +P +VRL A+ F++++ P + + + Sbjct: 11 SQAALWTLFAVFTRIGAVMAVLPAFGDQPVPTRVRLVLAVMFTLIVAPAVAPSFETVPTA 70 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 A + L M E G G+ +R + L LQ GS+ + + L+ G + + + Sbjct: 71 LLAGFGILAM-EALTGLFFGIFLRFFILVLQIAGSIAAQSTSLSQIFG-GTAAVDPQPAI 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 ++ + G + H Q ++ +Y +P G L + V + TF Sbjct: 129 GHMLVVSGTALAALSGLHIQAASYMIHTYTLVPFGAGLERSLVAEVGVAEVGRTFGFGFM 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L++PFL +++N+ +G++N+ +PQ+ + F+ P L G L+ I++ + +F Sbjct: 189 LAAPFLIASLIYNVVLGVINRAMPQLMVSFVGAPALTAGGLFLFFLTAPIMLAIWVAAFS 248 Query: 245 Y 245 Sbjct: 249 D 249 >gi|255348945|ref|ZP_05380952.1| type III secretion system, membrane protein [Chlamydia trachomatis 70] gi|255503484|ref|ZP_05381874.1| type III secretion system, membrane protein [Chlamydia trachomatis 70s] gi|255507162|ref|ZP_05382801.1| type III secretion system, membrane protein [Chlamydia trachomatis D(s)2923] gi|296435170|gb|ADH17348.1| type III secretion system, membrane protein [Chlamydia trachomatis E/150] gi|296438890|gb|ADH21043.1| type III secretion system, membrane protein [Chlamydia trachomatis E/11023] Length = 289 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 108/237 (45%), Gaps = 7/237 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + + Sbjct: 31 FLLLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYI 90 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGI 130 L++ E+ +G + GLL +Q GS I+ G+ L+ + + +P Sbjct: 91 LLIKEILIGVLIGLLFSFPFYAVQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHY 150 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLR 184 + W+ H + L++S IP+ ++ + + M Q ++ ++ Sbjct: 151 FVTIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMCQLCLIMTIQ 210 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LS+P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 211 LSAPAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 267 >gi|238920323|ref|YP_002933838.1| flagellar biosynthesis protein FliR [Edwardsiella ictaluri 93-146] gi|238869892|gb|ACR69603.1| flagellar biosynthetic protein FliR, putative [Edwardsiella ictaluri 93-146] Length = 261 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + F R+ + P L IP +VR+ A + +L P L T + Sbjct: 11 LWLGQFFWPFIRLLALYSTAPMLGEKVIPRKVRIALAALTAFLLAPQLPPT---DITLAS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + ++ +GC GL +++ ++ G VI +GL+ T S L Sbjct: 68 DGALWLAIQQILIGCAIGLTMQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLAR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ ++ LL + H L S+ T+P+ GN F + + F+ + L+ Sbjct: 128 LLNLLALLLFLCANGHLWTISLLADSFHTLPLSTHPLNGNGFLALAQSGKLIFLSGMMLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI++GLLN++ PQ+ I+ I P + +G + L + + ++ H Sbjct: 188 LPLITLLLTLNIALGLLNRMTPQLSIFVIGFPLTLTIGMMTLSMLMPMLAPFVDHL 243 >gi|241761182|ref|ZP_04759271.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374801|gb|EER64262.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 265 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + + R G+ + P L + P+ VR+ A+A + + + V+ Sbjct: 10 ENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMDAHLILPDSGLVS 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 LV+ E+ G G +++ T +I A+GL + + + L Sbjct: 70 FTGLF-LVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLT 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + I+G D H + +V+SY T+P+G +F F I + + Sbjct: 129 QIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLI 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F I+ + +G L++ P + ++ + P + +G L + +S+ I + Sbjct: 189 ALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPMALIIGILLIAISVPAISEGVIDAIRS 248 Query: 246 GF 247 G Sbjct: 249 GL 250 >gi|88704275|ref|ZP_01101989.1| flagellar biosynthetic protein FliR [Congregibacter litoralis KT71] gi|88701326|gb|EAQ98431.1| flagellar biosynthetic protein FliR [Congregibacter litoralis KT71] Length = 259 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 112/241 (46%), Gaps = 2/241 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ + RV + + P S S I ++VR+ A+ + ++ P L T ++ Sbjct: 13 LLLHTYLWPFLRVSAMFLAAPIFSYSSISVRVRVLLAVLVAALVAPLLPTTPVVEPLSAV 72 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L + E+ +G V G ++++ + G ++ ++GL S+ + + ++ Sbjct: 73 GL--VLALREVAIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMSVDPQNGVQVPVVSQ 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L ++ L ID H + A+V S+G +P+G ++ +FS+ ++ F L L+ Sbjct: 131 LNVVLATLLFLAIDGHLILISAVVDSFGLVPVGSAISPEGMFSNVASLGTQLFASALLLA 190 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P L ++ N++ G++ + PQ+ I+ + P I G +F+ L++ + + G Sbjct: 191 LPTLTAILMINVAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLALPMFISTLQRFLSLG 250 Query: 247 F 247 Sbjct: 251 L 251 >gi|317121831|ref|YP_004101834.1| flagellar biosynthetic protein FliR [Thermaerobacter marianensis DSM 12885] gi|315591811|gb|ADU51107.1| flagellar biosynthetic protein FliR [Thermaerobacter marianensis DSM 12885] Length = 257 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 4/212 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L + R ++ P +P R A+ ++ + P + + Y Sbjct: 14 FLLCLARTSGLVVASPVFGGGLVPAPARAFLAVLLALSIFPLMPPVSPPATVLG---YGG 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E+ +G GL+ + +Q G ++ + G L S + L + ++ Sbjct: 71 ALLAEVAVGLALGLVTALVFAAVQLAGQLLDLSTGFGLSGVFDPVSSQSMPVLGHFLYLV 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L D HH + AL +SY + +++ F L LS P L Sbjct: 131 MWAMLLATDGHHLILRALAESYRRV-PPGGAGLAAGAPVVLDLAGWMFATGLMLSLPVLA 189 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223 + +++GL+++ VPQ ++ P + + Sbjct: 190 VLVAVMVALGLVSRAVPQFNVFITGLPVQVAV 221 >gi|157373226|ref|YP_001471826.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3] gi|157315600|gb|ABV34698.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3] Length = 257 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + R+ M++P LS SYIP+ VR+ A+ S +L P L + A + Sbjct: 16 FWWPFFRIMGAFMVMPFLSSSYIPVTVRVLLALTISTLLAPMLPPLPSVDAISIGALF-- 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L + +L +G + GL + + + G+++S +GL + ++ + L + Sbjct: 74 LAIEQLLVGFMLGLFLTIMIHVMTLLGAMMSMQMGLAMAVMNDPANGSSNPILGQWFLLY 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 G L +D H LV S+ PIG + + V+ F L L+ P + Sbjct: 134 GTLLFLALDGHLVAIGVLVDSFRLWPIGSGVLDLPLM-GLVSRFAWIFASALMLALPSIL 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ NI+ G+L++ P + ++ + P + +G L + LS + ++S L Sbjct: 193 AMLMVNITFGVLSRAAPSLNVFALGFPMSMLMGLLCVMLSFSGLPTRYSDICLDAL 248 >gi|168334563|ref|ZP_02692719.1| flagellar biosynthesis protein FliR [Epulopiscium sp. 'N.t. morphotype B'] Length = 262 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 92/203 (45%), Gaps = 1/203 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI R+ + + L P + + +P V A+ ++++ F + YS Sbjct: 14 WLLIFVRIVAVLSLFPIILETKVPATVVAMLAIILTMIVF-FTIPQGTISYANTWLGYSI 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E+ +G V G + ++ L FTG + S GL++ + L + + Sbjct: 73 LVIKEMLVGMVLGFGVLIFFQVLNFTGQLWSNQGGLSMSQFYDPALGAQIPVLGRFLTLG 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + +H AL+K++ IP+G + +I + ++ + F + +L++P L Sbjct: 133 FSTIFVLSGGYHYFISALIKTFEYIPLGTQFFNPSISITILDAVAIFFELGFKLATPILG 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYF 214 ++ ++ +G+L + VPQ+ ++ Sbjct: 193 TILLIDVGLGILARTVPQMNMFV 215 >gi|284989538|ref|YP_003408092.1| flagellar biosynthetic protein FliR [Geodermatophilus obscurus DSM 43160] gi|284062783|gb|ADB73721.1| flagellar biosynthetic protein FliR [Geodermatophilus obscurus DSM 43160] Length = 254 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 3/228 (1%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 P M +L L R ++L P + IP V+ A+A S+ L+ + + Sbjct: 6 PAGTMAALLLGTARATGFVLLAPPFNSRSIPAPVKGALALALSVALMTRIAPELPDPT-- 63 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + E+ +G G ++ V +Q+ G +I G +LQ + + + Sbjct: 64 -TGFLVVGAVTEVAIGAALGFVVHVLFAAVQYAGDLIDLTGGFSLQPAYDPLSMTTSSSV 122 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 L ++ L+ H V SY +P+G + + + L F+ L+ Sbjct: 123 GRLHYLLATTLLFTSGGHLLVVRGFATSYEGLPVGGSVPTEQLAQVLITALSMMFLAALQ 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 ++ P + ++ ++++ LL++ P + I+ P I L L L+ Sbjct: 183 IAGPMVAVLLLADVALALLSRAAPALNIFSFGFPVKIMLTMALLGLTF 230 >gi|190574227|ref|YP_001972072.1| putative flagellar biosynthetic protein [Stenotrophomonas maltophilia K279a] gi|190012149|emb|CAQ45772.1| putative flagellar biosynthetic protein [Stenotrophomonas maltophilia K279a] Length = 257 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 3/210 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++ + R+G+ M +P + +P ++R+ A +I L P L D F + Sbjct: 14 TVLWTMLRIGAVAMAMPMVGTRAVPARIRVILAGTLAIALAPLLPPVPDWTGFDAATVLT 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G G L+R+ G +I+ GL + + Sbjct: 74 --IARELAIGVSIGFLLRLVFEAGAMAGELIAQGTGLAFAQMSDPLRGGTSGVIGQWFYL 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPF 189 + L + + H + +V SY +PIG L + F S L T L L+ P Sbjct: 132 LFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTLAIPL 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPY 219 + N++ G+L + P + + P Sbjct: 192 TVAMLAVNLAFGVLARAAPALNPIQLGLPV 221 >gi|15605293|ref|NP_220079.1| Yop proteins translocation protein T [Chlamydia trachomatis D/UW-3/CX] gi|76789301|ref|YP_328387.1| SctT [Chlamydia trachomatis A/HAR-13] gi|166154779|ref|YP_001654897.1| type III secretion system, membrane protein [Chlamydia trachomatis 434/Bu] gi|166155654|ref|YP_001653909.1| type III secretion system, membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802993|ref|YP_002888187.1| type III secretion system, membrane protein [Chlamydia trachomatis B/Jali20/OT] gi|237804915|ref|YP_002889069.1| type III secretion system, membrane protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311383|ref|ZP_05353953.1| type III secretion system, membrane protein [Chlamydia trachomatis 6276] gi|255317684|ref|ZP_05358930.1| type III secretion system, membrane protein [Chlamydia trachomatis 6276s] gi|301336054|ref|ZP_07224298.1| type III secretion system, membrane protein [Chlamydia trachomatis L2tet1] gi|3329005|gb|AAC68166.1| Yop proteins translocation protein T [Chlamydia trachomatis D/UW-3/CX] gi|76167831|gb|AAX50839.1| SctT [Chlamydia trachomatis A/HAR-13] gi|165930767|emb|CAP04264.1| type III secretion system, membrane protein [Chlamydia trachomatis 434/Bu] gi|165931642|emb|CAP07218.1| type III secretion system, membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273215|emb|CAX10128.1| type III secretion system, membrane protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274227|emb|CAX11021.1| type III secretion system, membrane protein [Chlamydia trachomatis B/Jali20/OT] gi|296436098|gb|ADH18272.1| type III secretion system, membrane protein [Chlamydia trachomatis G/9768] gi|296437026|gb|ADH19196.1| type III secretion system, membrane protein [Chlamydia trachomatis G/11222] gi|296437958|gb|ADH20119.1| type III secretion system, membrane protein [Chlamydia trachomatis G/11074] gi|297140459|gb|ADH97217.1| type III secretion system, membrane protein [Chlamydia trachomatis G/9301] gi|297748694|gb|ADI51240.1| type III secretion inner membrane protein SctT [Chlamydia trachomatis D-EC] gi|297749574|gb|ADI52252.1| type III secretion inner membrane protein sctT [Chlamydia trachomatis D-LC] Length = 289 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 106/237 (44%), Gaps = 7/237 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + + Sbjct: 31 FLLLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYI 90 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGI 130 L++ E+ +G + G L Q GS I+ G+ L+ + + +P Sbjct: 91 LLIKEILIGVLIGFLFSFPFYAAQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHY 150 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLR 184 + W+ H + L++S IP+ ++ + + M Q ++ ++ Sbjct: 151 FVTIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMCQLCLIMTIQ 210 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LS+P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 211 LSAPAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 267 >gi|289525609|emb|CBJ15087.1| type III secretion system, membrane protein [Chlamydia trachomatis Sweden2] Length = 289 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 108/237 (45%), Gaps = 7/237 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + + Sbjct: 31 FLLLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYI 90 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGI 130 L++ E+ +G + GLL +Q GS I+ G+ L+ + + +P Sbjct: 91 LLIKEILIGVLIGLLFSFPFYAVQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHY 150 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLR 184 + W+ H + L++S IP+ ++ + + M Q ++ ++ Sbjct: 151 FVTIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMYQLCLIMTIQ 210 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 LS+P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 211 LSAPAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 267 >gi|118133499|gb|ABK60543.1| flagellar biosynthetic protein FlhB [Clostridium novyi NT] Length = 575 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 92/206 (44%), Gaps = 1/206 (0%) Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98 ++ F + +++ + D + + + ++E+ G + G + + +++ G Sbjct: 2 KVMFGVILGFMIITGI-DYSYVNDINSNLMIIMYAIIEISTGVILGFITNICFSCIRYAG 60 Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158 + + +G + + + + T + ++ L+ ++D + + LV+S+ + I Sbjct: 61 AFMDLQVGFAMMSMFDPNANSNTTLIERMLYWFSLIVFIIVDGPNMLIKILVESFKVVHI 120 Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 GQ + +N+ F + +R++ P + I+ ++++GL+ K VPQ+ + + P Sbjct: 121 GQFILNQQSAMHVINVFIKYFQLGIRIAIPIVLIIILTDLTMGLVAKSVPQLNVMILGMP 180 Query: 219 YLIGLGSLFLCLSIEIIVYQFSHSFL 244 I LG L L + +I +F Sbjct: 181 VKIVLGLGVLSLCLPVIFNIIGSAFD 206 >gi|323493114|ref|ZP_08098245.1| putative flagellar biosynthetic protein FliR [Vibrio brasiliensis LMG 20546] gi|323312585|gb|EGA65718.1| putative flagellar biosynthetic protein FliR [Vibrio brasiliensis LMG 20546] Length = 258 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 3/236 (1%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 ++ L+ RVG+ + +P S IP+ VR A++ +V P + + F Sbjct: 7 DLSRLLGQLWWPFFRVGAVFISMPFFGDSLIPVWVRSLLALSIVVVAAPLMPAMPAVDLF 66 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 + + L + G GL++ + G +IS +GL + + ++ Sbjct: 67 SLTSLF--LAFEQAIWGLFFGLILHMLFAIFTTLGQIISMQMGLGMAMMNDPVNGMSVAI 124 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 L + I L ++ H + L++S+ P+G L+F + F VN+ F L Sbjct: 125 LGRIFLIFSTLLFLSLEGHLVILDILIQSFRVWPVGSGLSFAS-FQGVVNLFSWMFASAL 183 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 L+ P + ++ NIS G++N+ P + +Y + P + LG + +SI + ++ Sbjct: 184 ALALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISISGVPSRY 239 >gi|56695094|ref|YP_165441.1| flagellar biosynthetic protein FliR [Ruegeria pomeroyi DSS-3] gi|56676831|gb|AAV93497.1| flagellar biosynthetic protein FliR [Ruegeria pomeroyi DSS-3] Length = 257 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 107/235 (45%), Gaps = 5/235 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + LF + RV + + +LP IPM+VRL + + T N Sbjct: 16 LWQLFAVFLRVSALVSVLPAFGEQSIPMRVRLG---VAAAFAVIVAPATPQAPEITNVLQ 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ L E G V GL IR++ + LQ G + + A L+ +G + + + L+ Sbjct: 73 FAMLAGTEALAGLVMGLGIRLFAMALQVAGMIAAQATSLS--QLLGNAVAEPTPAMGHLL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + GL + H +V L+ SY PIG+ + G++ V + F + L++P Sbjct: 131 MMDGLALAVMSGLHVRVAEFLIHSYTIFPIGKLPHPGDLSQWGVAQIGRMFALAFALAAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 F+ +++N+++G +N+ +PQ+ + F+ P + G L + +++ + + Sbjct: 191 FVIASLIYNLALGAINRAMPQLMVAFVGAPVITFGGMALLLVGTPLLLSVWLDAL 245 >gi|167630309|ref|YP_001680808.1| flagellar biosynthetic protein flir [Heliobacterium modesticaldum Ice1] gi|167593049|gb|ABZ84797.1| flagellar biosynthetic protein flir [Heliobacterium modesticaldum Ice1] Length = 266 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 99/240 (41%), Gaps = 4/240 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L L++ RV ++L P + ++ + +++L + D Y Sbjct: 15 LLLMMIRVAGILVLAPVFNFPGFNNLAKIGLSFMIALILFLSMPDGALPVPPQELFGYVI 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V EL LG G ++++ + G +I +G + + + I+ Sbjct: 75 VVAQELLLGLAIGFILQLLFAAILTAGHLIDIQLGFGIVNIIDPLWGAQVPMTGVFLQIL 134 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIMLRLSS 187 LL + D H + L S+ +P G+I V ++ +I ++L+ Sbjct: 135 ALLIFVIFDGHLLLIQVLADSFRILPAAGSPFSLALAGSISDFIVRLVSGVLLIGVQLAM 194 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ +I++GL+++ VPQ+ ++ I P I +G FL +++ + + F F Sbjct: 195 PIIGIILINDIALGLVSRTVPQMNLFVIGIPLKIIVGVAFLWITLPFYIDGLNRLFTLSF 254 >gi|94986974|ref|YP_594907.1| flagellar biosynthesis pathway, component FliR [Lawsonia intracellularis PHE/MN1-00] gi|94731223|emb|CAJ54586.1| Flagellar biosynthesis pathway, component FliR [Lawsonia intracellularis PHE/MN1-00] Length = 262 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 1/228 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +S L R+ + +LP S+ P ++ A+ +IVL L Q + Sbjct: 10 MFLSFLLTFLRISVVLFMLPFFSIDGFPNMLKASIALILTIVLWGRL-SLSGTQMPAHPF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+FLG V GL + + G+Q G +++T +G + T + Sbjct: 69 DLVLLIISEVFLGIVLGLAVNFFFAGIQAGGEILATQMGFTMITLADPLTGNTTGFIAHF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L ++ H + A ++ +P G + + S +NM F+ L +++ Sbjct: 129 LYMVATLVFLALNGHLFLIKAFTYTFKMVPAGGLVVREILLSELLNMAGMIFVFALHVAA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + + IS+GL+ + PQI I + P IG+G F+ L I+ Sbjct: 189 PVMSALFLVEISLGLMARAAPQIHIMEVGFPVKIGVGFFFIGLLFTIL 236 >gi|329943278|ref|ZP_08292052.1| bacterial export s, 1 family protein [Chlamydophila psittaci Cal10] gi|332287856|ref|YP_004422757.1| putative type III secretion inner membrane protein [Chlamydophila psittaci 6BC] gi|313848428|emb|CBY17432.1| putative type III export protein [Chlamydophila psittaci RD1] gi|325507239|gb|ADZ18877.1| putative type III secretion inner membrane protein [Chlamydophila psittaci 6BC] gi|328814825|gb|EGF84815.1| bacterial export s, 1 family protein [Chlamydophila psittaci Cal10] gi|328915118|gb|AEB55951.1| flagellar biosynthetic protein FliR, putative [Chlamydophila psittaci 6BC] Length = 289 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 104/227 (45%), Gaps = 7/227 (3%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 ++P L P +++ A+++ ++ P + + + N+++ + L++ E+ +G Sbjct: 42 IFAIVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHIANYLDDDMFYILIVKEICIGT 101 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + G ++ Q GS I+ G+ L+ + + +P + W+ Sbjct: 102 LIGFILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLSG 161 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGN------IFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 H V L++S IPI + L I+ + + M Q ++ ++LS+P + Sbjct: 162 GHRIVLTILLQSLEVIPIHKFLPMEMMSLDAPIWVALIKMCQLCLIMTIQLSAPAAVAML 221 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 222 MSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 268 >gi|260779325|ref|ZP_05888217.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC BAA-450] gi|260605489|gb|EEX31784.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC BAA-450] Length = 258 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 102/233 (43%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ L+ R+G+ + +P S IP+ VR A++ ++ P + ++ F + Sbjct: 11 VLGQLWWPFFRIGAVFISMPFFGDSLIPVWVRSLLALSIVMISAPLMPPMPAVEFFSMTS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + G GL++ + G ++S +GL + + ++ L + Sbjct: 71 LF--LAFEQAIWGLFFGLILHMLFTIFTTLGQIVSMQMGLGMAMMNDPVNGMSVAILGRI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I L ++ H + L++S+ P+G L + VN+ F L L+ Sbjct: 129 FLIFCTLLFLSLEGHLVMLDVLIQSFVVWPVGSGLTSAS-LQGIVNLFSWMFASALALAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 188 PAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYT 240 >gi|296531765|ref|ZP_06894587.1| flagellar biosynthesis protein [Roseomonas cervicalis ATCC 49957] gi|296267904|gb|EFH13709.1| flagellar biosynthesis protein [Roseomonas cervicalis ATCC 49957] Length = 253 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L L+ R+ + ++LLPG + +P ++R+ A+ + Sbjct: 15 LYRLLLVFGRISAALLLLPGFGETTLPARIRILAALLIAFC---LAPLAGPAPAPPGAFG 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + +++E+ G G L R+ +Q G +I IG++ + GI + L S++ Sbjct: 72 MAAALVLEIAAGAFLGTLSRMMLSAVQVAGQIIGQCIGISNAFAFGI-GADNAAILGSML 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L+AL+ +D HH AL SY +P+G L + + F + ++LS P Sbjct: 131 YAAVLVALFAMDGHHVGLRALADSYRLLPLGDPLPAAASARAVTELAAGAFRLAMQLSMP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 FL ++FN ++ +N+ +P +P++ I P ++ G L + ++ + ++ F Sbjct: 191 FLVLSVLFNAALAGINRALPAMPVFLIGAPAILLTGLSLLAQAAPTLLGEMLGAYASAF 249 >gi|91795013|ref|YP_564664.1| flagellar biosynthetic protein FliR [Shewanella denitrificans OS217] gi|91717015|gb|ABE56941.1| flagellar biosynthetic protein FliR [Shewanella denitrificans OS217] Length = 259 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 3/237 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SL+ CR+ M++P L +Y+P+ VR+ +++ ++++ + + A Y Sbjct: 15 SLWWPFCRIMGAFMIMPLLGNAYVPVTVRILLSLSIAVLISHLIPSVPPVDALSLSAVY- 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + +L +G + G ++ + + G+++S +GL + + A L+ + Sbjct: 74 -LAIEQLLIGVMLGFILYLLLHVMTLLGTIMSMQMGLAIAIMNDPATGDANPILSQWFLL 132 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 G L +D H LV S+ PIG +L + FV+ + F L L+ P + Sbjct: 133 FGTLIFLALDGHLVAIGVLVDSFRLWPIGSDLFSLPLL-GFVHRVGWLFAAALMLALPAV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ NI+ G+L++ P + I+ + P + +G L + LS+ + ++S L Sbjct: 192 LAMLMVNITFGVLSRSAPSLNIFSLGFPMTMLMGLLCVLLSLSGVPERYSDLCLEAL 248 >gi|46581636|ref|YP_012444.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str. Hildenborough] gi|120601205|ref|YP_965605.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris DP4] gi|46451059|gb|AAS97704.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str. Hildenborough] gi|120561434|gb|ABM27178.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris DP4] gi|311235278|gb|ADP88132.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris RCH1] Length = 263 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 102/237 (43%), Gaps = 2/237 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + L RV + LLP +PMQV++ + ++ L P L + + Sbjct: 12 LGFLLTFMRVSLVMFLLPFFGGDAVPMQVKVALCLVMAMALWPRLSLAGAVMP-SHPFEL 70 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ EL LG V G+ + G+Q G ++ +G + + + + + Sbjct: 71 VVMLASELVLGLVLGMAVHFLFAGIQTGGQLLGFQMGFTMISIADPLSGAQISITSHFLY 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ LL +D H + A +S+ +P G + + + V + F+I +++++P Sbjct: 131 MVSLLTFLALDGHLFLLRAFAESFALVPAGGLVANPAVANELVRLAGGMFVIAVKIAAPV 190 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 L + +++ L+ + PQ+ + I P I +G F+ L I+ Q+ F+ G Sbjct: 191 LVTLFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFMGLLFT-ILAQYIEEFIIG 246 >gi|218887106|ref|YP_002436427.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758060|gb|ACL08959.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 264 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 103/233 (44%), Gaps = 1/233 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M+S L RV + LLP P QV+ + F++ L P + Q + Sbjct: 11 MLSFLLTFMRVSLVLFLLPFFGGEAAPTQVKAALCLVFTLALWPHV-SLPGGQMPTHPFS 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ EL +G + G+ + G+Q G V++T +G + T + + + Sbjct: 70 LIVLLAGELIMGLMLGMTVHFLFAGIQTGGQVLATQMGFTMITLADPLTGANVSITSHFL 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ +L+ V+D H + A V+++ +P G L + + + + F++ +++++P Sbjct: 130 YMVAMLSFLVLDGHLYMLRAFVRTFELVPAGGLLLTPMLVKEVLALSGSMFVLAVKIAAP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L + +++ L+ + PQ+ + I P I +G F+ + I+ + Sbjct: 190 VLVSLFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFIGMLFTIMADKIRE 242 >gi|29840695|ref|NP_829801.1| type III secretion inner membrane protein SctT [Chlamydophila caviae GPIC] gi|29835045|gb|AAP05679.1| type III secretion inner membrane protein SctT [Chlamydophila caviae GPIC] Length = 289 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 103/227 (45%), Gaps = 7/227 (3%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 ++P L P +++ A+++ ++ P + + N+++ + L++ EL +G Sbjct: 42 VFAIVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMNTHIANYLDDDMFYILIVKELCIGT 101 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + G ++ Q GS I+ G+ L+ + + +P + W+ Sbjct: 102 LIGFILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLSG 161 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGN------IFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 H V L++S IPI + L I+ + + M Q ++ ++LS+P + Sbjct: 162 GHRIVLTILLQSLEIIPIHKFLPMEMMSLDAPIWITLIKMCQLCLIMTIQLSAPAAVAML 221 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ +G++N++ PQ+ + ++ + +G LFL LS IV Q + Sbjct: 222 MSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLSWWFIVKQIDY 268 >gi|315126007|ref|YP_004068010.1| flagellar biosynthetic protein FliR [Pseudoalteromonas sp. SM9913] gi|315014521|gb|ADT67859.1| putative flagellar biosynthetic protein FliR [Pseudoalteromonas sp. SM9913] Length = 259 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 101/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M +L+ R + + +P + + R+ +M + ++ P L + F A Sbjct: 15 WMGTLWWPFVRFSALLWSMPVFDNPAVTPRSRILVSMMLAFLVAPQLPLAPAIDLFSLDA 74 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L ++ G + GL +R+ + G ++S +GL++ M L L Sbjct: 75 --AILTFEQIIFGVMMGLSLRILFEVMAMIGLILSMQMGLSMALVMDPGSGNQVALLGQL 132 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L + +D H +V+S+ + PIG+ + +I S + + F L LS Sbjct: 133 FWIMCALLFFAVDGHLITLQVMVESFHSFPIGRSIYEFDI-QSIIMLFAWMFSSALLLSL 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ N++ G+ ++ P + I+ + P + +G + +++E FS Sbjct: 192 PGIVAMLLVNLTFGVASRAAPSLNIFVLGFPMSLLMGFFCVFMTLEYTGSAFSRL 246 >gi|218699489|ref|YP_002407118.1| flagellar export pore protein [Escherichia coli IAI39] gi|218369475|emb|CAR17240.1| flagellar export pore protein [Escherichia coli IAI39] Length = 239 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 3/229 (1%) Query: 19 VGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78 + + I P LS +P +V+L AM + + P L V + L + ++ Sbjct: 1 MLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSFFALWLAVQQIL 57 Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138 +G G ++ ++ G +I +GL+ T + S L L ++ ++ LL Sbjct: 58 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPSSHLNMPVLARIMDMLALLLFLT 117 Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 + H + LV ++ T PIG E N F + F+ L L+ P + + N+ Sbjct: 118 FNGHLWLISLLVDTFHTQPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 177 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 178 ALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 226 >gi|34498460|ref|NP_902675.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC 12472] gi|34104315|gb|AAQ60674.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC 12472] Length = 259 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 101/229 (44%), Gaps = 3/229 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 +++ CR+ + + P + + +PM+ R+ A+A ++ +P + + F + Sbjct: 14 AVWWPFCRLMAAFAIAPFIGDAVVPMRARVGLALALAVACIPGMPAHSPIDPFTLHGVAA 73 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + ++ +G + GL ++ L G ++S+ +GL++ + + ++SL+ + Sbjct: 74 S--VEQVVIGLLFGLAFQLTLSVLALLGFLLSSQMGLSMAIMNDPGNGNSSDVVSSLLYL 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + L + +D H + + S+ P+G + + + L+ P + Sbjct: 132 LAALLFFAMDGHLVLVQVVYASFRAWPLGGGIP-QASLPVLAASVGWVMSAAMILALPVV 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 F V G++N++ P + ++ + P + G L L ++++ Q+ Sbjct: 191 FATFVVQAGFGMINRVAPALNLFSLGFPVVTLFGLSTLTLLMQVLPPQY 239 >gi|282891199|ref|ZP_06299702.1| putative type III secretion inner membrane protein SctT [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498892|gb|EFB41208.1| putative type III secretion inner membrane protein SctT [Parachlamydia acanthamoebae str. Hall's coccus] Length = 285 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 101/240 (42%), Gaps = 7/240 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ L + R+ I P L +P V++ A++ ++ P + + Sbjct: 24 EGVLTIFLLFLARMFPIIAQSPFLGARVLPHPVKVSLAISLFVIFFPQML-LLTTTPIGF 82 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L+ E+ +G + G +I + +Q G +I G + +P+ Sbjct: 83 NFNALLLLFKEILIGFILGFIISIPFSIVQNAGMIIDHQRGGASLMVNDPTIQNQSSPVG 142 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTF 179 +L+ ++ + WV+D A+ SY +P Q +N + + +L Sbjct: 143 TLLNMVLIFLFWVVDIPFLFIDAIFTSYEIVPPDQFINPNFFDAASPFRKTQIELLNKVM 202 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ ++L++P L ++ ++ +G++N+L PQ+ I F+ P LG +C ++ Q Sbjct: 203 VVSIQLATPALLAILMTDVFLGIVNRLAPQVQITFLGMPLKSLLGLGVICFGWNLLTTQM 262 >gi|330443948|ref|YP_004376934.1| YopT tranlocation T [Chlamydophila pecorum E58] gi|328807058|gb|AEB41231.1| YopT tranlocation T [Chlamydophila pecorum E58] Length = 289 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 102/227 (44%), Gaps = 7/227 (3%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 ++P L P +++ +++ ++ P + + N+ N + L++ E+ +G Sbjct: 42 IFSIVPFLGAKLFPSPIKIGIGLSWLAIIFPKVLMDTRIANYTNEDLFYILLIKEMIIGI 101 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G ++ Q GS I+ G+ L+ S +P +A W + Sbjct: 102 VIGFILAFPFYAAQSAGSFITNQQGIQGLEGSTSPISIEQTSPHGIFYHYFVTIAFWSLG 161 Query: 141 FHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 H +F L++S IPI I+S+ + + Q + ++ ++LS+P + Sbjct: 162 GHRIIFSLLLQSLEVIPIHNFFPPQLMSLHAPIWSTLIKICQLSLIMTIQLSAPAALAML 221 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + Sbjct: 222 MSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDY 268 >gi|34556637|ref|NP_906452.1| flagellar biosynthesis protein FliR [Wolinella succinogenes DSM 1740] gi|34482351|emb|CAE09352.1| FLAGELLAR BIOSYNTHETIC PROTEIN FLIR [Wolinella succinogenes] Length = 255 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 99/242 (40%), Gaps = 3/242 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + L++ R + P I ++ +I+ P + V+ Sbjct: 9 EGNVTAFLLLLLRFSGVMFFFPFFENQLISTSIKGALIFFLTILFFPVVPLQSPPTQIVD 68 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + EL LG + +++++ + F G V S A+GL + ++ + + Sbjct: 69 ---FMLAGLSELMLGFLASVVLQIVFGMISFGGEVTSFAMGLTMASAYDPVTGAQKPIIG 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 LI ++ LL + +D HH F + +S IP+G + +I S + F+I + Sbjct: 126 QLITLLALLVMLALDLHHPFFLFIAESLRHIPLGGFVFSPDIASYTLKAFANLFLIGFTM 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P + ++ +I G++ K PQ + I P I + L + + I+ F F+ Sbjct: 186 AFPIVALILLSDIIFGMIGKAHPQFNLLVIGFPVKIAIAFAVLIVILPAILIHFKREFIL 245 Query: 246 GF 247 Sbjct: 246 AL 247 >gi|260574395|ref|ZP_05842399.1| type III secretion system inner membrane R protein [Rhodobacter sp. SW2] gi|259023291|gb|EEW26583.1| type III secretion system inner membrane R protein [Rhodobacter sp. SW2] Length = 259 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 117/237 (49%), Gaps = 6/237 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + FL++ RVG+ + LLP +P++VRL A+AF+ ++ P + + Sbjct: 18 LLWTGFLVLLRVGAAMALLPAFGEQSVPVRVRLVLALAFTAIVAPAVATEV----VPLAG 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + E+ G + G+ +R++ LQ G++ + A L+ + + + + +L Sbjct: 74 SIALPLATEVMAGLIIGIGLRLFIHALQIAGAIAAQAASLS--QLFAGAGAEPQPAIGNL 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + GL + H ++ ++SY P G+ N ++ + + F + L+S Sbjct: 132 LTMAGLALAVMAGLHVRMAELFIQSYQVFPAGRLPNSADLADWGLFQIGRVFSLGFVLAS 191 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 PF+ +++N+++G++N+ +PQ+ + F+ P L G L + + + +S +F Sbjct: 192 PFVIASLIYNVALGIINRAMPQLMVAFVGAPALTLGGLALLAIVTPLGLMLWSQAFD 248 >gi|222100639|ref|YP_002535207.1| Flagellar biosynthetic protein fliR [Thermotoga neapolitana DSM 4359] gi|221573029|gb|ACM23841.1| Flagellar biosynthetic protein fliR [Thermotoga neapolitana DSM 4359] Length = 256 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 94/231 (40%), Gaps = 3/231 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ + R ++ P S P+ V++ A+ S + L ++ L V Sbjct: 9 EEKFLAWMCLFTRFTGFFVIAPFFSERAFPVVVKVFLALFTSWLTLYSSNMSLPLDTPVL 68 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + L +G G ++ ++ G + +G ++ + + P Sbjct: 69 TLTLNLLFN--FLVGFSLGFIVYLFLQAFNGAGYIFGFQMGFGMEEVLAFGE-EQTNPTG 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 LI ++GL +I +F L S P+ + FS V F+++L++ Sbjct: 126 ELIYLLGLTVFVLIKGPLLIFEGLKDSLEVFPVNLVNLKEDFFSYIVQRSDEFFVMILKI 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + F + +I +G++++L+PQ+ ++ + P + +G + + + I Sbjct: 186 GIPIIAFMFIVSIVLGIVSRLIPQMNVFMVGLPLKVMIGFVLIAGMLPIWA 236 >gi|260893862|ref|YP_003239959.1| type III secretion system inner membrane R protein [Ammonifex degensii KC4] gi|260866003|gb|ACX53109.1| type III secretion system inner membrane R protein [Ammonifex degensii KC4] Length = 255 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 3/207 (1%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + R+ + P L++ +P+ RL AM+ S+ + P L ++ Sbjct: 15 VWARLLGFTLAFPPLALPGLPVLWRLGVAMSLSLFVTPLLPPDRPFSG--GAWEWALTWA 72 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E LG G + + L+ G ++ +G + + + ET L ++G + Sbjct: 73 GEFTLGLGMGFVAGLVFQALRVAGQLMGLQMGFGMAELL-TLGGVPETMLAEFFFLLGTV 131 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + D + + ALV+SY +P+G G V ++ L+L++P L + Sbjct: 132 LFFTTDAYQYLIEALVRSYEVLPLGGAAVKGGAIWLTVKLVGGMLATALQLAAPVLAVTV 191 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLI 221 + + S+GLL ++VPQI ++ + P I Sbjct: 192 LIDASLGLLVRMVPQINVFMLGFPLKI 218 >gi|225871938|ref|YP_002753392.1| flagellar biosynthetic protein FliR [Acidobacterium capsulatum ATCC 51196] gi|225793704|gb|ACO33794.1| flagellar biosynthetic protein FliR [Acidobacterium capsulatum ATCC 51196] Length = 260 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 104/236 (44%), Gaps = 4/236 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L L++ RV ++ P S + IP QV+ F +A ++ L P + + Sbjct: 12 LSALVLVMLRVSGLMLFAPVFSSTAIPPQVKAVFTLAVTVCLAPVVAGLPHADARLGP-- 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ EL +G + G+ +R+ L F G ++ A +L + + + + Sbjct: 70 --QEILSELAVGLLFGICLRMLMEMLTFAGDLLGIAFSFSLVNLLDPNAPVQVPLMGQFF 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++G L L + AL++++ +P+G + + M F+ L+L++P Sbjct: 128 SLLGTLVLLSTGLDRTMIAALMRTFAVVPVGSFVLSAKTAWAVAEMGTGLFLAALQLAAP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + ++ + ++GL +L PQ+P ++ P LG + L S+ + F Sbjct: 188 VMVATMLVDFAVGLAARLSPQLPALSLTVPVKTMLGFVVLIGSLALWPEFIEARFD 243 >gi|57505424|ref|ZP_00371352.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis RM3195] gi|57016249|gb|EAL53035.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis RM3195] Length = 255 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 100/239 (41%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + L+ R+ I+ P S + IPM V+ ++ L P L+ ++ Sbjct: 12 VATFMLLFARLSGLIVFFPFFSHNSIPMVVKTTIVFFLTMFLYPLA----KLEALHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL+I+ + + G I+ +G + + + S + + ++ Sbjct: 68 FILQLLSEVLFGMIAGLIIQFIFVIIMMAGEQIAFTMGFTMASVLDPSSGINMPVTSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ LL D HH + L +S I +G N + + + F+I ++ P Sbjct: 128 NLLALLFFLAFDGHHLMLLFLSQSLTYINLGGFYPSENFMQYLNSGMLSVFVIGFTMAFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ G+L K +PQ + I P I L + L + I++ F F Sbjct: 188 ILAISLLADVIFGILMKTMPQFNLLVIGYPIKIALAFVVLIAILLIMMEYFKELIEEVF 246 >gi|62185509|ref|YP_220294.1| putative type III export protein [Chlamydophila abortus S26/3] gi|62148576|emb|CAH64348.1| putative type III export protein [Chlamydophila abortus S26/3] Length = 289 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 103/227 (45%), Gaps = 7/227 (3%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 ++P L P +++ A+++ ++ P + + + N+++ + L++ E+ +G Sbjct: 42 IFAIVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHVANYLDDDVFYILIIKEICIGT 101 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + ++ Q GS I+ G+ L+ + + +P + W+ Sbjct: 102 LISFILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLSG 161 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGN------IFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 H V L++S IPI + L I+ + + M Q ++ ++LS+P + Sbjct: 162 GHRIVLTILLQSLEVIPIHKFLPMEMMSLDAPIWITLIKMCQLCLIMTIQLSAPAAVAML 221 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + Sbjct: 222 MSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDY 268 >gi|295696130|ref|YP_003589368.1| flagellar biosynthetic protein FliR [Bacillus tusciae DSM 2912] gi|295411732|gb|ADG06224.1| flagellar biosynthetic protein FliR [Bacillus tusciae DSM 2912] Length = 263 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 95/234 (40%), Gaps = 1/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VNRA 67 + LI+ R+ +M +P S +P V++ A ++++ + + + Sbjct: 11 VQVWLLILARIIGWVMTVPVFSSRAVPAPVQMGLAGVVALLVAQAVIPAQGAAVAGLALS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y V+ + +G G + V + G +I +G ++ T + L + Sbjct: 71 AYLFEVVKQWLIGAAIGFIASVLFTAAEMAGQLIDIQMGFSMVTLFNPQFGTNGSILANW 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + ID H + AL+ S+ I +G + G + + F++ ++L++ Sbjct: 131 QMWLTSVVFLGIDGHLAMLSALLHSFEWIHLGAGIPVGPVAEVVARSVAVLFILGVQLAA 190 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P L ++ ++ + +++ PQ + F++ P I G ++ +++ Sbjct: 191 PLLLTLLLIDVILAFVSRAAPQTNLLFVALPGKILAGWGVALGTLPVLILGIER 244 >gi|260767958|ref|ZP_05876892.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] gi|260615988|gb|EEX41173.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972] Length = 258 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 98/232 (42%), Gaps = 3/232 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L+ R+G+ + +P IP+ VR A++ +++ P + + + Sbjct: 11 WLGQLWWPFFRIGAVFVSMPFFGDLLIPVWVRSLLALSITVITAPLMPAMPAVDLMSMTS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + G + GL++ + G ++S +GL + + L+ L + Sbjct: 71 LF--LAFEQAVWGLMFGLILHMLFTVFTLLGQIVSLQMGLGMAMMNDPVNGLSVAILGRI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L ++ H V L++S+ P+G + V++ F L L+ Sbjct: 129 FLVFTTLLFLALEGHLVVIDVLIQSFTVWPVGSGITM-LSLQGIVHIFSWMFSAALALAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + ++ Sbjct: 188 PAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRY 239 >gi|149195094|ref|ZP_01872186.1| Flagellar biosynthesis protein FliR [Caminibacter mediatlanticus TB-2] gi|149134807|gb|EDM23291.1| Flagellar biosynthesis protein FliR [Caminibacter mediatlanticus TB-2] Length = 254 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 3/246 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 T+ ++ +++ L+ R+ S + LP + IPM V+ ++ SI+ P + + Sbjct: 4 TLLSDVNVVTFLLLFIRISSFLSFLPFFNYMNIPMNVKAALSIWLSILFFPIV---PKVN 60 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 +N + E+ G+ +++ L+F IS +G + + + Sbjct: 61 FEINLINILLAIFNEIAFAFFVGMALQLIFDILKFAAEQISFVMGFTMANVIDPNFGGQS 120 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 T L+ I +L H L K +P G N+ I+ F+ + FMI Sbjct: 121 TILSQFFIWIAILVFLTFGGDHLEILLLSKFMSNLPFGAFFNYHKIYEYFLVYMGKYFMI 180 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + L+ P + ++ +I G++ K +PQ + + P I + + L + ++ FS Sbjct: 181 GVGLAFPIIAISLMSDIIFGMIMKTMPQFNLLVVGFPIKIFVSFIVLMAILSSMMLVFSR 240 Query: 242 SFLYGF 247 F Sbjct: 241 EIKEVF 246 >gi|332669211|ref|YP_004452219.1| flagellar biosynthetic protein FliR [Cellulomonas fimi ATCC 484] gi|332338249|gb|AEE44832.1| flagellar biosynthetic protein FliR [Cellulomonas fimi ATCC 484] Length = 255 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 98/241 (40%), Gaps = 4/241 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 P + + L R+ + +++ P S +P V++ A+ ++ + P L + Sbjct: 6 ITLPVQAVETTMLASVRMAAFLVIAPPFSQRAVPPFVKVALALGLALAVAPRL----EPV 61 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 + ++ + +G G L+ + +Q GS+I G L T+ + Sbjct: 62 PSDTTPAFVGALVAQAVIGAGLGFLVSLVFSAVQSAGSLIDLFGGFQLATAYDPLSQTSG 121 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 L + L+ L+ D + V LV+++ +P+G L+ + S+ L F+ Sbjct: 122 AQFGRLYQMTALVLLFASDAYQVVVAGLVRTFDALPLGALLDPAALASTLTEGLTQMFLA 181 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L+++ P L + ++ +GLL ++ P + + + P I L F L+ + Sbjct: 182 ALQIAGPLLVVLFLADVGLGLLTRVSPALNAFAMGFPLKILLTLSFGSLAFLALPGVVES 241 Query: 242 S 242 Sbjct: 242 L 242 >gi|283850713|ref|ZP_06368000.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. FW1012B] gi|283573956|gb|EFC21929.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. FW1012B] Length = 259 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 102/229 (44%), Gaps = 1/229 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ S L + R+ + LLP + +P V+ + ++ + P L L N Sbjct: 10 LVFSFLLTLMRISVVLFLLPFFGANLLPNPVKGALCLLLTLAVFPMLSFPAALMP-ANPW 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + + E+ +G + +L+ +Q G+++ ++G +L S+ +E+ L L Sbjct: 69 TLALMFLGEVIMGLLLDILVMFLFSAVQCAGAIMGFSMGFSLMNSIDPMTGASESGLGHL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + ++ H + + +S+ +P G + + F++ L++++ Sbjct: 129 MNQVTTMLFLCLNGHLFLLDCMAQSFTLVPPGGLFLSPALGEHLIAFSGQIFVMALKIAA 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + ++++ L+ + PQ+ + FI P I +G LF+ L + Sbjct: 189 PIMASIFMVDLALALVARAAPQMNVLFIGFPLKISVGFLFMTLVFGALA 237 >gi|313681367|ref|YP_004059105.1| flagellar biosynthetic protein flir [Sulfuricurvum kujiense DSM 16994] gi|313154227|gb|ADR32905.1| flagellar biosynthetic protein FliR [Sulfuricurvum kujiense DSM 16994] Length = 254 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 106/243 (43%), Gaps = 3/243 (1%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 E ++ L+ R G+ M +P S IP+ ++ A F++ + L Sbjct: 8 SEGRTIAFILLFIRFGALFMAVPIFSHMNIPISIKAAMAFFFTVFFFGAV---PPLHIPT 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + ++ E+ G G+++++ + F G IS +G +L +++ ++ + Sbjct: 65 DTLSLTVAILGEMLFGLAVGIVLQLAYHVITFAGGQISFMMGFSLASAIDPQSGVSMPII 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + + ++ L+ L + D HH + +S T+P+G L ++F ++ + F++ Sbjct: 125 SQFLSLLALMILLIFDLHHWILLYASQSISTVPLGGFLMTPSLFKYIMHAMTNMFVVGFM 184 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ P ++ ++ G+L K +PQ + I P I + + L ++ + + Sbjct: 185 IAFPITALSMLADLIFGMLMKTMPQFNLLVIGMPIKIAVSFVVLMATLGATLMIVTSQTQ 244 Query: 245 YGF 247 + Sbjct: 245 NAY 247 >gi|117923328|ref|YP_863945.1| flagellar biosynthetic protein FliR [Magnetococcus sp. MC-1] gi|117607084|gb|ABK42539.1| flagellar biosynthetic protein FliR [Magnetococcus sp. MC-1] Length = 266 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 111/234 (47%), Gaps = 2/234 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + LI+ R+ + P S + P ++R+ + +IV+ P + + Sbjct: 20 MVLIMSRLSGLFLAAPFFSRNVGPKRIRVILLLWITIVIYPIVPPW-PGEGNGEVIRMVF 78 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +VE +G + G++ + +Q G++I +GL++ M + + E L +L+ + Sbjct: 79 TGVVEFSMGIMIGMIAHWVLVSVQIAGTMIGFEMGLSMAMVMDPTSGVQEGVLANLLYLF 138 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFL 190 GL+ +++ HH + L +S+ ++P+G L G + V + F + L L++P + Sbjct: 139 GLMLFLLLNGHHWLLEGLARSFVSMPLGSPLPHGEPMITIVLQGIVHMFELALLLAAPVV 198 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + +GL+N+ PQI ++F++ P +G L + L++ I + + Sbjct: 199 AAAKLLYLGMGLINRASPQIQVFFLAMPVAQLMGFLIMGLTLSIFGQRLTREME 252 >gi|256376455|ref|YP_003100115.1| type III secretion system inner membrane R protein [Actinosynnema mirum DSM 43827] gi|255920758|gb|ACU36269.1| type III secretion system inner membrane R protein [Actinosynnema mirum DSM 43827] Length = 256 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 3/229 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++L L R + +M+ P + IPM V+ A+ ++ ++P L ++ Sbjct: 9 VLVALLLAATRSAAWLMVCPPFNGKAIPMTVKGMLAVGLALPVVPRLSAGS--VPSLDTW 66 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-SLAETPLNS 126 ++ +G G L V G+Q G ++ G +L + S L Sbjct: 67 SLVIAAGEQVVVGAGLGFLTAVIFAGVQAAGDLLDVFGGFSLAFAFDPMSFSGNNAVLGR 126 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 G++ L+V H + SY IP+ L+ G + + L + +++ Sbjct: 127 FYGLLATTLLFVTGSHQVIIRGFTLSYDAIPLDGGLSLGRLGTLLTTGLGQLLLSAAQIA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + ++ +GLLN++ P + + I P IGL + + L++ ++ Sbjct: 187 GPLIVVLFCADVGLGLLNRIAPALNPFQIGFPAKIGLTLVLVGLTMPML 235 >gi|110677563|ref|YP_680570.1| flagellar biosynthetic protein FliR [Roseobacter denitrificans OCh 114] gi|109453679|gb|ABG29884.1| flagellar biosynthetic protein FliR [Roseobacter denitrificans OCh 114] Length = 256 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 112/233 (48%), Gaps = 5/233 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F++ CRV + +LP + +V+L A+AF++++ P L + + S + Sbjct: 19 FVVFCRVAALAAVLPAFGEQTLSARVKLAAALAFTVIVAPALPI---IPAPGSIGAVSFV 75 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E+ G G+ +R++ L LQ GS+ + + L+ +G + + ++ I G Sbjct: 76 ILTEVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLS--QVLGGAAVDPLPAMGYILVIAG 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L + H +V ++ SY +P+G+ N ++ + + F + L++PF+ Sbjct: 134 LALAVMAGLHVKVAQLIILSYDFMPVGRFANAADLSEWGTSQVAHAFSLAFTLAAPFVIL 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 +++N ++G +N+ +PQ+ + F+ P + G L +S ++ + + Sbjct: 194 SVLYNFALGAINRAMPQLMVAFVGAPVITLGGLALLLISAPYMLTVWLGAMDR 246 >gi|37525859|ref|NP_929203.1| flagellar biosynthesis protein FliR [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785288|emb|CAE14229.1| Flagellar biosynthetic protein FliR [Photorhabdus luminescens subsp. laumondii TTO1] Length = 260 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 F + RV + P S P +V++ A+ +++L+P L Q + Sbjct: 16 FFWPLVRVLALFSTAPLFSEKQAPKKVKIGLAVMVTLLLMPNLQP---AQVPIFSVTAFW 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ ++ +G GL +++ +++ G VI +GL+ T S L + ++ Sbjct: 73 VMLQQILIGASLGLTMQIAFAAVRYAGEVIGLQMGLSFATFFDPSGGPNMPILARIFNLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL D H + L ++ +PI F F+ + L+ P + Sbjct: 133 TLLLFLAFDGHLWLLSVLADTFQILPIQPLQLSAQGFLLLAQSASMIFINGMMLALPLIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N+S+G+LN++ PQ+ I+ + P + G L L L I ++ F F Sbjct: 193 LLLTLNLSLGILNRMTPQLSIFVVGFPLTLTTGILVLTLLIPMLAPFTERMFSELF 248 >gi|317133471|ref|YP_004092785.1| flagellar biosynthetic protein FliR [Ethanoligenens harbinense YUAN-3] gi|315471450|gb|ADU28054.1| flagellar biosynthetic protein FliR [Ethanoligenens harbinense YUAN-3] Length = 256 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 98/242 (40%), Gaps = 2/242 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 MTI+ + + L+ RV ++ P + +P +++ F++ + +++P L Sbjct: 1 MTITTGLNIDLFLLVFLRVTGMMLFNPIFGRTSVPAILKVGFSLLTAFLIVPTLHGVQ-- 58 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + ++E +G G+L+ + G I +GL++ S + Sbjct: 59 VQMSGPVNFIVAGLLEFSIGFGIGVLVNQMFGIVAIAGEYIDMQLGLSMAQIYDPSMGAS 118 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + S ++ LL + + H +F L S+ + G VNM Sbjct: 119 MPVVGSFYNLVLLLVFFAGNAHLSLFAMLADSFHVVAPGAAGITPGAAQFVVNMGGDMLE 178 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + LR++ P + ++ ++IGL+ + VP I I+ +G + L +++ + V + Sbjct: 179 MGLRMAIPIIAVELICVVAIGLIMRAVPSINIFAFGIQIQAIVGIVVLLVAVPVTVSMCN 238 Query: 241 HS 242 Sbjct: 239 GL 240 >gi|266621913|ref|ZP_06114848.1| putative flagellar protein [Clostridium hathewayi DSM 13479] gi|288866386|gb|EFC98684.1| putative flagellar protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 1/205 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+G I + P + IP V+ + S+V+ P + ++ Sbjct: 12 FLLVFARMGGLIFVHPVFARRGIPAMVKTGLVLTLSLVIAPTAVQGSAAIQAYSTFQMAE 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +M E+ +G V G + +++ + G ++ T GL++ M + + L I + Sbjct: 72 ALMREVIMGLVIGSVFQLFFYMIYAAGDLMDTVFGLSMGKIMDPAGGVQTAILGQFIHVF 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 L + H +Y IP+G L +I V++ + F+++++L+ PF+ Sbjct: 132 FFLYFFATGCHLLTVKLFAYTYEVIPVGAARLVTQDIAWYLVSIFGSVFLMVIKLALPFV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFI 215 V +S+G+L KL+PQI ++ I Sbjct: 192 AAEFVLEVSMGVLMKLIPQIHVFVI 216 >gi|315453852|ref|YP_004074122.1| flagellar biosynthetic protein [Helicobacter felis ATCC 49179] gi|315132904|emb|CBY83532.1| flagellar biosynthetic protein [Helicobacter felis ATCC 49179] Length = 255 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 97/239 (40%), Gaps = 3/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L+ R+ + P + +P+ VR ++V P + +N Sbjct: 13 ITGFWLLFVRIAGVLAFFPFFDNNLVPLSVRGALGFFLTLVFYPTIPH---APLHLNTEG 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ EL LG + + L F IS ++GL + ++ + + ++ Sbjct: 70 FLIALLSELLLGLCASFFLHLVFSTLAFATDTISFSMGLTMASAYDPISGAQKAIVGQVV 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ +L + HH + + S +P+G + ++ + V F I ++ P Sbjct: 130 LLLAILIMLQTSIHHFIILWVQHSLAKVPLGSFVFSADVVKASVKAFAYLFSIGFSMAFP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ G++ K PQ + I P I + + L + + ++++F + L F Sbjct: 190 ILAIIMLSDVVFGMIMKTHPQFNLLAIGFPLKIAIALMGLIMILGSMMHRFKDTLLQAF 248 >gi|152965634|ref|YP_001361418.1| flagellar biosynthetic protein FliR [Kineococcus radiotolerans SRS30216] gi|151360151|gb|ABS03154.1| flagellar biosynthetic protein FliR [Kineococcus radiotolerans SRS30216] Length = 274 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 81/225 (36%), Gaps = 3/225 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R + +ML P + + QV+ ++ + + L D++ V Sbjct: 20 VRSAAFLMLAPPFANKAVNGQVKALLSVGLGLAVAERLRDSVPAVEPGALITAVVQQAVV 79 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 V G + + +Q G ++ G + ++ L L Sbjct: 80 GA---VMGAFVALVFAAVQAAGDMLDLFGGFQMASAYDPLMQSQTAVFGKLYTWTSTALL 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 V H + ++SY +P+ L+ G + F + + +++++P + + Sbjct: 137 VVSGGHLLILQGFLRSYDVLPLDAGLDTGTVARVFTEGVAQLVISAVQIAAPLIAVLFLT 196 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 +I +GLL+++ P + ++ +S P I + + ++ Sbjct: 197 DIGLGLLSRVAPALNVFAMSFPVKILITLTLAGFAFSMLPGVVDD 241 >gi|225159016|ref|ZP_03725326.1| type III secretion system inner membrane R protein [Opitutaceae bacterium TAV2] gi|224802395|gb|EEG20657.1| type III secretion system inner membrane R protein [Opitutaceae bacterium TAV2] Length = 252 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 92/240 (38%), Gaps = 2/240 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 P ++ L R +MLLP +P +R+ A F +L + + Sbjct: 2 PVEWLLVWTLTGLRALGVVMLLPVPGGKVLPAMLRVACAFMFPTLLAGII-PHAPMPEPP 60 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + ++ + E+ LG G + R+ G + G +I+ +GL + E PL Sbjct: 61 GWPWLAEAAVREMVLGLALGFVGRLVFAGAELAGRLIANELGLVAAPGFDVPTPSQE-PL 119 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + IG L +++ H A V+S+ P G + +R Sbjct: 120 PAFIGSFAGLMFFLMGGHEGALAAFVRSFDFAPAGAARFSVLAGETLTICTAQVIEFGMR 179 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +++PF+ V +++ +L + VP++ ++ IS P +G L + + + Sbjct: 180 MAAPFIALNFVISLAFSILGRAVPRMNVFIISYPVRTLVGLSLLAGAGGLFGRYLWRAMD 239 >gi|256042857|ref|ZP_05445803.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. Rev.1] gi|265989293|ref|ZP_06101850.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. Rev.1] gi|262999962|gb|EEZ12652.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str. Rev.1] Length = 203 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 105/194 (54%) Query: 49 VLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN 108 +LL L + + +L++ E+F+G + G+L +Y LQF ++++ A+G + Sbjct: 1 MLLLVLQRIVTAVDAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYS 60 Query: 109 LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF 168 + I+++ + L +++ L +V D H ++F AL+ SY IP+ Sbjct: 61 GSPADSITENEPQATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAM 120 Query: 169 SSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 F + L F+ LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + Sbjct: 121 IDFTDALSAAFLATLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVV 180 Query: 229 CLSIEIIVYQFSHS 242 + ++ F+H Sbjct: 181 YFILPELLRFFTHE 194 >gi|306841284|ref|ZP_07473995.1| flagellar biosynthesis protein FliR [Brucella sp. BO2] gi|306288686|gb|EFM60017.1| flagellar biosynthesis protein FliR [Brucella sp. BO2] Length = 203 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 103/194 (53%) Query: 49 VLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN 108 +L L + + +L+ E+F+G + G+L +Y LQF ++++ A+G + Sbjct: 1 MLPLVLQRIVTAVDAGQPWTLFRLMAGEMFIGALIGILAHIYFWALQFMANMMAMAVGYS 60 Query: 109 LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF 168 + I+++ + L +++ L +V D H ++F AL+ SY IP+ Sbjct: 61 GSPADSITENEPQATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAM 120 Query: 169 SSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 F + L F+ LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + Sbjct: 121 IDFTDALSAAFLATLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVV 180 Query: 229 CLSIEIIVYQFSHS 242 + ++ F+H Sbjct: 181 YFILPELLRFFTHE 194 >gi|148269162|ref|YP_001243622.1| flagellar biosynthetic protein FliR [Thermotoga petrophila RKU-1] gi|170287824|ref|YP_001738062.1| flagellar biosynthetic protein FliR [Thermotoga sp. RQ2] gi|281411460|ref|YP_003345539.1| flagellar biosynthetic protein FliR [Thermotoga naphthophila RKU-10] gi|147734706|gb|ABQ46046.1| flagellar biosynthetic protein FliR [Thermotoga petrophila RKU-1] gi|170175327|gb|ACB08379.1| flagellar biosynthetic protein FliR [Thermotoga sp. RQ2] gi|281372563|gb|ADA66125.1| flagellar biosynthetic protein FliR [Thermotoga naphthophila RKU-10] Length = 256 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 3/231 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ I R ++ P S P++VR+ + S ++L + +I L V Sbjct: 9 EEKFLAWMCIFTRFTGFFLIAPFFSERAFPVEVRVFLGLFTSWLMLFTVDVSIPLNTPV- 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ + +G G ++ ++ G + IG ++ + + P Sbjct: 68 -LSFTLNLFFNFLVGFGIGFIVYLFLQAFNGAGYIFGFQIGFGMEEVLAFGE-EETNPTG 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ I L +I VF L S P+ FS V F+++L++ Sbjct: 126 ELVYFIALTVFVLIKGPVLVFEGLKDSIDVFPVNLTGVADGFFSYVVERSSDFFVLILKI 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +P + F ++ +I +G++++L+PQ+ ++ + P + +G + + + I Sbjct: 186 GAPVIAFMLIISIVLGIVSRLIPQMNVFMVGLPLKVIIGVILILGMLPIWA 236 >gi|119714988|ref|YP_921953.1| flagellar biosynthetic protein FliR [Nocardioides sp. JS614] gi|119535649|gb|ABL80266.1| flagellar biosynthetic protein FliR [Nocardioides sp. JS614] Length = 253 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 90/227 (39%), Gaps = 5/227 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L R+ S + ++P S +PM ++ + + +P ++ Sbjct: 10 LVAYLLASVRIVSWLAVVPPFSGRAVPMMAKVVLGLGLAFAAVPDGGSIP-----LSTVG 64 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 V ++ +G G + ++ + GS+I G +L + A T Sbjct: 65 LLLNVGTQVLIGLAMGFVTQLLFGAIAAAGSLIDVFGGFSLASGFDPLSMNANTVFGKFH 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ + L+ H V L++++ +P+G + + F ++++ P Sbjct: 125 QMLATVLLFASGGHLLVIGGLLRTFHFLPLGTSPEWQTAPDVLLTAFGMFFTTAVQIALP 184 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + + ++ + LL K+ PQ+ + + P +G+ L + L ++ Sbjct: 185 MIAVLFLSDLGLALLTKVAPQLNAFNVMFPVKVGMTLLLVGLWFPVL 231 >gi|315638913|ref|ZP_07894085.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis JV21] gi|315481131|gb|EFU71763.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis JV21] Length = 255 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 100/239 (41%), Gaps = 4/239 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + + L+ R+ I+ P S + IPM V+ ++ L P ++ ++ Sbjct: 12 VATFMLLFARLSGLIVFFPFFSHNSIPMVVKTTIVFFLTMFLYPLA----KIEVLHLDSF 67 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + ++ E+ G + GL+I+ + + G I+ +G + + + S + + ++ Sbjct: 68 FILQLLSEVLFGMIAGLIIQFVFVIVMMAGEQIAFTMGFTMASVLDPSSGINMPVTSQIL 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ LL D HH + L +S I +G N + + + F+I ++ P Sbjct: 128 NLLALLFFLTFDGHHLMLLFLSQSLTYINLGGFYPSENFMQYLNSGMLSVFVIGFTMAFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++ G+L K +PQ + I P I L + L + I++ F F Sbjct: 188 ILAISLLADVIFGILMKTMPQFNLLVIGYPIKIALAFVVLIAILLIMMEYFKELIAEVF 246 >gi|89897881|ref|YP_514991.1| type III secretion flagellar biosynthesis inner membrane protein [Chlamydophila felis Fe/C-56] gi|89331253|dbj|BAE80846.1| type III secretion flagellar biosynthesis inner membrane protein [Chlamydophila felis Fe/C-56] Length = 289 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 105/227 (46%), Gaps = 7/227 (3%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 ++P L P +++ A+++ ++ P + + + N+++ + L++ EL +G Sbjct: 42 IFAIVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHIANYLDDDIFYFLIIKELCIGT 101 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + G ++ Q GS I+ G+ L+ + + +P +A W+ Sbjct: 102 LIGFILAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIAFWLSG 161 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNI------FSSFVNMLQTTFMIMLRLSSPFLFFYI 194 H V L+++ IPI + L + + + + M Q ++ ++LS+P + Sbjct: 162 GHRIVLTILLQTLEVIPIHKFLPAEMMSLDAPVWIALIKMCQLCLVMTIQLSAPAAVAML 221 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ +G++N++ PQ+ + ++ + +G LF+ L+ IV Q + Sbjct: 222 MSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFITLAWWFIVKQIDY 268 >gi|299066524|emb|CBJ37714.1| putative flagellar biosynthetic protein fliR [Ralstonia solanacearum CMR15] Length = 282 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 95/240 (39%), Gaps = 1/240 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAF-SIVLLPFLWDTIDLQNFVNRA 67 + ++ L+ R+G+ + P L + +P VR+ +A + + + + Sbjct: 14 LETVLLLSLRLGAAFLATPMLPAAGVPTVVRVLVVLALATALSFSLPGADMAQSVPGHLG 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + EL LG L I + G ++ IG + + + + +++ Sbjct: 74 SLVEAALSELALGMTLALGILLAFAAFTTAGQLLDVQIGFGMSQVLDPATNARMPIFSTV 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ ++++ HH + L S P+ Q F + + + + L++ Sbjct: 134 YNQAAVVVFFLVNGHHALLRGLAYSLERFPLAQPWPFASALAPITKQVVGLLGLSFALAA 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P +F ++ +++G++ K +PQ+ + + P I +G + L I + + + Sbjct: 194 PVVFCLLLTEMALGVVAKNLPQMNMLTMGIPVKIVVGVIAGSLWFAGIGNMMTRVYDEIY 253 >gi|315179662|gb|ADT86576.1| Flagellar biosynthesis pathway, component FliR [Vibrio furnissii NCTC 11218] Length = 258 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 98/232 (42%), Gaps = 3/232 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L+ R+G+ + +P IP+ VR A++ +++ P + + + Sbjct: 11 WLGQLWWPFFRIGAVFVSMPFFGDLLIPVWVRSLLALSITVITAPLMPAMPAVDLMSMTS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + G + GL++ + G ++S +GL + + L+ L + Sbjct: 71 LF--LAFEQAVWGLMFGLILHMLFTVFTLLGQIVSLQMGLGMAMMNDPVNGLSVAILGRI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + L ++ H V L++S+ P+G + V++ F L L+ Sbjct: 129 FLVFTTLLFLALEGHLVVIDVLIQSFIVWPVGSGITM-LSLQGIVHIFSWMFSAALALAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + ++ Sbjct: 188 PAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRY 239 >gi|239907022|ref|YP_002953763.1| flagellar biosynthetic protein FliR [Desulfovibrio magneticus RS-1] gi|239796888|dbj|BAH75877.1| flagellar biosynthetic protein FliR [Desulfovibrio magneticus RS-1] Length = 259 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 105/239 (43%), Gaps = 1/239 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ S L R+ + +LP + IP V+ F + S+ L P L + Sbjct: 9 AMVFSFLLTFMRLSVVVFMLPFYGATLIPNVVKASFCLVLSMALWPRLAFAGTALP-ASP 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + E+ +G + +L+R+ Q G+++ ++G +L S+ +E+ L Sbjct: 68 WTIGLMFLGEVLIGLMLDILVRLLFSAAQAAGAIMGFSMGFSLMNSVDPMTGASESGLGH 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ + + ++ H + AL +S+ +P G L + + F++ ++++ Sbjct: 128 LMSQVATMLFLCLNGHLFLLSALAQSFEMVPPGGLLINAAVGEHLIVFTGQLFVMAIKIA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 +P L + ++++ L+ + PQ+ + FI P + +G LF+ + + + L Sbjct: 188 APILASIFLVDLALALVARAAPQMNVLFIGFPLKVSVGFLFMTMVFAAMTVVIENFLLD 246 >gi|108758221|ref|YP_630669.1| FliR/MopE/SpaR family protein [Myxococcus xanthus DK 1622] gi|108462101|gb|ABF87286.1| FliR/MopE/SpaR family protein [Myxococcus xanthus DK 1622] Length = 272 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 94/218 (43%), Gaps = 5/218 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ ++ L++CRV ++ P L +P ++++ + SIVL P + ++ Sbjct: 18 AVIFTVALVMCRVMPVLIFSPFLGGEVVPTELKMGIGLTLSIVLYPLIAGSVTSIPLSAL 77 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 Y L+ E+F+G ++ + G+++ T G N T +S Sbjct: 78 P-YIALMAKEVFVGFTIAFVVNTLFEAARVAGNLVDTMSGSNNAQLYVPQLGQQVTLFSS 136 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + ++ ++ HH V AL S +P+ F + F +++ F +LR+S Sbjct: 137 FKVQLAVVLFLTLNGHHLVIEALADSLVAVPLDGFPRFHDGPWPFFDLMIRVFADLLRVS 196 Query: 187 SPFLFFY----IVFNISIGLLNKLVPQIPIYFISTPYL 220 + ++++G +N++ PQI ++FIS Sbjct: 197 LALAAPAMLATFLTDVALGAINRVAPQIQVFFISMSVK 234 >gi|269960155|ref|ZP_06174531.1| flagellar biosynthetic protein FliR [Vibrio harveyi 1DA3] gi|269835126|gb|EEZ89209.1| flagellar biosynthetic protein FliR [Vibrio harveyi 1DA3] Length = 258 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 103/234 (44%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +I+ L+ RVG+ + +P + IP+ VR A++ ++ P + +++ F Sbjct: 10 VILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMT 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + L + G + GL++ + G IS +GL + + L+ L Sbjct: 70 SLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L ++ H V +++S+ P+G + VN+ F L L+ Sbjct: 128 MFLIFSTLLFLALEGHLLVIDIVIQSFVVWPVGSGI-TALSLQGVVNIFGWMFASALALA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYT 240 >gi|291484191|dbj|BAI85266.1| hypothetical protein BSNT_02670 [Bacillus subtilis subsp. natto BEST195] Length = 194 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 71/177 (40%), Gaps = 3/177 (1%) Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L E +G GL+ + +Q GS I +G ++ + + I Sbjct: 1 MLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIY 60 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLS 186 + LL + ++ HH + + S+ I + Q F+I ++S Sbjct: 61 TMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQMS 120 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +P + + ++++G++ + VPQ+ ++ + P I + + L + + +I + F Sbjct: 121 APVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNVF 177 >gi|51894125|ref|YP_076816.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM 14863] gi|51857814|dbj|BAD41972.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM 14863] Length = 259 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 3/227 (1%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 P S ++P QVR+ + L+P + + +VE+ +G Sbjct: 20 GVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEV---APGRTEGVHLLTAALVEMVVG 76 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G L + LQ G+++ +G L T L +L L+ +D Sbjct: 77 LVIGFLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIALD 136 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 HH + A +SY +P G + + + ++L PF+ ++ ++ Sbjct: 137 GHHWLIRAFAQSYALVPAGGPVEGTASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVAF 196 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +LN+ V Q+ I+ I +G L L L + + F GF Sbjct: 197 AVLNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFEAGF 243 >gi|150020742|ref|YP_001306096.1| flagellar biosynthetic protein FliR [Thermosipho melanesiensis BI429] gi|149793263|gb|ABR30711.1| flagellar biosynthetic protein FliR [Thermosipho melanesiensis BI429] Length = 254 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 94/231 (40%), Gaps = 4/231 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ +++ R+ ++ P LS +IP V++ ++ S ++LP T + Sbjct: 8 ETQFLNWGMLISRITGMFIITPLLSGRFIPTTVKVFLVLSLSYMMLP---QTNSIPLNTP 64 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + +G GL+ + G ++ G L TSM + + + Sbjct: 65 VIHIVLSLTNNFIVGFAMGLMAFMILGAFSIAGELLGVESGFGLATSMDPTMEES-PIIG 123 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + ++ + ++ H V+ A++ S P+ + N F I L++ Sbjct: 124 QFVFLLAIFVFISLNGHLVVYEAILDSIKIFPLDLDFLDFNFTKFITTKFVEMFFIALKI 183 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + + N+ +G+L++LVPQ+ ++ + P L L + + Sbjct: 184 GLPVIGYMFIINVLLGILSRLVPQMNVFMVGIPLKSLLVFLIFLGMVPLWA 234 >gi|297530589|ref|YP_003671864.1| flagellar biosynthetic protein FliR [Geobacillus sp. C56-T3] gi|297253841|gb|ADI27287.1| flagellar biosynthetic protein FliR [Geobacillus sp. C56-T3] Length = 257 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 91/239 (38%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R S +P S +P + A FS +L + Y Sbjct: 10 AFLLVFVRAASFFAAMPLFSYRTVPASYKAGLAFLFSWLLFL----AMPKPVLALDGVYV 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E +G GLL + +Q G +I IG + + L + + Sbjct: 66 LLVVKEALVGLALGLLAAILMAAVQVAGGLIDFQIGFAIANVIDPQTGAQSPLLGEYLHL 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSP 188 + LL ++D HH + + SY +P+ + + + V F ++++P Sbjct: 126 LALLLWLMLDGHHLLLDGMFYSYHWLPLDRLPHVADGRAVEYAVRAFAAMFAAAFQMAAP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++++G++ + VPQ+ I+ + L L ++ I+ F + F Sbjct: 186 LVGSLFLVDVALGIIARAVPQMNIFAVGFSAKTAAAFLLLLAAVGGILLAARGVFHFMF 244 >gi|156976194|ref|YP_001447100.1| flagellar biosynthesis pathway, component FliR [Vibrio harveyi ATCC BAA-1116] gi|156527788|gb|ABU72873.1| hypothetical protein VIBHAR_04965 [Vibrio harveyi ATCC BAA-1116] Length = 258 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 103/234 (44%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +I+ L+ RVG+ + +P + IP+ VR A++ ++ P + +++ F Sbjct: 10 VILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMT 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + L + G + GL++ + G IS +GL + + L+ L Sbjct: 70 SLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L ++ H V +++S+ P+G + VN+ F L L+ Sbjct: 128 MFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVGSGI-TALSLQGVVNIFGWMFASALALA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYT 240 >gi|254228806|ref|ZP_04922229.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25] gi|262396475|ref|YP_003288328.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25] gi|151938753|gb|EDN57588.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25] gi|262340069|gb|ACY53863.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25] Length = 258 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 102/234 (43%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 I+ L+ RVG+ + +P + IP+ +R A++ ++ P + ++ F Sbjct: 10 AILGQLWWPFFRVGAVFISMPFFGDAIIPVWIRTLLALSIVVITAPLMPPMPQVELFSMT 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + L + G + GL++ + G V+S +GL + + L+ L Sbjct: 70 SLF--LAFEQAIWGVMFGLILHMLFNVFTMLGQVVSLQMGLGMAMMNDPINGLSVAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L ++ H V +++S+ P+G + VN+ F L L+ Sbjct: 128 IFLIFSTLLFLALEGHLLVIDIVIQSFVVWPVGSGI-TSLSLQGVVNIFGWMFASALALA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYT 240 >gi|15618732|ref|NP_225018.1| Yop proteins translocation protein T [Chlamydophila pneumoniae CWL029] gi|15836356|ref|NP_300880.1| YopT tranlocation T [Chlamydophila pneumoniae J138] gi|16752217|ref|NP_445585.1| type III secretion inner membrane protein SctT [Chlamydophila pneumoniae AR39] gi|33242183|ref|NP_877124.1| YOP proteins translocation protein T [Chlamydophila pneumoniae TW-183] gi|4377135|gb|AAD18960.1| Yop proteins translocation protein T [Chlamydophila pneumoniae CWL029] gi|6672008|dbj|BAA88641.1| YopT tranlocation protein [Chlamydophila pneumoniae] gi|8163545|gb|AAF73727.1| type III secretion inner membrane protein SctT [Chlamydophila pneumoniae AR39] gi|8979197|dbj|BAA99031.1| YopT tranlocation T [Chlamydophila pneumoniae J138] gi|33236694|gb|AAP98781.1| YOP proteins translocation protein T [Chlamydophila pneumoniae TW-183] Length = 289 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 102/227 (44%), Gaps = 7/227 (3%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 + P L P +++ ++++ ++ P + + N+++ + L++ E+ +G Sbjct: 42 IFAVAPFLGAKLFPSPIKIGISLSWLAIIFPKVLADTQITNYMDNNLFYVLLVKEMIIGI 101 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G ++ Q GS I+ G+ L+ + + +P L + W++ Sbjct: 102 VIGFVLAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGILYHYFVTIIFWLVG 161 Query: 141 FHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 H V L+++ IPI I+ + + M Q ++ ++LS+P + Sbjct: 162 GHRIVISLLLQTLEVIPIHSFFPAEMMSLSAPIWITMIKMCQLCLVMTIQLSAPAALAML 221 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + Sbjct: 222 MSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDY 268 >gi|303247999|ref|ZP_07334265.1| flagellar biosynthetic protein FliR [Desulfovibrio fructosovorans JJ] gi|302490556|gb|EFL50461.1| flagellar biosynthetic protein FliR [Desulfovibrio fructosovorans JJ] Length = 259 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 105/230 (45%), Gaps = 1/230 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + S L + R+ + LLP + +P V+ F + ++ + P L + N Sbjct: 9 ATVFSFVLTLMRISLVVFLLPFFGANLLPNMVKAAFCLMLTLAVFPMLSFPGTMMP-ANV 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 S +++ E+ +G + +L+ +Q G+++ ++G +L SM +E+ L Sbjct: 68 WSLSLMLLGEVVMGLLLNILVLFLFAAVQCAGAIMGFSMGFSLMNSMDPLTGASESGLGH 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ + + ++ H + L +S+ +P G L + + F++ L+++ Sbjct: 128 LMSQVTTMLFLSLNGHLVLLGGLAQSFKLVPPGGLLISPALGEHLIVFSGQMFVMALKIA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +P + + ++++ L+ + PQ+ + FI P IG+G LF+ L + Sbjct: 188 APIMASIFLVDLALALVARAAPQMNVLFIGFPLKIGVGFLFMTLVFGALA 237 >gi|269302613|gb|ACZ32713.1| bacterial export protein, fliR/mopE/spaR family [Chlamydophila pneumoniae LPCoLN] Length = 289 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 101/227 (44%), Gaps = 7/227 (3%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 + P L P +++ +++ ++ P + + N+++ + L++ E+ +G Sbjct: 42 IFAVAPFLGAKLFPSPIKIGIGLSWLAIIFPKVLADTQITNYMDNNLFYVLLVKEMIIGI 101 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G ++ Q GS I+ G+ L+ + + +P L + W++ Sbjct: 102 VIGFVLAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGILYHYFVTIVFWLVG 161 Query: 141 FHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 H V L+++ IPI I+ + + M Q ++ ++LS+P + Sbjct: 162 GHRIVISLLLQTLEVIPIHSFFPAEMMSLSAPIWITMIKMCQLCLVMTIQLSAPAALAML 221 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + Sbjct: 222 MSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDY 268 >gi|313901466|ref|ZP_07834922.1| flagellar biosynthetic protein FliR [Thermaerobacter subterraneus DSM 13965] gi|313468272|gb|EFR63730.1| flagellar biosynthetic protein FliR [Thermaerobacter subterraneus DSM 13965] Length = 257 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 4/209 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L + R ++ P +P R A+ ++V+ P + + Y Sbjct: 14 FLLCLGRTSGLVVASPAFGGGLVPAPARALLAVLLALVVYPVM---PPARPPATALGYGA 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E+ G GL+ + +Q G ++ + G L + S + L + ++ Sbjct: 71 ALLAEVAAGLALGLVTALVFAAVQLAGQLLDLSAGFGLSGVIDPVSSQSMPVLGHFLYLV 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + L D HH + AL SY + +++ F L LS P L Sbjct: 131 MWVLLLATDGHHLILRALADSYRHL-PPGGAGLAGGAPVLLDLAGWMFATGLLLSLPVLA 189 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYL 220 + +++GL+++ VPQ+ ++ P Sbjct: 190 VLVAVMVALGLVSRAVPQLNVFITGLPVQ 218 >gi|153831560|ref|ZP_01984227.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01] gi|148872070|gb|EDL70887.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01] Length = 258 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 103/234 (44%), Gaps = 3/234 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +I+ L+ R+G+ + +P + IP+ VR A++ ++ P + +++ F Sbjct: 10 VILGQLWWPFFRIGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSMT 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + L + G + GL++ + G IS +GL + + L+ L Sbjct: 70 SLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAMMNDPVNGLSVAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L ++ H V +++S+ P+G + VN+ F L L+ Sbjct: 128 MFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVGSGI-TALSLQGVVNIFGWMFASALALA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYT 240 >gi|94495441|ref|ZP_01302021.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58] gi|94424829|gb|EAT09850.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58] Length = 260 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 94/242 (38%), Gaps = 1/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + + R G+ + P +P+Q+RL A+A + L + + + Sbjct: 10 ETQLWVWLIAMIRPGAAFIAAPVFGAPAVPLQLRLILALALGLAALNSVTIQLPPDGVAS 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +V E+ G G +++ G I A+GLN + S L Sbjct: 70 FQG-VLMVAGEVLAGLAMGFAVQIGYAAAFVAGETIGNAMGLNFAAMVDPSSGQGTQVLG 128 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + I+ L +D H + +V+SY IP + + + + + + + Sbjct: 129 QFLSILATFLLLGMDGHLLLASFVVQSYVAIPPSSGILANDTIWRLIEFGGSLLGMGVTV 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + P F ++ I +G+L++ P + ++ + P + G + L ++ I+ + + Sbjct: 189 ALPVGFALVLVQIVMGILSRAAPSLNLFAVGMPMAMMAGLILLAIAAPIMAEGMTAALKA 248 Query: 246 GF 247 G Sbjct: 249 GL 250 >gi|160902842|ref|YP_001568423.1| flagellar biosynthetic protein FliR [Petrotoga mobilis SJ95] gi|160360486|gb|ABX32100.1| flagellar biosynthetic protein FliR [Petrotoga mobilis SJ95] Length = 257 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 102/235 (43%), Gaps = 3/235 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + F I RV +P S +++P+ +++ + S ++L + T + + Sbjct: 10 LWVYFFIFARVAGITFFIPFFSTTFVPVHIKVFITLFISYLVLFEVNGTFPINSSPLVII 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L+ G GL+ + QF G I +G + S + ++ L Sbjct: 70 FYLLM--NFVFGSSVGLIANILFYAFQFAGETIGIQMGFAMANVFDPVTSDEVSLVSELS 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +L ++ ++ ++ S+ +P+ + F F L F I L+LS P Sbjct: 128 FLFSMLLFFIFKGPLILYSIIIDSFNKVPV-VFTLAPDGFMVFSQKLFDVFTIGLQLSMP 186 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 F+ F I+ +++G++++L+PQ+ ++ + P I +G L I I QF+ F Sbjct: 187 FIAFMILLKVALGIVSRLIPQVNVFMVGIPLEILVGFLLFLGVILIWEDQFTTLF 241 >gi|183221909|ref|YP_001839905.1| flagellar biosynthetic protein FliR [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911978|ref|YP_001963533.1| endoflagellar biosynthesis pathway protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776654|gb|ABZ94955.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780331|gb|ABZ98629.1| Flagellar biosynthetic protein FliR [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 260 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 94/237 (39%), Gaps = 3/237 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + S ++ R+ ++ P S I +R+ F+ S+++ P + + + + Sbjct: 6 LHFQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVVANYMP-PVPGHM 64 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ E+ +G G L+ + Q G + IG + + + + Sbjct: 65 INFGIMILSEMLIGVFIGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNSLPAIGT 124 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFMIMLR 184 + ++ VI H + L S+ I I ++ + + F++ + Sbjct: 125 MKNLMATALFLVIGAHRFLIETLAYSFEKIRIISFTGKVNSGLYRLVEDAIGAMFVVSFK 184 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ P + + +++ GL+ K Q+ + +S P + +G+L L ++ I Q Sbjct: 185 IALPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIATQMVQ 241 >gi|28901399|ref|NP_801054.1| putative flagellar biosynthetic protein FliR [Vibrio parahaemolyticus RIMD 2210633] gi|153836031|ref|ZP_01988698.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ3810] gi|260362953|ref|ZP_05775822.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030] gi|260880240|ref|ZP_05892595.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AN-5034] gi|260895357|ref|ZP_05903853.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus Peru-466] gi|28809946|dbj|BAC62887.1| putative flagellar biosynthetic protein FliR [Vibrio parahaemolyticus RIMD 2210633] gi|149750785|gb|EDM61530.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ3810] gi|308085711|gb|EFO35406.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus Peru-466] gi|308092305|gb|EFO42000.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AN-5034] gi|308112144|gb|EFO49684.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030] gi|328469333|gb|EGF40279.1| putative flagellar biosynthetic protein FliR [Vibrio parahaemolyticus 10329] Length = 258 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 101/237 (42%), Gaps = 3/237 (1%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 I+ L+ RVG+ + +P + IP+ VR A++ ++ P + ++ F Sbjct: 7 DLSAILGQLWWPFFRVGAVFLSMPFFGDALIPIWVRSLLALSIVVITAPLMPTMPTVELF 66 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 + + L + G + GL++ + G IS +GL + + L+ Sbjct: 67 SLTSLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAMMNDPVNGLSVAI 124 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 L + I L ++ H V +++S+ P+G + +N+ F L Sbjct: 125 LGRIFLIFSTLLFLSLEGHLLVIDIVIQSFVVWPVGSGI-TALSLQGVINVFGWMFAASL 183 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 184 ALALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYT 240 >gi|253990106|ref|YP_003041462.1| flagellar biosynthesis protein FliR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781556|emb|CAQ84719.1| flagellar biosynthetic protein flir [Photorhabdus asymbiotica] Length = 260 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 96/236 (40%), Gaps = 3/236 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 F + RV + P S +VR+ A+ +++L+P L Q + Sbjct: 16 FFWPLVRVLALFSTAPLFSEKQATKKVRIGLAVMVTLLLMPNLQP---AQIPIFSVAAFW 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ ++ +G GL +++ ++ G +I +GL+ T S L + ++ Sbjct: 73 VIVQQILIGASLGLTMQIAFSAVRHAGEIIGLQMGLSFATFFDPSGGPNMPILARIFNLL 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL D H + L ++ IP+ F F+ + L+ P + Sbjct: 133 TLLLFLAFDGHLWLLSILADTFQVIPVQPLQLNAQGFFLLAQSASMIFINGMMLALPLIT 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N+S+G+LN++ PQ+ I+ + P + G L L L I ++ F F Sbjct: 193 LLLTLNLSLGILNRMTPQLSIFVVGFPLTLTTGILVLTLLIPMLAPFSERMFSELF 248 >gi|304321149|ref|YP_003854792.1| Flagellar biosynthesis pathway, component FliR [Parvularcula bermudensis HTCC2503] gi|303300051|gb|ADM09650.1| Flagellar biosynthesis pathway, component FliR [Parvularcula bermudensis HTCC2503] Length = 256 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 113/242 (46%), Gaps = 3/242 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + +++ I R+ + ++LLPGL IP++VRL + + +LP + D ++ Sbjct: 14 QAFIIAAVAIFARLTAMLVLLPGLGQLAIPVRVRLMAGLVMTSTILPVILDRPLPALAIS 73 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L++ E+ +G G R++ L G++++ + L+ G+ ++ + Sbjct: 74 DPL--VLIVFEVVIGAALGYGFRIFIWALSIAGTIVAQSASLSQLFGAGL-NTEPNPSVG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ + G ++FH + + +SY P+G+ + + F + + L Sbjct: 131 LLLTMAGATLFMTMEFHVRAVGLIAESYELFPLGELPRTDVLAEWATHRAMAAFALGVSL 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S PFL ++NI +G++N+ +PQ+ + FI P + L L +++ +I+ + Sbjct: 191 SLPFLLVNFLYNIVLGMMNQAMPQMMVTFIGVPANVLAALLLLAVAMPMILLVWLARTET 250 Query: 246 GF 247 GF Sbjct: 251 GF 252 >gi|320107035|ref|YP_004182625.1| type III secretion system inner membrane R protein [Terriglobus saanensis SP1PR4] gi|319925556|gb|ADV82631.1| type III secretion system inner membrane R protein [Terriglobus saanensis SP1PR4] Length = 262 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 101/236 (42%), Gaps = 4/236 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I+ S L++ R+G I L P + IP ++++ F +A +I+L P + + Sbjct: 18 ILASGTLVMVRLGGVIALAPPFNSPGIPPRIKVGFLLAMTILLAPIAAGIPEAHVDLEIT 77 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V+ E+ +G + G + + L F GS++ + +L + + + L L Sbjct: 78 S----VLGEMAVGLLFGFSLTLLNEALLFAGSLLGISFSFSLANLLDPNSRVDTPVLGIL 133 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + G+L ++ + A+++S +P+G+ V M+ F L+L++ Sbjct: 134 LNWFGILIIFGAGLDRLILAAVMRSLAVVPLGRATMHLGAVHQCVAMISGVFFAGLQLAT 193 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + + +++ L+++ P +P + P + + L ++ I F Sbjct: 194 PIMAAALAVEVTVALISRFAPALPAQVVGIPLKTIVSYVVLIGALAIWPGWIERHF 249 >gi|239815245|ref|YP_002944155.1| type III secretion system inner membrane R protein [Variovorax paradoxus S110] gi|239801822|gb|ACS18889.1| type III secretion system inner membrane R protein [Variovorax paradoxus S110] Length = 239 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 87/219 (39%), Gaps = 2/219 (0%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 + P +P VR+ + SI L L + ++ + + EL LG G Sbjct: 1 MTPIFYAVPLPASVRMLLVLGLSIALAFGLSA--PVGAWMGWSELLFSALAELALGATLG 58 Query: 85 LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQ 144 L I + G ++ +G + + L S + +L ++++ HH Sbjct: 59 LGILLAFGAFSIAGQLLDVQLGFGIAQVIDPVTQRPIPVLTSAFNYLAVLVFFLLNGHHA 118 Query: 145 VFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLN 204 + + S P+G + G+ + + F + L++P +F ++ ++G++ Sbjct: 119 LLRGISYSLERFPVGASWSIGHAVAPVLKQAAGLFSLGFALAAPVVFCILLVEFALGVVG 178 Query: 205 KLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + +PQ+ ++ + P I +G + L I + ++ Sbjct: 179 RNLPQMNMFTMGIPVKILVGLVALSFWFAGIGSVMTRAY 217 >gi|260901182|ref|ZP_05909577.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ4037] gi|308109321|gb|EFO46861.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus AQ4037] Length = 258 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 100/237 (42%), Gaps = 3/237 (1%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 I+ L+ RVG+ + +P + IP+ VR A++ ++ P + ++ F Sbjct: 7 DLSAILGQLWWPFFRVGAVFLSMPFFGDALIPIWVRSLLALSIVVITAPLMPTMPTVELF 66 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 + + L + G + GL++ + G IS +GL + + L+ Sbjct: 67 SLTSLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAMMNDPVNGLSVAI 124 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 L + I L ++ H V +++S+ P+G + + + F L Sbjct: 125 LGRIFLIFSTLLFLSLEGHLLVIDIVIQSFVVWPVGSGI-TALSLQGVITVFGWMFAASL 183 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 184 ALALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYT 240 >gi|116328496|ref|YP_798216.1| endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331226|ref|YP_800944.1| endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121240|gb|ABJ79283.1| Endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124915|gb|ABJ76186.1| Endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 259 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 102/241 (42%), Gaps = 3/241 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + LI+ R+ + + P S I + ++ F+ S++L P + + Sbjct: 8 FQTFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVTAGFLP-PVPGDMGN 66 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y +V+ E+ +G + G LI + Q G + +G + + +++L Sbjct: 67 YGLVVLAEVLIGMLLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLK 126 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLS 186 ++G+L + + +F +L S+ I + + + I+ + + + F++ +LS Sbjct: 127 NLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYRAMEDAVGAMFLVAFKLS 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P L ++ +S L+ K PQ+ I +S P + +G + + ++ Q +F Sbjct: 187 LPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLISQMGAAFDLS 246 Query: 247 F 247 F Sbjct: 247 F 247 >gi|15606960|ref|NP_214342.1| flagellar biosynthetic protein FliR [Aquifex aeolicus VF5] gi|6225369|sp|O67773|FLIR_AQUAE RecName: Full=Flagellar biosynthetic protein fliR gi|2984202|gb|AAC07732.1| flagellar biosynthetic protein FliR [Aquifex aeolicus VF5] Length = 258 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 3/245 (1%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 ++ E +++L L R+ S + P IP +RL A A S +L F+ I Sbjct: 4 VTSEEFLITLLLSYFRIVSFLFTFPFYGSFLIPNTIRLYLAFALSFAVLSFIN--ITPVK 61 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 + + EL G GL++R+ L G +I+ GL I + Sbjct: 62 VNTFVEFLVYALNELLFGFSAGLILRLLFDALIIAGELIALHTGLGFLQMF-IPGMTQMS 120 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 + + G L + + L +S+ +P+G F F+N +F + Sbjct: 121 LFSGFFTLYGTLIFLSLGGGEFIILGLAESFKRLPVGSFNIFYLNPEVFLNFFYESFRLG 180 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++++ P + ++ N+ + ++N+ +PQ+ ++ + P + +G + L LS+ +I S+ Sbjct: 181 VKIAMPLILTALILNLVLAVVNRFIPQMNVFMVGLPLQVSIGLIILLLSLPLITITMSNH 240 Query: 243 FLYGF 247 F F Sbjct: 241 FQDFF 245 >gi|254499124|ref|ZP_05111814.1| putative flagellar biosynthesis pathway, component FliR [Legionella drancourtii LLAP12] gi|254351663|gb|EET10508.1| putative flagellar biosynthesis pathway, component FliR [Legionella drancourtii LLAP12] Length = 249 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 5/240 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + SLF I R+G+ ++ P ++ +P+ RL S++L ++ +L N Sbjct: 7 WLTSLFFITIRLGTVLLFTPIQAIRQLPIHARLILIFTLSMLLANYVPQKSELSNNAILF 66 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + E G + + Q G +I + G N S+ E + L Sbjct: 67 GG----LAEFANGLILATSLYAAFAIFQIAGQLIDSETGYNATAVFNPSEHSQEPLTSHL 122 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L + +D H +F L S+ IP G F F+ + F + ++S Sbjct: 123 LSMLAVLFFFSLDGHQWLFKGLAYSFIIIPPGTLSLFAG-FTPVIKQFSFMFSMAFMIAS 181 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + ++ L+ + +PQ+ YF++ P I G L + + I + F F Sbjct: 182 PIIIALLALDLCGALITRNMPQVSTYFLTLPIKILFGLFLLFMMLNYINPLTTTVFSQCF 241 >gi|220913715|ref|YP_002489024.1| flagellar biosynthetic protein FliR [Arthrobacter chlorophenolicus A6] gi|219860593|gb|ACL40935.1| flagellar biosynthetic protein FliR [Arthrobacter chlorophenolicus A6] Length = 252 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 100/240 (41%), Gaps = 6/240 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + ++ L R+ + +++ P + IP +V+ + + + + D + Sbjct: 7 QPWLEAMLLASVRMIAFLVVAPPFAHHAIPARVKAMLGLGLGLAVSGRVADGY---VPLG 63 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A + +++EL G G L+ + +Q GS+I + G + + + Sbjct: 64 TAGFITAIVLELATGLALGFLVYLVFAAIQSAGSLIDLSSGFQMAQAFDPQMMVNGAQFT 123 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ + L L+ D +H V L S+ P+ ++ + V + F+ +++ Sbjct: 124 RLLQMAALALLFASDGYHLVIGGLTGSFAAFPLAGGIDLARPVEAMVQAVTGMFLCAVQI 183 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL---FLCLSIEIIVYQFSHS 242 + P + ++ ++ +GLL ++ P + + + P I L + FL L + IV + Sbjct: 184 AGPLMVVLLLADVGLGLLTRVAPALNAFALGFPLKILLTLVLAGFLFLGLPRIVAVLAEQ 243 >gi|15643672|ref|NP_228718.1| flagellar biosynthesis protein FliR [Thermotoga maritima MSB8] gi|4981446|gb|AAD35991.1|AE001755_14 flagellar biosynthesis protein FliR [Thermotoga maritima MSB8] Length = 258 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 3/231 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ I R ++ P S P+ VR+ + S ++L + +I L V Sbjct: 11 EEKFLAWMCIFTRFTGFFLIAPFFSERAFPVVVRVLLGLFTSWLMLFTVDVSIPLNTPV- 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ + +G G ++ ++ G + IG ++ + + P Sbjct: 70 -LSFTLNLFFNFLVGFGIGFIVYLFLQAFNGAGYIFGFQIGFGMEEVLAFGE-EETNPTG 127 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ I L +I +F L S P+ FS V F+++L++ Sbjct: 128 ELVYFIALTVFVLIKGPVLLFEGLKDSIDVFPVNLTGVTDGFFSYIVGRSSDFFVLILKI 187 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +P + F ++ +I +G++++L+PQ+ ++ + P + +G + + + I Sbjct: 188 GAPVIAFMLIISIVLGIVSRLIPQMNVFMVGLPLKVIIGVILILGMLPIWA 238 >gi|170737010|ref|YP_001778270.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3] gi|169819198|gb|ACA93780.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3] Length = 265 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 99/231 (42%), Gaps = 2/231 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 ++F CR+ + + P L +P+++RL A+ ++ + P + + Sbjct: 14 TIFWPFCRIAAALAASPILGDVMVPVRLRLLIALFLALAIQPGIPTMPVIDLLQLEG--V 71 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + ++ +G + G + + LQ G++ S+ +GL++ + L S++ + Sbjct: 72 AAMAEQVLIGGLLGFVFHLVLCALQIFGTIASSQLGLSMAQINDPMNGQMADVLTSVMYV 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + +L + +D H + + +S+ P+G+ + + F + L+ P + Sbjct: 132 VFILLFFAVDGHLILTSVIARSFAVWPVGRFAFDLDALKHLAFAVGWIFSAAVALALPVM 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 F +V + +GLLN++ P + I+ + G L L L + + + Sbjct: 192 FATLVVQVGLGLLNRVAPALNIFALGFSITTMFGLLLLTLLLPSLPDHYGR 242 >gi|221635442|ref|YP_002523318.1| flagellar biosynthetic protein FliR [Thermomicrobium roseum DSM 5159] gi|221157870|gb|ACM06988.1| flagellar biosynthetic protein FliR [Thermomicrobium roseum DSM 5159] Length = 260 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 2/213 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L+V RVG + LLPG +P+ R+ A+ ++ L+PF+ D + Sbjct: 12 IALFVLVVTRVGLVLSLLPGFGSQAVPLPARVALAVVLALALVPFVP--TDASGLSDPTV 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ + EL G GL + ++ S+I +G L + + + T LN+L Sbjct: 70 FAVALARELVTGLALGLAVAAVFAAVEMAASLIGYQLGFGLAATFNPAFGMQGTALNTLY 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L L+ + HHQ+ AL +S +P G + + + + F LR+ P Sbjct: 130 LALAALVLFGTNGHHQLVGALARSLILLPPGAAAPDVDTPRAVIALTGAMFSDALRIGLP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 +V +I +GLLN++VPQ+ ++F+ P I Sbjct: 190 IAGSLLVADIGLGLLNRMVPQMSVFFVGLPAKI 222 >gi|332757516|gb|EGJ87851.1| flagellar biosynthetic protein FliR [Shigella flexneri K-671] Length = 253 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 79/178 (44%) Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L + ++ +G G ++ ++ G +I +GL+ T + L L ++ Sbjct: 63 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ LL + H + LV ++ T+PIG E N F + F+ L L+ P Sbjct: 123 MLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 183 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 240 >gi|163800126|ref|ZP_02194027.1| putative flagellar biosynthetic protein FliR [Vibrio sp. AND4] gi|159175569|gb|EDP60363.1| putative flagellar biosynthetic protein FliR [Vibrio sp. AND4] Length = 258 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 104/236 (44%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +I+ L+ RVG+ + +P + IP+ VR A++ ++ P + +++ F Sbjct: 10 VILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPTMPEVELFSMT 69 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + L + + G + GL++ + G IS +GL + + L+ L Sbjct: 70 SIF--LALEQAMWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILGR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I L ++ H + +++S+ P+G + VN+ F L L+ Sbjct: 128 MFLIFSTLLFLALEGHLLIIDIVIQSFVVWPVGSGI-TALSLQGVVNIFGWMFASALALA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++ Sbjct: 187 LPAIASMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYTTL 242 >gi|120597287|ref|YP_961861.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1] gi|120557380|gb|ABM23307.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1] Length = 232 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 102/224 (45%), Gaps = 3/224 (1%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83 M++P L +Y+P+ VR+ A++ + +L P L + + + L + +L +G + Sbjct: 1 MIMPLLGNAYVPVMVRIFLALSIAALLAPMLPPVPPVDAISLASLF--LAIEQLLIGFML 58 Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 L + + + G+++S +GL + ++ + ++ I G L ++ H Sbjct: 59 ALFLTLLIHVMTMLGNIMSMQMGLAMAVMNDPANGDSSPIISEWFQIFGTLIFLALNGHL 118 Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203 +V S+ PIG + F V+ L F L L+ P + ++ NI+ G+L Sbjct: 119 VAINIIVDSFRLWPIGHGI-FELPLMGLVSRLAWLFAASLMLAIPAVLAMLMVNITFGVL 177 Query: 204 NKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ P + I+ + P + +G L + LS+ I ++S L Sbjct: 178 SRSAPSLNIFSLGFPMTMLMGLLCVFLSLSGIPSRYSDLCLDAL 221 >gi|239628944|ref|ZP_04671975.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridiales bacterium 1_7_47_FAA] gi|239519090|gb|EEQ58956.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridiales bacterium 1_7_47FAA] Length = 261 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 1/205 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+G I + P + +P+ VR A+A S+++ P + ++ Sbjct: 12 FLLVFARMGGMIFINPVFARKGVPLMVRTGLALALSLLIAPAARAGGQAVVLYSTFDMAE 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ EL LG G + +++ L G ++ TA GL + M + + L + I Sbjct: 72 ALVRELILGLGIGCVFQLFFYMLYVAGDLLDTAFGLAMGKVMDPMNGVQTAILGQFVNIF 131 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFL 190 L + H +Y IP+G + F N+ + M T F+++++L+ PF+ Sbjct: 132 FFLYFFATGCHLLTVRLFAYTYEVIPVGAGVFFVRNVLWYIITMSATVFLMVIKLALPFV 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFI 215 V +++G+L KL+PQI ++ I Sbjct: 192 AAEFVLEMTMGVLMKLIPQIHVFVI 216 >gi|291617860|ref|YP_003520602.1| FliR [Pantoea ananatis LMG 20103] gi|291152890|gb|ADD77474.1| FliR [Pantoea ananatis LMG 20103] Length = 261 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 101/240 (42%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + R+ + + P LS + +V++ A + +L+P L + + Sbjct: 12 WVSQFFWPLVRILALLATAPVLSEKAVSKRVKIGLAAMITWILIPNL---PPVNVTLFSP 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ ++ +G G ++ ++ G +I +GL+ T + L L Sbjct: 69 AGFMLLIQQMLIGIAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPASRLNMPVLARF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ +L ++ ++ V + + + + G F + Q F+ + L+ Sbjct: 129 LDMLAMLFIFDFQRSPVAYFPAVGQFSYVAYRRRASSGKCLYGFGEIRQHDFLNGMMLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+ +GLLN+L PQ+ I+ I P + +G L + L + ++ H F F Sbjct: 189 PLIVLLLTINMVLGLLNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFGEIF 248 >gi|24215309|ref|NP_712790.1| flagellar biosynthetic protein [Leptospira interrogans serovar Lai str. 56601] gi|24196410|gb|AAN49808.1| flagellar biosynthetic protein [Leptospira interrogans serovar Lai str. 56601] Length = 259 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 100/238 (42%), Gaps = 3/238 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R+ + + P S I + ++ F+ S++L P + + + Y Sbjct: 11 FLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVIAGFLP-PVPGDMGSYGL 69 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E +G + G LI + Q G + +G + + +++L ++ Sbjct: 70 VVIAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLL 129 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLSSPF 189 G+L + + +F +L S+ I + + + I+ + + + F + RLS P Sbjct: 130 GMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYKAMEDAVGAMFFVAFRLSLPV 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ +S L+ K PQ+ I +S P + +G + + +V Q +F F Sbjct: 190 LGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMGAAFDLSF 247 >gi|57168057|ref|ZP_00367196.1| flagellar biosynthetic protein FliR [Campylobacter coli RM2228] gi|57020431|gb|EAL57100.1| flagellar biosynthetic protein FliR [Campylobacter coli RM2228] Length = 234 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 4/229 (1%) Query: 19 VGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78 + I+ P S + IPM ++ FA+ ++ L P L+ +++ ++ E+ Sbjct: 1 MSGLIVFFPFFSHNSIPMIIKTTFALFLTMYLFPLA----KLEILHLDSFFIIQLLSEIV 56 Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138 G + GL++++ + G I+ +G + + + S + ++ +I LL Sbjct: 57 FGMIAGLMLQIVFAIVMMAGEQIAFTMGFTMASVLDPSSGTNMPITSQILHLIALLFFLA 116 Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 D HH + L S G I +G N+ + F+I +S P L ++ + Sbjct: 117 FDGHHLMLLFLSHSLGYINLGGFYPHENLMHYLNMGMLNIFIIGFTMSFPILGISLLADT 176 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 GLL K +PQ + I P I LG + L + +++ F L F Sbjct: 177 IFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKDLILEVF 225 >gi|332162920|ref|YP_004299497.1| flagellar biosynthesis protein fliR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667150|gb|ADZ43794.1| Flagellar biosynthesis protein fliR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862335|emb|CBX72495.1| hypothetical protein YEW_GP28260 [Yersinia enterocolitica W22703] Length = 257 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 93/211 (44%), Gaps = 2/211 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L+L R+ S + P L + ++ ++ +I++ P L + L ++ Sbjct: 12 VFALWLPFVRILSFLHFCPVLQHRAFTRKAKIGMSLLLAILITPMLSQPVILGELLSMNS 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L ++ G + G ++++ LQ G ++S +GL + + + T ++ +I Sbjct: 72 LL-LTGEQILWGWLFGSMLQLVFAALQAAGQILSMNMGLGMAVMNDPTSGASTTVISQII 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + L + ++ H + L KS+ + P+G+ +N + S L L+ P Sbjct: 131 FVFSTLIFFTMNGHLLLITILYKSFISWPMGEAINDFS-LRSLALSLGWIMSSATLLALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPY 219 F ++ S GLLN++ P + ++ + P Sbjct: 190 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPI 220 >gi|91791411|ref|YP_561062.1| type III secretion system inner membrane R protein [Shewanella denitrificans OS217] gi|91713413|gb|ABE53339.1| type III secretion system inner membrane R protein [Shewanella denitrificans OS217] Length = 261 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 2/235 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + L L CRVG L MS IP +R I L ++ +N Sbjct: 16 EQYLKVLGLFYCRVGIVFWLPLVGPMSRIPTSIRFIIVNVIVIALFSLQGAPAVIEVDLN 75 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 Y L+ +E G L++ V + L F G I IGL + ++ L Sbjct: 76 TRSYLTLLAIEFITGITFSLILAVPAVVLLFFGRAIDMQIGLGASGIFNPTSQTQDSLLG 135 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L L W + H V L++S +P+GQ N + F+ T F++ L L Sbjct: 136 VLFSFAALTLFWSLGLHLDVLKILIESIKVLPLGQTRNVEAMV--FIEYFSTAFVLGLIL 193 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +P + + +I G+++K +PQ+ IYF+ P I +G + L +++ + F Sbjct: 194 FAPVIIMLFIVDICSGIISKSMPQMSIYFVIMPLKIMIGFIVLTITLTNLASHFE 248 >gi|149189858|ref|ZP_01868138.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1] gi|148836344|gb|EDL53301.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1] Length = 258 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 102/233 (43%), Gaps = 3/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L+ R+G+ + +P + IP+ VR A++ ++ P + + + Sbjct: 11 WLGQLWWPFFRIGAAFLAMPFFGDALIPVWVRALLALSIVVITAPLMPAMPAVDLLSMTS 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + G GL++ ++ G ++S +GL + + L+ L + Sbjct: 71 LF--LAFEQAMWGLFFGLILHLFFTIFTMLGQIVSLQMGLGMAIMNDPVNGLSVAILGRI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ L ++ H V LV+S+ P+G + + + V++ F L L+ Sbjct: 129 FLLLCTLLFLALEGHLLVIDILVQSFVVWPVGSGITIAS-LDNIVSLFGWMFASALALAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P + ++ NIS G++N+ P + +Y + P + LG + L++ I +++ Sbjct: 188 PAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSILLTVSGIPSRYT 240 >gi|219681462|ref|YP_002467847.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682018|ref|YP_002468402.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471137|ref|ZP_05635136.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621751|gb|ACL29907.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624305|gb|ACL30460.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085826|gb|ADP65908.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086399|gb|ADP66480.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086978|gb|ADP67058.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 258 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 103/241 (42%), Gaps = 3/241 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + F + RV S + P I + ++ + S ++ PFL ++ + Sbjct: 12 LISNFFWPMIRVLSFFSVAPIFKEKLINRKNKILLSGMISWLVWPFL---PEVHTVLFSY 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G V G ++ + +G +I +GL+ T + + + ++ Sbjct: 69 FGFLLILQQILIGIVLGFTAQLLFATINLSGEIIGLQMGLSFATFFNNNSQIGTSIISRF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ L ++ H + ++ S+ ++PI NIF + + F+ L L Sbjct: 129 LNILALFVFITLNMHLYLISIVIDSFYSMPIDGYFLNVNIFFILLKFSSSIFLNGLLLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + + + LLN+L PQI I+ I P + LG L L I +++ Sbjct: 189 PIMIILLSISFVMSLLNRLSPQISIFSIGFPLNLILGMLMLYFLIPVMLPFLKKILDDLI 248 Query: 248 F 248 F Sbjct: 249 F 249 >gi|114762170|ref|ZP_01441638.1| flagellar biosynthetic protein FliR [Pelagibaca bermudensis HTCC2601] gi|114545194|gb|EAU48197.1| flagellar biosynthetic protein FliR [Roseovarius sp. HTCC2601] Length = 255 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 105/225 (46%), Gaps = 3/225 (1%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + RVG+ + +LPGL +PM+VRL + ++ +LP + L + ++ Sbjct: 21 VFLRVGAMMAVLPGLGEQTVPMRVRLALGLVLTVTVLPATGADLALPPP-GLGTVAWALV 79 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E +G + GL +R++ LQ GS+ + + +L +G S + + ++ + L Sbjct: 80 TESVIGLILGLWLRLFMHALQTAGSIAAQST--SLAQLLGNSAADPMPAIGHVLTVAALA 137 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 L FH +V ++ S+ P + I + + F + L++PF+ Sbjct: 138 LLMSTGFHVKVAGFIILSFELFPALLLPDPSLIAQAGRGHIAMAFALAFTLAAPFVILSA 197 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++N+++G +NK +PQ+ + F+ P + L ++ +++ + Sbjct: 198 LYNLTLGFINKAMPQLMVAFVGAPVITFGSIALLLVTAPLMLSLW 242 >gi|15616706|ref|NP_239918.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386790|sp|P57186|FLIR_BUCAI RecName: Full=Flagellar biosynthetic protein fliR gi|25346394|pir||D84939 flagellar biosynthetic protein fliR [imported] - Buchnera sp. (strain APS) gi|10038769|dbj|BAB12804.1| flagellar biosynthetic protein fliR [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 258 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 103/241 (42%), Gaps = 3/241 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + F + RV S + P I + ++ + S ++ PFL ++ + Sbjct: 12 LISNFFWPMIRVLSFFSVAPIFKEKLINRKSKILLSGMISWLVWPFL---PEVHTVLFSY 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ ++ +G V G ++ + +G +I +GL+ T + + + ++ Sbjct: 69 FGFLLILQQILIGIVLGFTAQLLFATINLSGEIIGLQMGLSFATFFNNNSQIGTSIISRF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I+ L ++ H + ++ S+ ++PI NIF + + F+ L L Sbjct: 129 LNILALFVFITLNMHLYLISIVIDSFYSMPIDGYFLNVNIFFILLKFSSSIFLNGLLLVL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + + + LLN+L PQI I+ I P + LG L L I +++ Sbjct: 189 PIMIILLSISFVMSLLNRLSPQISIFSIGFPLNLILGMLMLYFLIPVMLPFLKKILDDLI 248 Query: 248 F 248 F Sbjct: 249 F 249 >gi|89069812|ref|ZP_01157147.1| flagellar biosynthetic protein FliR [Oceanicola granulosus HTCC2516] gi|89044613|gb|EAR50729.1| flagellar biosynthetic protein FliR [Oceanicola granulosus HTCC2516] Length = 254 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 106/240 (44%), Gaps = 8/240 (3%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ + + RV + + P +P+++RL A+A ++V+LP + Sbjct: 13 QEVLWAGVAVFLRVAAMAGVFPVFGEQSVPLRLRLAIALALTLVVLPAV-------PLAG 65 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A ++ E +G GL +R+ + LQ G++ + + L+ + + Sbjct: 66 GAPGLAALVGEPLVGLFFGLFLRLIVMALQIAGTIAAQSTSLSQIFGAS-AGIEPLPAMG 124 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + GL ++D H + ++ +Y P+ + V + F L Sbjct: 125 HFLVVAGLALAALLDLHVRAAAYILLTYELAPVSTVPAAALVAEVGVAEVGRAFRFGFAL 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++PFL +++NI++G++N+ +PQ+ + F+ P + G L +S I++ +S L Sbjct: 185 AAPFLVASLLYNITLGVINRAMPQLMVAFVGAPAITAGGLALLAISAPIMLAAWSDRLLD 244 >gi|325295423|ref|YP_004281937.1| flagellar biosynthetic protein FliR [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065871|gb|ADY73878.1| flagellar biosynthetic protein FliR [Desulfurobacterium thermolithotrophum DSM 11699] Length = 260 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 104/227 (45%), Gaps = 2/227 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ-NFVNRAYYS 70 L RV S + P +S + IP+ +R+ +AFS L + + + ++ + Sbjct: 13 FLLTFVRVASFFLAFPFISTTLIPLNIRILLILAFSFYLSQIIEPSQMIDITKIDLLSFF 72 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E+ LG +L +Y+ +IS ++GL + + + + L+ Sbjct: 73 LLVIKEVLLGISFSILTTIYSSIFIHAAELISYSMGLTIVNIFDSTFG-SISVLSRFFVY 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 I + + D + A V+S+ IPIG ++ F+ + F + +++ PF+ Sbjct: 132 IFYVVFFFTDAYKIFIAAFVESFKIIPIGNFHLSDSLLYFFLKESKLIFFLSFKIAFPFI 191 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + N+ + L+N+L+PQI ++ + P I +G FL I++Y Sbjct: 192 ITLFITNLILALVNRLIPQINVFIVGLPLQIFIGLFFLSTGFSILIY 238 >gi|331005444|ref|ZP_08328823.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC1989] gi|330420720|gb|EGG95007.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC1989] Length = 255 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 101/235 (42%), Gaps = 3/235 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L+ R + ++ P S++ +P ++++ + S +L+ L + +N A Sbjct: 14 VLVFIRCSALFLMSPLFSIARVPTRIKVFLLIIISAILVSSLNLQLP-DTSINSAQLVYY 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 EL +G I G ++ +G + + + S + + +L+ ++ Sbjct: 73 AFGELVIGAAMAFGIFAAFASFSLGGRILDFQMGFGVASLIDPSTNAQAPMIGTLLKMLA 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ +++D HH + + + P G + F+ + L++P +F Sbjct: 133 VMIFFLVDGHHLLIRGIAYTLAHYPPGTMPKI--DIQIIIKQFGLMFVYGVMLAAPVIFI 190 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ +IS+G+ + +PQ+ ++ + P IG+G L LS++ ++ ++ F Sbjct: 191 ILLIDISMGIAARTMPQVNMFIVMLPLKIGVGLFVLMLSLQFLLPLMKKVYISIF 245 >gi|327478780|gb|AEA82090.1| flagellar biosynthetic protein FliR [Pseudomonas stutzeri DSM 4166] Length = 259 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 4/235 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ + CR+ + L P S I ++VR+ A+A ++VL L L Sbjct: 10 LLAYWWPFCRIMAVFSLAPMFSHKAISVRVRILLALALTLVLGAALPTPPTLDPLSLAGM 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE-TPLNSL 127 + + ++ +G + GL + + G V+ST +GL++ + ++ + + L Sbjct: 70 LAT--IEQIAMGLLLGLALLLVFTVFTLIGDVVSTQLGLSMAVFNDPMNGVSSASIIYQL 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I+ L + +D H + +S+ PIG L + + + + L ++ Sbjct: 128 YFILLALLFFAVDGHLVTVSIIYQSFVYWPIGSGLFY-DGLQTIAWSMAWVISAALLIAL 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P +F + GLLN++ P + ++ + P I G + L++ + + H Sbjct: 187 PIVFCMTLVQFCFGLLNRISPAMNLFSLGFPMAILAGLSLIYLTLPNLAEAYLHL 241 >gi|329897647|ref|ZP_08272171.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC3088] gi|328921096|gb|EGG28505.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC3088] Length = 238 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 102/232 (43%), Gaps = 4/232 (1%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 + R+ + I+ P +S+ + + +R+ A+ + V+ P + +++ Sbjct: 1 MLRISAMIIAAPLISLDVVSLPIRIVLAIVLTWVIYPLIEV---PNLNPLSPEGMVILVR 57 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E+F+G + ++V L G +S ++GL + M S L+S + I L Sbjct: 58 EMFVGIAIAVTLQVVNGALILAGQALSMSMGLGMAQIMDPSAGT-VPVLSSFLIIFSTLI 116 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 H +F+ +++S+ +PIG + + + F+ + ++ P + ++ Sbjct: 117 FMSFGGHSLLFFLILQSFEFVPIGAAFDLDAVILKVMAWTSMVFLGGILIAMPIMLTMLL 176 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 N+ +G++ + P + I+ + P +I G L +++ I ++ ++ F Sbjct: 177 VNLCLGIVTRSAPALNIFAVGFPAMILAGLALLIINLTNIAHRIEWLWVEAF 228 >gi|328948398|ref|YP_004365735.1| flagellar biosynthetic protein FliR [Treponema succinifaciens DSM 2489] gi|328448722|gb|AEB14438.1| flagellar biosynthetic protein FliR [Treponema succinifaciens DSM 2489] Length = 273 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 11/248 (4%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL---------WDTIDLQN 62 + R + IM LP S +P ++ A + + P + + Sbjct: 12 FLFVAVRCFATIMTLPLFSSRTVPRTAKIALAGYMAFFIFPQISLADGIFSSYKNYISPE 71 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 Y L+ E +G + G +++ G + +GL+ + Sbjct: 72 GNFSLEYILLLAGEAMIGIILGFFVQIIFASFSTAGQFFAFQMGLSASEVYDSLSQVENP 131 Query: 123 PLNSLIGIIGLLALWVID-FHHQVFYALVKSYGTIP-IGQELNFGNIFSSFVNMLQTTFM 180 + + +L + + + +S+ I I N + L F Sbjct: 132 LMGQFFNFMAMLVFLQNNWLQMLLLKGMSESFKVISAISIVDNSRFFAEFMMKSLTLLFK 191 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L ++ P + + N+++G+L+K PQ+ + P L+ + + + + F Sbjct: 192 DALIIALPVMASLFLINVTVGILSKAAPQMNLLSEGFPVLMLTAYFLIFVLVPQFIEFFE 251 Query: 241 HSFLYGFF 248 F G F Sbjct: 252 GCFKGGLF 259 >gi|45657252|ref|YP_001338.1| flagellar biosynthetic protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600490|gb|AAS69975.1| flagellar biosynthetic protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 259 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 100/238 (42%), Gaps = 3/238 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R+ + + P S I + ++ F+ S++L P + + + Y Sbjct: 11 FLLILSRLMGLLSVAPVFSYPSIGVPQKMIFSFLVSVILFPVIAGFLP-PVPGDMGSYGL 69 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +V+ E +G + G LI + Q G + +G + + +++L ++ Sbjct: 70 VVIAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLKNLL 129 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLSSPF 189 G+L + + +F +L S+ I + + + I+ + + + F + RLS P Sbjct: 130 GMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYKAMEDAVGAMFFVAFRLSLPV 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ +S L+ K PQ+ I +S P + +G + + +V Q +F F Sbjct: 190 LGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMGAAFDLSF 247 >gi|78044979|ref|YP_359854.1| flagellar biosynthetic protein FliR [Carboxydothermus hydrogenoformans Z-2901] gi|77997094|gb|ABB15993.1| flagellar biosynthetic protein FliR [Carboxydothermus hydrogenoformans Z-2901] Length = 255 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 98/230 (42%), Gaps = 3/230 (1%) Query: 10 MSLFLIVCRVGSCIMLLP-GLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +I R+ + P + + +P V+ F + + +LLP + + + Sbjct: 5 LIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQRN-- 62 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E +G + G + ++ G + GL+ T + + I Sbjct: 63 FFLLLIGESLIGLLLGFVTLIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMANFI 122 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + G+L ++ + HH++ L S+ IP G+ L + + + ++ + ++ P Sbjct: 123 YLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPGLSELLIKIFALVMLVAIEIAIP 182 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 FL ++ ++++G+L + PQ+ ++ +S I L L L + I Y Sbjct: 183 FLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYF 232 >gi|46445834|ref|YP_007199.1| putative type III secretion inner membrane protein SctT [Candidatus Protochlamydia amoebophila UWE25] gi|46399475|emb|CAF22924.1| putative type III secretion inner membrane protein SctT [Candidatus Protochlamydia amoebophila UWE25] Length = 280 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 99/245 (40%), Gaps = 7/245 (2%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 P LFL R+ I L P +P V++ A++F ++ LP L + Sbjct: 18 DPLAFFSLLFLFFGRMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQLI-FVTTTPI 76 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 ELF+G + G LI + + +Q G +I G + + +P Sbjct: 77 TFNLLLVLYFFKELFVGLLLGYLISIPFIIVQNCGILIDHQRGGSSLMINDPTLQNQSSP 136 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL------NFGNIFSSFVNMLQT 177 L +L ++ + ++ID + + +SY +P + L NI + ++ Sbjct: 137 LGTLFNLVLIYLFFMIDGPFMILDIISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGK 196 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 ++ +L++P L ++ + +G+ N+L PQ+ I F+ P L + ++ + Sbjct: 197 VMILSTQLAAPALIMILMTDFFLGIANRLAPQVQITFLGMPLKSLLALAIVFFGWQLFLK 256 Query: 238 QFSHS 242 Q Sbjct: 257 QIVDE 261 >gi|291562037|emb|CBL40853.1| flagellar biosynthetic protein FliR [butyrate-producing bacterium SS3/4] Length = 252 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + ++ + V R+ I P S P+++R F A S++L D + + A Sbjct: 1 MFITFSMAVMRMSGAIGFNPLFGKSNFPVKIRAYFIFALSLLLY-LSADQTQMAYPGSMA 59 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y ++ ELFLG V + + L ++F S++ ++GL++ T + + Sbjct: 60 EYILMLAGELFLGAVLAFAMELAFLTIRFASSIMDYSMGLSMAQVYDPQYGTQSTVSSGI 119 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 +L + + H ++ +S IP G+ + + ++ + Sbjct: 120 YYAFMVLIFFASNSHLRLLELFYQSVQLIPFGKVTFNPMLVHVITAGFCQGILTGMQFAF 179 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + +V +++G+L +++PQI ++ ++ I +G L + L + F Y + Sbjct: 180 PMIAIELVSELAMGILMRIIPQINVFTVNFQVKIIMGLLMMLLLFSPMADYIDTIFTYMY 239 >gi|217077043|ref|YP_002334759.1| flagellar biosynthetic protein FliR [Thermosipho africanus TCF52B] gi|217036896|gb|ACJ75418.1| flagellar biosynthetic protein FliR [Thermosipho africanus TCF52B] Length = 254 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 93/231 (40%), Gaps = 4/231 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ +++ R+ ++ P LS +++P VR +A S + LP + + Sbjct: 8 ETQFLNWAMLISRLTGMFLITPLLSAAFVPTTVRAFLVLALSYMSLPQVNP---IPLDTP 64 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ +G GLL G ++ G L T+M + + Sbjct: 65 VITIVLSLLNNFLIGFAIGLLAYFIFGAFSIAGELLGIESGFGLATAMDPTM-EETPIVG 123 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 LI ++ + ++ H V+ +V S T P+ + ++ F I L++ Sbjct: 124 QLIFLLSIFVFISLNGHMVVYQGVVDSIKTFPLYLDKLDFSLVKFIETKFIEMFFIALKI 183 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + + N+ +G+L++LVPQ+ ++ + P L + + I Sbjct: 184 GLPVIGYMFIINVLLGILSRLVPQMNVFMVGIPLKSLLVFVIFLGMVPIWA 234 >gi|149200775|ref|ZP_01877750.1| Flagellar protein FliR [Roseovarius sp. TM1035] gi|149145108|gb|EDM33134.1| Flagellar protein FliR [Roseovarius sp. TM1035] Length = 273 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 92/235 (39%), Gaps = 2/235 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + R+G+ ++ P + +I + VR+ ++ ++ L+ + I + ++ Sbjct: 22 GLALQFLFAMLRIGAFVLSAPLFAARFISLPVRIIISVCLTVPLMGQVP--IPEPDALSS 79 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + EL +G G+++++ G I+ GL L + + + Sbjct: 80 LSSVVIALRELAIGLSAGMVLQILFAAAVMAGDRIANTAGLGLAAQVDPTSGSQSPVIGQ 139 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + L D H ++ SY IPIG + + + + F +L Sbjct: 140 FFMLFLLAIFVTEDGHLAAIRLMLDSYRLIPIGTPIAGTVLIDASMEATTAMFRNAAQLM 199 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 P + ++ N+ IG++ + P + ++ P + + L L++ + S Sbjct: 200 MPVVSVLLLLNLVIGVITRSAPSLNLFAFGFPLTMTATLVLLFLTVTSLGPALSE 254 >gi|313905146|ref|ZP_07838515.1| type III secretion system inner membrane R protein [Eubacterium cellulosolvens 6] gi|313470049|gb|EFR65382.1| type III secretion system inner membrane R protein [Eubacterium cellulosolvens 6] Length = 250 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 99/240 (41%), Gaps = 1/240 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ LIV R+ I+L P S IP V+ AFS++L + + + Sbjct: 1 MVILFALIVMRMTGAIVLNPMTGRSEIPALVKGALTFAFSLMLFMWTGGRLAVAPKT-WF 59 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ + + EL LG G + + ++F +++ +GL++ T + L Sbjct: 60 EFASMALRELLLGFTIGFGMELSMTVIRFGTAIVDYMMGLSMAQVYDPRSGAQMTVSSGL 119 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 +L V D H + F + + IP G + + ++ L+ + Sbjct: 120 YTTFMMLVFLVNDGHLRFFQLVFGTADKIPFGAVHFTVELPQFMMKYYCECIIMGLQFAM 179 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + ++ ++IG++ ++VPQI I+ I+ I +G + L L + + F Sbjct: 180 PIIVIELLAEVAIGIMMRVVPQINIFAINFQVKIIVGLVMLFLLFAPLSDMIDRVWRDMF 239 >gi|167574622|ref|ZP_02367496.1| flagellar biosynthetic protein FliR, putative [Burkholderia oklahomensis C6786] Length = 254 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 104/242 (42%), Gaps = 5/242 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M+ +PE ++ ++ CR+ + + P + S +P++ R+ ++ ++V LP + + Sbjct: 1 MSAAPE-MLSRIWWPFCRILAALSAAPIVGESTVPLRARVMLSLLLAVVALPAVAP---V 56 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + A + + ++ +G + G ++ G +I++ +GL + + + Sbjct: 57 EVAAFSARGALVAAEQILIGLLFGTMLHFTLAIFMMLGYLIASQMGLAMAVMNDPLNGTS 116 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ++S++ ++ +L + ID H V L S+ P+G ++ + + F Sbjct: 117 SDAISSVLLVVYMLLFFSIDAHLVVTQILYTSFRVWPVGSPVDL-LSLKPLLYQVGWLFA 175 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L++P +F +V I G L++ P I ++ + G L L + + + Sbjct: 176 STTLLATPIVFATLVLQIGKGYLSRATPGINLFSLGFAITTVFGLLMLGYMLPHLPDHYV 235 Query: 241 HS 242 Sbjct: 236 RL 237 >gi|296124297|ref|YP_003632075.1| type III secretion system inner membrane R protein [Planctomyces limnophilus DSM 3776] gi|296016637|gb|ADG69876.1| type III secretion system inner membrane R protein [Planctomyces limnophilus DSM 3776] Length = 334 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 3/192 (1%) Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 N +++ EL +G GL +++ GLQ G +I G L + Sbjct: 125 PTPPENLGQLVLVLLGELVIGLFLGLGVQMVLAGLQMAGQIIDQQGGFGLGEVFNPDLQM 184 Query: 120 AETPLNSLIGIIGLLALWVI---DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ 176 + L+ +G + V+ H + ++V+S+ +IP+G+ N++Q Sbjct: 185 NASQSGQLLFWLGTVIFLVLEPLGGHLVMLKSMVESFQSIPVGRAFWEPGTVELLNNLMQ 244 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +F + +R ++P + + + +IG L+ VPQI I + + L L Sbjct: 245 ASFSLAIRFAAPIMLVMCLVDAAIGFLSHTVPQINIQAVGFSLKAMVSLLLLITLFSTSP 304 Query: 237 YQFSHSFLYGFF 248 ++F FF Sbjct: 305 AVIVNAFQETFF 316 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 18/46 (39%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT 57 L++ R+ + P +P +R+ ++++ P + Sbjct: 21 FLLVLVRLSGLALTGPIFGAPAVPTNIRVLLIFVLALLVTPSIGHQ 66 >gi|167576638|ref|ZP_02369512.1| flagellar biosynthetic protein FliR, putative [Burkholderia thailandensis TXDOH] Length = 258 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 92/233 (39%), Gaps = 4/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + CR+ + + P + S +P ++R+ A+ +++ LP + + V A Sbjct: 11 WLARAWWPFCRILAALSAAPFIGESTVPARMRVMIALFLALIALPAVDP---VAIPVFSA 67 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G + G+L G ++++ +GL + + ++ Sbjct: 68 RGALVAAEQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGF 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + +L + +D H V L S+ P+G + F L++ Sbjct: 128 MLVTSILLFFAMDAHLVVVQVLYTSFRVWPVGSPIGLP-ALKPLAYQAAWLFSTTTLLAA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P +F +V I L++ P I ++ + + G L L ++ + ++ Sbjct: 187 PLVFATVVLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMVKGLPAHYA 239 >gi|322382376|ref|ZP_08056283.1| flagellar biosynthesis protein FliR [Paenibacillus larvae subsp. larvae B-3650] gi|321153729|gb|EFX46104.1| flagellar biosynthesis protein FliR [Paenibacillus larvae subsp. larvae B-3650] Length = 212 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 4/191 (2%) Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y + E+ +G G + ++ +Q GS I +G + + + Sbjct: 9 NPVTMDGTYLLAIFREILVGITLGFVAYLFFTAVQIAGSFIDIQMGFGIANVIDPMTGAS 68 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQ 176 L + +I L + HH + A++ SY +P+ E+ G + V Sbjct: 69 APILGNFKYMIATLLFLSFNGHHLLLQAIMNSYDWVPMTNEVFARVFEGQVSEWIVRSFT 128 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 T F + +L++P + ++ +GLL ++ PQ I+ + P+ + LG + L + + + Sbjct: 129 TMFGLAFQLAAPIAAALFLTDLGLGLLTRVAPQFNIFVVGAPFKMLLGFVLLLMLLPELG 188 Query: 237 YQFSHSFLYGF 247 F F F Sbjct: 189 SMFEKVFTTMF 199 >gi|167567198|ref|ZP_02360114.1| flagellar biosynthetic protein FliR, putative [Burkholderia oklahomensis EO147] Length = 254 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 104/242 (42%), Gaps = 5/242 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M+ +PE ++ ++ CR+ + + P + S +P++ R+ ++ ++V LP + + Sbjct: 1 MSAAPE-MLSRIWWPFCRILAALSAAPIVGESTVPLRARVMLSLLLAVVALPAVAP---I 56 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + A + + ++ +G + G ++ G +I++ +GL + + + Sbjct: 57 EVAAFSARGALVAAEQILIGLLFGTMLHFTLAIFMMLGYLIASQMGLAMAVMNDPLNGTS 116 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 ++S++ ++ +L + ID H V L S+ P+G ++ + + F Sbjct: 117 SDAISSVLLVVYMLLFFSIDAHLVVTQILYTSFRVWPVGSPVDL-LSLKPLLYQVGWLFA 175 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L++P +F +V I G L++ P I ++ + G L L + + + Sbjct: 176 STTLLATPIVFATLVLQIGKGYLSRATPGINLFSLGFAITTVFGLLMLGYMLPHLPDHYV 235 Query: 241 HS 242 Sbjct: 236 RL 237 >gi|188997533|ref|YP_001931784.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium sp. YO3AOP1] gi|188932600|gb|ACD67230.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium sp. YO3AOP1] Length = 257 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 108/238 (45%), Gaps = 2/238 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M + ++ LI R+ + M P +S IP V++ ++F+ + +++ Sbjct: 1 MVLITPDQATTVALIFSRIIAFFMAFPLISSPIIPHNVKVLLVVSFAYFTMLNFNIKLEI 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + + + L++ E+F+G G+++ ++ + +IS +GL + + Sbjct: 61 KEY-DLLVFLTLILKEVFIGFSLGIIVNIFIGAFSYAAEIISYLMGLTVLNMFNPAFG-Q 118 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L+ + ++ + AL KS+ IP+ +F + F+ Sbjct: 119 TSVLSGYFLFLFYFLFFISGAYQIFIGALFKSFEVIPLSSFNINNGVFEFIIKKSSDIFL 178 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 + +++ PF+ +VFNI + L+N+L+PQI ++ + P I +G + L + +I+ Sbjct: 179 LSFQMAFPFILVLLVFNIVLALINRLIPQINVFMVGLPAQIFIGFVILIFASSLIISV 236 >gi|323341372|ref|ZP_08081616.1| flagellar biosynthesis protein FliR [Lactobacillus ruminis ATCC 25644] gi|323091249|gb|EFZ33877.1| flagellar biosynthesis protein FliR [Lactobacillus ruminis ATCC 25644] Length = 252 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 88/232 (37%), Gaps = 3/232 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 LI CRV S + + P LS P +L + + V A + + Sbjct: 11 LIACRVFSFMSVAPILSERNFPNLCKLILGGGLILSAFSLAAAF---EEEVALAVFILMA 67 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E G G L R+ G+ TG I G + + + + + + + + Sbjct: 68 VKETIFGLAMGYLCRLVFFGVMITGQFIDFQDGFIMAQAYDPTMQSSTSQFGKMYYWLAI 127 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + + Q+ L+ S+ + +G V + TF + + +P + Sbjct: 128 MVFFASGLYRQMIRGLMTSFDIVSLGYPTLTDESIGGIVKLFAKTFEMAFNMGAPIIISI 187 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 +V +I +G+L++ +PQ+ + +S + + L + +V + +F Sbjct: 188 LVIDIVLGILSRSIPQLNVLMLSLNVKTTVSFIISMLVLPNMVDFLASNFSE 239 >gi|170022953|ref|YP_001719458.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis YPIII] gi|169749487|gb|ACA67005.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis YPIII] Length = 259 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 99/234 (42%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L+L R+ S + P + + ++ A+ +I++ P + + + ++ Sbjct: 14 LFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPVVSEELLSIEN 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L ++ G + G ++ + L+ G ++S +GL + + + ++ +I Sbjct: 74 LL-LAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQII 132 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +L + ++ H L+KS+ + PIG+ +N + S L L+ P Sbjct: 133 FTFSVLIFFTLNGHLLFVTILLKSFSSWPIGEAINDFS-LRSLALSLGWILSSATLLALP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F ++ S GLLN++ P + ++ + P + G L L L I + H Sbjct: 192 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 245 >gi|283782109|ref|YP_003372864.1| type III secretion system inner membrane R protein [Pirellula staleyi DSM 6068] gi|283440562|gb|ADB19004.1| type III secretion system inner membrane R protein [Pirellula staleyi DSM 6068] Length = 277 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 1/236 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ L++ R+G + +LP S +PMQ R A+A +++L P + N Sbjct: 12 IVIFSLVLTRIGMLVFILPMFGSSSVPMQARAILAIAIALILTPVYAGALPSPP-ENLMM 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ E LG GL + + G+Q GS+IS G+ L + + + L+ Sbjct: 71 LGLMLARESMLGLALGLAVMILLAGMQLAGSIISQMSGMTLADVANPTFDTSVPIFSQLL 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 ++ L + + H V AL+ ++ +P GQ + +F I +R ++P Sbjct: 131 EMLSLAIFFSLGGHRLVMSALLDTFKFMPPGQATFPEEAVEMLATIFTHSFEIGIRAAAP 190 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + ++ + + L+++ +PQ+ + + + L LS+ F Sbjct: 191 AIISLLLAILVVALISRTLPQLNSVAVGLNFNAMIVLAILALSLGSAAMVFQEELE 246 >gi|149178712|ref|ZP_01857295.1| flagellar biosynthetic protein fliR/B [Planctomyces maris DSM 8797] gi|148842410|gb|EDL56790.1| flagellar biosynthetic protein fliR/B [Planctomyces maris DSM 8797] Length = 329 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 53/278 (19%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ------- 61 + L++ R+ +++ P P +R+ ++ S+++ P L D + Sbjct: 29 FYAFTLVLVRISGLMIIGPVFGQPIFPTNIRILLILSLSLLITPTLHDQTTVGFYQLDSN 88 Query: 62 -------------------------------------------NFVNRAYYSKLVMVELF 78 + Y+ ++ EL Sbjct: 89 QDQRLSQDEVPEHLQDRFEDLVVTAGRQATRELTVNDYRFVTRMPNSLLDYAWSILGELT 148 Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138 LG GL I + L LQ G +I G+ L + + + IG+ + Sbjct: 149 LGFSLGLGIYIILLSLQMAGQMIDQQAGMALGEVFNPGFDMNASLSGQYLYFIGISVFLL 208 Query: 139 I---DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + + H + +L+ ++ P+G+ + N ++ + ++ +++++P L + Sbjct: 209 MEPVNGHLLMLSSLIDTFQVFPVGEGIVSTNTLDLLQTLMHQSLVLSIKVAAPLLAISAL 268 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 +IS+G L VPQI + I P + + L ++ Sbjct: 269 ISISMGYLGHTVPQINVLVIGFPIRAMISLIVLVFTLS 306 >gi|45442778|ref|NP_994317.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Microtus str. 91001] gi|51597655|ref|YP_071846.1| flagellar assembly/export protein, fliR [Yersinia pseudotuberculosis IP 32953] gi|108809077|ref|YP_652993.1| putative flagellar assembly protein [Yersinia pestis Antiqua] gi|108810730|ref|YP_646497.1| flagellar assembly protein [Yersinia pestis Nepal516] gi|145597799|ref|YP_001161875.1| flagellar assembly protein [Yersinia pestis Pestoides F] gi|166212074|ref|ZP_02238109.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. B42003004] gi|167466359|ref|ZP_02331063.1| flagellar assembly protein [Yersinia pestis FV-1] gi|218927894|ref|YP_002345769.1| putative flagellar assembly protein [Yersinia pestis CO92] gi|45437644|gb|AAS63194.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Microtus str. 91001] gi|51590937|emb|CAH22593.1| Putative flagellar assembly/export protein, fliR [Yersinia pseudotuberculosis IP 32953] gi|108774378|gb|ABG16897.1| flagellar assembly protein [Yersinia pestis Nepal516] gi|108780990|gb|ABG15048.1| putative flagellar assembly protein [Yersinia pestis Antiqua] gi|115346505|emb|CAL19381.1| putative flagellar assembly protein [Yersinia pestis CO92] gi|145209495|gb|ABP38902.1| flagellar assembly protein [Yersinia pestis Pestoides F] gi|166206820|gb|EDR51300.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. B42003004] Length = 257 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L+L R+ S + P + + ++ A+ +I++ P + + + + Sbjct: 12 LFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPV-VSGELLSIE 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L ++ G + G ++ + L+ G ++S +GL + + + ++ +I Sbjct: 71 NLLLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQII 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +L + ++ H L+KS+ + PIG+ +N + S L L+ P Sbjct: 131 FTFSVLIFFTLNGHLLFVTILLKSFSSWPIGEAINDFS-LRSLALSLGWILSSATLLALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F ++ S GLLN++ P + ++ + P + G L L L I + H Sbjct: 190 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 243 >gi|22127346|ref|NP_670769.1| flagellar biosynthetic protein [Yersinia pestis KIM 10] gi|150260267|ref|ZP_01916995.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162419491|ref|YP_001604863.1| flagellar biosynthetic protein FliR [Yersinia pestis Angola] gi|165925143|ref|ZP_02220975.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. F1991016] gi|165939015|ref|ZP_02227567.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. IP275] gi|166008694|ref|ZP_02229592.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. E1979001] gi|167398440|ref|ZP_02303964.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419022|ref|ZP_02310775.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425170|ref|ZP_02316923.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186896789|ref|YP_001873901.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis PB1/+] gi|229837390|ref|ZP_04457553.1| Flagellar biosynthesis protein fliR [Yersinia pestis Pestoides A] gi|229840603|ref|ZP_04460762.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842846|ref|ZP_04462998.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar Orientalis str. India 195] gi|229900927|ref|ZP_04516051.1| Flagellar biosynthesis protein fliR [Yersinia pestis Nepal516] gi|270487692|ref|ZP_06204766.1| putative flagellar biosynthetic protein FliR [Yersinia pestis KIM D27] gi|294502772|ref|YP_003566834.1| flagellar biosynthetic protein [Yersinia pestis Z176003] gi|21960429|gb|AAM87020.1|AE013950_5 putative flagellar biosynthetic protein [Yersinia pestis KIM 10] gi|149289675|gb|EDM39752.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162352306|gb|ABX86254.1| flagellar biosynthetic protein FliR [Yersinia pestis Angola] gi|165912971|gb|EDR31596.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. IP275] gi|165923343|gb|EDR40494.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. F1991016] gi|165992033|gb|EDR44334.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. E1979001] gi|166963016|gb|EDR59037.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050944|gb|EDR62352.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055933|gb|EDR65714.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699815|gb|ACC90444.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis PB1/+] gi|229682266|gb|EEO78358.1| Flagellar biosynthesis protein fliR [Yersinia pestis Nepal516] gi|229690113|gb|EEO82170.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar Orientalis str. India 195] gi|229696969|gb|EEO87016.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705513|gb|EEO91523.1| Flagellar biosynthesis protein fliR [Yersinia pestis Pestoides A] gi|262360804|gb|ACY57525.1| flagellar biosynthetic protein [Yersinia pestis D106004] gi|270336196|gb|EFA46973.1| putative flagellar biosynthetic protein FliR [Yersinia pestis KIM D27] gi|294353231|gb|ADE63572.1| flagellar biosynthetic protein [Yersinia pestis Z176003] gi|320016729|gb|ADW00301.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 259 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L+L R+ S + P + + ++ A+ +I++ P + + + + Sbjct: 14 LFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPV-VSGELLSIE 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L ++ G + G ++ + L+ G ++S +GL + + + ++ +I Sbjct: 73 NLLLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQII 132 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +L + ++ H L+KS+ + PIG+ +N + S L L+ P Sbjct: 133 FTFSVLIFFTLNGHLLFVTILLKSFSSWPIGEAINDFS-LRSLALSLGWILSSATLLALP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F ++ S GLLN++ P + ++ + P + G L L L I + H Sbjct: 192 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 245 >gi|332187892|ref|ZP_08389625.1| flagellar biosynthetic protein FliR [Sphingomonas sp. S17] gi|332012053|gb|EGI54125.1| flagellar biosynthetic protein FliR [Sphingomonas sp. S17] Length = 257 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 95/230 (41%), Gaps = 2/230 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ ++ R+G+ + P IP+ VR+ A A + ++ F Sbjct: 9 EPQAWAILFLMIRIGAAFITAPVFGAVSIPLPVRVSLAGAIAFLVNSVHPVVPPPVIFSL 68 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 S V E +G GL+++V +I ++G+N ++ + + L Sbjct: 69 PTIMS--VAAEAIVGLALGLILQVAFTAPLVASELIGGSMGINFAATIDPLNGRSTQALG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 ++ L +D H + +VKSY +P G+ F + F+ L L Sbjct: 127 QFFTVMLTLLFLSVDGHLVLVDMIVKSYDALPPGRAWMAPAQFRAIALFGGYAFLAGLLL 186 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P F + N+ +G++++ P + ++ + P +G+G + + ++ + Sbjct: 187 ALPVGFLLLCLNLVVGMMSRAAPSLNLFSVGLPAALGVGVIAIAVAFPAM 236 >gi|254473504|ref|ZP_05086901.1| type III secretion system inner membrane R protein [Pseudovibrio sp. JE062] gi|211957620|gb|EEA92823.1| type III secretion system inner membrane R protein [Pseudovibrio sp. JE062] Length = 227 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 2/217 (0%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNRAYYSKLVMVELFLGCV 82 M +PG S + +QVRL A++ ++ + P + + + + + +++ VEL +G + Sbjct: 1 MAMPGFSSPRVMVQVRLFIAISATLAISPLILVLVEPIISAASLDELLRIIFVELLIGFL 60 Query: 83 HGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFH 142 R + LQ + A N Q + + + P+ LI + L++ H Sbjct: 61 IAAFGRAFFGMLQMMAGAAANASSFN-QPAPIVEEFQQLPPMAGLITLTATAMLFITGAH 119 Query: 143 HQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGL 202 VF L +SY IP+G + F L ++ LR++SPFL + IV N+++GL Sbjct: 120 ADVFIGLAESYQAIPVGGDFVPSAAVDQFSTKLMQGLLLALRITSPFLIYGIVVNLTLGL 179 Query: 203 LNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 N+L+PQ+P+YF++ P ++ G L I ++ F Sbjct: 180 TNRLMPQMPVYFVALPVVVMGGLFVLWQIITELLRLF 216 >gi|310816837|ref|YP_003964801.1| flagellar biosynthetic protein FliR [Ketogulonicigenium vulgare Y25] gi|308755572|gb|ADO43501.1| flagellar biosynthetic protein FliR [Ketogulonicigenium vulgare Y25] Length = 259 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 114/242 (47%), Gaps = 2/242 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + FL+ R G+ LLP +P+++RL A+A +++ L + V Sbjct: 12 EPVGFAAFLVFLRAGAFCALLPAFGEQTLPLRLRLSVAIAMTMITL-PAVLPLMPPPPVQ 70 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + L++ E+ G + GL +R+ L+ G++ + ++G+ G++ + + + Sbjct: 71 ISQMGALLLTEIGAGLIFGLSLRLLVWALETAGAIAAQSVGVAQIFGPGMT-AEPSSAFS 129 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + G + Q ++ SY I G + + + +F + +RL Sbjct: 130 QIFIMAGFALACAMGLPVQAVAMMIGSYNVISPGIFPAPDMLAQAILPGFSESFSLAVRL 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++PF +++N+++G +N+ +PQ+ + F+ P L G+G + L L+ +++ + + Sbjct: 190 AAPFFIAGLLYNLTLGFVNRAMPQMMVTFVGAPALTGIGIVLLLLASPVLLGIWVRALGA 249 Query: 246 GF 247 F Sbjct: 250 AF 251 >gi|153947704|ref|YP_001399616.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP 31758] gi|152959199|gb|ABS46660.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP 31758] Length = 257 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 2/234 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L+L R+ S + P + + ++ A+ +I++ P + + + + Sbjct: 12 LFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPV-VSRELLSIE 70 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L ++ G + G ++ + L+ G ++S +GL + + + ++ +I Sbjct: 71 SLLLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQII 130 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 +L + +D H ++KS+ + PIG+ +N + S L L+ P Sbjct: 131 FTFSVLIFFTLDGHLLFVTIVLKSFSSWPIGEAINDFS-LRSLALSLGWIISSATLLALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 F ++ S GLLN++ P + ++ + P + G L L L I + H Sbjct: 190 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 243 >gi|167626136|ref|YP_001676430.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis HAW-EB4] gi|167356158|gb|ABZ78771.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis HAW-EB4] Length = 232 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 3/224 (1%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83 M++P L +YIP VR+ A++ S ++ P L + +A L + +L +G + Sbjct: 1 MVMPFLGNAYIPATVRILLAISISALIAPMLPPFPAVDAISFQAL--ILAVEQLLIGFML 58 Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 L + + + G+++S +GL++ S A L + G L +D H Sbjct: 59 ALFLSIMIHVMTLFGAMMSMQMGLSMAVMNDPSSGGANPILGLWFMLYGTLLFLALDGHL 118 Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203 LV S+ PIG + F + F L+ P + +V N++ G+L Sbjct: 119 VAIGILVDSFHLWPIGMGV-FDLPLMGLIARFSWIFAAAFMLALPAILAMLVVNLTFGVL 177 Query: 204 NKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ P + ++ + P + +G L + S + ++S L Sbjct: 178 SRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPTRYSDLCLDAL 221 >gi|237755397|ref|ZP_04584024.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium yellowstonense SS-5] gi|237692438|gb|EEP61419.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium yellowstonense SS-5] Length = 257 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 110/238 (46%), Gaps = 2/238 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M + +++ LI R+ + + P +S IP V++ ++F+ + +++ Sbjct: 1 MVLITPDQAITVALIFSRIIAFFLAFPLISSPIIPHNVKVLLVVSFAYFTMLNFNIKLEI 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + + + L++ E+F+G G+++ ++ + +IS +GL + + Sbjct: 61 KEY-DLLIFLTLILKEIFIGFSLGMIVNIFIGAFSYAAEIISYLMGLTVLNIFNPAFG-Q 118 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L+ + L ++ + AL KS+ IP+ +F + F+ Sbjct: 119 TSVLSGYFLFLFYLLFFISGAYQIFIGALFKSFEVIPLSSFNINNGVFEFIIKKSSDIFL 178 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 + +++ PF+ +VFNI + L+N+L+PQI ++ + P I +G + L + +I+ Sbjct: 179 LSFQMAFPFILVLLVFNIVLALVNRLIPQINVFIVGLPAQIFIGFVILIFASSLIISV 236 >gi|326386958|ref|ZP_08208571.1| flagellar biosynthetic protein FliR [Novosphingobium nitrogenifigens DSM 19370] gi|326208567|gb|EGD59371.1| flagellar biosynthetic protein FliR [Novosphingobium nitrogenifigens DSM 19370] Length = 260 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 84/230 (36%), Gaps = 2/230 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E ++ R+G+ ++ P + +P QVR+ + A ++ + W + + Sbjct: 12 EAEFWRFLFVMTRIGAALVAAPLFGNTGVPPQVRVIMSGAIAVFV--CGWTPVAAPPALL 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + E +G G +++V +I +G+++ ++ L Sbjct: 70 SLSGMLALAGETTIGLALGFVLQVAFAAPLIAAELIGAGMGMSIASAADPLSGSHSAVLG 129 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 G++ + I H +V+SY P G F+ L + Sbjct: 130 QYFGVVLTIVFLGIGGHIDWISLVVESYRVFPPGSAWMTPARLQLIDTFAADMFLTALAM 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P L +V I G++ + P + ++ + P + G L +S +I Sbjct: 190 ALPVLLLLLVVQIVTGVIGRSAPALNLFSLGLPAGVLAGITALIISAPLI 239 >gi|300693819|ref|YP_003749792.1| hrp conserved hrct protein, type III secretion system inner membrane protein [Ralstonia solanacearum PSI07] gi|299075856|emb|CBJ35165.1| Hrp conserved hrct protein, Type III secretion system inner membrane protein [Ralstonia solanacearum PSI07] Length = 282 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 83/231 (35%), Gaps = 4/231 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + +LP + + R A +I++ + L + A L E Sbjct: 30 VRIMTLFAILPATNDQMLTGVARNGVVYALAILVA--AGQPVGLAAHLGAAQLFMLTCKE 87 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +FLG G + G++I G N TP+ + + + + Sbjct: 88 IFLGACLGFAASTVFWVAETAGTIIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLFFYI 194 + + + +S+ P+G L N+ + + + F + ++L++P + + Sbjct: 148 YAAGGMLFLLGVVFESFQWWPLGAALPDMNVVAQSFLLQQTDSIFSMAVKLAAPVMMTVL 207 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + IGLL + ++ + P + L + + + Q + Y Sbjct: 208 LIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVKGTLTY 258 >gi|254228242|ref|ZP_04921671.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio sp. Ex25] gi|151939315|gb|EDN58144.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio sp. Ex25] Length = 261 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 94/239 (39%), Gaps = 4/239 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L + R+ +C + LP LS + VR + ++ + P + L + Sbjct: 9 TLFLYSLTLPRLMACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-SLPAEADG 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ E+ +G + G + + ++ G ++ G + + + TP Sbjct: 68 IWLIVILGKEVLIGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAV 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLR 184 L+ + + YAL KSY + PI + F + + + Sbjct: 128 LLTQTLITLFFSGGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVL 187 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +S+P + + + L+++ PQ+ ++F++ P + S+ L + + +++ F F Sbjct: 188 MSAPLVLAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGLMMDHFEVQF 246 >gi|224825750|ref|ZP_03698854.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002] gi|224601974|gb|EEG08153.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002] Length = 259 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 103/235 (43%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ +L+ CR + + + P P +VR+ A+A ++ LP L + F Sbjct: 11 LLPALWWPFCRFLAALAVAPLSGEGMTPARVRIGAALALAVASLPALRGMPAIDPFS--L 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y + + + +G + GL ++ L G ++S+ +GL++ + + +++L Sbjct: 69 YGIAVAVEQAIIGLIFGLAFQLVMAVLSLLGFLVSSQMGLSMAVMNDPGNGNSSDVVSTL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++G + + +D H + + S+ P+G ++ + N + + L+ Sbjct: 129 LYLLGAMVFFAVDGHLVLIQVVYTSFKAWPVGSGID-ALSLQTLANSVGWVLAAAILLAL 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P +F V I GL+N++ P + ++ + P + G L L + + Q+ Sbjct: 188 PAVFATFVVQIGFGLINRVAPALNLFSLGFPVVTLFGLGTLGLIVRFVPEQYLRL 242 >gi|83747849|ref|ZP_00944882.1| HrcT [Ralstonia solanacearum UW551] gi|207724593|ref|YP_002254990.1| hrp protein hrct [Ralstonia solanacearum MolK2] gi|207739228|ref|YP_002257621.1| hrp protein hrct [Ralstonia solanacearum IPO1609] gi|83725496|gb|EAP72641.1| HrcT [Ralstonia solanacearum UW551] gi|206589815|emb|CAQ36776.1| hrp conserved protein hrct [Ralstonia solanacearum MolK2] gi|206592601|emb|CAQ59507.1| hrp conserved protein hrct [Ralstonia solanacearum IPO1609] Length = 282 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 4/232 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + +LP + + R + +++ +L + L +N A L E Sbjct: 30 VRIMTLFAILPATNDQMLTGIARNG--VVYTLAILVAAGQPVGLAEHLNVAQLFILTCKE 87 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +FLG G + G++I G N TP+ + + + + Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGYNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLFFYI 194 + + + +S+ P+G L N + + + F ++L++P + + Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGASLPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTLL 207 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + IGLL++ ++ +S P + L + + + Q + Y Sbjct: 208 LIDAGIGLLSRAADKLEPASLSQPIKGAVALLMVMALVTALSTQVKGTLTYA 259 >gi|299069239|emb|CBJ40499.1| Hrp conserved hrct protein, Type III secretion system inner membrane protein [Ralstonia solanacearum CMR15] Length = 282 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 4/231 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + +LP + + R A +I++ + L ++ L E Sbjct: 30 VRIMTLFSILPATNDQMLTGVARNGVVYALAILVA--AGQPVGLAAHLSAGQLFMLTCKE 87 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +FLG G + G++I G N TP+ + + + + Sbjct: 88 IFLGACLGFAASTVFWVAETAGTIIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLFFYI 194 + + + +S+ P+G L N + + + F ++L++P + + Sbjct: 148 YAAGGMLFLLGVVFESFTWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTVL 207 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + IGLL + ++ + P + L + + + Q + Y Sbjct: 208 LIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVMALVSALSTQVKGTLTY 258 >gi|17549093|ref|NP_522433.1| Hrp conserved HRCT transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431344|emb|CAD18023.1| hrp conserved hrct transmembrane protein [Ralstonia solanacearum GMI1000] Length = 282 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 4/231 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + +LP + + R A +I++ + L ++ L E Sbjct: 30 VRIMTLFSILPATNDQMLTGIARNGVVYALAILVA--AGQPVGLAAHLSAGQLFMLTCKE 87 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +FLG G + G++I G N TP+ + + + + Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLFFYI 194 + + + +S+ P+G L N + + + F ++L++P + + Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTML 207 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + IGLL + ++ + P + L + + + Q + Y Sbjct: 208 LIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVKGTLTY 258 >gi|27904583|ref|NP_777709.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395828|sp|Q89AZ0|FLIR_BUCBP RecName: Full=Flagellar biosynthetic protein fliR gi|27903980|gb|AAO26814.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 257 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 3/237 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + +LF R+ + P + +I +++L A S + FL + + Sbjct: 11 LFIYNLFFPAVRILALFSTAPLFNSKFIEKKIKLIMAFVISWIFSSFL---PKVNIAIFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +++ ++ +G + GL +++ + +G +IS +GL+ + + + L+ Sbjct: 68 VDGILIIIEQMLIGILLGLTMQLIFSSIFMSGEIISLQMGLSFSSLFDFNSRSNLSALSH 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I LL + H + AL ++ TIPI + NIF VN + F + L Sbjct: 128 FVHIFLLLLFLEWNGHIWMLSALFDTFITIPIQKIYLDPNIFLKVVNFSKYIFFDSIMLL 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 P + ++ N+SIG+LN++ PQI I + + +G + L I I F Sbjct: 188 FPIIIVQLLLNLSIGILNRVAPQISILSLGFTVTLLVGIILLYFFIPIFPSSCIVIF 244 >gi|291519580|emb|CBK74801.1| Flagellar biosynthesis pathway, component FliR [Butyrivibrio fibrisolvens 16/4] Length = 237 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 3/215 (1%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 +++ P S+S P +V++ F+ S++L + N+ Y+ LV+ E G Sbjct: 2 FVVVAPFFSISNTPARVKIGFSALVSLLLYFVV--DFSALNYSTVVGYAFLVVREALTGL 59 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDF 141 + G + G++I IGL++ + T SL ++ L + Sbjct: 60 IIGFSTYCCNFIILLAGNMIDMNIGLSMAQEYDPTLRTETTITGSLYNNFIMILLVLSGM 119 Query: 142 HHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 H +F A ++ IPIG + ++F S + F+I R+ P ++ N + Sbjct: 120 HRYIFKAFCDAFTLIPIGGAIFRWDSLFKSTAIFMADVFVIAFRIILPVFAVIMLLNAIL 179 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 G+L K+ PQI ++ + I +G L L++ ++ Sbjct: 180 GILVKVAPQIHMFSVGAQMKIIVGFTILFLTVFLL 214 >gi|85058019|ref|YP_453721.1| flagellar biosynthesis protein FliR [Sodalis glossinidius str. 'morsitans'] gi|84778539|dbj|BAE73316.1| flagellar protein FliR [Sodalis glossinidius str. 'morsitans'] Length = 262 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 3/231 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 F + R+ + P LS I +V++ A+ ++++ P L V + L Sbjct: 15 FWPLARLLGLFVSAPLLSEKIIAKKVKIGLAVLITLLIAPGLEPVATPLVSVAGLW---L 71 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 +M +L +G + GL +++ ++F G VI +GL+ T + L+ ++ Sbjct: 72 IMAQLLIGVIVGLTLQLAFSTVRFAGEVIGLQMGLSFATFFDPFSGPNSPIIARLLNLLL 131 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 LL +D H + ALV S+ +PI G F + + F L L+ P + Sbjct: 132 LLLFLSLDAHLVMIDALVDSFQLLPIAPLPLNGESFLALARAVGLLFSCGLMLALPAMTL 191 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ NI++G+LN+L PQ ++ I P +G G L L L + ++ F Sbjct: 192 LLLLNITLGVLNRLTPQFSVFVIGFPLTLGGGLLALMLVMPLLATFAEGLF 242 >gi|262284523|gb|ACY41060.1| VscT [Vibrio alginolyticus] Length = 261 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 93/233 (39%), Gaps = 4/233 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L + R+ +C + LP LS + VR + ++ + P + L + + + Sbjct: 15 LTLPRLMACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-SLPAETDGIWLIMI 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + G + + ++ G ++ G + + + TP L+ Sbjct: 74 LGKEILIGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTL 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFL 190 + + YAL KSY + PI + F + + + +S+P + Sbjct: 134 ITLFFSGGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLMSAPLV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + L+++ PQ+ ++F++ P + S+ L + + I++ F F Sbjct: 194 LAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGIMMDHFEVQF 246 >gi|269967241|ref|ZP_06181305.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] gi|269828097|gb|EEZ82367.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] Length = 261 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 93/233 (39%), Gaps = 4/233 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L + R+ +C + LP LS + VR + ++ + P + L + + + Sbjct: 15 LTLPRLMACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQT-LPAETDGIWLIMI 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + G + + ++ G ++ G + + + TP L+ Sbjct: 74 LGKEVLIGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTL 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFL 190 + + YAL KSY + PI + F + + + +S+P + Sbjct: 134 ITLFFSGGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLMSAPLV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + L+++ PQ+ ++F++ P + S+ L + + I++ F F Sbjct: 194 LAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGIMMDHFEVQF 246 >gi|83718195|ref|YP_438367.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis E264] gi|167614813|ref|ZP_02383448.1| flagellar biosynthetic protein FliR, putative [Burkholderia thailandensis Bt4] gi|257141398|ref|ZP_05589660.1| flagellar biosynthetic protein FliR, putative [Burkholderia thailandensis E264] gi|83652020|gb|ABC36084.1| flagellar biosynthetic protein FliR, putative [Burkholderia thailandensis E264] Length = 258 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 94/233 (40%), Gaps = 4/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + CR+ + + P + S +P ++R+ A+ +++ LP + + V A Sbjct: 11 WLARAWWPFCRILAALSAAPFIGESTVPARMRVMIALLLALIALPAVDP---VAIPVFSA 67 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + ++ +G + G+L G ++++ +GL + + ++ Sbjct: 68 RGALVAAEQILIGLLFGMLFHFMQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGF 127 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + +L + ID H V L S+ P+G ++ + F L++ Sbjct: 128 MLVTSILLFFAIDAHLVVVQVLYTSFRVWPVGSPIDLPS-LKPLAYQAAWLFSTTTLLAA 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 P +F +V I L++ P I ++ + + G L L ++ + ++ Sbjct: 187 PLVFATVVLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMVKGLPAHYA 239 >gi|300697474|ref|YP_003748135.1| Hrp conserved hrct protein, type III secretion system inner membrane protein [Ralstonia solanacearum CFBP2957] gi|299074198|emb|CBJ53743.1| Hrp conserved hrct protein, Type III secretion system inner membrane protein [Ralstonia solanacearum CFBP2957] Length = 282 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 4/232 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + +LP + + R + +++ +L + L +N L E Sbjct: 30 VRIMTLFAILPATNDQMLTGIARNG--VVYTLAILVAAGQPVGLAEHLNAGQLFILTCKE 87 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +FLG G + G++I G N TP+ + + + + Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGYNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLFFYI 194 + + + +S+ P+G L + + + + F ++L++P + + Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGASLPDMSAVAQSFLLQQTDSIFSTAVKLAAPVMMTLL 207 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 + + IGLL++ ++ +S P + L + + + Q + Y Sbjct: 208 LIDAGIGLLSRAADKLEPASLSQPIKGAVALLMVMALVTALSTQVKGTLTYA 259 >gi|238782832|ref|ZP_04626861.1| Flagellar biosynthetic protein fliR [Yersinia bercovieri ATCC 43970] gi|238716255|gb|EEQ08238.1| Flagellar biosynthetic protein fliR [Yersinia bercovieri ATCC 43970] Length = 259 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 98/240 (40%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I+ F + R+ + P + I + ++ A+ ++++ P + ++ ++ Sbjct: 12 IINQFFWPMLRILALFSTAPIFNEKGIDRKTKVALAVIIALLIGPNIPNSHIEIFSISGI 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + +G GL +++ + ++ G +I +GL+ T + ++ + Sbjct: 72 WVG---AQQFIIGAAMGLTVQLIFVAVRNAGEIIGMQMGLSFATFYDPAAGGNMPVISRI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L + H + L S+ +PI + F F L L Sbjct: 129 LNLLVTLLFLTFNGHLWMLSILSDSFIVLPISENTLNPESFIYLARTAGLVFSSGLMLGL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN+L PQ+ I+ + P + +G + + + + + F + F Sbjct: 189 PIITLLLCLNLTLGLLNRLTPQLSIFVVGFPLTLSIGMMAMSMIMYTLSPFFENMLEVIF 248 >gi|167905063|ref|ZP_02492268.1| Flagellar biosynthesis pathway, component FliR [Burkholderia pseudomallei NCTC 13177] Length = 258 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 91/226 (40%), Gaps = 4/226 (1%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 CR+ + + P + S +P ++R+ A+ +++ LP + + V A + Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDP---VAIPVFSARGALAAA 74 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G + G+L G ++++ +GL + + ++ + + +L Sbjct: 75 EQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASIL 134 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ID H V L S+ P+G ++ + F L++P +F + Sbjct: 135 LFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPS-LKPLAYQAAWLFSTTTLLAAPLVFATV 193 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 V I L++ P I ++ + + G L L ++ + ++ Sbjct: 194 VLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYA 239 >gi|227873533|ref|ZP_03991778.1| possible flagellar biosynthesis protein FliR [Oribacterium sinus F0268] gi|227840623|gb|EEJ51008.1| possible flagellar biosynthesis protein FliR [Oribacterium sinus F0268] Length = 250 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 2/241 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ IV R+ I P + P + R S + + + + Sbjct: 1 MLVLFSFIVMRMTGAIAFNPVFGRTDYPRRARAALIFMLSAICYVHIGGELH-HMPGSIL 59 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y +++ ELF+G G + + L+F S++ ++GLN+ T L Sbjct: 60 EYGFMLLKELFVGFCLGFAMELAFTCLRFATSIMDFSMGLNMAQVFDPQSGSQATVSTGL 119 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLS 186 +L + +D H + L ++ T P G + + +++ + + L L+ Sbjct: 120 FYGFMMLLFFSMDGHLRFLELLFQTIDTHPFGGISIKLLLMPKLMLSLFVASMKMGLELA 179 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ I++G+L +++PQI I+ ++ I LG L + I + + Sbjct: 180 FPIMGLELMSEIALGILMRIIPQINIFAVNFQLKIILGFSMLYFLLIPITDKMKDFIAFA 239 Query: 247 F 247 F Sbjct: 240 F 240 >gi|219566962|dbj|BAH04993.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] Length = 282 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 4/231 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + +LP + + R A +I++ + L ++ L E Sbjct: 30 VRIMTLCSILPATNDQMLTGIARNGVVYALAILVA--AGQPVGLAAHLSAGQLFMLTCKE 87 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +FLG G + G++I G N TP+ + + + + Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLFFYI 194 + + + +S+ P+G L N + + + F ++L++P + + Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTML 207 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + IGLL + ++ + P + L + + + Q + Y Sbjct: 208 LIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVKGTLTY 258 >gi|302338095|ref|YP_003803301.1| flagellar biosynthetic protein FliR [Spirochaeta smaragdinae DSM 11293] gi|301635280|gb|ADK80707.1| flagellar biosynthetic protein FliR [Spirochaeta smaragdinae DSM 11293] Length = 266 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 100/238 (42%), Gaps = 3/238 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L L+ R+ + + + P +S S +P VR A+ SI++ P++ ++ Y+ Sbjct: 13 LLLLFARIFAMLAVAPVMSSSAVPGIVRAVLALLSSIIIYPWVAESGYPIP-EAALQYAM 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G V G ++ V G S +G + + + ++ Sbjct: 72 LLLGEVLIGVVIGFMMTVVFTVFLVAGQFFSFQMGFGASEVYDPLAQVEIPLMGQFLNLV 131 Query: 132 GLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFGNIFSSF-VNMLQTTFMIMLRLSSPF 189 +L + D Y ++ S+ ++ L F++ V + F + +S P Sbjct: 132 AMLVFLINDGLRKLFLYGVLGSFQSLRAWDLLERRQQFATLAVRSMVDLFRQAMIISFPI 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L ++ ++++GLL K PQ+ + + P I + + +++ ++ F GF Sbjct: 192 LGTMLLVSVALGLLAKAAPQMNLLMLGFPLKIAIAFFMMFVTMPFLMEAFGKMIDAGF 249 >gi|163781851|ref|ZP_02176851.1| flagellar biosynthetic protein FliR [Hydrogenivirga sp. 128-5-R1-1] gi|159883071|gb|EDP76575.1| flagellar biosynthetic protein FliR [Hydrogenivirga sp. 128-5-R1-1] Length = 254 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 106/235 (45%), Gaps = 3/235 (1%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M ++++ L+ RV + + ++P ++P +R+ A A + +L F ++ Sbjct: 1 MITVDTNSLLTILLLFFRVFAFMFMVPMFGTFFLPNIIRVYLAFAVAASILMF--SDLEP 58 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + +SKL + E+ G + G +R+ + G VI+ GL Sbjct: 59 LQISSALEFSKLALQEVIFGFLSGFFLRLLFDTVFVAGEVIAVNTGLGFLMMFLPQQP-Q 117 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 T L ++ + V+ L +S+ ++PIG + +F+++ +F Sbjct: 118 TTVLAGFSTLMASTLFLAVGGAEAVYVGLAQSFNSVPIGSFDIYSMNGKAFLSLFYKSFS 177 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + ++L+ P L ++ NI + ++N+ +PQI ++ + P + +G L LS+ +I Sbjct: 178 LGVKLALPVLIAAMLTNIILAVINRFIPQINVFMVGLPLQVMVGLTVLLLSLPVI 232 >gi|34498064|ref|NP_902279.1| type III secretion system EscT protein [Chromobacterium violaceum ATCC 12472] gi|34103919|gb|AAQ60279.1| type III secretion system EscT protein [Chromobacterium violaceum ATCC 12472] Length = 257 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 93/229 (40%), Gaps = 4/229 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L L + R +L+P S + + +R + ++ LLP Sbjct: 7 WLPVLGLCMLRPLGVFLLMPLFSTANLGGALIRNSLVLMIALPLLPVYPQWQ--LPAAGA 64 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 Y L E+ +G + G + L G +I T G ++ + + + Sbjct: 65 WGYVLLAAGEICIGLMIGFCAAIPFWVLDMAGFLIDTMRGSSMASVLNPLLGQQSSLFGL 124 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIMLRL 185 L I + + +++ A+ +SY T+P G +++ S F Q + + LR Sbjct: 125 LFTQIFGVLFLISGGFNELLEAIYQSYVTLPPGAAIHYSPEALSFFYRQWQLMYELCLRF 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 S P + ++ ++++GL+N+ Q+ ++F+S P L L +S+ Sbjct: 185 SMPAIVVILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLMLIVSLSF 233 >gi|134280964|ref|ZP_01767674.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305] gi|125657195|gb|ABN48683.1| FliR [Burkholderia pseudomallei] gi|134247986|gb|EBA48070.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305] Length = 258 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 92/226 (40%), Gaps = 4/226 (1%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 CR+ + + P + S +P ++R+ A+ +++ LP + + V A + Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDP---VAIPVFSARGALAAA 74 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G + G+L G ++++ +GL + + ++ + + +L Sbjct: 75 EQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASIL 134 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ID H V L S+ P+G ++ + F + L++P +F + Sbjct: 135 LFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPS-LKPLAYQAAWLFSTTMLLAAPLVFATV 193 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 V I L++ P I ++ + + G L L ++ + ++ Sbjct: 194 VLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYA 239 >gi|126443144|ref|YP_001061220.1| flagellar biosynthesis pathway, component FliR [Burkholderia pseudomallei 668] gi|167725904|ref|ZP_02409140.1| Flagellar biosynthesis pathway, component FliR [Burkholderia pseudomallei DM98] gi|254182915|ref|ZP_04889508.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1655] gi|126222635|gb|ABN86140.1| flagellar biosynthesis pathway, component FliR [Burkholderia pseudomallei 668] gi|184213449|gb|EDU10492.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1655] Length = 258 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 91/226 (40%), Gaps = 4/226 (1%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 CR+ + + P + S +P ++R+ A+ +++ LP + + V A + Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDP---VAIPVFSARGALAAA 74 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G + G+L G ++++ +GL + + ++ + + +L Sbjct: 75 EQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASIL 134 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ID H V L S+ P+G ++ + F L++P +F + Sbjct: 135 LFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPS-LKPLAYQAAWLFSTTTLLAAPLVFATV 193 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 V I L++ P I ++ + + G L L ++ + ++ Sbjct: 194 VLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYA 239 >gi|254445194|ref|ZP_05058670.1| Bacterial export protein, family 1 [Verrucomicrobiae bacterium DG1235] gi|198259502|gb|EDY83810.1| Bacterial export protein, family 1 [Verrucomicrobiae bacterium DG1235] Length = 256 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 2/226 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ RV + P S IP+ ++ A AF++++ P + ++ N + + Sbjct: 10 FLLILTRVLGLFLAAPVFSHKSIPVIAKVTLAAAFAMMVFPMV--DHEVANPASIWSLTL 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 EL +G + G+ IR+ L F VI+ IGL + S ++ I Sbjct: 68 WFAKELTVGLMMGIAIRMVFFVLDFASHVITVEIGLQPGPAFDPGSSSSQGNPLGTIIYF 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L L + + + A ++S+ PIG + F I + + +P + Sbjct: 128 LGLMLLLSGSEYNMLRAFMRSFEIAPIGFFGLNSFAADFIILKTADIFRIGILMGAPIVA 187 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + N+ L K+VP++ ++ +S I LG+ L L++ ++ + Sbjct: 188 VNFLVNLVFATLGKVVPKLNVFILSFSARIFLGTTVLTLTVGLLAH 233 >gi|254299710|ref|ZP_04967159.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 406e] gi|157809532|gb|EDO86702.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 406e] Length = 258 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 91/226 (40%), Gaps = 4/226 (1%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 CR+ + + P + S +P ++R+ A+ +++ LP + + V A + Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVDP---VAIPVFSARGALAAA 74 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 ++ +G + G+L G ++++ +GL + + ++ + + +L Sbjct: 75 EQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASIL 134 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ID H V L S+ P+G ++ + F L++P +F + Sbjct: 135 LFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPS-LKPLAYQAAWLFSTTALLAAPLVFATV 193 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 V I L++ P I ++ + + G L L ++ + ++ Sbjct: 194 VLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYA 239 >gi|83646792|ref|YP_435227.1| flagellar biosynthesis pathway protein FliR [Hahella chejuensis KCTC 2396] gi|83634835|gb|ABC30802.1| Flagellar biosynthesis pathway, component FliR [Hahella chejuensis KCTC 2396] Length = 226 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 2/215 (0%) Query: 33 YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTL 92 +P ++R A +++++ F +Q + + EL LG L + Sbjct: 4 RLPGRIRFFLVCALALLMVRF-SPATGVQLPSSVVDMALACANELVLGLAMALGLHAAFT 62 Query: 93 GLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKS 152 Q G +I G M + + AE + +++ + +D HH V L S Sbjct: 63 VFQIAGRLIDFQSGFGAANIMNPATNSAEPLMGTILLFFATFVFFSMDAHHMVIKGLAYS 122 Query: 153 YGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPI 212 +P G L + F + F + L++P L + ++ + ++ + +PQ+ + Sbjct: 123 VAQVPPGSGLVRMD-FPGAMKQFGLMFSFAMVLAAPVLAVLFLLDVGVAVMARTMPQMNV 181 Query: 213 YFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 YF+ P + LG + LS++ + F F Sbjct: 182 YFLFLPLKVALGIIVTALSLKYLTPLIGEVFNSIF 216 >gi|148261121|ref|YP_001235248.1| type III secretion system inner membrane R protein [Acidiphilium cryptum JF-5] gi|326404522|ref|YP_004284604.1| flagellar biosynthetic protein FliR [Acidiphilium multivorum AIU301] gi|146402802|gb|ABQ31329.1| type III secretion system inner membrane R protein [Acidiphilium cryptum JF-5] gi|325051384|dbj|BAJ81722.1| flagellar biosynthetic protein FliR [Acidiphilium multivorum AIU301] Length = 259 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 104/238 (43%), Gaps = 7/238 (2%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 LI R+ S +M LP + P Q+R+ ++A + ++ P + + + + L Sbjct: 14 LLIFIRISSLVMALPFMGAGNAPPQIRIGLSIALTAIVAPLIVSGT-IGVPSSIPVFVFL 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V+ E+ +G G L L L G +IS +GL+ + T + + + ++ Sbjct: 73 VLREIVVGLSLGWLTAAIMLSLPVAGQIISYQMGLSSVLLPNVEIGPNSTLVANALSVML 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPI------GQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ A+++S+ IP+ G + V + F+ L L+ Sbjct: 133 PAVVFTTGLFMLPVLAIIRSFRVIPLTSTIIGAHLPPAGLLLGFAVRAVSAEFVTALHLA 192 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 +PFLF +++ +GL++K+ P + +YF++ P + G L + ++ + + L Sbjct: 193 APFLFIGLLWQAGLGLMSKVAPSMQVYFVAAPLQLLGGMFLLAILASPMLTVWQDAML 250 >gi|284007166|emb|CBA72450.1| flagellar biosynthesis protein FliR [Arsenophonus nasoniae] Length = 262 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 3/232 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 F RV + + P IP + ++ A+ +I++ Q + Sbjct: 17 FFWPFVRVLALFSIAPFFGEKQIPKKSKIALALLITILIS---AAIPLPQIPLFSVIGCW 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ ++ +G + GL +++ +++ G V+ +GL+ + + + ++ Sbjct: 74 ILIQQVLIGLLMGLTMQIAFAIVRYAGEVLGMQMGLSFALFVDPAAGPNMPIIARFFNLL 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 LL D H + L S+ IPI F F L L+ P L Sbjct: 134 LLLLFLSFDIHLWLLSLLADSFQLIPIQSISLNSQSFILVAQTAGIIFYYGLLLALPILT 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ NIS+G+LN++ PQ+ I+ + P + +G L L II F Sbjct: 194 LLLIINISLGILNRMTPQLSIFVVGFPLTLLIGIYLLPLLTTIITKYAEKIF 245 >gi|167841179|ref|ZP_02467863.1| type III secretion system EscT protein [Burkholderia thailandensis MSMB43] Length = 261 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 2/225 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L + R ++L+P S + + R +A S+ +L + + Sbjct: 9 WLPMVALSMLRPLGAMLLVPVFSTGTLGGTLARNALVLAISLPVLALHDLWPAVDGARSW 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A Y L EL +G V G V L G +I T G ++ + + + + Sbjct: 69 AAYLWLACGELSIGLVIGFCAAVPFWALDMAGFLIDTMRGASMASVLNPLLGQQSSMMGI 128 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIMLRL 185 + + L + H + AL SY T+P G F Q + + LR Sbjct: 129 VFSQVFSLLFMMFGGFHALLEALYASYLTLPPGAAFRFRPAALDFLGQQWQLMYTLCLRF 188 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + P + ++ ++++GL+N+ Q+ ++F++ P L + + Sbjct: 189 AMPAIVAILLVDMALGLVNRSAQQLNVFFVAMPIKSAFALLMMII 233 >gi|238752377|ref|ZP_04613855.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia rohdei ATCC 43380] gi|238709418|gb|EEQ01658.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia rohdei ATCC 43380] Length = 267 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 97/234 (41%), Gaps = 3/234 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L + R +++LP + + +R A ++ + P T + Sbjct: 7 WLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNGLVFAIALPVTPLFSPTSLVAQDTLT 66 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A++ L M EL +G + G + + + G +I T G + T S + + Sbjct: 67 AWFWVLCM-ELLIGVMIGFVAAIPFWAIDMAGFMIDTLRGATMSTLFNPSMGMESSIFGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN-MLQTTFMIMLRL 185 L + + + + V AL SY +P G + + F+ Q + + L Sbjct: 126 LFTQLLTVLFLISGGFNLVLSALYSSYDILPAGTIIQPSSAMLQFLQNEWQLMYELCLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + P L ++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ + Sbjct: 186 ALPALLVMVLADLSLGLINRSSQQLNVFFLAMPIKSALALFLLVISLPYALHHY 239 >gi|28898448|ref|NP_798053.1| translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] gi|153836300|ref|ZP_01988967.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus AQ3810] gi|260365108|ref|ZP_05777679.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus K5030] gi|260876609|ref|ZP_05888964.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus AN-5034] gi|260895030|ref|ZP_05903526.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus Peru-466] gi|260900959|ref|ZP_05909354.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus AQ4037] gi|28806665|dbj|BAC59937.1| translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] gi|149750575|gb|EDM61320.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus AQ3810] gi|308086001|gb|EFO35696.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus Peru-466] gi|308093591|gb|EFO43286.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus AN-5034] gi|308110707|gb|EFO48247.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus AQ4037] gi|308111490|gb|EFO49030.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio parahaemolyticus K5030] gi|328468939|gb|EGF39899.1| translocation protein in type III secretion [Vibrio parahaemolyticus 10329] Length = 261 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 96/233 (41%), Gaps = 4/233 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L + R+ +C + LP LS + +R + ++ + P + + L + + + Sbjct: 15 LTLPRLMACFIFLPILSKQMLGGAMIRNGVLCSLALFIFPVVNEQ-ALPAETDGLWLIVI 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ LG + G + + ++ TG ++ G + + + TP L+ Sbjct: 74 LGKEVLLGMLIGFVAAIPFWAIEATGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTL 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + YAL KSY T PI S F + Q + + +S+P + Sbjct: 134 ITLFFSGGGFVAFIYALFKSYTTWPILGFFPMVTDAWVSFFYDQFQQLMWLGVLMSAPLV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + L+++ PQ+ ++F++ P + S+ L + + +++ F F Sbjct: 194 LAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGLMMDHFEALF 246 >gi|269963168|ref|ZP_06177503.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832132|gb|EEZ86256.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 260 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 92/235 (39%), Gaps = 4/235 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L + R+ +C + LP L+ + VR + ++ + P + DL + + + Sbjct: 15 LTLPRLMACFIFLPILNKQTLGGTMVRNGVLCSLALFIFPMINQQ-DLPAETDGIWLMII 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ LG + G + + ++ G ++ G + + + TP L+ Sbjct: 74 LGKEVLLGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTL 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + YAL SY + P+ F + + + +S+P + Sbjct: 134 ITLFFSGGGFVAFIYALFNSYASWPVISFFPSVTEEWVHFFYAQFEQLMWLGVLMSAPLV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + L+++ PQ+ ++F++ P + S+ L + + +++ F F Sbjct: 194 LAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLALMMNHFQALFSE 248 >gi|296125238|ref|YP_003632490.1| flagellar biosynthetic protein FliR [Brachyspira murdochii DSM 12563] gi|296017054|gb|ADG70291.1| flagellar biosynthetic protein FliR [Brachyspira murdochii DSM 12563] Length = 267 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 8/241 (3%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LI+ R + +M+ P S + IP +++ A + + P + D I +Q Y Sbjct: 11 YLLIMVRFIAILMVAPLFSSNVIPNSIKMALAFIATATIFPLVAD-ISVQAAPTFMEYFL 69 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ E +G + G L+ + Q + +G + ++ + L L ++ Sbjct: 70 TLLNEALIGILIGFLMSIIFAAYQVMANFFEVQMGFGISETVDPISQVTVPVLGQLQSLV 129 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQ-------ELNFGNIFSSFVNMLQTTFMIMLR 184 +L ID V L S+ +P+ +F + + + + F I L Sbjct: 130 VVLIFIAIDGPSWVVRTLFYSFKAMPVLSDASKAVFASSFNGVIDRMIYYMSSLFSIALS 189 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L+ P + + ++S+GLL K PQ+ I + P IG+G + + I ++V F Sbjct: 190 LALPIMLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIGVGIVSYYILIPVLVSNFMRILE 249 Query: 245 Y 245 Y Sbjct: 250 Y 250 >gi|226327732|ref|ZP_03803250.1| hypothetical protein PROPEN_01605 [Proteus penneri ATCC 35198] gi|225203436|gb|EEG85790.1| hypothetical protein PROPEN_01605 [Proteus penneri ATCC 35198] Length = 220 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 3/191 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 F R+ + P S P + R+ A + ++ P L + + Sbjct: 16 FFWPFVRILALFSTAPLFSEKQTPKKFRIALAFLITALVAPGLPQSH---VPLFSLIAFW 72 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +++ ++ +G + GL +++ ++ G VI +GL+ T + S L + ++ Sbjct: 73 VLLQQILIGTILGLSMQLAFASVRHAGEVIGLQMGLSFATFVDPSGGPNMPILARIFNML 132 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 +L V D H + LV ++ +PIG + + V T F+ + L+ P + Sbjct: 133 TMLLFMVFDGHLWLLSILVDTFYVVPIGNQTFNSLGILTLVQSGGTLFINGMMLAMPLIT 192 Query: 192 FYIVFNISIGL 202 +V N+S+G+ Sbjct: 193 LLLVLNLSLGI 203 >gi|212702655|ref|ZP_03310783.1| hypothetical protein DESPIG_00683 [Desulfovibrio piger ATCC 29098] gi|212673927|gb|EEB34410.1| hypothetical protein DESPIG_00683 [Desulfovibrio piger ATCC 29098] Length = 278 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 97/249 (38%), Gaps = 10/249 (4%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L + R+ + + + P L + + Q+RL +A + L P + + + ++ Sbjct: 14 GHLTALLLGMPRLFALVTVAPFLGSAVVTGQIRLLLVLALYLPLHPVIVSHLTDEITLSA 73 Query: 67 AY-------YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 A + L++ E LG + G L + +Q G + G + I Sbjct: 74 ALSLAVGGRLALLLLKEAVLGLMIGFLAGIVFWTVQSAGFFMDNQRGATMAEGADILSGD 133 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQ 176 +PL L+ + + + SYG P+ Q L F + Sbjct: 134 QSSPLGQLLFQSLVYIFYTSGAFLAFVGLVYASYGIWPVTQLLPLDVPQGAPLYFAEKVG 193 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ML L+ P ++ ++++GL+N+ Q+ +Y ++ P G+ + LC +++ Sbjct: 194 WLMGHMLLLAGPIAAACLLTDVALGLINRFASQLNVYVLAMPIKCGIAAFLLCFYFGLLL 253 Query: 237 YQFSHSFLY 245 F + Sbjct: 254 SHAPELFDF 262 >gi|119947197|ref|YP_944877.1| flagellar biosynthetic protein FliR [Psychromonas ingrahamii 37] gi|119865801|gb|ABM05278.1| flagellar biosynthetic protein FliR [Psychromonas ingrahamii 37] Length = 259 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 96/239 (40%), Gaps = 3/239 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + R+ M P +PM+VRL A+ ++++ P + + F +A Sbjct: 11 WLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQPAIDPFSLQA 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + +L G G L +++ G IS +GL + ++ ++ + L Sbjct: 71 --IILSVTQLLWGLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGVSVAIIGRL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 L D H + +V+S+ PI Q + G++ ++M+ F ++ Sbjct: 129 FLFACTLLFLAFDGHLAILALMVESFTIWPIKQGFSLGSLA-LIISMMVWMFASAFAIAI 187 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 P + ++ N S G +NK P + ++ + P + LG L +S I + + Sbjct: 188 PAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIYFEILMQA 246 >gi|269105052|ref|ZP_06157747.1| type III secretion protein SpaR [Photobacterium damselae subsp. damselae CIP 102761] gi|268160687|gb|EEZ39185.1| type III secretion protein SpaR [Photobacterium damselae subsp. damselae CIP 102761] Length = 260 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 91/235 (38%), Gaps = 4/235 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L + R+ +C + LP L+ + VR + ++ + P + DL + + + Sbjct: 15 LTLPRLMACFIFLPILNKQTLGGTLVRNGVLCSLALFIFPMINQQ-DLPAETDGIWLMVI 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ LG + G + + ++ G ++ G + + + TP L+ Sbjct: 74 LGKEVLLGMLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTL 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + YAL SY + P+ F + + + +S+P + Sbjct: 134 ITLFFSGGGFVTFIYALFNSYSSWPVISFFPTVTEEWVHFFYAQFEQLMWLGVLMSAPLV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + L+++ PQ+ ++ ++ P + S+ L + + +++ F F Sbjct: 194 LAMFLAEFGLALISRFAPQLNVFSLAMPIKSAIASVLLIVYLALMMDHFQALFSD 248 >gi|283834478|ref|ZP_06354219.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC 29220] gi|291070025|gb|EFE08134.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC 29220] Length = 260 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 100/235 (42%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ R+ + I P L + + +++R+ ++A + ++ P + + + + Sbjct: 12 LILGMWFPFVRIMAFIHYAPVLDNAALTIRIRIILSLALAFIITPLIP--HPVPDNLLSI 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + G + GL+++ L LQ G ++S +G+++ S + T L + Sbjct: 70 NSIILTAEQFLWGMLFGLMLQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEM 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 I I ++ + +D H + L K + PIG L+ + + L L+ Sbjct: 130 INIYAVILFFAMDGHLLLVSILFKGFTYWPIGNALHPQS-LRTISLALGWVLAAATLLAL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P F ++ GLLN++ P + +Y + P + G + + + + H Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLYSLGFPINMLAGLICFATLLYNLPDHYLHL 243 >gi|126730128|ref|ZP_01745940.1| flagellar biosynthetic protein FliR [Sagittula stellata E-37] gi|126709508|gb|EBA08562.1| flagellar biosynthetic protein FliR [Sagittula stellata E-37] Length = 256 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 106/230 (46%), Gaps = 3/230 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + R+ + + +LP I ++VRL A+ ++V+ P I+L A + + Sbjct: 19 LAVFLRIAAVLAILPAFGEQVISVRVRLVLALLLTVVVTPAAAPLIELPPPSFGA-FLRA 77 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E G G+++R + +Q G++ + + L+ +G + + ++ + G Sbjct: 78 LATETISGLFLGIMLRTFVFAIQTAGAIAAQSTSLS--QLLGQAGMDPLPAIGHILTMAG 135 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 L L FH V +V SY +P + N +I + + +F + L++PF+ Sbjct: 136 LALLMATGFHVNVAAFIVLSYDILPFMEFPNAASIAEAGRARVAQSFGLAFSLAAPFVIL 195 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 +++N+++G +NK +PQ+ + F+ P + L +S ++ + + Sbjct: 196 SVIYNLTLGAINKAMPQLMVAFVGAPVITFGAIATLLVSAPFMLSVWLTA 245 >gi|115377838|ref|ZP_01465026.1| flagellar biosynthesis protein FliR, putative [Stigmatella aurantiaca DW4/3-1] gi|115365170|gb|EAU64217.1| flagellar biosynthesis protein FliR, putative [Stigmatella aurantiaca DW4/3-1] Length = 222 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 93/212 (43%), Gaps = 5/212 (2%) Query: 40 LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGS 99 + + S+VL P + D + + Y L++ E+F+G ++ + + G+ Sbjct: 1 MGVGVTLSLVLFPSVADRMGALP-TSALPYIALLLKEVFIGVSLAFIVNIIFDAARVAGT 59 Query: 100 VISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG 159 ++ T G N + +SL + ++ +D HH V AL S+ +P+ Sbjct: 60 LVDTMAGSNNAQLYVPQLGQQVSLFSSLKVQLSVVLFLTLDGHHIVISALADSFAIVPLD 119 Query: 160 QELNFGNIFSSFVNMLQTTF----MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFI 215 F +F ++ F I L L++P + + ++++G +N++ P + ++FI Sbjct: 120 SFPKFSKGTWAFFEVISRAFANLLAISLSLAAPQMLSAFLTDLAMGAVNRVAPNLQVFFI 179 Query: 216 STPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + L L++ +++ +F F++ Sbjct: 180 AMAIKPMVSVLIAALALHMLIGRFQSEFVHML 211 >gi|153832525|ref|ZP_01985192.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio harveyi HY01] gi|156974013|ref|YP_001444920.1| Type III secretory pathway, component EscT [Vibrio harveyi ATCC BAA-1116] gi|41834186|gb|AAS13324.1| VscT [Vibrio harveyi] gi|148871320|gb|EDL70192.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio harveyi HY01] gi|156525607|gb|ABU70693.1| hypothetical protein VIBHAR_01724 [Vibrio harveyi ATCC BAA-1116] Length = 260 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 91/235 (38%), Gaps = 4/235 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L + R+ +C + LP L+ + VR + ++ + P + DL + + + Sbjct: 15 LTLPRLMACFIFLPILNKQTLGGTLVRNGVLCSLALFIFPMINQQ-DLPAETDGIWLMVI 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ LG + G + + ++ G ++ G + + + TP L+ Sbjct: 74 LGKEVLLGMLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTL 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + YAL SY + P+ F + + + +S+P + Sbjct: 134 ITLFFSGGGFVAFIYALFNSYSSWPVISFFPTVTEEWVRFFYAQFEQLMWLGVLMSAPLV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + L+++ PQ+ ++ ++ P + S+ L + + +++ F F Sbjct: 194 LAMFLAEFGLALISRFAPQLNVFSLAMPIKSAIASVLLIVYLALMMDHFQALFSD 248 >gi|317486797|ref|ZP_07945613.1| bacterial export protein, family 1 [Bilophila wadsworthia 3_1_6] gi|316921960|gb|EFV43230.1| bacterial export protein, family 1 [Bilophila wadsworthia 3_1_6] Length = 273 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 98/244 (40%), Gaps = 8/244 (3%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ---NFVN 65 +++L + + R+ + + P + + + Q+R A ++L P + ++ + Sbjct: 16 LLALLVGMPRLFMLVQVAPFMGGNILTGQLRTTVVFACYLILHPAIVASLPETQGLSPST 75 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A Y +++ E +G + G L + +Q G I G ++ +PL Sbjct: 76 FALYGAILVKETLIGMLLGYLSGMLFWTIQCAGFFIDNQRGASMAEGADPLSGEQTSPLG 135 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-----NIFSSFVNMLQTTFM 180 S + + + + SY P+ Q + N+ F + + Sbjct: 136 SFFFQSAVYLFFSTGAFLALLGVVYASYEIWPVTQLIPLSVFKDINLPLFFAGRVSWLLL 195 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +ML LS P + ++ ++S+GL+N+ Q+ +Y ++ P G+ + + +++ + Sbjct: 196 MMLLLSGPIVVACLLTDVSLGLINRFASQLNVYVLAMPIKSGVAAFLMLFYFMMLLSNAT 255 Query: 241 HSFL 244 F Sbjct: 256 GLFD 259 >gi|206889278|ref|YP_002249864.1| putative flagellar biosynthetic protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741216|gb|ACI20273.1| putative flagellar biosynthetic protein-like protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 243 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 14/236 (5%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 S + RV + LP + +P+ R FA++ S+ ++PF+ V Sbjct: 11 FYSFIPVFIRVSIILFFLPYIGSRTVPIMFRFFFALSISLAIIPFIH--------VKEEN 62 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + G G+++RV ++ +S IG + PL+ Sbjct: 63 LLISLFNAVVFGMAIGIMVRVIIAAVEIASQWMSMQIGFTIANVFNPQFGELMGPLSIFY 122 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + + +D H +VK++ + + + F + L+L++P Sbjct: 123 EMFTIALFFSLDLHLSFVEMIVKTFE------FPIKFSFSGNIIAFSYIMFPLALKLAAP 176 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L ++ NI +G L++++PQ ++F+ P L+ G + LSI I S +F+ Sbjct: 177 VLLVQVLMNIGLGFLSRIMPQANVFFVGFPLLLATGIAVMWLSIPIFTMVLSKAFI 232 >gi|152990383|ref|YP_001356105.1| flagellar biosynthetic protein FliR [Nitratiruptor sp. SB155-2] gi|151422244|dbj|BAF69748.1| flagellar biosynthetic protein FliR [Nitratiruptor sp. SB155-2] Length = 255 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 109/226 (48%), Gaps = 2/226 (0%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L+ RVG+ + LP + +YIP +++ +AFS L+ L D + V ++ + Sbjct: 12 ILVFFRVGAIFLSLPVFNANYIPSNIKILLILAFSFYLIQNLTIYYDF-SKVTLMQFTLM 70 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ E+ LG GLL+ ++ + +IS +G + + + L+ L ++ Sbjct: 71 ILKEILLGFSIGLLVSIFVAAFTYAAEIISYFMGFTIVNVFDPTYG-QVSILSRLFIMLF 129 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + +V D +H +++KS+ IP+ Q + F+ F + +LS PF Sbjct: 130 FILFFVTDAYHIFIISIIKSFSYIPLVQTSYPDSFFTYLFEKSSLIFTLSFQLSFPFALI 189 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 + N+++ L+N+L+PQI ++ + P I +G + L + ++V Sbjct: 190 VYLINLALALVNRLIPQINVFIVGLPLQIFVGIVALMIGAGVLVSV 235 >gi|257457601|ref|ZP_05622768.1| flagellar biosynthetic protein FliR [Treponema vincentii ATCC 35580] gi|257444987|gb|EEV20063.1| flagellar biosynthetic protein FliR [Treponema vincentii ATCC 35580] Length = 266 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 3/238 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL+ R+ + I P LS +P ++ A +++P + + L Y+ Sbjct: 16 FFLVCVRIFAMISTTPLLSTRAVPRIAKISLAGLIGFLVMPVAYGS-PLDVQGFNLDYAL 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E LG + G I + G S +G + + + + I Sbjct: 75 LVVGEALLGVLTGFFISIIFASFSTAGQFFSYQMGFGVSEVYDALAQIENPLMGQFLNFI 134 Query: 132 GLLALWVI-DFHHQVFYALVKSYGTIPIGQELNFGNIFSSF-VNMLQTTFMIMLRLSSPF 189 +L I F +++S+ +I L + +SF V L + F+ + ++ P Sbjct: 135 AVLIFLQIKGFQTLFLGGVLRSFQSINCFMFLEKRELVASFLVTNLGSLFLNAMMIAMPV 194 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++S+GLL+K PQ+ + P I L L +S+ + F GF Sbjct: 195 MGTLFLVHVSMGLLSKAAPQMNLLSEGFPITILLTFFLLTVSLPFMANFFIRIMENGF 252 >gi|6066713|emb|CAB58259.1| HrpC protein [Ralstonia solanacearum] gi|1097292|prf||2113360U hrpC gene Length = 282 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 82/231 (35%), Gaps = 4/231 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + +LP + + R A +I++ + L ++ L E Sbjct: 30 VRIMTLFSILPATNDQMLTGIARNGVVYALAILVA--AGQPVGLAALLSAGQLFMLTCKE 87 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +FLG G + G++I G N TP+ + + +G+ L Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLGVTLL 147 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLFFYI 194 + + + +S+ P+G L N + + + F ++L++P + + Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTML 207 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 + + IG + + ++ + P + L + + + Q + Y Sbjct: 208 LIDAGIGFVARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVKGTLTY 258 >gi|167568048|ref|ZP_02360964.1| type III secretion system EscT protein [Burkholderia oklahomensis EO147] Length = 260 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 92/226 (40%), Gaps = 3/226 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + + R +M++P + + VR + ++ +LP Sbjct: 7 WLPIVAIAMLRPFGALMIVPVFTPGTLGGSLVRNALVLMIALPVLPVHDAWPAFSPEAGG 66 Query: 67 AY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A Y +L EL +G + G + L G +I TA G ++ + + +P Sbjct: 67 APHYLRLAFGELCVGALIGFCAAIPFWALDMAGFLIDTARGASMASVLNPLLGAQSSPFG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLR 184 + + L V + + + SY T+P G L FG + + Q + + LR Sbjct: 127 MVFSQVFTLLFLVSGGFNTLIETIYASYVTLPPGAPLRFGPDALALLTQQWQLMYELCLR 186 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + P L ++ ++++GL+N+ Q+ ++F+S P L L + Sbjct: 187 FAMPALAAILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLLLVM 232 >gi|83646010|ref|YP_434445.1| type III secretory pathway subunit EscT [Hahella chejuensis KCTC 2396] gi|83634053|gb|ABC30020.1| Type III secretory pathway, component EscT [Hahella chejuensis KCTC 2396] Length = 261 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 102/241 (42%), Gaps = 4/241 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + F+ R+ + M+LP LS + +R A +FS++ P + +D Q + Sbjct: 9 TLFVFFMSSARMLAMFMMLPFLSKQSLGGAMIRNGVAASFSLITYPLVEHGLDAQTL-DG 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +++ E+ +G G ++ + ++ G I G + +++ +PL Sbjct: 68 LHLLLIIVKEVGIGLAMGFVLVMPFWAIESVGFFIDNQRGATMASALNPLSGSQTSPLGI 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLR 184 L+ + ++ + YAL KSY P+ + L + + F+ L T + + Sbjct: 128 LLTQSLVTLFFISGTFLLMLYALYKSYSVWPVFEFLPSFPVSGPAFFLAQLDTMMRLTVL 187 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 L +P + + + L+++ PQ+ ++ ++ P +G LC+ ++ FS Sbjct: 188 LGAPVVIVMFLTEFGLALISRFAPQLNVFILAMPLKSAVGLALLCVYAGFVIRYFSELLA 247 Query: 245 Y 245 Sbjct: 248 D 248 >gi|289808549|ref|ZP_06539178.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 178 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 3/169 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS IP +V+L + ++V+ P L + Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L M ++ +G G ++ ++ G I +GL+ T + L L + Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ 176 + ++ +L + H + LV ++ T+PIG N F + Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGG 177 >gi|221209599|ref|ZP_03582580.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD1] gi|221170287|gb|EEE02753.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD1] Length = 270 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 82/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L ++ R+ + ++P + + VR A+ + + P + + Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIASFVAPAIDAAQ--VASLPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 VTWCVLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++ Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVV 241 >gi|58039958|ref|YP_191922.1| flagellar biosynthetic protein FliR [Gluconobacter oxydans 621H] gi|58002372|gb|AAW61266.1| Flagellar biosynthetic protein FliR [Gluconobacter oxydans 621H] Length = 284 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 113/248 (45%), Gaps = 12/248 (4%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + ++ L++ R G+ +M++PGL +PM +R A+ +++LLP + + + Sbjct: 26 VWALAFVLVLSRTGAVVMVMPGLGEQSMPMMIRAGCAITLTVLLLPLVAPLLMQDHLDAL 85 Query: 67 AYYSK--LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 A ++ VELF G + G + R+ + L G +I+ +G++ + Sbjct: 86 APLGLCGMIAVELFAGILIGWMARLICMALPIAGQIIAVCMGISSVLQPDPDLGSGSSAP 145 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL----------NFGNIFSSFVNM 174 + ++ L L V + A++ SY IP G L G+ + + Sbjct: 146 ARFLNLLAPLVLLVTGAYILPVRAILGSYSIIPPGGALLAAASHAHWNLLGDSAQGIIQL 205 Query: 175 LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 + +F + L LS+PFL +V+ +G++ +L+P + IY ++P + G L L++ Sbjct: 206 TERSFALGLELSAPFLILSLVWQGMLGIMTRLLPTLQIYNAASPLQLLGGIALLGLTLST 265 Query: 235 IVYQFSHS 242 +V + Sbjct: 266 MVTIWQGQ 273 >gi|218515804|ref|ZP_03512644.1| flagellar biosynthesis protein FliR [Rhizobium etli 8C-3] Length = 161 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 70/123 (56%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI L+P LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIALMPLLWDTVYP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + + Sbjct: 61 AVHTGAGTYIGLIFSESLVGLMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDAP 120 Query: 121 ETP 123 E Sbjct: 121 ENQ 123 >gi|38639344|gb|AAR25810.1| BcscT [Burkholderia multivorans E243] Length = 269 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L ++ R+ + ++P + + VR A+ + + P + + Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQ--VASLPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + L +Q G +I G P + Sbjct: 71 VTWCVLVAKEAVVGMLLAGAFSAVLLAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++ Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVV 241 >gi|225849159|ref|YP_002729323.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium azorense Az-Fu1] gi|225644067|gb|ACN99117.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium azorense Az-Fu1] Length = 257 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 110/238 (46%), Gaps = 2/238 (0%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M + ++L L+ R+ + P +S + IP V++ ++F+ + + + Sbjct: 1 MVLITPDQAIALALVFSRIIAFFSTFPLISSTVIPHNVKVLLVVSFAFFTMLNFDIQVKV 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 N + + L++ E+F+G GL++ + + G ++ +GL + + Sbjct: 61 -NQIELITFLILIVKEIFIGLSLGLIVNILISAFSYAGEIVGFLMGLTVMNMYNPAFG-Q 118 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L+ + L +V + + +L KS+ +P+ + IF + F+ Sbjct: 119 TSVLSGFFVFLFYLLFFVSGSYQILIGSLFKSFEILPLTEASINQGIFPYLIEKSGDIFL 178 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 + +++ PF+ +VFN+ + L+N+L+PQI ++FI P I +G + L S ++V Sbjct: 179 LSFQMAFPFILVLLVFNVVLALINRLIPQINVFFIGLPAQIWIGFIVLMFSSILLVKV 236 >gi|221200563|ref|ZP_03573605.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD2M] gi|221209220|ref|ZP_03582211.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD2] gi|221170910|gb|EEE03366.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD2] gi|221179904|gb|EEE12309.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia multivorans CGD2M] Length = 270 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 82/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L ++ R+ + ++P + + VR A+ + + P + + Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQ--VASLPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 VTWCVLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEAGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++ Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVV 241 >gi|315654596|ref|ZP_07907502.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC 51333] gi|315491060|gb|EFU80679.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC 51333] Length = 248 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 83/229 (36%), Gaps = 6/229 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L R + P + I +V+ A + + Sbjct: 6 ALFTAFALASVRATVFLAFCPPFNNRAISGRVKAMLGAALGFACMGRIGPV------DRS 59 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++++ +G +++R+ LQ GS+I G + + + Sbjct: 60 DVFLFELLIQALIGFAMAVMVRIIVATLQMAGSLIDFEGGFAMAQAFDPLTMTNQATFGR 119 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + + L+ + + + L +S+ +PIG + GN V + + ++ Sbjct: 120 VYELSAMAMLFATNGYQLLILGLARSFNAMPIGAAFDMGNYADRLVFRFGELMVASIEIA 179 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P L + ++ +GLL K+ P + + + P I + + L + +I Sbjct: 180 GPLLLVLFLTDMGLGLLTKVAPAMNAFTLGFPLKIMMTAFTAPLIMVVI 228 >gi|167572949|ref|ZP_02365823.1| type III secretion system EscT protein [Burkholderia oklahomensis C6786] Length = 260 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 3/226 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + + R +M++P + + VR + ++ +LP Sbjct: 7 WLPIVAIAMLRPFGALMIVPVFTPGTLGGSLVRNALVLMIALPVLPVHDAWPAFSPAAGG 66 Query: 67 AY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A Y L + EL +G + G + L G +I TA G ++ + + +P Sbjct: 67 APHYLWLALGELCVGALIGFCAAIPFWALDMAGFLIDTARGASMASVLNPLLGAQSSPFG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLR 184 + + L V + + + SY T+P G L FG + + + + LR Sbjct: 127 MVFSQVFTLLFLVSGGFNTLIETIYASYVTLPPGAPLRFGPDALALLTQQWHLMYELCLR 186 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + P L ++ ++++GL+N+ Q+ ++F+S P L L + Sbjct: 187 FAMPALAAILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLLLVM 232 >gi|304311651|ref|YP_003811249.1| Type III secretory pathway protein [gamma proteobacterium HdN1] gi|301797384|emb|CBL45604.1| Type III secretory pathway protein [gamma proteobacterium HdN1] Length = 263 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 3/228 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ L + R+G+ ++LP S +P VR +A +I +LP + + + Sbjct: 14 FIAIALSLPRLGAAFLILPLFQQSTVPATVRNSLIVALAISVLPAAISSTKAADLM-LLD 72 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + +V+ E +G V G L L GS+I G ++ + + + L Sbjct: 73 WPIIVLKECLIGAVIGFLFGSVFWALGVAGSMIDMQSGGSMASIVDPIQGHQTALIGQLF 132 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRLS 186 L ++ SY PI L +I F+ L L+ Sbjct: 133 SRFASWLLMASGGFLVFMELVLSSYRIWPIADALPQLSIESSDLFIAEFGYILKTGLILA 192 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 P + + + GL+N+ + ++ IS+ G L + + Sbjct: 193 GPAIVVLMAIDAGFGLMNRFAQNLNLFSISSSVKYFAGIGVTFLVLTL 240 >gi|325109029|ref|YP_004270097.1| type III secretion system inner membrane R protein [Planctomyces brasiliensis DSM 5305] gi|324969297|gb|ADY60075.1| type III secretion system inner membrane R protein [Planctomyces brasiliensis DSM 5305] Length = 330 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 102/286 (35%), Gaps = 51/286 (17%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-------- 60 M L++ R+ +++ P S IP+Q+R+ A ++++ P L + D Sbjct: 29 FMVFLLVLVRLSGLMVIGPFFGHSSIPVQMRMLLAFTLALIVAPALPNVHDRGFQALDQN 88 Query: 61 ----------------------------------------QNFVNRAYYSKLVMVELFLG 80 +V EL +G Sbjct: 89 QDGQLTGAEIPRGVRESLLQDPVAQPEQLAVSRAEFSRMHAVPSTALDLLWVVGTELLIG 148 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI- 139 + G + V GLQ G G L + + +P L+ ++G AL V+ Sbjct: 149 MLLGFGVLVVLSGLQLAGETFDQQAGTALNEVFNPALGTSSSPTGQLLFLLGTTALLVMP 208 Query: 140 --DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 D H + L++++ IP+G + +++ + +I +++++P L + + Sbjct: 209 PFDGHLMMLMNLLQTFEVIPVGLAWVDMSTLDVLRHLISQSLVIAIQIAAPLLAAMALLS 268 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +++G L VPQI + + P L L +++ F Sbjct: 269 VAMGFLGYTVPQINVLVLGFPIRAMLSLAILVVTMSGATEAVLDLF 314 >gi|333003046|gb|EGK22600.1| flagellar biosynthetic protein FliR [Shigella flexneri VA-6] Length = 234 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 30/240 (12%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + F + RV + I P LS +P +V+L AM + + P L V Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L + ++ +G G ++ ++ G +I +GL+ T Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFAT---------------- 112 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + H + LV ++ T+PIG E N F + F+ L L+ Sbjct: 113 -----------FNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLAL 161 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F Sbjct: 162 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 221 >gi|298346008|ref|YP_003718695.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC 43063] gi|304390234|ref|ZP_07372188.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657499|ref|ZP_07910381.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236069|gb|ADI67201.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC 43063] gi|304326716|gb|EFL93960.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491971|gb|EFU81580.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 248 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 83/229 (36%), Gaps = 6/229 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L R + P + I +++ A + + Sbjct: 6 ALFTAFALASVRATVFLAFCPPFNNRAISGRIKAMLGAALGFACMGRIGPV------DRS 59 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++++ +G +++R+ LQ GS+I G + + + Sbjct: 60 DVFLFELLIQALIGFAMAVMVRIIVATLQMAGSLIDFEGGFAMAQAFDPLTMTNQATFGR 119 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + + L+ + + + L +S+ +PIG + GN V + + ++ Sbjct: 120 VYELSAMAMLFATNGYQLLILGLARSFNAMPIGAAFDMGNYADRLVFRFGELMVASIEIA 179 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P L + ++ +GLL K+ P + + + P I + + L + +I Sbjct: 180 GPLLLVLFLTDMGLGLLTKVAPAMNAFTLGFPLKIMMTAFTAPLIMVVI 228 >gi|225619292|ref|YP_002720518.1| flagellar biosynthetic protein fliR [Brachyspira hyodysenteriae WA1] gi|225214111|gb|ACN82845.1| flagellar biosynthetic protein fliR [Brachyspira hyodysenteriae WA1] Length = 253 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 95/236 (40%), Gaps = 8/236 (3%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 + R + +M+ P S + IP +++ A + + P + +++Q Y ++ Sbjct: 1 MVRFVAILMVAPLFSSNVIPNTIKMALAFIATAAIFPLV-ANVNVQAAPTFVEYFLTLVN 59 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E +G + G L+ + Q + +G + ++ + L L ++ +L Sbjct: 60 EALIGILIGFLMSIIFAAYQVMANFFEIQMGFGISETVDPISQVTVPVLGQLQSLVVILL 119 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQEL-------NFGNIFSSFVNMLQTTFMIMLRLSSP 188 ID V L S+ +PI E +F + + + + F + L L+ P Sbjct: 120 FIAIDGPSWVIRTLFYSFKAMPILSEASKAVFTSSFNGVIDRMIYYMSSLFSVALSLALP 179 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + ++S+GLL K PQ+ I + P I +G + I ++V F Sbjct: 180 IMLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIAVGVAAYYILIPVLVSNFMKVLE 235 >gi|262394131|ref|YP_003285985.1| type III secretion protein SpaR [Vibrio sp. Ex25] gi|262337725|gb|ACY51520.1| type III secretion protein SpaR [Vibrio sp. Ex25] Length = 241 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 89/226 (39%), Gaps = 4/226 (1%) Query: 21 SCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +C + LP LS + VR + ++ + P + L + + ++ E+ + Sbjct: 2 ACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-SLPAEADGIWLIVILGKEVLI 60 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G + + ++ G ++ G + + + TP L+ + + Sbjct: 61 GLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTLITLFFSG 120 Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 YAL KSY + PI + F + + + +S+P + + Sbjct: 121 GGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLMSAPLVLAMFLAE 180 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + L+++ PQ+ ++F++ P + S+ L + + +++ F F Sbjct: 181 FGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGLMMDHFEVQF 226 >gi|161520298|ref|YP_001583725.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia multivorans ATCC 17616] gi|189353523|ref|YP_001949150.1| type III secretion protein SctT [Burkholderia multivorans ATCC 17616] gi|160344348|gb|ABX17433.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia multivorans ATCC 17616] gi|189337545|dbj|BAG46614.1| type III secretion protein SctT [Burkholderia multivorans ATCC 17616] Length = 270 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 82/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L ++ R+ + ++P + + VR A+ + + P + + Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQIAS--LPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 VTWCVLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++ Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVV 241 >gi|91224468|ref|ZP_01259730.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] gi|91190810|gb|EAS77077.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] Length = 241 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 89/226 (39%), Gaps = 4/226 (1%) Query: 21 SCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +C + LP LS + VR + ++ + P + L + + ++ E+ + Sbjct: 2 ACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-SLPAETDGIWLIMILGKEVLI 60 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G + + ++ G ++ G + + + TP L+ + + Sbjct: 61 GLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTLITLFFSG 120 Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 YAL KSY + PI + F + + + +S+P + + Sbjct: 121 GGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLMSAPLVLAMFLAE 180 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + L+++ PQ+ ++F++ P + S+ L + + I++ F F Sbjct: 181 FGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGIMMDHFEVQF 226 >gi|134294010|ref|YP_001117746.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia vietnamiensis G4] gi|134137167|gb|ABO58281.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia vietnamiensis G4] Length = 269 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L ++ R+ ++++P + I VR A+ + + P + + Sbjct: 13 GTLRPLLYVMPRLLPIMLIVPVFNEQIITGLVRNGIAVVIAAFVAPAIDPAQ--VASLPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 LMWCLLVAKEAVVGLLLAGAFSAVLFAIQGVGFLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184 + + L + +SY PIG + + V T F M++ Sbjct: 131 FLNFVALALFVTAGGLQVLVQLFAQSYAWWPIGSFGPDLSSMLQTFVVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++ Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVV 241 >gi|294084389|ref|YP_003551147.1| flagellar biosynthetic protein FliR [Candidatus Puniceispirillum marinum IMCC1322] gi|292663962|gb|ADE39063.1| flagellar biosynthetic protein FliR [Candidatus Puniceispirillum marinum IMCC1322] Length = 225 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 87/208 (41%), Gaps = 2/208 (0%) Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94 P+Q+R+ A ++ + + N + ++ E+ +G GL++ ++ G Sbjct: 2 PLQIRIIMAFMLAMSVAIQVEPI--DVNVITSLPGFMIMATEITIGLAAGLVLTIWFAGA 59 Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154 G I++ GL + S ++ ++ + + +D H V +++SY Sbjct: 60 LLAGEKIASTAGLGFAAQVDPSTGGQTPVISQILYLFLTVIFLSLDGHLMVIRIMLESYS 119 Query: 155 TIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214 +P+G + G + + ++ + F + + P + ++ N+SIG++ + PQ+ ++ Sbjct: 120 IMPLGHVPDMGILVEAGISAAGSMFFVGAIIMLPVVIILLMINVSIGVITRSAPQLNLFS 179 Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + L S + S Sbjct: 180 FGFPISMLGVFIVLYFSAGTLSSNMSDL 207 >gi|261419436|ref|YP_003253118.1| flagellar biosynthesis protein FliR [Geobacillus sp. Y412MC61] gi|319766251|ref|YP_004131752.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y412MC52] gi|261375893|gb|ACX78636.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y412MC61] gi|317111117|gb|ADU93609.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y412MC52] Length = 257 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 90/239 (37%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R S +P S +P + A FS +L + Y Sbjct: 10 AFLLVFVRAASFFAAMPLFSYRTVPASYKAGLAFLFSWLLFL----AMPKPVLALDGVYV 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E +G GLL + +Q G +I IG + + L + + Sbjct: 66 LLVVKEALVGLALGLLAAILMAAMQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGEYLHL 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSP 188 + LL L +D HH + + SY +P+ + + + V F ++++P Sbjct: 126 LALLLLLALDGHHLLLDGMFYSYHWLPLDRLPHVADGRAVEYAVRAFAAMFAAAFQMAAP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++++G++ + VPQ+ I+ + L L I I+ F + F Sbjct: 186 LVGSLFLVDVALGIIARAVPQMNIFAVGFSAKTAAAFLLLLAGIGTILLAARSVFHFMF 244 >gi|238796943|ref|ZP_04640447.1| Flagellar biosynthetic protein fliR [Yersinia mollaretii ATCC 43969] gi|238719203|gb|EEQ11015.1| Flagellar biosynthetic protein fliR [Yersinia mollaretii ATCC 43969] Length = 259 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 94/240 (39%), Gaps = 3/240 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I+ F + R+ + P + I + ++ A ++++ L + + Sbjct: 12 IINQFFWPMLRILALFSTAPIFNEKGIGRKTKVGLAAIIALLVGQHLPNNHIEIFSITGL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + +G GL I++ + ++ G +I +GL+ T + + + Sbjct: 72 WVG---AKQFIIGAAMGLTIQLIFVAVRNAGEIIGLQMGLSFATFYDPAAGGNMPVVARI 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ L ++ H + L S+ +PI + F + F L L Sbjct: 129 LNLLVTLLFLTLNGHLWMLSILADSFIALPINSDEFNSEGFIYLPHAAGLIFRFGLMLGL 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 P + + N+++GLLN+L PQ+ I+ + P +G G L + + + F + F Sbjct: 189 PIITLLLCLNLTLGLLNRLTPQLSIFVVGFPLTLGTGMAALSMMMYTLSPFFENMMEEIF 248 >gi|319795602|ref|YP_004157242.1| type III secretion protein spar/ysct/hrct [Variovorax paradoxus EPS] gi|315598065|gb|ADU39131.1| type III secretion protein SpaR/YscT/HrcT [Variovorax paradoxus EPS] Length = 260 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 6/221 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + ++ L + R+ + ++P S + I VR + + + P + Sbjct: 11 EKFVSAVVLTLPRLFAIFSVVPFFSGTMITGIVRSGVLLILAAFMSPLAGEFPGASPMT- 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 Y + E +G + GL ++ +Q G +I G + Sbjct: 70 ---YMLIAGKEALIGLLLGLGFGIFIWAIQSVGDLIDFQTGSANASFFDPVAGHENGATG 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIML 183 +G + + + A++ SY P+G + V T F+ ++ Sbjct: 127 EFLGWVVIALFVSAGGLLAMLGAVIDSYRLWPVGSFFPDAGLVLEQFAVRQGDTLFLWIV 186 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224 +L++P +F ++ + GL+ ++ PQ+ ++ + P L Sbjct: 187 KLAAPIIFVLLLVELGTGLVGRVAPQLNVFVFAQPLKSLLA 227 >gi|269976285|ref|ZP_06183281.1| flagellar biosynthetic protein FliR [Mobiluncus mulieris 28-1] gi|307701592|ref|ZP_07638609.1| putative flagellar biosynthetic protein FliR [Mobiluncus mulieris FB024-16] gi|269935614|gb|EEZ92152.1| flagellar biosynthetic protein FliR [Mobiluncus mulieris 28-1] gi|307613271|gb|EFN92523.1| putative flagellar biosynthetic protein FliR [Mobiluncus mulieris FB024-16] Length = 249 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 83/235 (35%), Gaps = 6/235 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M + + L R ++ P S +++ + + + Sbjct: 1 MITIHLGFLTAFMLASIRATVFLVFCPPFSNRAFSGRIKAMLGAGLGLACMQRIGPV--- 57 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 ++ +++ F+G L++R+ +Q GS++ G + + Sbjct: 58 ---AQTDFFVVECVIQAFIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTN 114 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + + + + L+ + + + L +S+ +P G + N V M Sbjct: 115 QATFGRVYELTAMALLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTM 174 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L ++ P L + ++ +GLL K+ P + + + P I + + F + ++ Sbjct: 175 SALEIAGPLLLVLFLTDMGMGLLTKVAPAMNAFTLGFPLKIMVTAFFAPAIMVVL 229 >gi|115358969|ref|YP_776107.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria AMMD] gi|170702399|ref|ZP_02893288.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria IOP40-10] gi|171322218|ref|ZP_02911065.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] gi|172063761|ref|YP_001811412.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MC40-6] gi|115284257|gb|ABI89773.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria AMMD] gi|170132693|gb|EDT01132.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria IOP40-10] gi|171092455|gb|EDT37800.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] gi|171996278|gb|ACB67196.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MC40-6] Length = 269 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + L ++ R+ + ++P + I VR A+ + + P + + Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIITGLVRNGIAVVIAAFVAPVIDPAQVAA--LPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 LMWCLLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLETFVVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P + ++ + IGL+ + VPQ+ I+ + P L L + L + ++ Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNIFVFAQPVKSALAVLMMVLFLPVV 241 >gi|229127095|ref|ZP_04256092.1| Type III secretion system inner membrane R protein [Bacillus cereus BDRD-Cer4] gi|228656211|gb|EEL12052.1| Type III secretion system inner membrane R protein [Bacillus cereus BDRD-Cer4] Length = 251 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F + SI + D +D+ + Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 60 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L++L Sbjct: 61 AAYAATQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTLFD 120 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + L+ + + ++KS+ +L + S + L + ++ P Sbjct: 121 MFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 181 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 232 >gi|30019813|ref|NP_831444.1| flagellar biosynthesis protein FliR [Bacillus cereus ATCC 14579] gi|206970706|ref|ZP_03231658.1| flagellar biosynthetic protein FliR [Bacillus cereus AH1134] gi|29895358|gb|AAP08645.1| Flagellar biosynthetic protein fliR [Bacillus cereus ATCC 14579] gi|206734342|gb|EDZ51512.1| flagellar biosynthetic protein FliR [Bacillus cereus AH1134] Length = 253 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F + SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L++L Sbjct: 63 AAYAATQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTLFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 MFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|301165898|emb|CBW25471.1| putative flagellar export protein [Bacteriovorax marinus SJ] Length = 259 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 90/234 (38%), Gaps = 1/234 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFV 64 + +++ +L R + LP +P V++ + + P L + + Sbjct: 9 QYSVIAFWLCFTRFVAVSFQLPIFDNGAVPNLVKILATLVMTYAFFPMLEGEILKDVVHY 68 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + L + +G + G +++ G++I+ +G + S S P Sbjct: 69 GVDGFWYLTVFNTVVGLLVGFFVKIIMSIYTAAGALITQQVGFGAVSYFDPSSSQQVGPF 128 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 LI L+ + +F L S+ +I + F ++ + + F+ L Sbjct: 129 EQLIKWTVLIIILSSGALLPMFKGLYSSFFSISALEMGKFAASPEFYLRLFKNMFLSALM 188 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 LSSP +F ++ +G++ + VPQ+ + +S IGLG L + + Sbjct: 189 LSSPMIFTNMLIMTILGIIARTVPQMNVIMVSFAVNIGLGLLVFVATSQEFFRV 242 >gi|329889294|ref|ZP_08267637.1| type III secretion apparatus protein SpaR/YscT/HrcT [Brevundimonas diminuta ATCC 11568] gi|328844595|gb|EGF94159.1| type III secretion apparatus protein SpaR/YscT/HrcT [Brevundimonas diminuta ATCC 11568] Length = 265 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 4/230 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 RV + +L+P LS +P VR + F + +L + + + L E Sbjct: 20 TRVATTFLLMPLLSPQTVPAMVRNSIFLVFGLAVLTMQPQVAQMT--MPTVQWILLFGKE 77 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G V G + G +I T +G + + + +G + Sbjct: 78 ALVGVVIGFFFATMLWAFEAAGQIIDTKVGATMAQVVDPLSGHQTSLNGEFLGRLANFVF 137 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ++ S+ PIG + + S F + + +SP L Sbjct: 138 MFSGGLLLLVGTILDSFVIWPIGSLTPVLTMSSLSLFEGEFTRLMTLAVLFASPVLVVLF 197 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 V + ++GL+N+ PQ+ ++ +S L +L + + + +V + + Sbjct: 198 VTDGALGLVNRYAPQLNVFSLSLSIKAWLATLIILIMMTGLVQTLLNEIM 247 >gi|168704084|ref|ZP_02736361.1| flagellar biosynthesis protein FliR [Gemmata obscuriglobus UQM 2246] Length = 254 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 98/236 (41%), Gaps = 8/236 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-----V 64 ++L L++ R+G+ + ++P + P VR + + + + V Sbjct: 6 VALGLLLARIGAFVAVMPLFAART-PRTVRAGMVVVLAAFYVGPAGAELAAAPPGSVREV 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + Y ++ E +G G ++ L + G ++ IGLN+ +G + + PL Sbjct: 65 DPLRYGLVLAREALIGVAMGFAFGLFLLPGRIAGEFVTQQIGLNISPQLGPAGGESGGPL 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 ++ G L ++D HH V A S+ +PIG + V L + + + L Sbjct: 125 TNVFETAGALVFLLVDGHHIVLMAFHASFAALPIGGSVVPE--AGPMVTGLASAYEMGLL 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L++P + +I++ ++ + PQ+ IY + + + + + + V + Sbjct: 183 LAAPLALCLFLLSITLAVMARAAPQLNIYSVGFSLQVLVALIAGLVLVPEFVTTLT 238 >gi|319790411|ref|YP_004152044.1| flagellar biosynthetic protein FliR [Thermovibrio ammonificans HB-1] gi|317114913|gb|ADU97403.1| flagellar biosynthetic protein FliR [Thermovibrio ammonificans HB-1] Length = 259 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 4/230 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 S + R+ S + P +S +P+ VR+ +AFS + F+ + Sbjct: 12 FWSFLFVFLRLSSLFIAFPFISGLNVPLTVRVVLVLAFSFFVSSFVTVE---PGSLTLFE 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 ++ V+ EL LG L++ ++ F IS +GL + + + + L Sbjct: 69 FALAVLKELLLGLSLALVVYIFYAVFLFAADQISYLMGLTVVNMFDPTFGM-VSVLGRFF 127 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + + ALV+S+ IP G G +F F +++ P Sbjct: 128 VYVFYALFFATGAYRLFIGALVESFKLIPPGGASFKGPLFKFLFQEAGLIFSFGFQMAFP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 FL + N+++ L+N+L+PQI ++ + P + +G + L + ++V Sbjct: 188 FLLVLFITNLALALVNRLIPQINVFIVGLPLQLFVGLVALSVGFSVVVLF 237 >gi|225850261|ref|YP_002730495.1| flagellar biosynthetic protein FliR [Persephonella marina EX-H1] gi|225646347|gb|ACO04533.1| flagellar biosynthetic protein FliR [Persephonella marina EX-H1] Length = 260 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 108/232 (46%), Gaps = 2/232 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV-NR 66 I ++ L++ R+ + P L+ IP VR+ ++ S ++ + + Sbjct: 9 IAITFGLVLSRIIGIFLSFPLLNTGLIPANVRILLVVSLSFYIMKIFGINAGISPENFSV 68 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 Y LV+ EL +G + GLL+ ++ + +IS +G + + + L+ Sbjct: 69 LLYFLLVLKELLMGFLLGLLVNLFISAFSYAAEIISYFMGFTIVNLFDPTFG-QISVLDR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ L ++ + V +L ++ +P+G+ +IF + L F + L+++ Sbjct: 128 FFILLFYLLFFITGAYQIVLGSLFMTFKIMPVGKLYINTDIFPHLLEKLPILFYLALKIA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 PF+ ++ N+++ L+N+L+PQI ++ + P I +G L + +I+Y Sbjct: 188 FPFVLILLIVNVALALINRLIPQINVFIVGLPLQIFVGLASLAIGTSLIIYF 239 >gi|262364749|gb|ACY61306.1| flagellar assembly protein [Yersinia pestis D182038] Length = 232 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 89/218 (40%), Gaps = 2/218 (0%) Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84 P + + ++ A+ +I++ P + + + + L ++ G + G Sbjct: 3 FCPVIRHKAFTRKAKIGTALLLAILITPMISQPV-VSGELLSIENLLLAGEQILWGWLFG 61 Query: 85 LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQ 144 ++ + L+ G ++S +GL + + + ++ +I +L + ++ H Sbjct: 62 SMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQIIFTFSVLIFFTLNGHLL 121 Query: 145 VFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLN 204 L+KS+ + PIG+ +N + S L L+ P F ++ S GLLN Sbjct: 122 FVTILLKSFSSWPIGEAINDFS-LRSLALSLGWILSSATLLALPTTFIMLIVQGSFGLLN 180 Query: 205 KLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ P + ++ + P + G L L L I + H Sbjct: 181 RISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 218 >gi|315186371|gb|EFU20131.1| flagellar biosynthetic protein FliR [Spirochaeta thermophila DSM 6578] Length = 260 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 4/239 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ RV + + + P S S IP R+ A S + P+ + Y+ Sbjct: 12 FLLVFARVFTLLAISPLFSSSGIPGIARVGLAFFTSAAVFPWASSLYTIPE--TGLGYAF 69 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G + G + +Y Q G +G N + + ++ + Sbjct: 70 LLLGEVLVGLITGFFVLLYFSLFQIAGEFFGFQMGFNAASVYDPLSQEELPLMGQVMSNV 129 Query: 132 GLLALWVIDFHH-QVFYALVKSYGTI-PIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L V + S + ++F F++ L F L+ P Sbjct: 130 AVLVFLVTGGFLKFFLSGVYYSIKAFRSADILVYREDLFDVFLHGLAGIFQYAFVLALPL 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + ++ ++S+GLL K PQ+ + + P IG+G + L + + + S F Y F+ Sbjct: 190 ISVLLLVSVSMGLLGKAAPQMNLLLMGFPISIGVGFILLLVVLPFVAEMMSRIFDYMFY 248 >gi|300871795|ref|YP_003786668.1| flagellar biosynthesis protein FliR [Brachyspira pilosicoli 95/1000] gi|300689496|gb|ADK32167.1| flagellar biosynthesis protein, FliR [Brachyspira pilosicoli 95/1000] Length = 253 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 95/232 (40%), Gaps = 8/232 (3%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 + R + +++ P S + IP ++ A + + P + +Q Y ++ Sbjct: 1 MVRFLAILIVAPMFSSNVIPNTIKAGLAFIATATIFPLV-ANTSVQAAPTFLEYFLSLLN 59 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E +G + G L+ + L Q T + +G + ++ + L L ++ +L Sbjct: 60 EALIGLLIGFLMSMIFLAFQVTTNFFEIQMGFGISEAVDPISQITVPVLGQLQALVVILI 119 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQEL-------NFGNIFSSFVNMLQTTFMIMLRLSSP 188 ID + V L S+ +P+ + +F + + + + F I L L+ P Sbjct: 120 FIAIDGQNWVIRTLYNSFKAMPVLSDASKAVFLGSFQGVIDRMIYYMSSMFSIALSLALP 179 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + + ++S+GLL K PQ+ I + P I +G + + I ++ F Sbjct: 180 IMLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIAVGIVAYYILIPALIANFM 231 >gi|227876758|ref|ZP_03994867.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC 35243] gi|306817705|ref|ZP_07451447.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC 35239] gi|227842655|gb|EEJ52855.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC 35243] gi|304649519|gb|EFM46802.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC 35239] Length = 252 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 6/229 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L R ++ P S +++ + + + Sbjct: 10 GFLTAFMLASIRATVFLVFCPPFSNRAFSGRIKAMLGAGLGLACMQRIGPV------AQT 63 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ +++ F+G L++R+ +Q GS++ G + + + Sbjct: 64 DFFVVECVIQAFIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTNQATFGR 123 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + + L+ + + + L +S+ +P G + N V M L ++ Sbjct: 124 VYELTAMALLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTMSALEIA 183 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P L + ++ +GLL K+ P + + + P I + + F + ++ Sbjct: 184 GPLLLVLFLTDMGMGLLTKVAPAMNAFTLGFPLKIMVTAFFAPAIMVVL 232 >gi|307718616|ref|YP_003874148.1| hypothetical protein STHERM_c09280 [Spirochaeta thermophila DSM 6192] gi|306532341|gb|ADN01875.1| hypothetical protein STHERM_c09280 [Spirochaeta thermophila DSM 6192] Length = 260 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 91/239 (38%), Gaps = 4/239 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ RV S + + P S S IP R+ A S + P+ + Y+ Sbjct: 12 FLLVFARVFSLLAISPLFSSSGIPGIARVGLAFFTSAAVFPWASSLYTIPE--TGLGYAF 69 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E+ +G + G + +Y Q G +G N + + ++ + Sbjct: 70 LLLGEVLVGLITGFFVLLYFSLFQIAGEFFGFQMGFNAASVYDPLSQEELPLMGQVMSNV 129 Query: 132 GLLALWVIDFHH-QVFYALVKSYGTI-PIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 +L V + S + + F F++ L F L+ P Sbjct: 130 AVLVFLVTGGFLKFFLSGVYYSIKAFRSADILVYREDFFDVFLHGLAGIFQYAFVLALPL 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + ++ ++S+GLL K PQ+ + + P IG+G + L + + + S F Y F+ Sbjct: 190 ISVLLLVSVSMGLLGKAAPQMNLLLMGFPISIGVGFVLLLVILPFVAEMMSRIFDYMFY 248 >gi|163802011|ref|ZP_02195907.1| translocation protein in type III secretion [Vibrio sp. AND4] gi|159174152|gb|EDP58960.1| translocation protein in type III secretion [Vibrio sp. AND4] Length = 260 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 90/233 (38%), Gaps = 4/233 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L + R+ +C + LP L+ + VR + ++ + P + L + + + Sbjct: 15 LTLPRLMACFIFLPILNKQMLGGTMVRNGVLCSLALFIFPMINQQT-LPEETDGIWLMVI 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ LG + G + + + G ++ G + + + TP L+ Sbjct: 74 LGKEILLGLLIGFVAAIPFWAIDAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTL 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + YAL +SY + P+ F + + + +S+P + Sbjct: 134 ITLFFSGGGFIAFMYALFQSYVSWPVVSFFPTVTEEWVHFFYAQFEQLMWLGVLMSAPLV 193 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + L+++ PQ+ ++ ++ P + SL L + + +++ F F Sbjct: 194 LAMFLAEFGLALISRFAPQLNVFSLAMPIKSAVASLLLIVYLALMINHFEALF 246 >gi|116626500|ref|YP_828656.1| type III secretion system inner membrane R protein [Candidatus Solibacter usitatus Ellin6076] gi|116229662|gb|ABJ88371.1| type III secretion system inner membrane R protein [Candidatus Solibacter usitatus Ellin6076] Length = 257 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 2/225 (0%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + L++ RVG ++ +P P VR A+ F++ L Q V Sbjct: 10 GTLYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAVDAAQ--VGP 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + ++ E LG G+ + + L V+ G +++ + L Sbjct: 68 ATLAGWLLSEAALGLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEADSGILLV 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 ++ + + + ++ +S IP G + + + F + +RL+ Sbjct: 128 FAQLMSGMLFFAMGLDREILRLFAQSLDRIPAGVYIFSRASAEPLIRLGAILFSVGVRLA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231 P + ++ ++++ LL +L Q+ + ++ P + + L + Sbjct: 188 LPVVALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWA 232 >gi|229138468|ref|ZP_04267057.1| Type III secretion system inner membrane R protein [Bacillus cereus BDRD-ST26] gi|228645005|gb|EEL01248.1| Type III secretion system inner membrane R protein [Bacillus cereus BDRD-ST26] Length = 251 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTTWDV 60 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 61 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 120 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 121 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 181 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 232 >gi|315636294|ref|ZP_07891544.1| flagellar biosynthetic protein FliR [Arcobacter butzleri JV22] gi|315479383|gb|EFU70066.1| flagellar biosynthetic protein FliR [Arcobacter butzleri JV22] Length = 249 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 103/243 (42%), Gaps = 5/243 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + L++ R+ + ++ +P + I + VR+ FA SI + PF+ D+ +N Sbjct: 10 EQTVYQFLLLLARILAFVVFMPVFGHTAINVTVRIAFAFYLSIFIYPFV----DIVTSIN 65 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + ++ E+ LG V +L+ + ++ G + + L++ + + E + Sbjct: 66 QNNFIISLISEITLGLVAAMLVNIIFSAVRIIGEFVEYSTALSMAMMFDPTTNSQEGLVA 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLR 184 L+ I L+ + + L KS+ I +G F + ++ ++ F Sbjct: 126 KLLFWISLMLFFQTGMYEMTLVILAKSFTMIHLGSFNIFSYDGIQLAIDEIKRMFSFAFA 185 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + P F + ++ G K +P + I+ L +FL L +EI F++ F+ Sbjct: 186 FALPLFFIGFIMDVYYGYGTKSMPAFSPFIITFQLKFALIFVFLILGMEIFADTFTNYFI 245 Query: 245 YGF 247 F Sbjct: 246 NKF 248 >gi|167005766|ref|ZP_02271524.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 81-176] Length = 205 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 85/194 (43%) Query: 54 LWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM 113 L+ L++ +++ ++ E+ G + GL++++ + G I+ +G + + + Sbjct: 3 LYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASIL 62 Query: 114 GISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN 173 S + + ++ ++ L+ D HH + L S G I +G N+ Sbjct: 63 DPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNM 122 Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 + F+I +S P L ++ ++ GLL K +PQ + I P I LG + L + Sbjct: 123 GMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILL 182 Query: 234 IIVYQFSHSFLYGF 247 +++ F + L F Sbjct: 183 VMMQYFKNLILELF 196 >gi|47565437|ref|ZP_00236478.1| flagellar biosynthetic protein fliR, putative [Bacillus cereus G9241] gi|52143693|ref|YP_083138.1| flagellar biosynthesis protein FliR [Bacillus cereus E33L] gi|217959251|ref|YP_002337799.1| flagellar biosynthesis protein FliR [Bacillus cereus AH187] gi|222095391|ref|YP_002529451.1| flagellar biosynthesis protein flir [Bacillus cereus Q1] gi|228914346|ref|ZP_04077961.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228945371|ref|ZP_04107726.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|47557427|gb|EAL15754.1| flagellar biosynthetic protein fliR, putative [Bacillus cereus G9241] gi|51977162|gb|AAU18712.1| flagellar biosynthetic protein [Bacillus cereus E33L] gi|217063038|gb|ACJ77288.1| flagellar biosynthetic protein FliR [Bacillus cereus AH187] gi|221239449|gb|ACM12159.1| flagellar biosynthetic protein [Bacillus cereus Q1] gi|228814343|gb|EEM60609.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845340|gb|EEM90376.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 253 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTTWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|32490797|ref|NP_871051.1| hypothetical protein WGLp048 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166003|dbj|BAC24194.1| fliR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 258 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 4/236 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + RV + P + IP ++++ ++ FS ++ L + Y + Sbjct: 19 IWAIARVNGLFISAPVFNEKVIPRKIKILISVLFSFLVSQELPLNNISIISIEGFYVLII 78 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ F GL++++ ++F+G +I +GL+ ++ +I Sbjct: 79 QIIIGF---FIGLILQLSFCSIKFSGELIGLQMGLSFAVFFDHISGPNSPIISRFFNLIL 135 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPFLF 191 +L D H V L S+ IPIG F + IF S +N F L LS P + Sbjct: 136 ILIFLSFDAHLTVLDILFNSFKLIPIGINFKFNDEIFFSIINFSGIIFANGLFLSIPSIT 195 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + NI G+LN+ PQ I+ I + +G L + + + + F Sbjct: 196 MLLSLNILFGILNRFTPQFSIFVIGFSLTLLIGLLSIYIILNNFQKLSTDLIFNTF 251 >gi|56419771|ref|YP_147089.1| flagellar biosynthesis protein FliR [Geobacillus kaustophilus HTA426] gi|56379613|dbj|BAD75521.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426] Length = 257 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 6/239 (2%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L+ R S +P S +P ++ A S +L + Y Sbjct: 10 AFLLVFVRAASFFAAMPLFSYRTVPASYKVGLAFLSSWLLFL----AMPKPVLALDGVYV 65 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E +G GLL + +Q G +I IG + + L + + Sbjct: 66 LLVVKEALVGLALGLLAAILMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGEYLHL 125 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSP 188 + LL L ++D HH + + SY +P+ + + + V + F +++++P Sbjct: 126 LALLLLLMLDGHHLLLDGMFYSYHWLPLDRLPHIADGPAVEYVVRVFAAMFAAAVQMAAP 185 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++++G++ + VPQ+ I+ + L L ++ I+ F + F Sbjct: 186 LVGSLFLVDVALGIIARAVPQMNIFAVGFSAKTAAAFLLLLAAVGGILLAARGVFHFMF 244 >gi|157738151|ref|YP_001490835.1| flagellar biosynthetic protein FliR [Arcobacter butzleri RM4018] gi|157700005|gb|ABV68165.1| flagellar biosynthetic protein FliR [Arcobacter butzleri RM4018] Length = 249 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 103/243 (42%), Gaps = 5/243 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + L++ R+ + ++ +P + I + VR+ FA SI + PF+ D+ +N Sbjct: 10 EQTVYQFLLLLARILAFVVFMPVFGHTAINVTVRIAFAFYLSIFIYPFV----DIVTSIN 65 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + ++ E+ LG V +L+ + ++ G + + L++ + + E + Sbjct: 66 QNNFIISLISEITLGLVAAMLVNIIFSAVRIIGEFVEYSTALSMAMMFDPTTNSQEGLVA 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLR 184 L+ I L+ + + L KS+ I +G F + ++ ++ F Sbjct: 126 KLLFWISLMLFFQTGMYEMTLVILAKSFTMIHLGSFNIFSYDGIQLAIDEIKRMFSFAFA 185 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + P F + ++ G K +P + I+ L +FL L +EI F++ F+ Sbjct: 186 FALPLFFIGFIMDVYYGYGTKSMPAFSPFIITFQLKFALIFIFLILGMEIFADTFTNYFI 245 Query: 245 YGF 247 F Sbjct: 246 NKF 248 >gi|325527470|gb|EGD04804.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp. TJI49] Length = 269 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 82/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ L ++ R+ + ++P + + VR A+ + + P + + Sbjct: 13 GMLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGIAVVIAAFVAPAIDAAQVAA--LPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 LMWCVLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P ++ + IGL+ + VPQ+ I+ + P L L + L + ++ Sbjct: 191 LAAPVTIVLVLVELGIGLVGRAVPQLNIFVFAQPVKSALAVLMMALFLPVV 241 >gi|118477200|ref|YP_894351.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis str. Al Hakam] gi|225863626|ref|YP_002749004.1| flagellar biosynthetic protein FliR [Bacillus cereus 03BB102] gi|229183960|ref|ZP_04311175.1| Type III secretion system inner membrane R protein [Bacillus cereus BGSC 6E1] gi|118416425|gb|ABK84844.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al Hakam] gi|225790476|gb|ACO30693.1| flagellar biosynthetic protein FliR [Bacillus cereus 03BB102] gi|228599485|gb|EEK57090.1| Type III secretion system inner membrane R protein [Bacillus cereus BGSC 6E1] Length = 253 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTTWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKN 234 >gi|320175461|gb|EFW50560.1| Flagellar biosynthesis protein FliR [Shigella dysenteriae CDC 74-1112] Length = 233 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 90/209 (43%) Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98 ++ A+A ++L V + L + ++ +G G ++ ++ G Sbjct: 15 KVALALAAPLLLFVIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAMRTAG 74 Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158 +I +GL+ T + + L L ++ ++ LL + H + LV ++ T+PI Sbjct: 75 EIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPI 134 Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 G E N F + F+ L L+ P + + N+++GLLN++ PQ+ I+ I P Sbjct: 135 GGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFP 194 Query: 219 YLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + +G + + +I H F F Sbjct: 195 LTLTVGISLMAALMPLIAPFCEHLFSEMF 223 >gi|170737796|ref|YP_001779056.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia MC0-3] gi|254250202|ref|ZP_04943522.1| Type III secretory pathway, component EscT [Burkholderia cenocepacia PC184] gi|124876703|gb|EAY66693.1| Type III secretory pathway, component EscT [Burkholderia cenocepacia PC184] gi|169819984|gb|ACA94566.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia MC0-3] Length = 269 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 82/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ L ++ R+ + ++P + I VR A+ + + P + + Sbjct: 13 GMLRPLLYVMPRLLPIMFVVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAA--LPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 LMWCLLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P ++ + IGL+ + VPQ+ I+ S P L L + L + ++ Sbjct: 191 LAAPVTIVLVLVELGIGLVGRAVPQLNIFVFSQPLKSALAVLMMILFLPVV 241 >gi|229058417|ref|ZP_04196801.1| Type III secretion system inner membrane R protein [Bacillus cereus AH603] gi|228719926|gb|EEL71516.1| Type III secretion system inner membrane R protein [Bacillus cereus AH603] Length = 253 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 96/232 (41%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP+ ++ F +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPVMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|42780861|ref|NP_978108.1| flagellar biosynthesis protein FliR [Bacillus cereus ATCC 10987] gi|229029448|ref|ZP_04185531.1| Type III secretion system inner membrane R protein [Bacillus cereus AH1271] gi|229155339|ref|ZP_04283449.1| Type III secretion system inner membrane R protein [Bacillus cereus ATCC 4342] gi|229172414|ref|ZP_04299973.1| Type III secretion system inner membrane R protein [Bacillus cereus MM3] gi|301053306|ref|YP_003791517.1| flagellar biosynthesis protein [Bacillus anthracis CI] gi|42736781|gb|AAS40716.1| flagellar biosynthetic protein FliR [Bacillus cereus ATCC 10987] gi|228610885|gb|EEK68148.1| Type III secretion system inner membrane R protein [Bacillus cereus MM3] gi|228628054|gb|EEK84771.1| Type III secretion system inner membrane R protein [Bacillus cereus ATCC 4342] gi|228731907|gb|EEL82806.1| Type III secretion system inner membrane R protein [Bacillus cereus AH1271] gi|300375475|gb|ADK04379.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis str. CI] Length = 253 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTTWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|65319049|ref|ZP_00392008.1| COG1684: Flagellar biosynthesis pathway, component FliR [Bacillus anthracis str. A2012] gi|229195980|ref|ZP_04322733.1| Type III secretion system inner membrane R protein [Bacillus cereus m1293] gi|228587539|gb|EEK45604.1| Type III secretion system inner membrane R protein [Bacillus cereus m1293] Length = 251 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 60 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 61 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 120 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 121 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 181 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 232 >gi|30261772|ref|NP_844149.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. Ames] gi|47527005|ref|YP_018354.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. 'Ames Ancestor'] gi|49184606|ref|YP_027858.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. Sterne] gi|163939578|ref|YP_001644462.1| flagellar biosynthesis protein FliR [Bacillus weihenstephanensis KBAB4] gi|165869561|ref|ZP_02214220.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0488] gi|167633414|ref|ZP_02391739.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0442] gi|170706403|ref|ZP_02896863.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0389] gi|190566285|ref|ZP_03019203.1| flagellar biosynthetic protein FliR [Bacillus anthracis Tsiankovskii-I] gi|196033556|ref|ZP_03100968.1| flagellar biosynthetic protein FliR [Bacillus cereus W] gi|206974879|ref|ZP_03235794.1| flagellar biosynthetic protein FliR [Bacillus cereus H3081.97] gi|227815459|ref|YP_002815468.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. CDC 684] gi|229011061|ref|ZP_04168255.1| Type III secretion system inner membrane R protein [Bacillus mycoides DSM 2048] gi|229132596|ref|ZP_04261444.1| Type III secretion system inner membrane R protein [Bacillus cereus BDRD-ST196] gi|229166623|ref|ZP_04294375.1| Type III secretion system inner membrane R protein [Bacillus cereus AH621] gi|229602393|ref|YP_002866161.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0248] gi|254683270|ref|ZP_05147131.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. CNEVA-9066] gi|254723853|ref|ZP_05185639.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. A1055] gi|254741032|ref|ZP_05198720.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. Kruger B] gi|254755275|ref|ZP_05207309.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. Vollum] gi|254759811|ref|ZP_05211835.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. Australia 94] gi|30256000|gb|AAP25635.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. Ames] gi|47502153|gb|AAT30829.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. 'Ames Ancestor'] gi|49178533|gb|AAT53909.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. Sterne] gi|163861775|gb|ABY42834.1| type III secretion system inner membrane R protein [Bacillus weihenstephanensis KBAB4] gi|164715001|gb|EDR20519.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0488] gi|167531452|gb|EDR94130.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0442] gi|170128501|gb|EDS97368.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0389] gi|190562420|gb|EDV16387.1| flagellar biosynthetic protein FliR [Bacillus anthracis Tsiankovskii-I] gi|195993990|gb|EDX57946.1| flagellar biosynthetic protein FliR [Bacillus cereus W] gi|206746898|gb|EDZ58290.1| flagellar biosynthetic protein FliR [Bacillus cereus H3081.97] gi|227005684|gb|ACP15427.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. CDC 684] gi|228616877|gb|EEK73950.1| Type III secretion system inner membrane R protein [Bacillus cereus AH621] gi|228650828|gb|EEL06815.1| Type III secretion system inner membrane R protein [Bacillus cereus BDRD-ST196] gi|228750233|gb|EEM00065.1| Type III secretion system inner membrane R protein [Bacillus mycoides DSM 2048] gi|229266801|gb|ACQ48438.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0248] gi|324325786|gb|ADY21046.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis serovar finitimus YBT-020] Length = 253 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|107025877|ref|YP_623388.1| Type III secretion protein SpaR/YscT [Burkholderia cenocepacia AU 1054] gi|116692939|ref|YP_838472.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia HI2424] gi|105895251|gb|ABF78415.1| Type III secretion protein SpaR/YscT [Burkholderia cenocepacia AU 1054] gi|116650939|gb|ABK11579.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia HI2424] Length = 269 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ L ++ R+ + ++P + I VR A+ + + P + + Sbjct: 13 GMLRPLLYVMPRLLPIMFVVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAA--LPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 LMWCLLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P ++ + +GL+ + VPQ+ I+ S P L L + L + ++ Sbjct: 191 LAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAVLMMILFLPVV 241 >gi|196045099|ref|ZP_03112332.1| flagellar biosynthetic protein FliR [Bacillus cereus 03BB108] gi|196024101|gb|EDX62775.1| flagellar biosynthetic protein FliR [Bacillus cereus 03BB108] Length = 253 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 TAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|332294883|ref|YP_004436806.1| flagellar biosynthetic protein FliR [Thermodesulfobium narugense DSM 14796] gi|332177986|gb|AEE13675.1| flagellar biosynthetic protein FliR [Thermodesulfobium narugense DSM 14796] Length = 256 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 103/238 (43%), Gaps = 4/238 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ + + R + P S IP +V++ + FS+++ + T+ N Sbjct: 10 MLIRSLMPILRFSGFFAVAPFFSTQVIPARVKILIILIFSLLITMNMKITVP----DNPI 65 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + E+ +G G + ++ L+F G G+ + + + Sbjct: 66 TFVFSSIFEVLIGVFMGFIFYLFLWILEFAGGFFDMQSGMGMAAFYDPQMGSETSVYGNF 125 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++GLL + +FH+ + V+SY +P+GQ + G ++ ++ L T L ++ Sbjct: 126 FTLLGLLIFLIGNFHYILLKIFVESYYVLPVGQFIKSGPSYNLLMSTLIWTMTAGLEMAL 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 P + + ++S+G++ + PQ+ + + P I + S+ + + + V + F Y Sbjct: 186 PVVLILFLIDLSLGIMARTAPQLNVLLLGLPLKILITSVVIIIFLGFAVPFINQCFNY 243 >gi|228984853|ref|ZP_04145023.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774803|gb|EEM23199.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 253 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDISHIKTTWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|206563887|ref|YP_002234650.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092676|gb|AAL59405.1| BcscT [Burkholderia cenocepacia] gi|28394257|gb|AAO31732.1| BcscT [Burkholderia cenocepacia] gi|198039927|emb|CAR55905.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 269 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 4/231 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 ++ L ++ R+ ++++P + I VR A+ + + P + + Sbjct: 13 GMLRPLLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAA--LPF 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + LV E +G + +Q G +I G P + Sbjct: 71 LMWCLLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + +SY PIG + + V T F M++ Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVK 190 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 L++P ++ + +GL+ + VPQ+ I+ S P L L + L + ++ Sbjct: 191 LAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVV 241 >gi|228926804|ref|ZP_04089872.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832917|gb|EEM78486.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 251 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 60 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 61 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 120 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 121 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F + Sbjct: 181 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKN 232 >gi|196039002|ref|ZP_03106309.1| flagellar biosynthetic protein FliR [Bacillus cereus NVH0597-99] gi|229090731|ref|ZP_04221964.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock3-42] gi|196030147|gb|EDX68747.1| flagellar biosynthetic protein FliR [Bacillus cereus NVH0597-99] gi|228692673|gb|EEL46399.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock3-42] Length = 253 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTTWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKN 234 >gi|317407763|gb|EFV87690.1| type III secretion apparatus protein SpaR/YscT/HrcT [Achromobacter xylosoxidans C54] Length = 266 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 88/221 (39%), Gaps = 3/221 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ M+LP + +P +R A A +VL+P L +V E Sbjct: 23 RILGLCMMLPLFNRGLLPGLLRYGVAAAMGLVLVPALAVDY-ASWSGGIGQTLLIVAKEA 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 F+G G ++ + + G VI G +L +++ +P+ L ++ Sbjct: 82 FVGMTMGFIVALPFWIFEAAGFVIDNQRGASLGSTLNPGTGNESSPMGILFNQAFMVFFM 141 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + + +V S+ I + +++L T + L ++P + + Sbjct: 142 ISGGWFLLTTLIVNSFQVWSIWAWWPALSPSSAPMMLDLLDTLMRMTLLYAAPAVVAMFL 201 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + + L+++ PQ+ ++F++ P L L L L ++++ Sbjct: 202 AEVGLALVSRFAPQLQVFFLAMPIKSALALLVLILYMKVLF 242 >gi|49480931|ref|YP_035887.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218902882|ref|YP_002450716.1| flagellar biosynthetic protein FliR [Bacillus cereus AH820] gi|228933052|ref|ZP_04095915.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229121320|ref|ZP_04250551.1| Type III secretion system inner membrane R protein [Bacillus cereus 95/8201] gi|49332487|gb|AAT63133.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218539407|gb|ACK91805.1| flagellar biosynthetic protein FliR [Bacillus cereus AH820] gi|228662165|gb|EEL17774.1| Type III secretion system inner membrane R protein [Bacillus cereus 95/8201] gi|228826653|gb|EEM72424.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 253 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 95/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKN 234 >gi|22124446|ref|NP_667869.1| type III secretion system component [Yersinia pestis KIM 10] gi|45440282|ref|NP_991821.1| putative type III secretion apparatus protein [Yersinia pestis biovar Microtus str. 91001] gi|51594684|ref|YP_068875.1| type III secretion apparatus protein EscT/SsaT/YscT [Yersinia pseudotuberculosis IP 32953] gi|108810000|ref|YP_653916.1| putative type III secretion apparatus protein [Yersinia pestis Antiqua] gi|108813555|ref|YP_649322.1| type III secretion apparatus protein [Yersinia pestis Nepal516] gi|145600945|ref|YP_001165021.1| type III secretion apparatus protein [Yersinia pestis Pestoides F] gi|150260679|ref|ZP_01917407.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|153948893|ref|YP_001402766.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis IP 31758] gi|162419337|ref|YP_001608226.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis Angola] gi|165926709|ref|ZP_02222541.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. F1991016] gi|165936527|ref|ZP_02225095.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. IP275] gi|166010567|ref|ZP_02231465.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. E1979001] gi|166213916|ref|ZP_02239951.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. B42003004] gi|167402194|ref|ZP_02307667.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418924|ref|ZP_02310677.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426142|ref|ZP_02317895.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186893687|ref|YP_001870799.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis PB1/+] gi|218927479|ref|YP_002345354.1| putative type III secretion apparatus protein [Yersinia pestis CO92] gi|229836527|ref|ZP_04456693.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|229840135|ref|ZP_04460294.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842216|ref|ZP_04462371.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904045|ref|ZP_04519158.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|270488970|ref|ZP_06206044.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis KIM D27] gi|294502344|ref|YP_003566406.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] gi|21957233|gb|AAM84120.1|AE013654_9 putative type III secretion system component [Yersinia pestis KIM 10] gi|45435138|gb|AAS60698.1| putative type III secretion apparatus protein [Yersinia pestis biovar Microtus str. 91001] gi|51587966|emb|CAH19569.1| putative type III secretion apparatus protein EscT/SsaT/YscT [Yersinia pseudotuberculosis IP 32953] gi|108777203|gb|ABG19722.1| type III secretion apparatus protein [Yersinia pestis Nepal516] gi|108781913|gb|ABG15971.1| putative type III secretion apparatus protein [Yersinia pestis Antiqua] gi|115346090|emb|CAL18958.1| putative type III secretion apparatus protein [Yersinia pestis CO92] gi|145212641|gb|ABP42048.1| type III secretion apparatus protein [Yersinia pestis Pestoides F] gi|149290087|gb|EDM40164.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|152960388|gb|ABS47849.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis IP 31758] gi|162352152|gb|ABX86100.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis Angola] gi|165915643|gb|EDR34252.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. IP275] gi|165921332|gb|EDR38556.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. F1991016] gi|165990657|gb|EDR42958.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. E1979001] gi|166204891|gb|EDR49371.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. B42003004] gi|166962918|gb|EDR58939.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048375|gb|EDR59783.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054853|gb|EDR64655.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186696713|gb|ACC87342.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis PB1/+] gi|229679815|gb|EEO75918.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|229690526|gb|EEO82580.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696501|gb|EEO86548.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706211|gb|EEO92219.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|262364374|gb|ACY60931.1| putative type III secretion apparatus protein [Yersinia pestis D182038] gi|270337474|gb|EFA48251.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis KIM D27] gi|294352803|gb|ADE63144.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] Length = 264 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 99/233 (42%), Gaps = 3/233 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L + R +++LP + + +R +A ++ + P + N + Sbjct: 8 LTALALAMMRPYGILLILPLFTARSLGSSLLRNGLIVAIALPVTPLFLSAPIITN-SSPV 66 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ EL +G V G + + + G +I T G + T + + L Sbjct: 67 TWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVL 126 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLS 186 I + + +QV AL SY ++PIGQ + F+ Q F + L + Sbjct: 127 FTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGIQPAADLLLFLQTEWQMMFELCLCFA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 P L ++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ + Sbjct: 187 LPALLVMVLADLSLGLINRSARQLNVFFLAMPIKSALALFLLLISLPYGLHHY 239 >gi|182412231|ref|YP_001817297.1| type III secretion system inner membrane R protein [Opitutus terrae PB90-1] gi|177839445|gb|ACB73697.1| type III secretion system inner membrane R protein [Opitutus terrae PB90-1] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 99/239 (41%), Gaps = 4/239 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ ++ R I+ LP ++ IP+ RL + + +L + + Sbjct: 4 GFLVTWMMVFLRTLGVILQLPLVAGRPIPVMARLGICVCIASLLAGVV---PESSVPATL 60 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 E+ +G G ++R+ ++ G ++S+ IG+ + MG+ + E P+ + Sbjct: 61 WGLLAATAGEILVGLALGFMVRLAFAAVEMAGRILSSEIGITMGGGMGVPEPATE-PMTA 119 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 LI ++ + H + L +S+ P GQ + + +N + +R++ Sbjct: 120 LISTFAVVLFFAFGGHLMMLSGLARSFVLAPAGQPMLAPSASDLLINATSHLIEVGVRIA 179 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 +PF+ + ++ +L +++P++ ++ +S + G L +I F Sbjct: 180 APFIAMNFLVLLTFSVLGRVLPKMNVFIVSFSMRLIAGFTLLASGGTLIARYLYLEFDD 238 >gi|229078950|ref|ZP_04211502.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock4-2] gi|229144381|ref|ZP_04272786.1| Type III secretion system inner membrane R protein [Bacillus cereus BDRD-ST24] gi|229178176|ref|ZP_04305547.1| Type III secretion system inner membrane R protein [Bacillus cereus 172560W] gi|229189866|ref|ZP_04316876.1| Type III secretion system inner membrane R protein [Bacillus cereus ATCC 10876] gi|228593540|gb|EEK51349.1| Type III secretion system inner membrane R protein [Bacillus cereus ATCC 10876] gi|228605306|gb|EEK62756.1| Type III secretion system inner membrane R protein [Bacillus cereus 172560W] gi|228639012|gb|EEK95437.1| Type III secretion system inner membrane R protein [Bacillus cereus BDRD-ST24] gi|228704364|gb|EEL56798.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock4-2] Length = 251 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ +A SI + D +D+ + Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTVWDV 60 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 61 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 120 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 121 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 181 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 232 >gi|228938881|ref|ZP_04101481.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971762|ref|ZP_04132383.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978371|ref|ZP_04138748.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis Bt407] gi|228781388|gb|EEM29589.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis Bt407] gi|228787852|gb|EEM35810.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820730|gb|EEM66755.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939381|gb|AEA15277.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis serovar chinensis CT-43] Length = 253 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAATQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|218231299|ref|YP_002366453.1| flagellar biosynthesis protein FliR [Bacillus cereus B4264] gi|218896702|ref|YP_002445113.1| flagellar biosynthetic protein FliR [Bacillus cereus G9842] gi|228900350|ref|ZP_04064579.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis IBL 4222] gi|228907401|ref|ZP_04071259.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis IBL 200] gi|228920478|ref|ZP_04083823.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952151|ref|ZP_04114243.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228964752|ref|ZP_04125859.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar sotto str. T04001] gi|229043524|ref|ZP_04191233.1| Type III secretion system inner membrane R protein [Bacillus cereus AH676] gi|229109224|ref|ZP_04238823.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock1-15] gi|229149973|ref|ZP_04278199.1| Type III secretion system inner membrane R protein [Bacillus cereus m1550] gi|296502369|ref|YP_003664069.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis BMB171] gi|218159256|gb|ACK59248.1| flagellar biosynthetic protein FliR [Bacillus cereus B4264] gi|218543336|gb|ACK95730.1| flagellar biosynthetic protein FliR [Bacillus cereus G9842] gi|228633495|gb|EEK90098.1| Type III secretion system inner membrane R protein [Bacillus cereus m1550] gi|228674234|gb|EEL29479.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock1-15] gi|228725746|gb|EEL76994.1| Type III secretion system inner membrane R protein [Bacillus cereus AH676] gi|228795002|gb|EEM42501.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228807505|gb|EEM54032.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839108|gb|EEM84404.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852262|gb|EEM97058.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis IBL 200] gi|228859237|gb|EEN03668.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis IBL 4222] gi|296323421|gb|ADH06349.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis BMB171] Length = 253 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|229069319|ref|ZP_04202609.1| Type III secretion system inner membrane R protein [Bacillus cereus F65185] gi|228713806|gb|EEL65691.1| Type III secretion system inner membrane R protein [Bacillus cereus F65185] Length = 253 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFRYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|114799957|ref|YP_759005.1| flagellar biosynthetic protein FliR [Hyphomonas neptunium ATCC 15444] gi|114740131|gb|ABI78256.1| flagellar biosynthetic protein FliR [Hyphomonas neptunium ATCC 15444] Length = 237 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 107/233 (45%), Gaps = 5/233 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M+ ++ R+ + ++PG+ I + RL + + + + + Sbjct: 1 MVMFMTVIARLSFVVFMMPGIGDQVISSRTRLFVLLGMAAAIAST--GVVAAPSAPGIGD 58 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L+ E+ +G G L+R+ L G+VI+ +IGL + + + A+T ++++ Sbjct: 59 LVLLLGSEVVIGFGLGALLRLSVWMLTIAGTVIAQSIGLAQFLGVAL-EHEAQTVTSNML 117 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + G L ++H V L++ Y IP+G+ + + + L L+ P Sbjct: 118 SLAGTTILLTANYHVAVVDGLMRLYTEIPLGEVGQVS--WPMIFDSFYSAMGFALMLAWP 175 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 F+ +++NI +G +NK +P + + F+ P+++G G + L +S+ ++ + Sbjct: 176 FVAANLLYNICLGFINKALPSLMVAFVGAPFMVGAGVMLLAISVSGMLIIWKD 228 >gi|300117308|ref|ZP_07055098.1| flagellar biosynthesis protein FliR [Bacillus cereus SJ1] gi|298725143|gb|EFI65795.1| flagellar biosynthesis protein FliR [Bacillus cereus SJ1] Length = 253 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 93/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ +A SI + D +D+ Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSYIKTTWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKN 234 >gi|170026113|ref|YP_001722618.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis YPIII] gi|169752647|gb|ACA70165.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis YPIII] Length = 264 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 99/233 (42%), Gaps = 3/233 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L + R +++LP + + +R +A ++ + P + N + Sbjct: 8 LTALALAMMRPYGILLILPLFTARSLGSSLLRNGLIVAIALPVTPLFLSAPIITN-SSPV 66 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + ++ EL +G V G + + + G +I T G + T + + L Sbjct: 67 TWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVL 126 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLS 186 I + + +QV AL SY ++PIGQ + F+ Q F + L + Sbjct: 127 FTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGIQPAADLLLFLQTEWQMMFELCLCFA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 P L ++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ + Sbjct: 187 LPALLVMVLADLSLGLINRSARQLNVFFLAMPIKSALALFLLLISLPYGLHHY 239 >gi|194292001|ref|YP_002007908.1| sctt: non flagellar t3S system conserved inner membrane protein. flir/mope/spar family. [Cupriavidus taiwanensis LMG 19424] gi|193225905|emb|CAQ71852.1| SctT: non flagellar T3S system conserved inner membrane protein. fliR/mopE/spaR family [Cupriavidus taiwanensis LMG 19424] Length = 271 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 5/236 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++M + +++ R+ + +LP LS IP R +A ++ + P +D V Sbjct: 21 VIMPIVMVMPRLLTAFTVLPFLSQQAIPGVARNGIVLAIALFVSPGARIDLDA---VAGG 77 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L+ E F+G + G+ ++ + LQ G +I G T + P+ +L Sbjct: 78 LWLVLIFKEAFIGLLLGMAFGLFFVALQMIGELIDFQTGSGNATFFDPVTQQEDGPMENL 137 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN--MLQTTFMIMLRL 185 + G+ + + +V+S+ P+ ++ S T F +++L Sbjct: 138 LSHFGIALFAALGGFIAMTGVIVESFAFWPVMSFGPEMSLASMGFANLYAGTLFSWVVKL 197 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++P L ++ + L+ + VPQ ++ + P I + L L L + ++V Sbjct: 198 AAPILLLLVIVELGFALIARFVPQFDVFQFAQPVKISVAFLMLVLMLAVMVDTLQG 253 >gi|167638815|ref|ZP_02397090.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0193] gi|177650496|ref|ZP_02933463.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0174] gi|254734623|ref|ZP_05192335.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. Western North America USA6153] gi|167513279|gb|EDR88650.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0193] gi|172083640|gb|EDT68700.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0174] Length = 253 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 96/232 (41%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S+ IP ++ F +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSVRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|85710191|ref|ZP_01041256.1| Flagellar protein FliR [Erythrobacter sp. NAP1] gi|85688901|gb|EAQ28905.1| Flagellar protein FliR [Erythrobacter sp. NAP1] Length = 264 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 89/239 (37%), Gaps = 2/239 (0%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + + R G+ ++ P + + Q R A+ ++ + W + + Sbjct: 12 EEQLWQILFLSIRCGAALLAAPMVGGMVVAPQFRALIAIVLAVFV--STWIPLPPLPEMM 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 V+ E+ +G G +++V IS +GL + TS+ + L Sbjct: 70 SFAAVLAVVQEVVIGAALGFVLQVAFAVPLIAAEQISGTMGLAIATSIDPASGAQSGALG 129 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + G+I L + I H F L++SY +P G V + Sbjct: 130 TYFGLILTLLFYAIGGHLLWFELLIESYRILPAGTHAFAETSARDIVAFAGYGIATAAAI 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 P + + + G +++ P + ++ + P + G L + + I+V QF+ + Sbjct: 190 GLPVVLVLLCVQVVTGTISRSAPALNLFALGLPAGVLAGIAALIVVMPIMVEQFTALLV 248 >gi|16802720|ref|NP_464205.1| flagellar biosynthesis protein FliR [Listeria monocytogenes EGD-e] gi|224498761|ref|ZP_03667110.1| flagellar biosynthesis protein FliR [Listeria monocytogenes Finland 1988] gi|224502017|ref|ZP_03670324.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL R2-561] gi|254829335|ref|ZP_05234022.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL N3-165] gi|254830331|ref|ZP_05234986.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 10403S] gi|254900086|ref|ZP_05260010.1| flagellar biosynthesis protein FliR [Listeria monocytogenes J0161] gi|254911361|ref|ZP_05261373.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935688|ref|ZP_05267385.1| flagellar biosynthesis protein FliR [Listeria monocytogenes F6900] gi|255028552|ref|ZP_05300503.1| flagellar biosynthesis protein FliR [Listeria monocytogenes LO28] gi|284801008|ref|YP_003412873.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 08-5578] gi|284994150|ref|YP_003415918.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 08-5923] gi|16410067|emb|CAC98756.1| lmo0678 [Listeria monocytogenes EGD-e] gi|258601747|gb|EEW15072.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL N3-165] gi|258608270|gb|EEW20878.1| flagellar biosynthesis protein FliR [Listeria monocytogenes F6900] gi|284056570|gb|ADB67511.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 08-5578] gi|284059617|gb|ADB70556.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 08-5923] gi|293589297|gb|EFF97631.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 253 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 86/235 (36%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ RV S + P L IP V++ F MA SI + +D+ Sbjct: 5 FFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISI----PVATWVDVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + Y L+KS+ L + L + ++ Sbjct: 121 LDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|152975182|ref|YP_001374699.1| flagellar biosynthesis protein FliR [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023934|gb|ABS21704.1| type III secretion system inner membrane R protein [Bacillus cytotoxicus NVH 391-98] Length = 253 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S +P ++ F + SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSVPAMAKVTFGLGLSI----TVADKVDVSHIQTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 VAYAGTQIVIGLALSKIVEILWNIPKMAGHILDFDIGLSQASLFDVNAGAQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + ++KS+ +L N S + L + + P Sbjct: 123 IFFLIIFISLGGIDYFVATILKSFQYTEAISKLLTTNFLDSLLATLLFAITSAVEIVLPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|296103626|ref|YP_003613772.1| flagellar biosynthetic protein FliR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058085|gb|ADF62823.1| flagellar biosynthetic protein FliR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 186 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 1/176 (0%) Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 ++ ++ +G GL +++ ++ G +I +GL+ T ++ + ++ Sbjct: 1 MLAKQVIIGAAMGLTLQLLFAAVRMAGEIIGMQMGLSFATFFDPGAG-NSPVISRFLNLL 59 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + H + L ++ T+PI F V F L L P + Sbjct: 60 VTLLFLAFNGHLWLLALLADTFQTLPIDATPLHAGGFMYLVTHAGMIFSQGLMLGLPVIA 119 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + N +GLLN+L PQ+ I+ I P + G L L L E + F GF Sbjct: 120 LLLCINFILGLLNRLTPQLSIFVIGFPLTLTFGMLALFLIAETLAPFFERLMATGF 175 >gi|229160730|ref|ZP_04288722.1| Type III secretion system inner membrane R protein [Bacillus cereus R309803] gi|228622745|gb|EEK79579.1| Type III secretion system inner membrane R protein [Bacillus cereus R309803] Length = 253 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 93/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F + SI + D +D+ Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSYIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAGTQIVIGLSLAKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|229017054|ref|ZP_04173973.1| Type III secretion system inner membrane R protein [Bacillus cereus AH1273] gi|229023235|ref|ZP_04179745.1| Type III secretion system inner membrane R protein [Bacillus cereus AH1272] gi|228738029|gb|EEL88515.1| Type III secretion system inner membrane R protein [Bacillus cereus AH1272] gi|228744227|gb|EEL94310.1| Type III secretion system inner membrane R protein [Bacillus cereus AH1273] Length = 253 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F + SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAATQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVVTILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 234 >gi|229096253|ref|ZP_04227226.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock3-29] gi|229115208|ref|ZP_04244618.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock1-3] gi|228668348|gb|EEL23780.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock1-3] gi|228687213|gb|EEL41118.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock3-29] Length = 253 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F + SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 AAYAATQIVIGLSLAKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKN 234 >gi|229102367|ref|ZP_04233075.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock3-28] gi|228681014|gb|EEL35183.1| Type III secretion system inner membrane R protein [Bacillus cereus Rock3-28] Length = 253 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 94/232 (40%), Gaps = 4/232 (1%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F + SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + ++ +G ++ + + G ++ IGL+ + ++ T L+++ Sbjct: 63 TAYAATQIVIGLSLAKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 I L+ + + ++KS+ +L + S + L + ++ P Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F + Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKN 234 >gi|315281329|ref|ZP_07869977.1| flagellar biosynthesis protein FliR [Listeria marthii FSL S4-120] gi|313615027|gb|EFR88523.1| flagellar biosynthesis protein FliR [Listeria marthii FSL S4-120] Length = 253 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 86/235 (36%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ RV S + P L IP V++ F MA SI + +D+ Sbjct: 5 FFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISI----PVATWVDVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEMIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + Y L+KS+ L + L + ++ Sbjct: 121 LDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|47095243|ref|ZP_00232854.1| flagellar biosynthetic protein FliR [Listeria monocytogenes str. 1/2a F6854] gi|47016314|gb|EAL07236.1| flagellar biosynthetic protein FliR [Listeria monocytogenes str. 1/2a F6854] Length = 244 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 4/230 (1%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 ++ RV S + P L IP V++ F MA SI + +D+ Sbjct: 1 MIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISI----PVATWVDVSGITTLPDLLLR 56 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 V E+ G L+ + + + G +I +G + + S + +++ Sbjct: 57 VTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILDTFF 116 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + + Y L+KS+ L + L + ++ P + Sbjct: 117 VVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIALPIMGS 176 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 177 IFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 226 >gi|238787479|ref|ZP_04631277.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia frederiksenii ATCC 33641] gi|238724266|gb|EEQ15908.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia frederiksenii ATCC 33641] Length = 257 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 94/228 (41%), Gaps = 3/228 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 L + R +++LP + + +R A ++ + P + L +++ L Sbjct: 3 LAMMRPYGMLLILPLFTARSLGSSLLRNSLVFAIALPVTPLFFSASLLLQDSLTSWFWLL 62 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 M EL +G + G + + + G +I T G + T S + + L + Sbjct: 63 CM-ELLIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGVLFTQLL 121 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLF 191 + + + V AL SY +P G + + F+ Q + + L + P L Sbjct: 122 TVLFLISGGFNLVLAALYGSYSILPAGSGIQPSPVMLQFLQSEWQLMYELCLNFALPALL 181 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ + Sbjct: 182 VMVLADLSLGLVNRSSQQLNVFFLAMPIKSALALFLLVISLPYALHHY 229 >gi|238899255|ref|YP_002924938.1| type III secretion system apparatus protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467016|gb|ACQ68790.1| type III secretion system apparatus protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 261 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 96/238 (40%), Gaps = 4/238 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L + R +++ P + + +R +A ++ + P + + + + Sbjct: 7 WLTALGLAMARPLGVLLIFPVFTTHSLGSSLLRNGLLVAIALPITPITISSSLIHSHI-L 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ +M+EL +G G + ++ S+I T G + +++ + + + Sbjct: 66 IHWCFAIMMELVIGVTIGFFAALPFWAIEMAASLIDTMRGATMASAINPTMGMQSSVFGI 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLR 184 L + + + + + + SY + G+ +FS F + Sbjct: 126 LFSQVLSVLFLIAGGFNSLLRVIYGSYDLLYPGEKILFFGEKLFSFIKMQWGLMFELCFN 185 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + P L ++ ++S+GL+N+ Q+ ++F++ P + L +S+ + + + Sbjct: 186 FALPALLVMLITDLSLGLINRSAQQLNVFFLAMPIKSIMALFLLLISLPFAFHHYLNE 243 >gi|229918644|ref|YP_002887290.1| flagellar biosynthetic protein FliR [Exiguobacterium sp. AT1b] gi|229470073|gb|ACQ71845.1| flagellar biosynthetic protein FliR [Exiguobacterium sp. AT1b] Length = 256 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 7/230 (3%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L R+ + +P S +P+ R+ F+ + + L + I + N + V Sbjct: 12 LTFARLSGFFVSVPLFSTRQLPVMHRVGFSAFLAYYAMFTLTEPIQMTN-----AFVLQV 66 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E+ +G + GLLI + Q G VI +GL + ++ + I L Sbjct: 67 VYEVMIGLLLGLLINILFFAPQIAGGVIDLQLGLAMASAYDPMFGGQSPLIGRFYYIFTL 126 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + H + + S+ P GQ + V ++ T M+ L+L+ P + Sbjct: 127 FILLTSNLHLLLIDGIYYSFQIYPPGQPMINFTEASLMMAVKVVTMTMMVALQLALPMMA 186 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ ++++G L K PQ I+ I + + G + L + + + S Sbjct: 187 SLLLVDLALGFLAKSAPQFNIFAIGFSFKLIAGFAVMVLLMGLTLTGISQ 236 >gi|16799761|ref|NP_470029.1| flagellar biosynthesis protein FliR [Listeria innocua Clip11262] gi|16413138|emb|CAC95918.1| lin0686 [Listeria innocua Clip11262] Length = 253 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 86/235 (36%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ RV S + P L IP V++ F MA SI + +D+ Sbjct: 5 FFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISI----PVATGVDVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + Y L+KS+ L + L + ++ Sbjct: 121 LDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIVLAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|47091641|ref|ZP_00229437.1| flagellar biosynthetic protein FliR [Listeria monocytogenes str. 4b H7858] gi|217965224|ref|YP_002350902.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|226223309|ref|YP_002757416.1| flagellar biosynthetic protein FliR [Listeria monocytogenes Clip81459] gi|254824042|ref|ZP_05229043.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL J1-194] gi|254853117|ref|ZP_05242465.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL R2-503] gi|254932042|ref|ZP_05265401.1| flagellar biosynthetic protein FliR [Listeria monocytogenes HPB2262] gi|254992441|ref|ZP_05274631.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL J2-064] gi|255521625|ref|ZP_05388862.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL J1-175] gi|300764489|ref|ZP_07074482.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL N1-017] gi|47019960|gb|EAL10697.1| flagellar biosynthetic protein FliR [Listeria monocytogenes str. 4b H7858] gi|217334494|gb|ACK40288.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|225875771|emb|CAS04474.1| Putative flagellar biosynthetic protein FliR [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606468|gb|EEW19076.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL R2-503] gi|293583595|gb|EFF95627.1| flagellar biosynthetic protein FliR [Listeria monocytogenes HPB2262] gi|293593271|gb|EFG01032.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL J1-194] gi|300514843|gb|EFK41897.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL N1-017] gi|307570217|emb|CAR83396.1| flagellar biosynthetic protein [Listeria monocytogenes L99] gi|313620098|gb|EFR91603.1| flagellar biosynthesis protein FliR [Listeria innocua FSL S4-378] gi|313624920|gb|EFR94828.1| flagellar biosynthesis protein FliR [Listeria innocua FSL J1-023] gi|328467247|gb|EGF38327.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 1816] gi|328475643|gb|EGF46392.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 220] gi|332311103|gb|EGJ24198.1| Flagellar biosynthetic protein FliR [Listeria monocytogenes str. Scott A] Length = 253 Score = 101 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 86/235 (36%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ RV S + P L IP V++ F MA SI + +D+ Sbjct: 5 FFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISI----PVATGVDVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + Y L+KS+ L + L + ++ Sbjct: 121 LDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|117928067|ref|YP_872618.1| type III secretion system inner membrane R protein [Acidothermus cellulolyticus 11B] gi|117648530|gb|ABK52632.1| type III secretion system inner membrane R protein [Acidothermus cellulolyticus 11B] Length = 259 Score = 101 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 87/228 (38%), Gaps = 3/228 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++ L R + ++++P IP V+ FAMA + P L Sbjct: 9 LLVAFLLATIRTSAWLVVVPIFGTRIIPGMVKAAFAMALA---FPVSGALAPLAPAPQVL 65 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ + G G++ ++ G ++ G +L + ++ L + Sbjct: 66 PLCTAILQNVAAGLAMGVVTLTLFAAVRAAGGLLDYFGGFSLTYAFDPMAVQNDSVLARM 125 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 ++ + L+ + + L+ SY IP+ + + + + L ++ Sbjct: 126 YDLLAVTLLFAGGGYLLLLKGLLSSYTVIPLASSHPARILAELATVNIGSFAVSCLEIAG 185 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P L +V +I +GLL K+ P + ++ + P I + + + + Sbjct: 186 PLLAVLVVADIGLGLLTKIAPALNVFSLGFPLKILVTLTLVGGTFVAL 233 >gi|195953032|ref|YP_002121322.1| type III secretion system inner membrane R protein [Hydrogenobaculum sp. Y04AAS1] gi|195932644|gb|ACG57344.1| type III secretion system inner membrane R protein [Hydrogenobaculum sp. Y04AAS1] Length = 258 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 102/239 (42%), Gaps = 5/239 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++ LI R+ S + L P +P ++ F +AFS+ L ++ + + Sbjct: 10 LITFLLITLRISSIVFLAPIFGD--LPNSFKIFFVIAFSVSLY--YYNPVKPVYTDSFII 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + + E LG + L++R G +S+++GL+ T + T L + Sbjct: 66 LTLMALKEFSLGFIISLILRFLVDIFFVFGEFVSSSLGLSNATILNPLMG-NSTILGTYF 124 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + +++ L +S +IP+G + +N+ +F +L+ P Sbjct: 125 SYFFMGLFAASSGFEYIYFILSESLKSIPLGVFDLYNMRPEFILNIFYKSFYTAFQLALP 184 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + +V NI + +N+L+PQI ++ + P +G +FL L ++ F + F Sbjct: 185 MIAIGLVMNIILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFEHYF 243 >gi|289433956|ref|YP_003463828.1| flagellar biosynthetic protein FliR [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170200|emb|CBH26740.1| flagellar biosynthetic protein FliR [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313639093|gb|EFS04069.1| flagellar biosynthesis protein FliR [Listeria seeligeri FSL S4-171] Length = 253 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 89/235 (37%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ CR+ S + P L +IP V++ F MA SI + + D+ Sbjct: 5 FFLAVVIVFCRIASFLFFFPLLKGRHIPNSVKVIFGMAISIPVATVV----DVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + + L+KS+ L F+ L + ++ Sbjct: 121 LDTFFVVIFLSLQGLDYLIFYLMKSFEFTASVSILFEKGFIDLFLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|218887501|ref|YP_002436822.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758455|gb|ACL09354.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 278 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 6/243 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---LQNFVN 65 ++++ + R+ + P L+ S + Q+R+ A + + P + + + + Sbjct: 23 LLAVVAGMPRLFMVAQVAPFLAGSVVTGQLRMVLVFACYLPVHPVILGQLPKGSVFDLTL 82 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +Y LV+ E +G V GLL + +Q G +I G ++ TP Sbjct: 83 LGHYGALVLKESLMGLVLGLLAGIAFWTVQSAGFLIDNQRGASMAEESDPMSGEQTTPTG 142 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG---NIFSSFVNMLQTTFMIM 182 + + + + L SY P+ + F + M Sbjct: 143 AFLLQTMMYLFYTSGAFLAFLGLLYASYEIWPVPSLAPLAWSIEVPLLFAGRVAWLMSHM 202 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + L+ P + ++ +IS+GL+N+ Q+ +Y ++ P + SL L L + + Sbjct: 203 VLLAGPLVVACLLADISLGLVNRFASQLNVYVLAMPVKSAVASLLLVLYFGALAAKTPDL 262 Query: 243 FLY 245 F Sbjct: 263 FAE 265 >gi|83647784|ref|YP_436219.1| type III secretory pathway subunit EscT [Hahella chejuensis KCTC 2396] gi|83635827|gb|ABC31794.1| Type III secretory pathway, component EscT [Hahella chejuensis KCTC 2396] Length = 262 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 97/250 (38%), Gaps = 4/250 (1%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTID 59 MT + V R+ + + ++P LS S+ +R ++ S+ L P + + Sbjct: 2 MTHLMSDTLTLFMFTVPRLLAAMSVMPFLSKSFFGGTLIRNGVVLSLSLFLFPIVDEGYK 61 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + Y+ +++ E+ +G G L + L+ G I G + ++M Sbjct: 62 PETM-APFMYALIILKEVIIGFCLGWLAALPFWALEAVGFFIDNQRGSTMASAMNPLTGS 120 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQT 177 +P+ L ++ + A+ SY PI + F L Sbjct: 121 QASPVGILFVQTFTTLFFLGGNFLTLMGAIYASYHAWPIFSFFPRIELSAAGFFFAQLDY 180 Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 I++ ++P + + +GL+++ PQ+ ++F+S P + + L + +++ Sbjct: 181 FMSIVVLFAAPLIACMFLAEFGLGLVSRFAPQLNVFFLSMPIKSLVCMVMLTFYVGVLMR 240 Query: 238 QFSHSFLYGF 247 F +L F Sbjct: 241 IFDERYLRTF 250 >gi|62180012|ref|YP_216429.1| secretion system apparatus SsaT [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127645|gb|AAX65348.1| Secretion system apparatus SsaT [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714479|gb|EFZ06050.1| secretion system apparatus SsaT [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 259 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 85/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F+S Sbjct: 159 PGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFLS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|218288312|ref|ZP_03492611.1| type III secretion system inner membrane R protein [Alicyclobacillus acidocaldarius LAA1] gi|218241671|gb|EED08844.1| type III secretion system inner membrane R protein [Alicyclobacillus acidocaldarius LAA1] Length = 258 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 87/232 (37%), Gaps = 1/232 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R I+ P LS +Y P ++ A+A + +P + ++ + Sbjct: 12 FLLMAARTSGFILAAPILSSAYWPNLAKVALALALASFAVPSVHASVP-DIATQPGAFVV 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +E +G V G + + G ++ IG+ + +S+ + Sbjct: 71 DFALEAVVGVVLGFVATWIFNTINIAGQLVDLQIGMAVADLAMPGFGQQAGVFSSVYNVW 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + + A+++S+ IPI + + + T ++ + ++ P Sbjct: 131 FSLLFIGMGGLGGLSSAVLESFRLIPIADWHLPTDWIALCAQTMGTVMLMGVDVALPVFA 190 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + +++ LL + VPQ+ + + P + +G +++ + V F Sbjct: 191 SLFLCDVTFALLARAVPQMNAFVVELPAKLFVGLASFAVALPVTVGLFRQLL 242 >gi|238785153|ref|ZP_04629147.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia bercovieri ATCC 43970] gi|238713968|gb|EEQ05986.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia bercovieri ATCC 43970] Length = 264 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 3/234 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L + R +++LP + + +R A ++ + P L+ + L + Sbjct: 7 WLGALGLAMMRPYGTLLILPLFTARSLGSALLRNALIFAIALPITP-LFFSPSLMTHESF 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + L EL +G + G + + + G +I T G + T S + + Sbjct: 66 TAWFGLFCTELLIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRL 185 L + + + + V AL SY T+PIG ++ + F+ Q + + L Sbjct: 126 LFTQLLTVLFLISGGFNLVLGALYGSYDTLPIGSGIHPSSAMLPFLQSEWQLMYELCLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + P + ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ + Sbjct: 186 ALPAMMVMVLADLSLGLINRSAQQLNVFFLAMPIKSALALLLLLISLPYALHHY 239 >gi|94986992|ref|YP_594925.1| Type III secretion component protein SctT [Lawsonia intracellularis PHE/MN1-00] gi|94731241|emb|CAJ54604.1| Type III secretion component protein SctT [Lawsonia intracellularis PHE/MN1-00] Length = 271 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 90/241 (37%), Gaps = 6/241 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL---WDTIDLQNFVN 65 ++ + R+ I ++P + + + Q+R+ +F ++L P L I + Sbjct: 16 FIAFLIGTPRLFMIIQVVPFMGNNIVTGQLRVVVVFSFYLLLSPALVAQLPHIPEVDPSL 75 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +V+ E F+G G L + ++ G I G + +PL Sbjct: 76 LPRILAIVIKEGFIGFFLGYLGSMVFWMIESVGLFIDNQRGAAMAAQTDPLSGSQTSPLG 135 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG---NIFSSFVNMLQTTFMIM 182 S + + + + K+Y P + + + + + Sbjct: 136 SFLFQCLVYIFFTSGAFITFLTLIYKTYEFWPPHEFIPMSWKMRLPELIIKQVDWLMAYT 195 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + L+ P ++ ++S+GL+N+ Q+ +Y ++ P + + L ++++ + + Sbjct: 196 MLLAGPIAVACLLTDVSLGLVNRFASQLNVYVLAMPIKSAVAAFLLIFYFKLLLEKATFL 255 Query: 243 F 243 F Sbjct: 256 F 256 >gi|258511390|ref|YP_003184824.1| type III secretion system inner membrane R protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478116|gb|ACV58435.1| type III secretion system inner membrane R protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 258 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 88/236 (37%), Gaps = 1/236 (0%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R I+ P LS +Y P ++ A+A + +P + ++ + Sbjct: 12 FLLMAARTSGFILAAPILSSAYWPNLAKVALALALASFAVPSVHASVP-DIATQPGPFVV 70 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 +E +G V G + + G ++ IG+ + +S+ + Sbjct: 71 DFALEAVVGVVLGFVATWIFNTMNIAGQLVDLQIGMAVADLAMPGFGQQAGVFSSVYNVW 130 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L + + A+++S+ IPI + + + T ++ + ++ P Sbjct: 131 FSLLFIGMGGLGGLSSAVLESFRLIPIADWHLPTDWIALCAQTMGTVMLMGVDVALPVFA 190 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + +++ LL + VPQ+ + + P + +G +++ + V F F Sbjct: 191 SLFLCDVTFALLARAVPQMNAFVVELPAKLFVGLASFAVALPVTVGLFRQLLNLVF 246 >gi|330940693|gb|EGH43705.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. pisi str. 1704B] Length = 143 Score = 100 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Query: 114 GISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN 173 ++ ++ + ++ L ++ H V LV+S+ T+P+G L N F N Sbjct: 1 DPTNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNN-FWELAN 59 Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 L +RL P + ++ NI+ G++ + PQ+ I+ I P + +G + L +++ Sbjct: 60 GLGWVLASGMRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWMTMG 119 Query: 234 IIVYQFS 240 I+ Q+ Sbjct: 120 DILNQYQ 126 >gi|205352863|ref|YP_002226664.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272644|emb|CAR37554.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|309243391|gb|ADO51967.1| SsaT [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627935|gb|EGE34278.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 259 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F+S Sbjct: 159 PGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFLS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L +S ++ + Sbjct: 219 MPLKSISVLLTLLISFPYALHHY 241 >gi|322615095|gb|EFY12018.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619936|gb|EFY16809.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622248|gb|EFY19093.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627770|gb|EFY24560.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632885|gb|EFY29629.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636624|gb|EFY33327.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641183|gb|EFY37825.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644882|gb|EFY41415.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650282|gb|EFY46696.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655855|gb|EFY52157.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660181|gb|EFY56420.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665253|gb|EFY61441.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669510|gb|EFY65658.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673436|gb|EFY69538.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677364|gb|EFY73428.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679973|gb|EFY76012.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687445|gb|EFY83417.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194102|gb|EFZ79301.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198583|gb|EFZ83684.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202909|gb|EFZ87944.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208629|gb|EFZ93567.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211165|gb|EFZ96012.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217606|gb|EGA02321.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218955|gb|EGA03465.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229408|gb|EGA13531.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232631|gb|EGA16727.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240331|gb|EGA24375.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242680|gb|EGA26701.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245891|gb|EGA29879.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252455|gb|EGA36302.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256474|gb|EGA40207.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260037|gb|EGA43662.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267200|gb|EGA50685.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271477|gb|EGA54898.1| type III secretion system protein SsaT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 259 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIIMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|56413608|ref|YP_150683.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168463169|ref|ZP_02697100.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197362532|ref|YP_002142169.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127865|gb|AAV77371.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|195634372|gb|EDX52724.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094009|emb|CAR59505.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 259 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGVEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|16760490|ref|NP_456107.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141750|ref|NP_805092.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213426014|ref|ZP_03358764.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581365|ref|ZP_03363191.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613055|ref|ZP_03370881.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647289|ref|ZP_03377342.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854182|ref|ZP_03382714.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289805083|ref|ZP_06535712.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289827204|ref|ZP_06545927.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25352861|pir||AG0696 probable type III secretion protein ssaT [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502786|emb|CAD01944.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137378|gb|AAO68941.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 259 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|254469818|ref|ZP_05083223.1| type III secretion apparatus protein SpaR/YscT/HrcT [Pseudovibrio sp. JE062] gi|211961653|gb|EEA96848.1| type III secretion apparatus protein SpaR/YscT/HrcT [Pseudovibrio sp. JE062] Length = 280 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 86/231 (37%), Gaps = 3/231 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L L R+ + + + + R M +I L P+ +D + Sbjct: 15 FLVLLLTFPRIFAVFATSQLFNATLMSRMARNVVVMVIAIPLYPYNLQYVDGFSPTGSM- 73 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + E +G + G I +Q G++I G + +S+ +P+ L Sbjct: 74 FIVYFFKEYAIGFLIGYTISCLLWAVQSAGTLIDNQRGAAVASSIDPMLGNESSPIGDLF 133 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLS 186 +L L++ + + SY P+ + + +++ +M ++ Sbjct: 134 SRAFILYLFLTPGFFFILTLVYNSYMIFPVTEFVPVLPEEFPELILSIFDNAMRLMFIMA 193 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 +P + + ++ ++++ PQI ++ ++ P G+ + L + ++ Sbjct: 194 APLVILMFLSEFALAIISRFDPQIQVFILAMPIKSGVAVILLTFYLSFLLP 244 >gi|46906929|ref|YP_013318.1| flagellar biosynthesis protein FliR [Listeria monocytogenes serotype 4b str. F2365] gi|46880195|gb|AAT03495.1| flagellar biosynthetic protein FliR [Listeria monocytogenes serotype 4b str. F2365] Length = 253 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 86/235 (36%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ RV S + P L IP V++ F MA SI + +D+ Sbjct: 5 FFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISI----PVATGVDVSGITMLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + Y L+KS+ L + L + ++ Sbjct: 121 LDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|168233616|ref|ZP_02658674.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471729|ref|ZP_03077713.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458093|gb|EDX46932.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332340|gb|EDZ19104.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 259 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQAEWRTLYQLCVSFSVPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|315301908|ref|ZP_07872921.1| flagellar biosynthesis protein FliR [Listeria ivanovii FSL F6-596] gi|313629724|gb|EFR97844.1| flagellar biosynthesis protein FliR [Listeria ivanovii FSL F6-596] Length = 253 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 89/235 (37%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ CR+ S + P L +IP V++ F MA SI + + D+ Sbjct: 5 FFLAVVIVFCRIASFLFFFPLLKGRHIPNSVKVIFGMAISIPVATVV----DVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + + L+KS+ L F+ L + ++ Sbjct: 121 LDTFFVVIFLSLQGLDYLIFYLMKSFEFTASVSILFEKGFIDLFLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|167551610|ref|ZP_02345364.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442971|ref|YP_002040672.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401634|gb|ACF61856.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205323640|gb|EDZ11479.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 259 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|323143901|ref|ZP_08078563.1| type III secretion apparatus protein SpaR/YscT/HrcT [Succinatimonas hippei YIT 12066] gi|322416328|gb|EFY07000.1| type III secretion apparatus protein SpaR/YscT/HrcT [Succinatimonas hippei YIT 12066] Length = 272 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 95/245 (38%), Gaps = 7/245 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + L R+G I ++P + + V++ +A I L PF+ I+ +F Sbjct: 15 LHLSAFILGSIRIGVFIAMVPFFG-PQVSVAVKMPITVALYIPLHPFMLTIIEPLSFSAV 73 Query: 67 A---YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 + +V+ E+ +G + L + G +I G ++ S I +P Sbjct: 74 GDFFGFIIIVLKEILIGIIFAWLCSLIFYVALSAGVIIDNQRGASMAQSADILSGAESSP 133 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFM 180 L S++ + + + ++ P + L N L Sbjct: 134 LGSVLFLAMVTLFFASGAFLAFLNIFYTTFIAWPPTEFLPALLSSNTAIFSAQSLNWMME 193 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 + + +PF+ ++ +I++GL+N+ PQ+ ++ +S P G+ + + + + Sbjct: 194 QTVLVCAPFILVALLCDIALGLINRFAPQLNVFILSMPIKSGVCAFLIIFYLSPFLDHSE 253 Query: 241 HSFLY 245 F Y Sbjct: 254 DLFNY 258 >gi|168240934|ref|ZP_02665866.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263747|ref|ZP_02685720.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451950|ref|YP_002045424.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265421|ref|ZP_03165495.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390667|ref|ZP_03217278.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207857073|ref|YP_002243724.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194410254|gb|ACF70473.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197243676|gb|EDY26296.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603112|gb|EDZ01658.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339098|gb|EDZ25862.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347613|gb|EDZ34244.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708876|emb|CAR33206.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 259 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|171319607|ref|ZP_02908703.1| type III secretion system inner membrane R protein [Burkholderia ambifaria MEX-5] gi|171095178|gb|EDT40180.1| type III secretion system inner membrane R protein [Burkholderia ambifaria MEX-5] Length = 252 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 5/229 (2%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 M+ L+ RVG +M P + +P+++R+C +A + L L Q Sbjct: 8 GWAMASLLLSLRVGPLVMFAPPFAQLRVPLRIRVCLVLALAGALATPL----PAQLRNAP 63 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 A + EL LG ++ L F G + G L T + + Sbjct: 64 AMLVASAISELALGFTLAFPLQAAFAALSFAGRALDVQAGFGLATVIDPGSRSQAPLFGT 123 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L+ + + H ++ + S +P G + +F+ I + Sbjct: 124 LLTLGAGAICFASGAHLELLRLVAASIERMPPGTARIVSSP-QAFIGYFGRVMGIGIGAV 182 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + + + ++SI L++ +PQ+ + + LSI ++ Sbjct: 183 AAVMLALFLIDLSIAFLSRTLPQLNALMLGLQVKAIAAIVVTALSIGLL 231 >gi|16764771|ref|NP_460386.1| type III secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995055|ref|ZP_02576145.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|3024667|sp|P96068|SSAT_SALTY RecName: Full=Secretion system apparatus protein ssaT gi|1695195|emb|CAA68201.1| secretion system apparatus, SsaT [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419942|gb|AAL20345.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327199|gb|EDZ13963.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246627|emb|CBG24437.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993310|gb|ACY88195.1| type III secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157956|emb|CBW17451.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912406|dbj|BAJ36380.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129693|gb|ADX17123.1| type III secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988308|gb|AEF07291.1| type III secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 259 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 83/203 (40%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|198243734|ref|YP_002215711.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938250|gb|ACH75583.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623458|gb|EGE29803.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 259 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQAEWRTLYQLCVSFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|332159964|ref|YP_004296541.1| type III secretory pathway, component EscT [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664194|gb|ADZ40838.1| Type III secretory pathway, component EscT [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862411|emb|CBX72570.1| secretion system apparatus protein ssaT [Yersinia enterocolitica W22703] Length = 264 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 99/234 (42%), Gaps = 3/234 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L + R +++LP + + +R A ++ + P + T L + Sbjct: 7 WLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNSVVFAIALPVTPIFFTTSLLYHDSLT 66 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ L + EL +G + G + + + G +I T G + T S + + Sbjct: 67 GWFWVLCI-ELMVGVLIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRL 185 L I + + + V AL SY +P G + + F+ Q + + L Sbjct: 126 LFTQILTVLFLISGGFNLVLTALYSSYEILPAGSGIQPTSAILQFLQSEWQLMYELCLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + P + ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ + Sbjct: 186 ALPAMLVMVLADLSLGLINRSSQQLNVFFLAMPIKSALALLLLLISLPYALHHY 239 >gi|313634415|gb|EFS01002.1| flagellar biosynthesis protein FliR [Listeria seeligeri FSL N1-067] Length = 253 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 89/235 (37%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ CR+ S + P L +IP V++ F MA SI + + D+ Sbjct: 5 FFLAVVIVFCRIASFLFFFPLLKGRHIPNSVKVIFGMAISIPVATVV----DVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + + L+KS+ L F+ L + ++ Sbjct: 121 LDTFFVVIFLSLQGLDYLIFYLMKSFEFTASVLILFEKGFIDLFLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|116872067|ref|YP_848848.1| flagellar biosynthesis protein FliR [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740945|emb|CAK20065.1| flagellar biosynthetic protein FliR [Listeria welshimeri serovar 6b str. SLCC5334] Length = 253 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ RV S + P L IP V++ F MA SI + +D+ Sbjct: 5 FFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISI----PVATGVDVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + + L+KS+ L + L + ++ Sbjct: 121 LDTFFVVIFLSLQGMDYLIFYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|168822291|ref|ZP_02834291.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224584068|ref|YP_002637866.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|205341312|gb|EDZ28076.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224468595|gb|ACN46425.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320086101|emb|CBY95875.1| Secretion system apparatus protein ssaT [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 259 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|283836565|ref|ZP_06356306.1| type III secretion apparatus protein SpaR/YscT/HrcT [Citrobacter youngae ATCC 29220] gi|291067494|gb|EFE05603.1| type III secretion apparatus protein SpaR/YscT/HrcT [Citrobacter youngae ATCC 29220] Length = 264 Score = 99.7 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 103/240 (42%), Gaps = 3/240 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDL-QNFVNRAYY 69 LF+ V R +++P L+ + +R + +I LP L + + L Q V Y+ Sbjct: 15 LFIAVLRPLGIFIIMPLLTSKNLAGTMIRNSIIILITIPALPGLKENVFLSQPHVIDFYF 74 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + E+F+G + G + + + G ++ T G ++ + + + T L Sbjct: 75 FLALSREVFIGVLIGFVAAIPFWAIDSAGFLLDTMRGSSMGNIYNPTLAESSTLLGVFFS 134 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSP 188 + + +V +Q+ L +SY P G+ ++F ++ V F++ L S P Sbjct: 135 QLFTVIFFVCGGMNQLITTLYQSYVLFPPGESISFNRHLLDFVVQQWNMLFVLFLHFSIP 194 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 ++ ++ +GLLN+ Q+ ++F++ L + L ++I + + L + Sbjct: 195 AAAVMLLTDVGMGLLNRSAQQLNVFFLAMSVKSILALIVLMITIAFSLDYVRETLLRNLY 254 >gi|21672369|ref|NP_660436.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008465|sp|Q8KA35|FLIR_BUCAP RecName: Full=Flagellar biosynthetic protein fliR gi|21622974|gb|AAM67647.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 258 Score = 99.7 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 102/236 (43%), Gaps = 3/236 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 I++ + F + R+ + P + + +V++ + + ++ PFL + + Sbjct: 11 ILISNFFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFL---PKVNVELFS 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L+ ++ +G GL + +G +I+ IGL+ + + + ++ Sbjct: 68 IIGLFLLFQQILIGIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYIGTSLISR 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + I+ LL ++ H + + L+ S+ IP+ NIF F+ F+ + + Sbjct: 128 WLNILNLLFFLTLNVHLYLVFMLIDSFYKIPVDVNFLSANIFFIFLKFSSNIFLNGVMFA 187 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + F+++ + + +LN+L PQI I+ I P + +G L L + + F Sbjct: 188 LPIMIFFLISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFFKSL 243 >gi|168239305|ref|ZP_02664363.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734680|ref|YP_002114434.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710182|gb|ACF89403.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288015|gb|EDY27402.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 259 Score = 99.7 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQAEWRTLYQLCISFSVPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|197249409|ref|YP_002146622.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|238913176|ref|ZP_04657013.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197213112|gb|ACH50509.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 259 Score = 99.7 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R M+ + +LP ++ + + + LV E+ +G + G V + Sbjct: 39 LRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + T + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQAEWRTLYQLCVSFSVPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLTLLISFPYALHHY 241 >gi|312883876|ref|ZP_07743593.1| Type III secretory pathway, component EscT [Vibrio caribbenthicus ATCC BAA-2122] gi|309368334|gb|EFP95869.1| Type III secretory pathway, component EscT [Vibrio caribbenthicus ATCC BAA-2122] Length = 222 Score = 99.7 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 79/211 (37%), Gaps = 3/211 (1%) Query: 37 QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQF 96 +R + ++ + P + DL + + ++ E+ LG + G + + Sbjct: 1 MIRNGVLCSIALFIFPMVQQQ-DLPAEADGLWLMVILGKEVLLGLLIGFFAAIPFWAIDA 59 Query: 97 TGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTI 156 G ++ G + + + TP L+ + + YAL SY + Sbjct: 60 AGFLVDNQRGAAMASMFNPTLGGQSTPTAVLLTQTLITLFFSSGGFVVFMYALFTSYTSW 119 Query: 157 PIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214 P+ S F + ++ + +S+P + + + L+++ PQ+ ++ Sbjct: 120 PVMIFFPTVTDAWVSFFYAQFEQLLLLGVLMSAPLVLAMFLAEFGLALISRFAPQLNVFS 179 Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 ++ P + S+ L + + +++ F F Sbjct: 180 LAMPIKSAVASVLLIVYVGLMMNHFESLFSE 210 >gi|76818606|ref|YP_335846.1| SctT [Burkholderia pseudomallei 1710b] gi|76583079|gb|ABA52553.1| SctT [Burkholderia pseudomallei 1710b] Length = 531 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 229 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 285 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 286 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 345 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 346 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 405 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 406 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 449 >gi|42525572|ref|NP_970670.1| flagellar biosynthetic protein FliR [Treponema denticola ATCC 35405] gi|13122808|gb|AAK12644.1|AF232219_3 FliR [Treponema denticola] gi|41815583|gb|AAS10551.1| flagellar biosynthetic protein FliR [Treponema denticola ATCC 35405] Length = 264 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 3/238 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L R+ + +M P +SM + ++ A + ++ P+ + N + Y Sbjct: 14 FLLAAVRIFAILMTSPLMSMRNVSRIAKVALAGLTAFMVTPYAYPNFGNLNAFSLEYLLL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L+ L + G I + G S +G + + I Sbjct: 74 LLGEGLIG-VLTGFFISILFSTFSTAGQFFSFQMGFGASGVFDALAQVENPLVGQYFNFI 132 Query: 132 GLLALWVIDF-HHQVFYALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPF 189 +L I+ ++KS + L + + + + F+ + ++ P Sbjct: 133 AVLIFLRINGFQRLFLGGIMKSIEHVNCFLFLERQEELSTYLLGAVGNLFLNAMIIALPV 192 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + I+ +I++GLL K PQ+ + P I L L++ + F GF Sbjct: 193 MGTLILIHITMGLLTKAAPQMNLLSEGFPITILTAFFILALALPFFINTFEIILEKGF 250 >gi|161614162|ref|YP_001588127.1| hypothetical protein SPAB_01904 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363526|gb|ABX67294.1| hypothetical protein SPAB_01904 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 215 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 82/197 (41%), Gaps = 1/197 (0%) Query: 44 MAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVIST 103 M+ + +LP ++ + + + LV E+ +G + G V + G ++ T Sbjct: 1 MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT 60 Query: 104 AIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN 163 G + T + + L + ++ + L +SY +P G+ L Sbjct: 61 LRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLL 120 Query: 164 FGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIG 222 F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S P Sbjct: 121 FDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSI 180 Query: 223 LGSLFLCLSIEIIVYQF 239 L L L +S ++ + Sbjct: 181 LVLLTLLISFPYALHHY 197 >gi|161503485|ref|YP_001570597.1| hypothetical protein SARI_01561 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864832|gb|ABX21455.1| hypothetical protein SARI_01561 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 259 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 83/203 (40%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R ++ + +LP ++ + + L+ E+ +G + G V + Sbjct: 39 LRNGVLISLTFPVLPIIYQQHIFMHVGKDYSWLGLITGEIIIGFLIGFCAAVPFWAVDMA 98 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G ++ T G + + + L + ++ + L +SY +P Sbjct: 99 GFLLDTLRGATMGAIFNSTMEAETSLFGLLFSQFLCMIFFISGGMEFILNILYESYQYLP 158 Query: 158 IGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G+ L F F ++ + +T + + + S P + ++ ++++GLLN+ Q+ ++F S Sbjct: 159 PGRTLLFDRQFLKYIQVEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L L +S ++ + Sbjct: 219 MPLKSILVLLMLLISFPYALHHY 241 >gi|332297776|ref|YP_004439698.1| flagellar biosynthetic protein FliR [Treponema brennaborense DSM 12168] gi|332180879|gb|AEE16567.1| flagellar biosynthetic protein FliR [Treponema brennaborense DSM 12168] Length = 279 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 8/245 (3%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN----RA 67 L+ R + IM LP SM + ++ + ++LP + Q Sbjct: 12 YLLVAVRCFALIMTLPLFSMRGVSRAAKIAVTGYVAFLVLPVSYGAGYEQFIDIYGAFTL 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y L++ E LG + G I V G S +GL+ + + + Sbjct: 72 EYVLLLIGEGLLGIITGFYISVIFAAFSTAGQFFSFQMGLSAAEAYDSLSQVENPLMGQY 131 Query: 128 IGIIGLLALWVI-DFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIML 183 + +I +L + F + +S+ ++ + + ++ L F L Sbjct: 132 LNLIAMLLFLQVKGFQQLFLGGIFRSFQSLNALALVLPETRSAFLNFLLSGLTDLFFDAL 191 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +S P + + + ++++GLL+K PQ+ + P + +G L L L + + F SF Sbjct: 192 MISLPMVGTFFLVSVAMGLLSKAAPQMNLLSEGIPLTMLVGFLLLFLLLPSMCDLFVRSF 251 Query: 244 LYGFF 248 F+ Sbjct: 252 DTAFY 256 >gi|325475308|gb|EGC78493.1| FliR [Treponema denticola F0402] Length = 264 Score = 99.0 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 3/238 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L R+ + +M P +SM + ++ A + ++ P+ + N + Y Sbjct: 14 FLLAAVRIFAILMTSPLMSMRNVSRIAKVALAGLTAFMVTPYAYPNFGNLNAFSLEYLLL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L+ L + G I + G S +G + + I Sbjct: 74 LLGEGLIG-VLTGFFISILFSTFSTAGQFFSFQMGFGASGVFDALAQVENPLVGQYFNFI 132 Query: 132 GLLALWVIDF-HHQVFYALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPF 189 +L I+ ++KS + L + + + + F+ + ++ P Sbjct: 133 AVLIFLRINGFQRLFLGGIMKSIEHVNCFLFLERQEELSTYLLGAVGNLFLNAMIIALPV 192 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + I+ +I++GLL K PQ+ + P I L L++ + F GF Sbjct: 193 MGTLILIHITMGLLTKAAPQMNLLSEGFPITILTAFFILALALPFFINTFEIILEKGF 250 >gi|34498077|ref|NP_902292.1| surface presentation of antigens secretory protein [Chromobacterium violaceum ATCC 12472] gi|34103932|gb|AAQ60292.1| surface presentation of antigens; secretory proteins [Chromobacterium violaceum ATCC 12472] Length = 255 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 90/232 (38%), Gaps = 7/232 (3%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + + RV +LP L+ + + VR AM ++ L P + + Sbjct: 11 GWVAAAAIGFARVAPVFFILPFLNGNTLTGMVRTSVAMLVALGLWP---HPPLAMHAMQA 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 L+M E +G + G L+ GS+I G L +S+ ++ + + + + Sbjct: 68 WPLLALLMREATVGLLLGCLLAWPFWAFHAMGSIIDNQRGATLSSSIDPANGVDTSEMAN 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTI-PIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ + + + +SY + P+G L + +++L + L Sbjct: 128 LLNLFAAAVYLQGGGMELMLDVMRQSYQLLDPLGDGLPP---LAPVLSLLNQVIAKSIVL 184 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 +SP + ++ +GLL++ PQ+ + +S L + L ++ Sbjct: 185 ASPVMATLLLSEAVLGLLSRFAPQMNAFAVSLTVKSAAALLIMLLYFAPVLP 236 >gi|296534147|ref|ZP_06896643.1| flagellar biosynthetic protein FliR [Roseomonas cervicalis ATCC 49957] gi|296265523|gb|EFH11652.1| flagellar biosynthetic protein FliR [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 1/203 (0%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+G+C M+LPGL +P+ VRL A+A +LLP L + + + A +L+ +E+ Sbjct: 23 RMGACGMVLPGLGEQEVPVTVRLALALAVVALLLPVLGPQLPPEP-QDMAGLVRLIALEV 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G L R+ +Q G I IGL+ S + T L G+ + L Sbjct: 82 AIGFWIGWLARLMVYAVQVAGQAIGLMIGLSSVLSQDPTMGEGSTALGRFFGLAAVSLLL 141 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + AL +SY +P+G L G + +F + LRL++P + ++ Sbjct: 142 ASGLYALPLRALAESYALLPVGAPLPAGPAAEAVAQASAASFALALRLAAPLILLTLLLQ 201 Query: 198 ISIGLLNKLVPQIPIYFISTPYL 220 + GLL ++ PQ +Y ++ P Sbjct: 202 MGSGLLARIAPQAQVYILALPAQ 224 >gi|167589636|ref|ZP_02382024.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ubonensis Bu] Length = 269 Score = 98.6 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 81/226 (35%), Gaps = 4/226 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L ++ R+ + ++P + + VR A+ + + P + + + Sbjct: 18 LLYVMPRLLPIMFVVPVFNEQIVTGLVRNGIAVVIAAFVAPAIDPAQVAA--LPFLMWCL 75 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV E +G + +Q G +I G P + + + Sbjct: 76 LVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFV 135 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + + +SY PIG + + V T F M++L++P Sbjct: 136 AIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFAWMVKLAAPV 195 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + ++ + IGL+ + VPQ+ I+ + P L L + L + ++ Sbjct: 196 VIVLVLVELGIGLVGRSVPQLNIFVFAQPVKSALALLMMVLFLPVV 241 >gi|312884593|ref|ZP_07744297.1| type III secretion protein SpaR/YscT/HrcT [Vibrio caribbenthicus ATCC BAA-2122] gi|309367905|gb|EFP95453.1| type III secretion protein SpaR/YscT/HrcT [Vibrio caribbenthicus ATCC BAA-2122] Length = 260 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 2/212 (0%) Query: 11 SLFLIVCRVGSCIMLLPGL-SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 +L L + R +++LP + +R + F++ +P + + + + Sbjct: 10 TLALCMMRPLGMMLMLPLFKGGAMGSGLIRNTLVLMFALPTIPLMHTQSADFSQMPMSGL 69 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + E+ +G + G + + G VI T G ++ T + L + Sbjct: 70 ILVYGEEVIIGLIVGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSVFGMFFT 129 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSP 188 I + V + + AL SY TIP L+F N+ S + Q + L + P Sbjct: 130 QILSVLFLVTGGFNALLSALYLSYSTIPPDSVLSFNNNLLSFISDQWQMMSDMCLSFALP 189 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 + I+ + ++GL+N+ V Q+ ++F+S P Sbjct: 190 AMVVMIMVDAALGLVNRSVEQLNVFFLSMPIK 221 >gi|46398250|gb|AAS91804.1| AscT [Aeromonas hydrophila] Length = 262 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 95/236 (40%), Gaps = 5/236 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + M++ L++ R SC ++LP L + +R + ++ P + DT L + Sbjct: 7 QAQMLAYTLLLPRFISCFVMLPVLGKQMLGGAMIRNGVVCSLALYAYPMIADT--LPPSI 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + LV E+ LG + G + + ++ +G +I G + + S +P Sbjct: 65 GAMELALLVAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMGSLFNPSLGSQTSPT 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIM 182 L+ + + + AL +SY + P+ S F ++ Sbjct: 125 GLLLTQTLITLFFASGAFLALLTALFQSYTSWPVAYFFPTIGSQWVSFFYGQFSQMLLLC 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 L++P L + + L+++ P + ++ ++ P + SL L + I++++ Sbjct: 185 TLLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAVASLLLVIYIKLMMDH 240 >gi|260778658|ref|ZP_05887550.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC BAA-450] gi|260604822|gb|EEX31117.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC BAA-450] Length = 256 Score = 98.2 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 92/233 (39%), Gaps = 2/233 (0%) Query: 12 LFLIVCRVGSCIMLLPGL-SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 L L + R +++LP + +R + F++ ++P + Sbjct: 7 LALCMMRPLGMMIMLPLFKGGAMGSGLIRNTLVLMFALPIIPMMQAHPVNFAAKPLTELI 66 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 + EL +G + G + + G VI T G ++ T + L + Sbjct: 67 FIYGEELLIGLIVGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSVFGMFFTQ 126 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSPF 189 I + V + + AL +SY +P L+F ++ S Q + L + P Sbjct: 127 ILGVLFLVSGGFNALLTALYQSYTVLPPESALSFNQDLLSFISQQWQMMSDMCLSFALPA 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + I+ ++++GL+N+ V Q+ ++F+S P L L +S+ + + + Sbjct: 187 MVVMIMVDVALGLVNRSVEQLNVFFLSMPIKSILVVFLLLVSMHFALSHYLNQ 239 >gi|167850353|ref|ZP_02475861.1| SctT [Burkholderia pseudomallei B7210] Length = 467 Score = 98.2 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|238793340|ref|ZP_04636966.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia intermedia ATCC 29909] gi|238727309|gb|EEQ18837.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia intermedia ATCC 29909] Length = 264 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 101/234 (43%), Gaps = 3/234 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L + + R +++LP ++ + +R A ++ + P L+ ++ L + Sbjct: 7 WLEALGVAMMRPYGMLLILPLFTVRSLGSSLLRNGLVFAIALPVTP-LFFSLPLITHDSL 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++ VEL +G + G + + + G +I T G + T S + + Sbjct: 66 IGWFGVLFVELLIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRL 185 L I + + + V AL SY +P+G + + F+ + L Sbjct: 126 LFTQILTVLFLLSGGFNLVLAALYGSYDILPVGSGIRPSSAMLHFLQSEWLLMQELCLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + P + ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ + Sbjct: 186 ALPAMLVMVLADLSLGLINRSAQQLNVFFLAMPIKSALALLLLLISLPYALHHY 239 >gi|290892878|ref|ZP_06555869.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Listeria monocytogenes FSL J2-071] gi|290557690|gb|EFD91213.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Listeria monocytogenes FSL J2-071] Length = 235 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 86/235 (36%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ ++ RV S + P L IP V++ F MA SI + +D+ Sbjct: 5 FFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISI----PVATGVDVSGITTLP 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G L+ + + + G +I +G + + S + ++ Sbjct: 61 DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + Y L+KS+ L + L + ++ Sbjct: 121 LDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I G L ++ I+ F + Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235 >gi|238764054|ref|ZP_04625009.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia kristensenii ATCC 33638] gi|238697725|gb|EEP90487.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia kristensenii ATCC 33638] Length = 260 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 3/234 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L + R +++LP + + +R A ++ + P + T L Sbjct: 7 WLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNSVVFAIALPVTPLFFATTLLHQGNLS 66 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ L + EL +G + G + + + G +I T G + T S + + Sbjct: 67 GWFWLLCI-ELIIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRL 185 L I + + + V AL SY +P G + + F+ + + + L Sbjct: 126 LFTQILTVLFLISGGFNLVLLALYGSYDILPAGSGIQPTSAMLQFLQSEWRLMYELCLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + P + ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ + Sbjct: 186 ALPAMLVMVLADLSLGLINRSSQQLNVFFLAMPIKSALALLLLLISLPYALHHY 239 >gi|27550055|gb|AAO18038.1| LscT [Photorhabdus luminescens] Length = 262 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 96/236 (40%), Gaps = 5/236 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + M++ L++ R+ SC ++ P LS + +R A + ++ P + + + Sbjct: 7 QQQMLAYTLLLPRIMSCFVIFPVLSKQMLGGGLIRNGVACSLALYAYPTVAG--NPLPTL 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + L+ E+ LG + G + + ++ TG +I G + + + S +P Sbjct: 65 GSLELTLLLGKEVLLGLLIGFIASIPFWAMEATGFIIDNQRGATMASVLNPSLGSQTSPT 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIM 182 L+ + + + AL +SY + P+ Q F + Sbjct: 125 GLLLTQTLITLFFSGGAFLSLLGALFQSYNSWPVTQFFPQITNQWLHFFYGQFSYLLQLC 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 +++P L + + L+++ P + ++ ++ P + SL L + I+++++ Sbjct: 185 ALMAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYIQLLMHH 240 >gi|85059285|ref|YP_454987.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|84779805|dbj|BAE74582.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 256 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 1/199 (0%) Query: 45 AFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTA 104 +++P L + + V EL +G + G + + G +I T Sbjct: 42 VLLALIIPMLPLVYKQAAPLRGWGLLERVPGELLIGVILGFCAAIPFWAVDMAGFLIDTL 101 Query: 105 IGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF 164 G + + S ++ + L ++ + + AL SY P G L Sbjct: 102 RGATMGSVYNPSMAMQTSLFGLLFSQFLCALFFLGGGINLLLSALYDSYRAFPPGTTLAL 161 Query: 165 G-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223 +F + Q + + L S P + I+ ++++GL+N+ Q+ ++F+S P L Sbjct: 162 DRRLFDFILTQWQLLYCLCLSFSLPAVLSMILADLALGLINRSARQLNVFFLSMPIKSAL 221 Query: 224 GSLFLCLSIEIIVYQFSHS 242 L L +S+ + + Sbjct: 222 ALLLLLVSLPYAFHHYLQE 240 >gi|253988527|ref|YP_003039883.1| type III secretion component protein sctt [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637891|emb|CAR66520.1| type iii secretion component protein sctt [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779977|emb|CAQ83138.1| type iii secretion component protein sctt [Photorhabdus asymbiotica] Length = 262 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 96/235 (40%), Gaps = 5/235 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + +++ L++ R+ SC ++ P LS + +R A + ++ P + + + Sbjct: 7 QQHILAYTLLLPRIMSCFVIFPVLSKQMLGGGMIRNGVACSLALYAYPTVAN--NPLPTF 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 L+ E+ LG + G + + ++ TG ++ G + + + S +P Sbjct: 65 GSLELMLLLGKEVLLGLLIGFIASIPFWAMEATGFIVDNQRGATMASVLNPSLGSQTSPT 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIM 182 L+ + + + AL +SY + P+ Q S F + Sbjct: 125 GLLLTQTLITLFFSGGAFLSLLGALFQSYNSWPVTQFFPTITNQWISFFYGQFSYLLQLC 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 +++P L + + L+++ P + ++ ++ P + SL L + I+++++ Sbjct: 185 ALMAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYIQLLMH 239 >gi|284007396|emb|CBA72803.1| type III secretion apparatus protein SpaR,YscT,HrcT [Arsenophonus nasoniae] Length = 256 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + L +I R+ ++P LS + + ++ ++ ++ + P+ + + Sbjct: 14 FLSHLVIIASRIFPIFSIIPFLSNNILSPTIKFPLSLFIAMGVWPYDAYELP---QLESM 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y +++ E+ +G + L I + LQ TG++I G L +S+ + + + L + Sbjct: 71 GYLVILLKEVIIGLMIALFISLPFCVLQITGNIIDNQRGATLSSSIDPINGVDTSELANF 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + D SY S+ + + + L+S Sbjct: 131 FNLFAVTLFLANDGVITTLEIYHHSYRLWLP--FSMKFPSISNILTFISYAISKAVMLAS 188 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 P + ++V I +GLL + PQ+ + I+ + L + Sbjct: 189 PLIIIFLVTEIMLGLLGRYAPQLNPFSIALTVKSLICFTILMI 231 >gi|294140999|ref|YP_003556977.1| type III secretion system apparatus protein, SpaR/YscT family [Shewanella violacea DSS12] gi|293327468|dbj|BAJ02199.1| type III secretion system apparatus protein, SpaR/YscT family [Shewanella violacea DSS12] Length = 229 Score = 96.7 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 84/205 (40%), Gaps = 1/205 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R + F++ L + D ++ + L E+ +G + G + + Sbjct: 6 IRNSLVLLFALPTLHAMADMQEVILQADILGVVNLYGKEILVGFLLGFCAAIPFWAIDMA 65 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G VI T G ++ T + L + L + + V + + A+ +SY +P Sbjct: 66 GFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNHLLTAMYQSYNELP 125 Query: 158 IGQELN-FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G ELN + + F + L + P + I+ ++++GL+N+ Q+ ++F+S Sbjct: 126 PGFELNLSQQLLTFFNQEWLLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLS 185 Query: 217 TPYLIGLGSLFLCLSIEIIVYQFSH 241 P L L L S++ + + Sbjct: 186 MPIKSALVLLLLIYSLQFALSHYLE 210 >gi|37527635|ref|NP_930979.1| Type III secretion component protein SctT [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787070|emb|CAE16145.1| Type III secretion component protein SctT [Photorhabdus luminescens subsp. laumondii TTO1] Length = 262 Score = 96.7 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 97/236 (41%), Gaps = 5/236 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + +++ L++ R+ SC ++ P LS + +R A + ++ P + + + Sbjct: 7 QQQILAYTLLLPRIMSCFVIFPVLSKQMLGGGLIRNGVACSLALYAYPTVAGSQ--LPTL 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + L+ E+ LG + G + + ++ TG +I G + + + + +P Sbjct: 65 SSLELTLLLGKEVLLGLLIGFIASIPFWAMEATGFIIDNQRGATMASVLNPALGSQTSPT 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIM 182 L+ + + + AL +SY + P+ Q F + Sbjct: 125 GLLLTQTLITLFFSGGAFLSLLGALFQSYNSWPVTQFFPKITNQWLHFFYGQFSYLLQLC 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 +++P L + + L+++ P + ++ ++ P + SL L + I+++++ Sbjct: 185 ALMAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYIQLLMHH 240 >gi|238759388|ref|ZP_04620553.1| hypothetical protein yaldo0001_4800 [Yersinia aldovae ATCC 35236] gi|238702415|gb|EEP94967.1| hypothetical protein yaldo0001_4800 [Yersinia aldovae ATCC 35236] Length = 265 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 89/226 (39%), Gaps = 5/226 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + +M L L R+ LP LS + ++ C A+ ++ L PF + Sbjct: 17 QTGLMKLALAWVRIAPVFFFLPFLSSKLLNSGMIKNCVAIFLALGLWPFFSAR---EINW 73 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 ++++ EL +G V ++ + L G +I G + ++ ++ + + + Sbjct: 74 EETSLGEIIIYELAIGLVLAFILSLPFLIANIIGELIDNQRGATISDTIDPANGVESSEM 133 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + L+ I ++ +Q+ L +SY +P + L + + Sbjct: 134 SVLVSHIVVMIFLAQGGMYQLAQTLAESYRLLPFAGGFTHFDSLP-LGRWLNQLVVQGII 192 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L++P L + +++GL ++ PQ+ + +S + + L Sbjct: 193 LAAPILVTLFITEVALGLYSRFCPQLNAFSLSLTIKSAVAFMVFLL 238 >gi|332163588|ref|YP_004424930.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318608195|emb|CBY78169.1| type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] gi|325667818|gb|ADZ44461.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 261 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 86/227 (37%), Gaps = 5/227 (2%) Query: 21 SCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +C ++LP LS + + +R + ++ + P + + ++ V+ L+ E L Sbjct: 22 ACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIE--VDAFTLMLLIGKEFIL 79 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G + + L+ G ++ G + + + +P L+ + + Sbjct: 80 GLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFCG 139 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + AL SY P+ F N +I L++P L + Sbjct: 140 GAFLSLLSALFHSYVNWPVASFFPEVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAE 199 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + L+++ P + ++ ++ P + SL L + ++ S + L Sbjct: 200 FGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAML 246 >gi|119385354|ref|YP_916410.1| flagellar biosynthetic protein FliR [Paracoccus denitrificans PD1222] gi|119375121|gb|ABL70714.1| flagellar biosynthetic protein FliR [Paracoccus denitrificans PD1222] Length = 252 Score = 96.3 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 107/226 (47%), Gaps = 5/226 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 CRV +C ++LP S +P++VR MA + +L + + + L E Sbjct: 22 CRVQACFLMLPVFSERAMPVRVRAALVMAVTPLLA---EHAQSVGGIDGLLHLAALAGAE 78 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + G V G L+R++ + L + I+ L+ +G ++ + P+ +L+ + GL L Sbjct: 79 ILSGLVLGGLVRLFAVALNIAATAIAATASLS--QLIGAANEYSPHPIGNLMHLAGLAVL 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 + F L +S P+G S V++++ +F++ + L++PF+ +F Sbjct: 137 MALGFPVLACDLLRESLVLRPLGDWPQVSEALPSAVSLVRQSFVLAMLLAAPFILGGFLF 196 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + G+++K++P +P+ FI P I L L L + I+ + + Sbjct: 197 QVLSGMISKVMPTLPVIFIGAPGAILLALLALVMLAPSILSVWVDA 242 >gi|28373023|ref|NP_783681.1| YscT [Yersinia enterocolitica] gi|32470294|ref|NP_863529.1| YscT [Yersinia enterocolitica] gi|122815818|ref|YP_001004084.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579352|gb|AAK69229.1|AF336309_24 YscT [Yersinia enterocolitica] gi|23630595|gb|AAN37551.1| YscT [Yersinia enterocolitica] gi|121663692|emb|CAL10054.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923237|emb|CBW54703.1| YscT, T3SS component [Yersinia enterocolitica (type O:8)] Length = 261 Score = 95.9 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 21 SCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +C ++LP LS + + +R + ++ + P + + ++ V+ L+ E L Sbjct: 22 ACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIE--VDAFTLMLLIGKEFIL 79 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G + + L+ G ++ G + + + +P L+ + + Sbjct: 80 GLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFSG 139 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + AL SY P+ F N +I L++P L + Sbjct: 140 GAFLSLLSALFHSYVNWPVASFFPEVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAE 199 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 + L+++ P + ++ ++ P + SL L + ++ Sbjct: 200 FGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSH 240 >gi|154249643|ref|YP_001410468.1| type III secretion system inner membrane R protein [Fervidobacterium nodosum Rt17-B1] gi|154153579|gb|ABS60811.1| type III secretion system inner membrane R protein [Fervidobacterium nodosum Rt17-B1] Length = 255 Score = 95.9 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 103/237 (43%), Gaps = 4/237 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + +S LI+ R+ +++ + +P+++ + +A S V LP + + + ++ Sbjct: 8 QRYALSWGLILTRLTGMMVIALMFAGFSLPLEIMVVLLLALSYVTLPMVNIMVPITLPIS 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 S L F+G V GL+ + + G N+ S+ + + + Sbjct: 68 TLVISLLF--NFFIGFVIGLMAYTIVGAVYIGSEIFGIQSGFNVSGSLDPTMEES-PITS 124 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLR 184 + +I + + H ++ ++VKS P+ ++ F I S + + F+ L+ Sbjct: 125 EFVYLISVYVFVSLKGHLIIYSSVVKSIEKFPLVITDIPFKEINSQYFELFMDAFIFSLQ 184 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 ++ P + + N+ G+L++LVPQ+ ++ ++ P + L L I + + + Sbjct: 185 IALPLIGLMFLINVLFGILSRLVPQMNVFMVAMPASTMIMFLLLVTMIPVWIEMITR 241 >gi|16082734|ref|NP_395180.1| needle complex export protein [Yersinia pestis CO92] gi|31795275|ref|NP_857736.1| needle complex export protein [Yersinia pestis KIM] gi|31795477|ref|NP_857931.1| needle complex export protein [Yersinia pestis KIM] gi|45478538|ref|NP_995365.1| putative type III secretion protein YscT [Yersinia pestis biovar Microtus str. 91001] gi|51593915|ref|YP_068482.1| yscT; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108793658|ref|YP_636808.1| type III secretion protein [Yersinia pestis Antiqua] gi|145597136|ref|YP_001154600.1| type III secretion protein [Yersinia pestis Pestoides F] gi|149192693|ref|YP_001293925.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|162417741|ref|YP_001604478.1| type III secretion apparatus protein YscT [Yersinia pestis Angola] gi|165927786|ref|ZP_02223618.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. F1991016] gi|165940084|ref|ZP_02228618.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. IP275] gi|166011765|ref|ZP_02232663.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Antiqua str. E1979001] gi|166214462|ref|ZP_02240497.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Antiqua str. B42003004] gi|167401935|ref|ZP_02307421.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422390|ref|ZP_02314143.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422473|ref|ZP_02314226.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422880|ref|ZP_02314633.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426861|ref|ZP_02318614.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897580|ref|YP_001874691.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis PB1/+] gi|229896862|ref|ZP_04512022.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|229900217|ref|ZP_04515353.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491103|ref|ZP_06208175.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis KIM D27] gi|294496840|ref|YP_003560537.1| needle complex export protein [Yersinia pestis Z176003] gi|322836572|ref|YP_004210068.1| type III secretion apparatus protein YscT [Yersinia pestis Java 9] gi|57015238|sp|P69984|YSCT_YERPE RecName: Full=Yop proteins translocation protein T gi|57015239|sp|P69985|YSCT_YERPS RecName: Full=Yop proteins translocation protein T gi|475125|gb|AAA27680.1| yscT [Yersinia pseudotuberculosis] gi|2996235|gb|AAC62558.1| Yop proteins translocation protein T homolog [Yersinia pestis KIM 10] gi|3822065|gb|AAC69785.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832466|emb|CAB54923.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357160|gb|AAS58556.1| putative type III secretion protein YscT [Yersinia pestis biovar Microtus str. 91001] gi|51591612|emb|CAF25416.1| yscT; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108782205|gb|ABG16260.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212904|gb|ABP42310.1| type III secretion protein [Yersinia pestis Pestoides F] gi|148872351|gb|ABR14841.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|162354761|gb|ABX88708.1| type III secretion apparatus protein YscT [Yersinia pestis Angola] gi|165911994|gb|EDR30637.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. IP275] gi|165920222|gb|EDR37523.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. F1991016] gi|165989372|gb|EDR41673.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Antiqua str. E1979001] gi|166204355|gb|EDR48835.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Antiqua str. B42003004] gi|166958170|gb|EDR55191.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958627|gb|EDR55648.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958710|gb|EDR55731.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048663|gb|EDR60071.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054160|gb|EDR63987.1| type III secretion apparatus protein YscT [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700606|gb|ACC91234.1| type III secretion protein SpaR/YscT/HrcT [Yersinia pseudotuberculosis PB1/+] gi|229686737|gb|EEO78817.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700133|gb|EEO88172.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|262363851|gb|ACY60571.1| needle complex export protein [Yersinia pestis D106004] gi|262364008|gb|ACY64345.1| needle complex export protein [Yersinia pestis D182038] gi|270334846|gb|EFA45625.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia pestis KIM D27] gi|294352428|gb|ADE66485.1| needle complex export protein [Yersinia pestis Z176003] gi|317374478|gb|ADV16653.1| type III secretion inner membrane protein [Yersinia pestis] gi|321161346|gb|ADW67052.1| type III secretion apparatus protein YscT [Yersinia pestis Java 9] Length = 261 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 5/227 (2%) Query: 21 SCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +C ++LP LS + + +R + ++ + P + + ++ V+ L+ E+ L Sbjct: 22 ACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIE--VDAFTLMLLIGKEIIL 79 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G + + L+ G ++ G + + + +P L+ + + Sbjct: 80 GLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFSG 139 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + AL SY P+ F N +I L++P L + Sbjct: 140 GAFLSLLSALFHSYVNWPVASFFPAVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAE 199 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + L+++ P + ++ ++ P + SL L + ++ S + L Sbjct: 200 FGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAML 246 >gi|10955566|ref|NP_052407.1| YscT [Yersinia enterocolitica] gi|4324353|gb|AAD16830.1| YscT [Yersinia enterocolitica W22703] Length = 261 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 5/227 (2%) Query: 21 SCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +C ++LP LS + + +R + ++ + P + + ++ V+ L+ E L Sbjct: 22 ACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIE--VDAFTLMLLIGKEFIL 79 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G + + L+ G ++ G + + + +P L+ + ++ Sbjct: 80 GLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTRITIIFCG 139 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + AL SY P+ F N +I L++P L + Sbjct: 140 GAFLSLLSALFHSYVNWPVASFFPEVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAE 199 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + L+++ P + ++ ++ P + SL L + ++ S + L Sbjct: 200 FGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAML 246 >gi|326315339|ref|YP_004233011.1| type III secretion protein SpaR/YscT/HrcT [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372175|gb|ADX44444.1| type III secretion protein SpaR/YscT/HrcT [Acidovorax avenae subsp. avenae ATCC 19860] Length = 302 Score = 95.5 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 4/234 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L L R + +++LP + + +VR + + L + + Sbjct: 25 LALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVAW--GQPSGLLESTSPLVFIA 82 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G + G + V + G +I G N TP+ +L+ + Sbjct: 83 LVVKEALIGMLIGFAVSVVFWAAEGIGMLIDNQAGYNNIQQTNPLSGQQSTPVGNLLMQL 142 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPF 189 ++ +++ L SY P+ + + + F + + +L+++ P Sbjct: 143 AIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLKIAGPV 202 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L ++ ++ +GLL+K ++ ++ P L L L + + +Q Sbjct: 203 LMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 256 >gi|254488003|ref|ZP_05101208.1| flagellar biosynthetic protein FliR [Roseobacter sp. GAI101] gi|214044872|gb|EEB85510.1| flagellar biosynthetic protein FliR [Roseobacter sp. GAI101] Length = 162 Score = 95.1 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 71/153 (46%), Gaps = 2/153 (1%) Query: 92 LGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVK 151 + LQ TGS+ + + L+ +G + + ++ L H + L+ Sbjct: 1 MALQTTGSIAAQSTSLS--QILGGAAVEPIPAMGYILVFAALALAVTAGLHVKAASLLIY 58 Query: 152 SYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIP 211 SY T+P+GQ N ++ + + L++PF+ +++N+++G +NK +PQ+ Sbjct: 59 SYDTLPMGQFPNPSDLSEWGLAQTSHAMSLAFTLAAPFVILSLLYNLALGAINKAMPQLM 118 Query: 212 IYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + F+ P + G LC++ +++ + + Sbjct: 119 VAFVGAPVITAGGLFILCIASPLLLGTWLSALD 151 >gi|123443725|ref|YP_001007696.1| putative type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|8996031|gb|AAF82330.1|AF005744_9 YsaT [Yersinia enterocolitica] gi|15088604|gb|AAK84115.1|AF369954_13 YsaT [Yersinia enterocolitica] gi|122090686|emb|CAL13562.1| putative type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 266 Score = 94.7 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 90/226 (39%), Gaps = 5/226 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + +M+L L R+ LP LS + ++ C A+ ++ + PF + Sbjct: 17 QTGLMTLALAWARIAPVFFFLPFLSSKLLNSGMIKNCVAVFLALGMWPFFSTY---ELNW 73 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 ++++ EL +G V ++ + L G +I G + ++ ++ + + + Sbjct: 74 EETSLGEMILYELAIGLVLAFILSLPFLIANIIGELIDNQRGATISDTIDPANGVESSEM 133 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + L+ I ++ +Q+ +SY +P + + L + + Sbjct: 134 SVLVSHIVVMIFLTQGGMYQLAQTFAESYRLLPFAAGFSHFDSLP-LGRWLNQLVVQAIV 192 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L++P L + +++GL ++ PQ+ + +S + + L Sbjct: 193 LAAPILVTLFITEVALGLYSRFCPQLNAFSLSLTIKSAIAFMVFLL 238 >gi|33593238|ref|NP_880882.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603236|emb|CAC79581.1| bscT [Bordetella pertussis Tohama I] gi|33563613|emb|CAE42514.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382647|gb|AEE67494.1| putative type III secretion protein [Bordetella pertussis CS] Length = 266 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 3/221 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + ++ LP + ++P +R ++++P L + ++ L+ E Sbjct: 23 RILTAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQYAALD-IDWPRLLALLAKEA 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G L + + G VI G +L + + +P+ L + ++ Sbjct: 82 MVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAILNPATGNDSSPMGILFNLGFMVFFL 141 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 L S+G I ++ +L L+SP + + Sbjct: 142 TAGGFGLFATMLYDSFGLWNIWAWWPSMPAQGAVRMLDQFSGFAARVLLLASPAIVAMFL 201 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + + L+++ PQ+ ++F++ P L L L + + Sbjct: 202 AELGLALISRFAPQLQVFFLALPVKSALVLFVLVLYMATLF 242 >gi|160875392|ref|YP_001554708.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica OS195] gi|160860914|gb|ABX49448.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica OS195] gi|315267592|gb|ADT94445.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica OS678] Length = 266 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R + F++ + + + + + L E+ +G + G + + Sbjct: 43 IRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEIIVGMLLGFCAAIPFWAIDMA 102 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G VI T G ++ T + L + L + + V + + AL +SY +P Sbjct: 103 GFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTALYQSYQQLP 162 Query: 158 IGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G L + + Q + L + P + I+ ++++GL+N+ Q+ ++F+S Sbjct: 163 PGFNLTLSQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLS 222 Query: 217 TPYLIGLGSLFLCLSIEIIVYQFSH 241 P L L L S++ + + Sbjct: 223 MPIKSALVLLLLIYSLQFALSHYLQ 247 >gi|320538196|ref|ZP_08038091.1| flagellar biosynthetic protein FliR [Treponema phagedenis F0421] gi|320145013|gb|EFW36734.1| flagellar biosynthetic protein FliR [Treponema phagedenis F0421] Length = 265 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 3/238 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L+ R+ IM P LS V++ A + ++ P +Q + Y Sbjct: 15 FLLVAVRIFGMIMTTPLLSTRAFSRVVKVALAGLLAFLIFPLAVYPESIQTEIGSHYILL 74 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L+ L + G I + + G S +G + + + I Sbjct: 75 LIGEGLLG-VLTGFFINMIFVSFSTAGQFFSYQMGFGASEVYDALAQIENPLMGQFLNFI 133 Query: 132 GLLALWVI-DFHHQVFYALVKSYGTIPIGQELNFGNIFS-SFVNMLQTTFMIMLRLSSPF 189 +L + F +++++ TI L I F+ +L F+ + +++P Sbjct: 134 AVLTFLQVKGFQTLFLGGVLRNFQTINCFIFLEKQAILIPFFMQILGKLFLTAMIIAAPI 193 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + ++S+GLL K PQ+ + P I + L +++ ++ F GF Sbjct: 194 MGTLFLIHVSMGLLTKATPQMNLLSEGFPITIMVTFFLLSVALPDMINLFIVILQQGF 251 >gi|315929207|gb|EFV08428.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp. jejuni 305] Length = 176 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 71/167 (42%) Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + GL++++ + G I+ +G + + + S + ++ ++ L+ D Sbjct: 1 MIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFD 60 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 HH + L S G I +G N+ + F+I +S P L ++ ++ Sbjct: 61 GHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIF 120 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 GLL K +PQ + I P I LG + L + +++ F + L F Sbjct: 121 GLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 167 >gi|312602775|ref|YP_004022620.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica HKI 454] gi|306431578|emb|CBK52130.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica HKI 454] gi|312170089|emb|CBW77101.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica HKI 454] Length = 270 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 4/240 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + L L R + P + + R + FS + L ++ Sbjct: 19 LAMLTLCSERAFILFFMFPPTADGVLQGVARNGVVLLFSSFIA--YGQPASLFESMSGLM 76 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + + + E +G G + + G+ I G N S TP +L+ Sbjct: 77 FVETFVREAIIGLALGFSASIVFWVAESAGTYIDDLTGYNNIQITNPVRSEQNTPTGTLL 136 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFV-NMLQTTFMIMLRLS 186 I +A W + + L SY P+ + NI SFV + T + +L+ Sbjct: 137 MQIATVAFWTLGGMPALLGVLYDSYNWWPLTSRTPVAENILQSFVLHQTDTLMQMTAKLA 196 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 +P +F ++ +++ G + K ++ + +S P L L L L + I V Q + Sbjct: 197 TPIMFILLLVDLAFGFVAKSAQKLEVMQLSQPVKGALTVLILALFVGIFVEQVRGQLVLA 256 >gi|284007637|emb|CBA73292.1| type III secretion inner membrane protein YscT,HrcT,SpaR,EscT,EpaR1 [Arsenophonus nasoniae] Length = 256 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 78/203 (38%), Gaps = 1/203 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R + F++ + P + L EL +G V G + + Sbjct: 34 IRNSLVLVFALPIAPIIKTMPIDFTHQTVIELVFLYSEELLIGLVLGFCAAIPFWAIDMA 93 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G +I T G ++ T + L + L I + V + + AL SY +P Sbjct: 94 GFIIDTLRGASMSTILNPLMGLQSSIFGMLFTQILSVLFLVSGGFNALLTALYHSYNVLP 153 Query: 158 IGQELNFGNIFSSFVNMLQTTFM-IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 L+F F+ + + + + P + I+ ++++GL+N+ V Q+ ++F+S Sbjct: 154 PNAPLSFNASLLLFIQQQWHMMLELCMSFAMPAMVVMILVDVALGLINRSVEQLNVFFLS 213 Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239 P L L +S+ + Sbjct: 214 MPIKSVLVVFLLLVSMYFAFNHY 236 >gi|193061932|ref|ZP_03043028.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E22] gi|194426275|ref|ZP_03058830.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B171] gi|260845710|ref|YP_003223488.1| T3SS structure protein EscT [Escherichia coli O103:H2 str. 12009] gi|260858249|ref|YP_003232140.1| T3SS structure protein EscT [Escherichia coli O26:H11 str. 11368] gi|13447703|gb|AAK26702.1|AF200363_10 EscT [Escherichia coli] gi|18034507|gb|AAL57529.1|AF453441_13 EscT [Escherichia coli] gi|17384637|emb|CAC81849.1| EscT protein [Escherichia coli] gi|57434470|emb|CAI43887.1| EscT protein [Escherichia coli] gi|192932152|gb|EDV84750.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E22] gi|194415583|gb|EDX31850.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B171] gi|195183211|dbj|BAG66756.1| T3SS structure protein EscT [Escherichia coli O111:H-] gi|254692327|emb|CAR47968.1| EscT protein [Escherichia coli] gi|254692395|emb|CAR48038.1| EscT protein [Escherichia coli] gi|257756898|dbj|BAI28400.1| T3SS structure protein EscT [Escherichia coli O26:H11 str. 11368] gi|257760857|dbj|BAI32354.1| T3SS structure protein EscT [Escherichia coli O103:H2 str. 12009] gi|323155906|gb|EFZ42073.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli EPECa14] gi|323163022|gb|EFZ48855.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E128010] Length = 258 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++S F + R ++LP S + +R +AF++ ++ T + Sbjct: 7 VIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPII-VENYTFSEKLPSGI 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ E+ +G GL + + G +I T G + + S S + + Sbjct: 66 FQLTGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLRL 185 ++ + + V L SY +P+ ++ F F+ L +F+ +ML Sbjct: 126 ILYQFITVIFVIHGGIQSVLDKLYLSYEILPLQADIAFNRALVDFLFSLWDSFIKLMLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 S P + + ++ G LNK PQ+ ++ +S P + L L I + + Sbjct: 186 SIPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240 >gi|220917692|ref|YP_002492996.1| type III secretion system inner membrane R protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955546|gb|ACL65930.1| type III secretion system inner membrane R protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 250 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 79/225 (35%), Gaps = 1/225 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 P L++ R + P L +P +VRL A+A + + + + Sbjct: 4 PLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVH-AGAGSPAVPPPP 62 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 A + + E G + GL R G ++ + GL + + + Sbjct: 63 GLAALAGAALAETATGLLAGLAARWTLDAALAAGHLVGLSAGLGYSALVDPITGAESSAV 122 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + + ++ + H + LV++ P G + + S V + + +R Sbjct: 123 SQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAPDLAELASRAVGQAALSVALAVR 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 L+ P + ++ ++ + + ++ PQ+ + + L L Sbjct: 183 LAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALY 227 >gi|120609158|ref|YP_968836.1| type III secretion protein SpaR/YscT/HrcT [Acidovorax citrulli AAC00-1] gi|120587622|gb|ABM31062.1| type III secretion protein SpaR/YscT/HrcT [Acidovorax citrulli AAC00-1] gi|255047058|gb|AAW81016.2| HrcT [Acidovorax citrulli] Length = 284 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 4/234 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L L R + +++LP + + +VR + + L + + Sbjct: 5 LALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVAW--GQPSGLLESTSPLVFIA 62 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G + G + V + G +I G N TP+ +L+ + Sbjct: 63 LVVKEALIGMLIGFAVSVVFWAAEGVGMLIDNQAGYNNIQQTNPLSGQQSTPVGNLLMQL 122 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPF 189 ++ +++ L SY P+ + + + F + + +L+++ P Sbjct: 123 AIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLKIAGPV 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L ++ ++ +GLL+K ++ ++ P L L L + + +Q Sbjct: 183 LMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 236 >gi|33596845|ref|NP_884488.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33573546|emb|CAE37537.1| putative type III secretion protein [Bordetella parapertussis] Length = 266 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 74/205 (36%), Gaps = 3/205 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + ++ LP + ++P +R ++++P L + + L+ E Sbjct: 23 RILAAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQYAALD-IGWPRLLALLAKEA 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G L + + G VI G +L + +PL L + ++ Sbjct: 82 MVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAIPNPATGNDSSPLGILFNLGFMVFFL 141 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 L S+G I ++ +L L+SP + + Sbjct: 142 TAGGFGLFATMLYDSFGLWNIWAWWPSMPAQGAVRMLDQFSGFAARVLLLASPAIVAMFL 201 Query: 196 FNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ PQ+ ++F++ P Sbjct: 202 AELGLALISRFAPQLQVFFLALPVK 226 >gi|126174200|ref|YP_001050349.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica OS155] gi|125997405|gb|ABN61480.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica OS155] Length = 266 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R + F++ + + + + + L E+ +G + G + + Sbjct: 43 IRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEMIVGVLLGFCAAIPFWAIDMA 102 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G VI T G ++ T + L + L + + V + + AL +SY +P Sbjct: 103 GFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTALYQSYQQLP 162 Query: 158 IGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G L + + Q + L + P + I+ ++++GL+N+ Q+ ++F+S Sbjct: 163 PGFNLTLAQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLS 222 Query: 217 TPYLIGLGSLFLCLSIEIIVYQFSH 241 P L L L S++ + + Sbjct: 223 MPIKSALVLLLLIYSLQFALSHYLQ 247 >gi|15723909|gb|AAL06356.1|AF311901_8 EscT [Citrobacter rodentium] Length = 258 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 91/235 (38%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++S F + R ++LP S + +R +AF++ ++ Sbjct: 7 VIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMVAFTLPII-VENYKFSEGLPSGI 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +V+ E+ +G GL + + G +I T G + + S S + + Sbjct: 66 FQLIAIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLRL 185 ++ + + V L SY +P+ + F + F+ L +F+ +ML Sbjct: 126 ILYQFVTVIFVIHGGIQSVLDKLYLSYEMLPLQSGITFNHTLVDFLFSLWDSFIKLMLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 S P + + ++ G LNK PQ+ ++ +S P + L L I I + Sbjct: 186 SVPMVVGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAVFILLLVIHIFPEFIT 240 >gi|33600619|ref|NP_888179.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568218|emb|CAE32131.1| putative type III secretion protein [Bordetella bronchiseptica RB50] Length = 266 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 75/205 (36%), Gaps = 3/205 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + ++ LP + ++P +R ++++P L + + L+ E Sbjct: 23 RILAAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQYAALD-IGWPRLLALLAKEA 81 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G L + + G VI G +L + + +PL L + ++ Sbjct: 82 MVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAILNPATGNDSSPLGILFNLGFMVFFL 141 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 L S+G I ++ +L L+SP + + Sbjct: 142 TAGGFGLFATMLYDSFGLWDIWAWWPSMPAQGAVRMLDQFSGFAARVLLLASPAIVAMFL 201 Query: 196 FNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ PQ+ ++F++ P Sbjct: 202 AELGLALISRFAPQLQVFFLALPVK 226 >gi|298382087|ref|ZP_06991684.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|298277227|gb|EFI18743.1| conserved hypothetical protein [Escherichia coli FVEC1302] Length = 242 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 5/222 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + CR+ LLP + IP VR + S L+ + N ++ A ++ Sbjct: 6 VFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDVALFA---A 62 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ +G L+ GS I G L +++ + + + L L + Sbjct: 63 REIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARLFNLFSAA 122 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + L +SY P G + + + +SP + + Sbjct: 123 VYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYASPVIAVML 180 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +GLL + Q+ + IS L L L + I+ Sbjct: 181 GGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 222 >gi|299822254|ref|ZP_07054140.1| flagellar biosynthetic protein FliR [Listeria grayi DSM 20601] gi|299815783|gb|EFI83021.1| flagellar biosynthetic protein FliR [Listeria grayi DSM 20601] Length = 253 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 4/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ + R+ S I P L + IP V++ F +A S + + + N Sbjct: 5 FLLATVIAFSRIASFIYFFPLLKSTAIPNSVKVIFGLALSF----PVAGMVKVGNIHTLT 60 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 V E+ G LI + L + G +I +G + + S + ++ Sbjct: 61 DLLIRVSAEVVFGLALAKLIEMIALVPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI 120 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + ++ + + + L+KS+ Q L + L + L+ Sbjct: 121 LDTFFVIVFLSLQGLDYLMFYLLKSFQFTASIQILFEQGFIRLLIATLAFALTSAVSLAL 180 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 P + + NI + ++K PQI I+ + I LG L ++ +I F H Sbjct: 181 PIMGSIFIVNIILAFISKSAPQINIFMNAFMVKITLGIFILACAVPVISTVFRHL 235 >gi|304408583|ref|ZP_07390204.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica OS183] gi|307305411|ref|ZP_07585159.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica BA175] gi|304352404|gb|EFM16801.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica OS183] gi|306911714|gb|EFN42139.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica BA175] Length = 266 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%) Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97 +R + F++ + + + + + L E+ +G + G + + Sbjct: 43 IRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEMIVGVLLGFCAAIPFWAIDMA 102 Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 G VI T G ++ T + L + L + + V + + AL +SY +P Sbjct: 103 GFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTALYQSYQQLP 162 Query: 158 IGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216 G L + + Q + L + P + I+ ++++GL+N+ Q+ ++F+S Sbjct: 163 PGFNLTLAQPLMMFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLS 222 Query: 217 TPYLIGLGSLFLCLSIEIIVYQFSH 241 P L L L S++ + + Sbjct: 223 MPIKSALVLLLLIYSLQFALSHYLQ 247 >gi|218696458|ref|YP_002404125.1| putative Type III secretion protein EpaR [Escherichia coli 55989] gi|300906601|ref|ZP_07124292.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 84-1] gi|301303007|ref|ZP_07209134.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 124-1] gi|218353190|emb|CAU99082.1| putative Type III secretion protein EpaR [Escherichia coli 55989] gi|300401640|gb|EFJ85178.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 84-1] gi|300841671|gb|EFK69431.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 124-1] gi|315256732|gb|EFU36700.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 85-1] gi|323183413|gb|EFZ68810.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli 1357] Length = 255 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALFQHYHYELSTLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLSSPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 235 >gi|167840295|ref|ZP_02466979.1| type III secretion inner membrane protein SctT, putative [Burkholderia thailandensis MSMB43] Length = 294 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 85/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVIMSILPATADTVMKGPMRSGAAAVWCLFIA---CGQQALIPQLHGAFLVIACLKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYVDDVAGFNNVQMQNPSSGTQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + ALV+SY P+G + +F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALVESYAWWPLGSFDPVPAPLLEAFAQARIDMLMNMIARIATPMMAMLVL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + + P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVGQPLKGAIAVLIVAVLAGNFVTEM 249 >gi|107101123|ref|ZP_01365041.1| hypothetical protein PaerPA_01002155 [Pseudomonas aeruginosa PACS2] Length = 262 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 81/206 (39%), Gaps = 5/206 (2%) Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ SC ++LP L+ + VR A + ++ P + + L ++ + L+ E Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGS--LPPALDALDIALLIGKE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + LG + G + + ++ TG +I G L +++ S +P L+ + Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTLNPSLGSQTSPTGLLLTQTLITLF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + +L +SY + P+ F M+ ++P L Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQFGSQWVEFFYAQFSQMLMLCALFAAPLLIAMF 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ P + ++ ++ P Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIK 222 >gi|315617515|gb|EFU98121.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli 3431] Length = 258 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++S F + R ++LP S + +R +AF++ ++ T + Sbjct: 7 VIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMVAFTLPII-IENYTFSEKLPSGI 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ E+ +G GL + + G +I T G + + S S + + Sbjct: 66 FPLTGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLRL 185 ++ + + V L SY +P+ ++ F F+ L +F+ +ML Sbjct: 126 ILYQFITVIFVIQGGIQSVLEKLYLSYEILPLQADIIFNRALVDFLFSLWDSFIRLMLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 S P + + ++ G LNK PQ+ ++ +S P + L L I + + Sbjct: 186 SIPMVVGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFMLLLVIHVFPEFIT 240 >gi|170766697|ref|ZP_02901150.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia albertii TW07627] gi|170124135|gb|EDS93066.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia albertii TW07627] Length = 258 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++S F + R ++LP S + +R +AF++ ++ T + Sbjct: 7 VIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMVAFTLPII-IENYTFSEKLPSGI 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ E+ +G GL + + G +I T G + + S S + + Sbjct: 66 FPLTGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLRL 185 ++ + + V L SY +P+ ++ F F+ L +F+ +ML Sbjct: 126 ILYQFITVIFVIQGGIQSVLEKLYLSYEILPLQADIMFNRALVDFLFSLWDSFIRLMLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 S P + + ++ G LNK PQ+ ++ +S P + L L I + + Sbjct: 186 SIPMVIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFMLLLVIHVFPEFIT 240 >gi|254234790|ref|ZP_04928113.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|126166721|gb|EAZ52232.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] Length = 262 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 81/206 (39%), Gaps = 5/206 (2%) Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ SC ++LP L+ + VR A + ++ P + + L ++ + L+ E Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGS--LPPALDALDIALLIGKE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + LG + G + + ++ TG +I G L ++ S +P L+ + Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + +L +SY + P+ + F M+ ++P L Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ P + ++ ++ P Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIK 222 >gi|283786650|ref|YP_003366515.1| T3SS structural protein EscT [Citrobacter rodentium ICC168] gi|282950104|emb|CBG89739.1| T3SS structural protein EscT [Citrobacter rodentium ICC168] Length = 258 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 91/235 (38%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++S F + R ++LP S + +R +AF++ ++ Sbjct: 7 VIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMVAFTLPII-VENYKFSEGLPSGI 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 +V+ E+ +G GL + + G +I T G + + S S + + Sbjct: 66 FQLIAIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLRL 185 ++ + + V L SY +P+ + F + F+ L +F+ +ML Sbjct: 126 ILYQFVTVIFVIHGGIQSVLDKLYLSYEMLPLQSGITFNHTLVDFLFSLWDSFIKLMLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 S P + + ++ G LNK PQ+ ++ +S P + L L I I + Sbjct: 186 SVPMVIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAVFILLLVIHIFPEFIT 240 >gi|218892353|ref|YP_002441220.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] gi|254240036|ref|ZP_04933358.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|126193414|gb|EAZ57477.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|218772579|emb|CAW28362.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] Length = 262 Score = 92.4 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 81/206 (39%), Gaps = 5/206 (2%) Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ SC ++LP L+ + VR A + ++ P + + L ++ + L+ E Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGS--LPPALDALDIALLIGKE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + LG + G + + ++ TG +I G L ++ S +P L+ + Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + +L +SY + P+ + F M+ ++P L Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ P + ++ ++ P Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIK 222 >gi|170698143|ref|ZP_02889222.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria IOP40-10] gi|170136908|gb|EDT05157.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria IOP40-10] Length = 256 Score = 92.4 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 79/214 (36%), Gaps = 5/214 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 RV LLP LS + + + ++ LW + + + +++ E Sbjct: 24 ARVAPVFYLLPFLSDRTLANTLTKHIVIFMVVL---GLWPVMAHPHPADWGTLLMVLVQE 80 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + +G V G+ + + G +I G + S+ + + + + + ++ Sbjct: 81 VLIGLVLGVTLALPFWIATSVGELIDNQRGATISGSLDPATGVDASIFSPFVSLMYAALF 140 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196 + A+ SY + G L+ F +L + L L++P + Sbjct: 141 LQQGGMVVIVQAIADSYHHVATGAMLHGD--LWRFGRLLTDSVGKGLVLAAPVSIVMFLT 198 Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++ +GL ++ PQ+ + +S L + L L Sbjct: 199 DVMLGLFSRFCPQVNAFSLSLSIKSVLAFVVLHL 232 >gi|215488992|ref|YP_002331423.1| T3SS structure protein EscT [Escherichia coli O127:H6 str. E2348/69] gi|312967935|ref|ZP_07782147.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli 2362-75] gi|2865278|gb|AAC38371.1| EscT [Escherichia coli] gi|215267064|emb|CAS11509.1| T3SS structure protein EscT [Escherichia coli O127:H6 str. E2348/69] gi|312287496|gb|EFR15404.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli 2362-75] gi|323189403|gb|EFZ74684.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli RN587/1] Length = 258 Score = 92.4 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 94/235 (40%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++S F + R ++LP S + +R +AF++ ++ T + Sbjct: 7 VIVSSFYCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPII-VENYTFSEKLPSGI 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + +V+ E+ +G GL + + G +I T G + + S S + + Sbjct: 66 FQLTGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLRL 185 ++ + + + L SY +P+ ++ F F+ L +F+ +ML Sbjct: 126 ILYQFISVIFVIHGGIQSILDKLYLSYEILPLQADIAFNRALIDFLFSLWDSFIKLMLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 S P + + ++ G LNK PQ+ ++ +S P + L L I + + Sbjct: 186 SVPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240 >gi|218706360|ref|YP_002413879.1| putative type III secretion protein EpaR [Escherichia coli UMN026] gi|293406352|ref|ZP_06650278.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|300898069|ref|ZP_07116437.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 198-1] gi|218433457|emb|CAR14359.1| putative Type III secretion protein EpaR [Escherichia coli UMN026] gi|291426358|gb|EFE99390.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|300358207|gb|EFJ74077.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 198-1] Length = 255 Score = 92.4 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 5/236 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M ++ + L CR+ LLP + IP VR + S L+ + Sbjct: 5 MLYQLHSLLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELST 64 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 N ++ A ++ E+ +G L+ GS I G L +++ + + Sbjct: 65 LNEIDVALFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVD 121 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L L + + + L +SY P G + + Sbjct: 122 TSELARLFNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMT 179 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +SP + + +GLL + Q+ + IS L L L + I+ Sbjct: 180 HTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 235 >gi|89111154|dbj|BAE80244.1| HrcT [Acidovorax avenae subsp. avenae] Length = 286 Score = 92.4 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 4/234 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L L R + +++LP + + +VR + + L + Sbjct: 5 LALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVAW--GQPSGLLESTGPLVFIA 62 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G + G + V + G +I G N TP+ +L+ + Sbjct: 63 LVVKEALIGMLIGFAVSVVFWAAEGIGMLIDNQAGYNNIQQTNPLSGQQSTPVGNLLMQL 122 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPF 189 ++ +++ L SY P+ + + + F + + +L+++ P Sbjct: 123 AIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLKIAGPV 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L ++ ++ +GLL+K ++ ++ P L L L + + +Q Sbjct: 183 LMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 236 >gi|157162318|ref|YP_001459636.1| type III secretion apparatus protein EpaR [Escherichia coli HS] gi|170018893|ref|YP_001723847.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli ATCC 8739] gi|312972920|ref|ZP_07787093.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli 1827-70] gi|157067998|gb|ABV07253.1| type III secretion apparatus protein EpaR [Escherichia coli HS] gi|169753821|gb|ACA76520.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli ATCC 8739] gi|310332862|gb|EFQ00076.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli 1827-70] gi|323941619|gb|EGB37799.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E482] gi|332344755|gb|AEE58089.1| type III secretion apparatus protein EpaR [Escherichia coli UMNK88] Length = 255 Score = 92.0 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLSSPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 235 >gi|89111187|dbj|BAE80276.1| HrcT [Acidovorax avenae subsp. avenae] Length = 282 Score = 92.0 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 4/234 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L L R + +++LP + + +VR + + L + + Sbjct: 5 LALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVAW--GQPSGLLESTSPLVFIA 62 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E +G + G + V + G +I G N TP+ +L+ + Sbjct: 63 LVVKEALIGMLIGFAVSVVFWAAEGIGMLIDNQAGYNNIQQTNPLSGQQSTPVGNLLMQL 122 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPF 189 ++ +++ L SY P+ + + + F + + +L+++ P Sbjct: 123 AIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLKIAGPV 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 L ++ ++ +GLL+K ++ ++ P L L L + + +Q Sbjct: 183 LMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 236 >gi|49082920|gb|AAT50860.1| PA1691 [synthetic construct] Length = 263 Score = 92.0 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 80/206 (38%), Gaps = 5/206 (2%) Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ SC ++LP L+ + VR A + ++ P + + L + + L+ E Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGS--LPPALGALDIALLIGKE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + LG + G + + ++ TG +I G L ++ S +P L+ + Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + +L +SY + P+ + F M+ ++P L Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ P + ++ ++ P Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIK 222 >gi|293416106|ref|ZP_06658746.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B185] gi|300936204|ref|ZP_07151140.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 21-1] gi|291432295|gb|EFF05277.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B185] gi|300458661|gb|EFK22154.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 21-1] Length = 255 Score = 92.0 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L + + +N Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCAL---VQHYHYELSTLNEI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L E+ +G L+ GS I G L +++ + + + L L Sbjct: 69 DIALLAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 235 >gi|301027458|ref|ZP_07190795.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 69-1] gi|331664424|ref|ZP_08365330.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli TA143] gi|331674340|ref|ZP_08375100.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli TA280] gi|300394966|gb|EFJ78504.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 69-1] gi|331058355|gb|EGI30336.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli TA143] gi|331068434|gb|EGI39829.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli TA280] Length = 255 Score = 92.0 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 5/236 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M ++ + L CR+ LLP + IP VR + S L+ + Sbjct: 5 MLYQLHSLLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELST 64 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 N ++ A ++ E+ +G L+ GS I G L +++ + + Sbjct: 65 LNEIDIALFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVD 121 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + L L + + + L +SY P G + + Sbjct: 122 TSELARLFNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMT 179 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +SP + + +GLL + Q+ + IS L L L + I+ Sbjct: 180 HTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 235 >gi|293412210|ref|ZP_06654933.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B354] gi|284922801|emb|CBG35889.1| type III secretion system protein [Escherichia coli 042] gi|291468981|gb|EFF11472.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B354] gi|323966653|gb|EGB62085.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli M863] gi|323978520|gb|EGB73602.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli TW10509] gi|327251614|gb|EGE63300.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli STEC_7v] Length = 255 Score = 92.0 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 235 >gi|170701288|ref|ZP_02892254.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria IOP40-10] gi|170133811|gb|EDT02173.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria IOP40-10] Length = 268 Score = 92.0 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 5/228 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ +M+ P S + + +VR A+ + + + L N + + E Sbjct: 28 RLMVLMMIFPPTSDNVVQGRVRTALALLWGSFVA---YGQRGLLEQGNATILVGIGLKEA 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G + G+ + G N S + ++L+ + A W Sbjct: 85 LIGVGLGFAASTVFWAAESVGTYVDDLTGFNQLQMQNPSQGQQTSLTSTLLSQFAIAAFW 144 Query: 138 VIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 + + A+ +SY P+G G++ SFV + + M + +L++P + ++ Sbjct: 145 CLGGMTFLLGAIYESYTWWPLGSLAPAGGSVLESFVLLKTDSLMETVAKLATPMMLMLLL 204 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +I G K+ ++ + ++ P L L L L I + Q Sbjct: 205 IDIGFGFTGKVSQKLDLPSLAQPVKGALTILMLALMAAIFIDQVRDQL 252 >gi|15804242|ref|NP_290281.1| hypothetical protein Z5133 [Escherichia coli O157:H7 EDL933] gi|15833835|ref|NP_312608.1| EscT [Escherichia coli O157:H7 str. Sakai] gi|168748642|ref|ZP_02773664.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4113] gi|168753531|ref|ZP_02778538.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4401] gi|168759828|ref|ZP_02784835.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4501] gi|168766128|ref|ZP_02791135.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4486] gi|168772323|ref|ZP_02797330.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4196] gi|168779863|ref|ZP_02804870.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4076] gi|168785596|ref|ZP_02810603.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC869] gi|168798677|ref|ZP_02823684.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC508] gi|193069191|ref|ZP_03050148.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E110019] gi|195936264|ref|ZP_03081646.1| EscT [Escherichia coli O157:H7 str. EC4024] gi|208806963|ref|ZP_03249300.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4206] gi|208812977|ref|ZP_03254306.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4045] gi|208818204|ref|ZP_03258524.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4042] gi|209399341|ref|YP_002273177.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4115] gi|217325738|ref|ZP_03441822.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. TW14588] gi|254795656|ref|YP_003080493.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|260869699|ref|YP_003236101.1| putative T3SS structure protein EscT [Escherichia coli O111:H- str. 11128] gi|261225800|ref|ZP_05940081.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK2000] gi|261258845|ref|ZP_05951378.1| putative T3SS structure protein EscT [Escherichia coli O157:H7 str. FRIK966] gi|291285069|ref|YP_003501887.1| escT [Escherichia coli O55:H7 str. CB9615] gi|12518475|gb|AAG58845.1|AE005597_3 escT [Escherichia coli O157:H7 str. EDL933] gi|3414915|gb|AAC31526.1| L0047 [Escherichia coli] gi|13364056|dbj|BAB38004.1| type III secretion system EscT protein [Escherichia coli O157:H7 str. Sakai] gi|54311602|emb|CAG17517.1| EscT protein [Escherichia coli] gi|187771699|gb|EDU35543.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4196] gi|188016878|gb|EDU55000.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4113] gi|189002261|gb|EDU71247.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4076] gi|189359318|gb|EDU77737.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4401] gi|189364656|gb|EDU83075.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4486] gi|189369749|gb|EDU88165.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4501] gi|189374415|gb|EDU92831.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC869] gi|189378810|gb|EDU97226.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC508] gi|192957515|gb|EDV87961.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E110019] gi|195957532|gb|ACG59643.1| type III secretion system protein EscT [Escherichia coli O157:H7] gi|195957591|gb|ACG59701.1| type III secretion system protein EscT [Escherichia coli] gi|195957648|gb|ACG59757.1| EscT [Escherichia coli] gi|208726764|gb|EDZ76365.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4206] gi|208734254|gb|EDZ82941.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4045] gi|208738327|gb|EDZ86009.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4042] gi|209160741|gb|ACI38174.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC4115] gi|217321959|gb|EEC30383.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. TW14588] gi|221361438|emb|CAX18591.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361495|emb|CAX18666.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361556|emb|CAX18746.1| Type III secretion system, LEE associated [Escherichia coli] gi|254595056|gb|ACT74417.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|255348329|gb|ACU09471.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli] gi|257766055|dbj|BAI37550.1| putative T3SS structure protein EscT [Escherichia coli O111:H- str. 11128] gi|290764942|gb|ADD58903.1| escT [Escherichia coli O55:H7 str. CB9615] gi|320639371|gb|EFX08986.1| escT hypothetical protein [Escherichia coli O157:H7 str. G5101] gi|320644815|gb|EFX13851.1| escT [Escherichia coli O157:H- str. 493-89] gi|320650079|gb|EFX18575.1| escT [Escherichia coli O157:H- str. H 2687] gi|320655426|gb|EFX23361.1| escT [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661052|gb|EFX28488.1| escT [Escherichia coli O55:H7 str. USDA 5905] gi|320666178|gb|EFX33184.1| escT [Escherichia coli O157:H7 str. LSU-61] gi|323178897|gb|EFZ64473.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli 1180] Length = 258 Score = 91.6 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 93/235 (39%), Gaps = 3/235 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++S F + R ++LP S + +R +AF++ ++ T + Sbjct: 7 VIVSSFYCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPII-VENYTFSEKLPSGI 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + + + E+ +G GL + + G +I T G + + S S + + Sbjct: 66 FQLTGIALKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGV 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLRL 185 ++ + + + L SY +P+ ++ F F+ L +F+ +ML Sbjct: 126 ILYQFISVIFVIHGGIQSILDKLYLSYEILPLQADIAFNRALIDFLFSLWDSFIKLMLSF 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 S P + + ++ G LNK PQ+ ++ +S P + L L I + + Sbjct: 186 SVPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240 >gi|115360592|ref|YP_777729.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria AMMD] gi|172064916|ref|YP_001815628.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MC40-6] gi|115285920|gb|ABI91395.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria AMMD] gi|171997158|gb|ACB68075.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MC40-6] Length = 268 Score = 91.6 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 5/228 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ +M+ P S + + +VR A+ + + + L + + + E Sbjct: 28 RLMVLMMIFPPTSDNVVQGRVRTALALLWGSFVA---YGQRGLLEQGDATILVGIGLKEA 84 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G + G+ + G N S + ++L+ + A W Sbjct: 85 LIGVGLGFAASTVFWAAESVGTYVDDLTGFNQLQMQNPSQGQQTSLTSTLLSQFAIAAFW 144 Query: 138 VIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 + + A+ +SY P+G G++ SFV + + M + +L++P + ++ Sbjct: 145 CLGGMTFLLGAIYESYTWWPLGSLAPAGGSVLESFVLLKTDSLMETVAKLATPMMLMLLL 204 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +I G K+ ++ + ++ P L L L L I + Q Sbjct: 205 IDIGFGFTGKVSQKLDLPSLAQPVKGALTILMLALLAAIFIDQVRDQL 252 >gi|15596888|ref|NP_250382.1| translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] gi|9947664|gb|AAG05080.1|AE004596_6 translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] Length = 262 Score = 91.6 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 80/206 (38%), Gaps = 5/206 (2%) Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ SC ++LP L+ + VR A + ++ P + + L + + L+ E Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGS--LPPALGALDIALLIGKE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + LG + G + + ++ TG +I G L ++ S +P L+ + Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + +L +SY + P+ + F M+ ++P L Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ P + ++ ++ P Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIK 222 >gi|171915732|ref|ZP_02931202.1| translocation protein in type III secretion [Verrucomicrobium spinosum DSM 4136] Length = 262 Score = 91.6 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 96/238 (40%), Gaps = 3/238 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 I++++ + R+ + + + P + +I R ++ + + +P + + + + + Sbjct: 11 ILLTVAFTLPRMMAALSVSPFFAQQFITGIARQVVIISLTTLAIPMVHYS-GVPDNPDML 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 Y ++ E+ +G + G + + + TG I G ++ + +P L Sbjct: 70 YLIGVLTKEVAIGMLLGFVTGMAFWIAEGTGFFIDNQRGSSMAEMFDPMSGESTSPFGLL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 I + +V + SY P+ F+++L +++ Sbjct: 130 FARIIGVFFFVGGGFMAFLTIMYDSYVHWPVFSWFPKMEPAFPVVFLHVLDKMMGLIVTF 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++P + + +GL+N+ PQ+ ++F++ P G+ ++ + + +V + F Sbjct: 190 AAPLVIAMFIAEFGMGLMNRFSPQLNVFFLAMPVKSGIAAVLIIFYLVFLVGFLRNEF 247 >gi|118592628|ref|ZP_01550018.1| yscT; putative type III secretion protein [Stappia aggregata IAM 12614] gi|118434679|gb|EAV41330.1| yscT; putative type III secretion protein [Stappia aggregata IAM 12614] Length = 282 Score = 91.6 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 92/234 (39%), Gaps = 3/234 (1%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E M+SL + + R+ + I + LS +P R + ++ L+P I L Sbjct: 12 EKHMLSLAMSLPRIYAFIAMSGILSTGVVPRLARNGAILILALPLVPVNMANISLIGDSL 71 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A + E +G + G +I + G + G + +S+ TPL Sbjct: 72 PA-LALYFAKEYAIGFLIGYMIGWIFWSVTSAGDFMDNQRGAAIASSIDPLQGQETTPLG 130 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIML 183 +L L ++ + + L KS+ P+ + L + +L M Sbjct: 131 NLFSQAFLTYMYSVGGILIIIGILYKSFMIWPVTRMLPIVSERFPVLILEILDLGMRTMF 190 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 L++P + + +++ L+++ PQI ++ +S G+ + L I+I+ Sbjct: 191 VLAAPVIALMFLSELALALVSRFAPQIQVFILSMGIKSGIATFVLVFYIKILFP 244 >gi|228958049|ref|ZP_04119784.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801566|gb|EEM48448.1| Type III secretion system inner membrane R protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 243 Score = 91.6 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 4/212 (1%) Query: 30 SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRV 89 S IP ++ F + SI + D +D+ + + ++ +G ++ + Sbjct: 17 SGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDVAAYAATQIVIGLSLSKIVEM 72 Query: 90 YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYAL 149 + G ++ IGL+ + ++ T L++L + L+ + + + Sbjct: 73 LWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTLFDMFFLIIFISLGGINYFVATI 132 Query: 150 VKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQ 209 +KS+ +L + S + L + ++ P + + N + L+ K PQ Sbjct: 133 LKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPLMGSLFIINFVLILIAKNAPQ 192 Query: 210 IPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 + ++ + I G LF+ +S+ ++ Y F + Sbjct: 193 LNVFMNAYVIKITCGILFIAMSVPMLGYVFKN 224 >gi|94496748|ref|ZP_01303323.1| translocation protein in type III secretion [Sphingomonas sp. SKA58] gi|94423761|gb|EAT08787.1| translocation protein in type III secretion [Sphingomonas sp. SKA58] Length = 268 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 7/219 (3%) Query: 7 IIMMSLFLI---VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 MM L L+ R G ++P + + IP VR + F V + + Sbjct: 13 GWMMELLLVGIASARFGFAFAIIPLFAQNTIPATVRNAIILTFGGVAFALQPNFM--VQD 70 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 + ++ +++ E +G G ++ G +I +G + + + + Sbjct: 71 IGTFGWAIMLLREAGIGIAIGFFFATILWAMEAAGEIIDAKVGATIGQILEPNGGTMTSL 130 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMI 181 SL+ + + + +++S+ PI + + F + Sbjct: 131 TGSLLQRLAHVLFAAWGGLLLLVGTIMESFVIWPIAKSWPVLDPQSLILFEGEFGRLMTL 190 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 L ++P L V + ++GLLN+ Q+ ++ +S Sbjct: 191 ALVFAAPILVMLYVVDAALGLLNRFAQQLNVFSLSLSIK 229 >gi|313110377|ref|ZP_07796266.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] gi|310882768|gb|EFQ41362.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] Length = 262 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 81/206 (39%), Gaps = 5/206 (2%) Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ SC ++LP L+ + VR A + ++ P + + L + + L+ E Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGS--LPPALGALDIALLIGKE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + LG + G + + ++ TG +I G L +++ S +P L+ + Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTLNPSLGSQTSPTGLLLTQTLITLF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + +L +SY + P+ + F M+ ++P L Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQFGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ P + ++ ++ P Sbjct: 197 LAEFGLALISRFAPSLNVFILAMPIK 222 >gi|256024633|ref|ZP_05438498.1| putative type III secretion protein [Escherichia sp. 4_1_40B] gi|300950612|ref|ZP_07164514.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 116-1] gi|300958193|ref|ZP_07170347.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 175-1] gi|301026125|ref|ZP_07189599.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 196-1] gi|301643801|ref|ZP_07243838.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 146-1] gi|307139548|ref|ZP_07498904.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli H736] gi|331643548|ref|ZP_08344679.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli H736] gi|299879820|gb|EFI88031.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 196-1] gi|300315145|gb|EFJ64929.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 175-1] gi|300450092|gb|EFK13712.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 116-1] gi|301077834|gb|EFK92640.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 146-1] gi|309703220|emb|CBJ02555.1| type III secretion system protein [Escherichia coli ETEC H10407] gi|331037019|gb|EGI09243.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli H736] Length = 255 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALCFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 235 >gi|116049641|ref|YP_791554.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] gi|296389925|ref|ZP_06879400.1| translocation protein in type III secretion [Pseudomonas aeruginosa PAb1] gi|115584862|gb|ABJ10877.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] Length = 262 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 81/206 (39%), Gaps = 5/206 (2%) Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ SC ++LP L+ + VR A + ++ P + + L + + L+ E Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGS--LPPALGALDIALLIGKE 76 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 + LG + G + + ++ TG +I G L +++ S +P L+ + Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTLNPSLGSQTSPTGLLLTQTLITLF 136 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + +L +SY + P+ + F M+ ++P L Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQFGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYL 220 + + L+++ P + ++ ++ P Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIK 222 >gi|331654349|ref|ZP_08355349.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli M718] gi|331047731|gb|EGI19808.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli M718] Length = 255 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTNGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPIL 235 >gi|254254349|ref|ZP_04947666.1| Type III secretory pathway component EscT [Burkholderia dolosa AUO158] gi|124898994|gb|EAY70837.1| Type III secretory pathway component EscT [Burkholderia dolosa AUO158] Length = 198 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 2/170 (1%) Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + LV E +G + +Q G +I G P + Sbjct: 1 MWCLLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGF 60 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLRL 185 + + + + +SY PIG + + V T F M++L Sbjct: 61 LNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVKL 120 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++P + ++ + IGL+ + VPQ+ I+ S P L L + L + ++ Sbjct: 121 AAPVIIVLVLVELGIGLVGRAVPQLNIFVFSQPVKSALAVLMMVLFLPVV 170 >gi|227820527|ref|YP_002824498.1| type III secretion component, RhcT [Sinorhizobium fredii NGR234] gi|227339526|gb|ACP23745.1| type III secretion component, RhcT [Sinorhizobium fredii NGR234] Length = 273 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 90/238 (37%), Gaps = 2/238 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + + R I++ P + +R A+A ++ L+P TI ++ Sbjct: 17 VLAGTAIAMARALGMIVITPAFVRLGLTGLIRSGVAIAIALPLIPGFTTTIMNGANLSTL 76 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ E+ LG + G++ + + G ++ G + + + + Sbjct: 77 MVTGLILKEIILGVIIGVMFGIPFWAAEVAGDLVDLQRGSTSAQLVDPLQATETSIAGTF 136 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRL 185 + + + + +SY P+ + + +L I + L Sbjct: 137 FVLALVALFFKSGGFSLLADTYYRSYEIWPVTSFSPALGSGAAEAVLAILDRVMQIGVLL 196 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +P + ++ ++ + L+++ PQ+ ++ +S L ++ + L + ++ F Sbjct: 197 IAPIVLALLIADLMLAYLSRMSPQLHVFDLSLAIKNLLFAILIVLYLNYLLQYMVAEF 254 >gi|120586864|ref|YP_961209.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564278|gb|ABM30021.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris DP4] Length = 271 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 93/236 (39%), Gaps = 6/236 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---LQNFVN 65 M++L + + R+ + P + + I Q+RL A + L P + + + + Sbjct: 16 MLALLVGMPRLFVIAQVAPFMGGNVISGQLRLVLVFACYLPLHPVIVGQLPHGHIFDPSL 75 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +Y L++ E LG + GLL + +Q G +I G ++ +P Sbjct: 76 MGHYGALLLKETLLGLLMGLLAGMAFWAVQSAGFLIDNQRGASMAEESDPMSGEQTSPTG 135 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIM 182 + + + + + L SY P+ ++ F + M Sbjct: 136 AFLLQVMMYLFYASGAFVAFLGLLYTSYEVWPVPSLTPLSWRADLPLYFAGKVAWLMTHM 195 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 L L+ P + ++ ++S+GL+N+ Q+ +Y ++ P + SL L L +V Sbjct: 196 LLLAGPIMVACLLADLSLGLVNRFASQLNVYVLAMPVKSAVASLLLLLYFGALVAH 251 >gi|238898599|ref|YP_002924280.1| type III needle complex export protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466358|gb|ACQ68132.1| type III needle complex export protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 254 Score = 90.9 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 5/229 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ + R+ LLP S + + +RL M + L P+ + Sbjct: 13 LIVVLFASARLMPAFFLLPFFSNNVLTGSLRLPITMLVAFSLWPY---QEKVLPPFETFL 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y LV EL +G + LI L G++I G + +S+ + + L++ Sbjct: 70 YLGLVSKELLIGVLLAFLISWPFWILHAVGAIIDNQRGATISSSIDPISGVDTSELSNFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + +SY ++ F FS +L L L+SP Sbjct: 130 NLFAAAVFLQGGGMTLFLESYHQSYQICSPLRDCTFA--FSPIFAILTKLMSKSLILASP 187 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + ++ +GLL++ PQ+ + I+ + L + L + Sbjct: 188 VIAVLLMTEAILGLLSRFAPQLNAFSIALTVKSLIAFLVIILYFSAFIP 236 >gi|46562155|ref|YP_009142.1| type III secretion inner membrane protein [Desulfovibrio vulgaris str. Hildenborough] gi|46447692|gb|AAS94358.1| type III secretion inner membrane protein [Desulfovibrio vulgaris str. Hildenborough] gi|311235486|gb|ADP88339.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris RCH1] Length = 271 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 93/236 (39%), Gaps = 6/236 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---LQNFVN 65 M++L + + R+ + P + + + Q+RL A + L P + + + + Sbjct: 16 MLALLVGMPRLFVIAQVAPFMGGNVVSGQLRLVLVFACYLPLHPVIVGQLPHGHIFDPSL 75 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 +Y L++ E LG + GLL + +Q G +I G ++ +P Sbjct: 76 MGHYGALLLKETLLGLLMGLLAGMAFWAVQSAGFLIDNQRGASMAEESDPMSGEQTSPTG 135 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIM 182 + + + + + L SY P+ ++ F + M Sbjct: 136 AFLLQVMMYLFYASGAFVAFLGLLYTSYEVWPVPSLTPLSWRADLPLYFAGKVAWLMTHM 195 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 L L+ P + ++ ++S+GL+N+ Q+ +Y ++ P + SL L L +V Sbjct: 196 LLLAGPIMVACLLADLSLGLVNRFASQLNVYVLAMPVKSAVASLLLLLYFGALVAH 251 >gi|254255059|ref|ZP_04948376.1| Type III secretory pathway component EscT [Burkholderia dolosa AUO158] gi|124899704|gb|EAY71547.1| Type III secretory pathway component EscT [Burkholderia dolosa AUO158] Length = 256 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 84/227 (37%), Gaps = 7/227 (3%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ L R+G +LP L + + R + ++ P ++ + Sbjct: 11 GWLLAAALGFARIGPIFFMLPFLDNNVLTGSARNAVIVIVALGFWP---PPLNTVIELGT 67 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 Y V EL +G V G L+ GS+I G +S+ ++ + + L + Sbjct: 68 LPYLAAVAQELTIGAVLGALLAWPFWVFHAAGSLIDNQRGATFSSSVDPANGIDTSELAN 127 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + A+ SY Q +++ ++ + + ++ Sbjct: 128 FLNLFVGAVYLHNGGLDVFVRAIDGSYRLCDPLQGCALE--WTAATQIIDAVIVKAVVVA 185 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYL--IGLGSLFLCLS 231 SP + + +S+GLL + PQ+ + +S + G L + +S Sbjct: 186 SPVIALLFLCEMSLGLLGRFTPQMNPFSVSMTVKSVVVFGMLLIYMS 232 >gi|238757867|ref|ZP_04619049.1| Secretion system apparatus protein ssaT [Yersinia aldovae ATCC 35236] gi|238703852|gb|EEP96387.1| Secretion system apparatus protein ssaT [Yersinia aldovae ATCC 35236] Length = 207 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 1/172 (0%) Query: 45 AFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTA 104 V+LP L + L+ E+ +G + G + + G +I T Sbjct: 32 VLLAVMLPMLPLIHAQVEIHPGWGWLNLIPGEMLIGLLLGFCAAIPFWAVDMAGFLIDTL 91 Query: 105 IGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF 164 G + T + S+ + L L ++ + + AL SY P G L F Sbjct: 92 RGATMGTVFNPAMSVQTSILGLLFSQFLCALFFMTGGFNLLLSALYDSYHYFPPGNVLQF 151 Query: 165 -GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFI 215 F+ + Q + + L S P + ++ ++++GLLN+ Q+ ++F+ Sbjct: 152 NSTFFNFLLTEWQMLYRLCLSFSLPAVLSMVLADLALGLLNRSAQQLNVFFL 203 >gi|260775665|ref|ZP_05884561.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC BAA-450] gi|260608081|gb|EEX34250.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC BAA-450] Length = 259 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 97/241 (40%), Gaps = 3/241 (1%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + + +L + + RV ++++P S + +R A A + + P ++ L + Sbjct: 11 LWLKTLSVALARVLPIVIMVPLFSSRELKGVIRYGVAFALCMFIAPLIYGDDALHTMASN 70 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 S L++ EL LG V G L+ + G++ G + S +PL+ Sbjct: 71 -QLSFLLLKELVLGIVIGALMAMPFWLFDSVGALFDNQRGALIGGQFNPLLSGVSSPLSH 129 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184 ++ ++ L + + + + SY P + ++ ++ + TF M+ Sbjct: 130 MLQQCAIIVLIEVVGVNVLLDTIWNSYRAWPPLRWTPAFSPDMNQQWLANISITFTKMIL 189 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++P + + ++ LL PQ+ ++ +S P +G L + + +++ Sbjct: 190 YAAPLIVVMLFIEFAMALLGLYSPQMQVFVLSIPIKCLVGMAMLTIYLSVLLRFMEQDME 249 Query: 245 Y 245 Y Sbjct: 250 Y 250 >gi|296274005|ref|YP_003656636.1| type III secretion system inner membrane R protein [Arcobacter nitrofigilis DSM 7299] gi|296098179|gb|ADG94129.1| type III secretion system inner membrane R protein [Arcobacter nitrofigilis DSM 7299] Length = 249 Score = 90.1 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 97/243 (39%), Gaps = 5/243 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E +++ L+ R+ + + +P + +++R + ++ L P L +++ V Sbjct: 10 ESTVINFLLLFARILAFMAFMPIFGHKVVNVRMRAALSFYVTLFLFPML----QIESQVT 65 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + + ++ E LG + +L+ + ++ G + A L++ + + E L Sbjct: 66 SSGFLIAILSEATLGLIASMLVNIIFNAVKMIGEFVGYATALSMASFFDPASGTNEGILA 125 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLR 184 L+ I L + + F L KS+ + +G + + ++ + F Sbjct: 126 RLMFYISLAVFFESGMYEMTFSILAKSFSIVHLGAFDIYSYDGIKLLIDEINRMFAFTFA 185 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + P F V +I K +P + I+ L +F+ + +E+ F++ F+ Sbjct: 186 FAFPLFFIGFVIDIYYAYGTKSMPAFSPFVITFQLKFALIMIFIMMGMEVFTEAFTNYFI 245 Query: 245 YGF 247 F Sbjct: 246 TKF 248 >gi|330809226|ref|YP_004353688.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377334|gb|AEA68684.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 247 Score = 90.1 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 7/232 (3%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ L+ R+ +++ P L S IP+ VRL A+A S VL+ + T + Sbjct: 5 FFLNALLVSVRLIPLVVVSPILFFSRIPLTVRLILALALSGVLVGSMTLTHAPVFTLPVV 64 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ V + G G+ G +I T IGLN S + L Sbjct: 65 LGELLLGVLMAFGF------HAAHAGVDMAGKLIDTQIGLNAAGVFDPGTSNMTGLMAEL 118 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + V++ HH + + +P G S M Q F++ + Sbjct: 119 LVWSLGALFVVLNLHHDLLRVFAQLLVAVPPGSVSLSTLSVSLATVMTQQ-FLLAFMIVV 177 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 P + + +++ L++ +PQ +YF+S P +G+G L++ +IV + Sbjct: 178 PVILGLWLIDVAFAFLSRSMPQANVYFLSLPLKLGVGMFIFILTLPMIVQRL 229 >gi|238755991|ref|ZP_04617316.1| hypothetical protein yruck0001_28530 [Yersinia ruckeri ATCC 29473] gi|238705780|gb|EEP98172.1| hypothetical protein yruck0001_28530 [Yersinia ruckeri ATCC 29473] Length = 264 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M++L L R+ LLP L+ + + V+ + + L P+L + + Sbjct: 20 MITLALAYMRIAPVFFLLPFLNTKLLNGVVVKNSLIIYICLGLWPYLSRG---EFVRQQL 76 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 +++ EL +G + I + L G +I G + ++ ++ + + ++L Sbjct: 77 GIVDIILYELSIGVILAFFICMPFLIANIIGEIIDNQRGATISDTIDPANGIESSEFSAL 136 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + I + +++ + SY +P GQ + + L T ++S Sbjct: 137 LNYIVCMVFLSQGGMYKLVESFADSYKLMPFGQGFSLFEPL-LLGSWLNTLVSQGFIMAS 195 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 P L + +++GL ++ PQ+ + +S + L Sbjct: 196 PVLVTLFLSEVALGLYSRFCPQLNAFSLSLAVKSIIAFSVFLL 238 >gi|39545583|gb|AAR27890.1| AscT [Aeromonas hydrophila] Length = 262 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 98/236 (41%), Gaps = 5/236 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + M++ L++ R SC ++LP LS + +R + ++ P + +T L + Sbjct: 7 QGQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVICSLALFAYPMVANT--LPPTI 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + LV E+ LG + G + + ++ +G +I G + + S + +P Sbjct: 65 TALDLALLVAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMASIFNPSLASQTSPT 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIM 182 L+ + + + AL +SY + P+ S F + ++ Sbjct: 125 GLLLTQTLITLFFASGAFLALLSALFQSYASWPVAHFFPTIGDRWVSFFYSQFSQMLLLC 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 L++P L + + L+++ P + ++ ++ P + SL L + I++++ Sbjct: 185 ALLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAVASLLLVIYIKLMMDH 240 >gi|254253722|ref|ZP_04947039.1| Type III secretory pathway component EscT [Burkholderia dolosa AUO158] gi|124898367|gb|EAY70210.1| Type III secretory pathway component EscT [Burkholderia dolosa AUO158] Length = 248 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 80/228 (35%), Gaps = 5/228 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ +M+ P S + + +VR A+ + + + L + + + E Sbjct: 8 RLMVLMMIFPPTSDNVVQGRVRTALALLWGSFIA---YGQRGLLEQGDATMLVGIGLKEA 64 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G G + G+ + G N S + ++L+ + A W Sbjct: 65 LIGVGLGFAASAVFWAAESVGTYVDDLTGFNQLQMQNPSQGQQTSLTSTLLSQFAIAAFW 124 Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + + A+ +SY P+ G S + + + +L++P + ++ Sbjct: 125 CLGGMTFLLGAIYESYTWWPLANLTPAGGSVLESFVLTKTDSLMETVAKLATPMMLMLLL 184 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +I G K+ ++ + ++ P L L L L I + Q Sbjct: 185 IDIGFGFTGKVSQKLDLPSLAQPVKGALTILMLALMAAIFIDQVRDQL 232 >gi|330953284|gb|EGH53544.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 271 Score = 89.7 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 94/232 (40%), Gaps = 2/232 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L R +++ P + + +R C A+A S+ ++ ++ + + + L+ Sbjct: 22 LAASRAMGVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLM 81 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + EL +G + GLL + + G +I G ++ + + + +L+ ++ + Sbjct: 82 IKELLIGLLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLI 141 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 ++ + SY P+ + L +S + +L I + + +P L Sbjct: 142 TLFFMSGGFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLI 201 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ ++ + L+++ P + I+ +S P S+ + + I ++ Sbjct: 202 AMLITDLMLAYLSRMAPSLHIFDLSLPVKNLFFSVLMVVYIGFLIPVMIDQL 253 >gi|171316794|ref|ZP_02906005.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] gi|171098052|gb|EDT42868.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] Length = 271 Score = 89.7 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 79/204 (38%), Gaps = 4/204 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+G +++ P + VR + FS + ++L + ++ A + ++ E Sbjct: 27 LRLGIVMIVFPPAGDGALQGTVRNGLVLLFSTYVA--YGQPVELMDTLHGAQLVQTIVRE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G + +Q G I G N + S TP+++L G I A Sbjct: 85 AAIGFLLAFSASTVFWAVQSAGVYIDALTGYNNIQIVNPVRSEQSTPISTLFGQIANTAF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 W + + L +SYG P+ G + S + T ++ +L++P F + Sbjct: 145 WALGGGVVLLGMLYESYGWSPVSAAWPESTGILSSFLLQQTDTLMQMIAKLAAPMAFMLL 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTP 218 + + K P++ + +S P Sbjct: 205 LVDFGFAFAAKSAPKLDLMNLSQP 228 >gi|191166041|ref|ZP_03027877.1| type III secretion apparatus protein EpaR [Escherichia coli B7A] gi|190903989|gb|EDV63702.1| type III secretion apparatus protein EpaR [Escherichia coli B7A] Length = 255 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFAPIL 235 >gi|167573415|ref|ZP_02366289.1| type III secretion inner membrane protein SctT, putative [Burkholderia oklahomensis C6786] Length = 313 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L + A+ + E Sbjct: 29 RLLVIMTILPATADNVLKGTLRNGAAAVWCLFVA---CGQQALIPQLRGAFLVIVCTKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYVDDVAGFNNVQMQNPSTGTQTSLMGTLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +SY P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMMFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMIARIATPMMVMVLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + IS P + L + + V + Sbjct: 206 IDLCLAFVTRSAQKLDLMSISQPLKGAVAVLIVAVLAGSFVTEM 249 >gi|167566313|ref|ZP_02359229.1| type III secretion inner membrane protein SctT, putative [Burkholderia oklahomensis EO147] Length = 328 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L + A+ + E Sbjct: 29 RLLVIMTILPATADNVLKGTLRNGAAAVWCLFVA---CGQQALIPQLRGAFLVIVCTKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYVDDVAGFNNVQMQNPSTGTQTSLMGTLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +SY P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMMFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMIARIATPMMVMVLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + IS P + L + + V + Sbjct: 206 IDLCLAFVTRSAQKLDLMSISQPLKGAVAVLIVAVLAGSFVTEM 249 >gi|193071822|ref|ZP_03052711.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E110019] gi|192954862|gb|EDV85376.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E110019] Length = 255 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFAPIL 235 >gi|167615463|ref|ZP_02384098.1| type III secretion inner membrane protein SctT, putative [Burkholderia thailandensis Bt4] Length = 315 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVIMSILPATADTVLKGPMRSGAAALWCLFVA---CGQQALIPQLHGAFLVIACLKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVIGIAASTVFWAAEAIGTYVDDVAGFNNLQMQNPSSGTQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +SY P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMVARIATPMMTMLVL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVNEM 249 >gi|167577316|ref|ZP_02370190.1| type III secretion inner membrane protein SctT, putative [Burkholderia thailandensis TXDOH] Length = 345 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVIMSILPATADTVLKGPMRSGAAALWCLFVA---CGQQALIPQLHGAFLVIACLKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVIGIAASTVFWAAEAIGTYVDDVAGFNNLQMQNPSSGTQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +SY P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMVARIATPMMTMLVL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVNEM 249 >gi|83717347|ref|YP_438939.1| type III secretion inner membrane protein SctT [Burkholderia thailandensis E264] gi|257142042|ref|ZP_05590304.1| type III secretion inner membrane protein SctT, putative [Burkholderia thailandensis E264] gi|83651172|gb|ABC35236.1| type III secretion inner membrane protein SctT, putative [Burkholderia thailandensis E264] Length = 330 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVIMSILPATADTVLKGPMRSGAAALWCLFVA---CGQQALIPQLHGAFLVIACLKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVIGIAASTVFWAAEAIGTYVDDVAGFNNLQMQNPSSGTQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +SY P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMVARIATPMMTMLVL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVNEM 249 >gi|145301465|ref|YP_001144304.1| AscT protein [Aeromonas salmonicida subsp. salmonicida A449] gi|38201231|emb|CAD56766.1| ascT protein [Aeromonas salmonicida subsp. salmonicida] gi|66947956|emb|CAE83093.1| AscT protein [Aeromonas salmonicida subsp. salmonicida] gi|142856347|gb|ABO92556.1| AscT protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 262 Score = 89.3 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 97/236 (41%), Gaps = 5/236 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + M++ L++ R SC ++LP LS + +R + ++ P + DT L + + Sbjct: 7 QAQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVVCSLALYAYPTVADT--LPDQI 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + L+ E+ LG + G + + ++ +G +I G + + S +P Sbjct: 65 DGMALAMLIAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMGSLFNPSLGSQTSPT 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIM 182 L+ + + + AL +SY + P+ + F ++ Sbjct: 125 GLLLTQTLITLFFASGAFLALLTALFQSYTSWPVAHFFPTIDEQWVNFFYGQFSHMLLLC 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 L++P L + + L+++ P + + ++ P + SL L + I++++ Sbjct: 185 ALLAAPLLIAMFLAEFGLALISRFAPSLNAFVLAMPIKSAVASLLLVIYIKLMMDH 240 >gi|260856975|ref|YP_003230866.1| type III secretion protein EpaR [Escherichia coli O26:H11 str. 11368] gi|260869538|ref|YP_003235940.1| type III secretion protein EpaR [Escherichia coli O111:H- str. 11128] gi|309793920|ref|ZP_07688345.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 145-7] gi|257755624|dbj|BAI27126.1| type III secretion protein EpaR [Escherichia coli O26:H11 str. 11368] gi|257765894|dbj|BAI37389.1| type III secretion protein EpaR [Escherichia coli O111:H- str. 11128] gi|308122327|gb|EFO59589.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 145-7] gi|323153849|gb|EFZ40085.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli EPECa14] gi|323180303|gb|EFZ65855.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli 1180] Length = 255 Score = 89.3 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFAPIL 235 >gi|209920315|ref|YP_002294399.1| putative type III secretion protein [Escherichia coli SE11] gi|300815711|ref|ZP_07095935.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 107-1] gi|307310522|ref|ZP_07590170.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli W] gi|209913574|dbj|BAG78648.1| putative type III secretion protein [Escherichia coli SE11] gi|300531640|gb|EFK52702.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 107-1] gi|306909417|gb|EFN39912.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli W] gi|315062166|gb|ADT76493.1| type III secretion system protein [Escherichia coli W] gi|320202504|gb|EFW77074.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli EC4100B] gi|323377250|gb|ADX49518.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli KO11] gi|324119900|gb|EGC13779.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E1167] Length = 255 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL + Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTIKSALAFLILIIYFAPIL 235 >gi|183600582|ref|ZP_02962075.1| hypothetical protein PROSTU_04168 [Providencia stuartii ATCC 25827] gi|188019859|gb|EDU57899.1| hypothetical protein PROSTU_04168 [Providencia stuartii ATCC 25827] Length = 267 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 5/231 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTID 59 M + + +++L + R+ + LP LS + ++ C + + L P L Sbjct: 12 MYFTFQEGLITLAIAWVRIAPTLFFLPFLSNKLLSSGMIKNCVTVYIVLGLWPLLSTH-- 69 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 R + ++V+ EL +G + L++ + + G +I T G + + + + Sbjct: 70 -NLQEERVGFMEIVLYELAVGLITALILALPFMIANIIGELIDTQRGETISSIVDPASGS 128 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 + L I I + + +SY +P + N + + Sbjct: 129 EASELAVFISYIVCMVFLSQGGMLLLVKTFAQSYQLLPFAAGFSQFNSL-ALGEWMNQMV 187 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + + L++P L + ++GL ++ PQ+ + +S + L Sbjct: 188 VKAIILAAPILITLFISEAALGLYSRFCPQLNAFSLSLTIKSIIAFAVFLL 238 >gi|108757930|ref|YP_633784.1| FliR/MopE/SpaR family exporter [Myxococcus xanthus DK 1622] gi|108461810|gb|ABF86995.1| bacterial export protein, FliR/MopE/SpaR family [Myxococcus xanthus DK 1622] Length = 264 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 4/220 (1%) Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 ++ P+II+++ L R+ L P L P VRL ++ S+ L +D Sbjct: 12 SLGPDIIVVA--LCAARLLPMTFLCPLLGGQATPTMVRLALVLSLSLFLRVEAGVVLDAP 69 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 A LV+ EL G GL+ + + G I G + + S+ E Sbjct: 70 VTSAVA-LGGLVIRELLFGTSVGLVAALPFDAARMGGRFIDLLRGTSAEASL-PLAGSRE 127 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 + + + + + V ++++ +G + +G + V + Sbjct: 128 SAAGEGLYHLLVALVVSGGMWPLVISSVLRGFGVVKLGAFVPTEAATLHVVLLAGAAMAT 187 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221 L + +P + + +GL ++ PQ+ + + TP I Sbjct: 188 GLAVGAPIAAAVLTVDCFLGLASRAAPQVNLQEVGTPLKI 227 >gi|145284336|gb|ABP51917.1| AscT [Aeromonas veronii bv. sobria] Length = 262 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 98/236 (41%), Gaps = 5/236 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + M++ L++ R SC ++LP LS + +R + ++ P + DT L + + Sbjct: 7 QAQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVVCSLALYAYPTVADT--LPDQI 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + L+ E+ LG + G + + ++ +G +I G + + S +P Sbjct: 65 DGMALAMLIAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMGSLFNPSLGSQTSPT 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIM 182 L+ + + + +L +SY + P+ + F ++ Sbjct: 125 GLLLTQTLITLFFASGAFLALLTSLFQSYISWPVAHFFPTIDEQWVNFFYGQFSHMLLLC 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 L++P L + + L+++ P + ++ ++ P + SL L + I++++ Sbjct: 185 ALLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAVASLLLVIYIKLMMDH 240 >gi|206896484|ref|YP_002246702.1| bacterial export protein, family 1 [Coprothermobacter proteolyticus DSM 5265] gi|206739101|gb|ACI18179.1| bacterial export protein, family 1 [Coprothermobacter proteolyticus DSM 5265] Length = 248 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 84/214 (39%), Gaps = 5/214 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + + + R+ ++ P L + ++ + + A S++ +P + LQ V+ + Sbjct: 6 LGFWPVFFRLLGFVLATPILPTRFFNLRTKAVLSFAISLISVPDFVAVLSLQTSVS---W 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ + E LG + G+ + L F G + G + T++ S+ + + Sbjct: 63 VQIYITEFALGLLLGIFSGIVYWALVFAGDLWDIMSGFQMMTAIDPFTSVPQPVMTQFFS 122 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 ++ V ++ SY IP G ++ S L F + L ++ P Sbjct: 123 LMAAAVFVVGGGLDSFIALVIMSYRLIPAGSFIHLA--LSEPALFLTRVFSLGLAVAIPI 180 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223 + I+ +G+++K P++ + P + Sbjct: 181 VVLVILLEFIMGVVSKGASGFPVFVVWIPLQTAV 214 >gi|82470756|gb|ABB77408.1| HrcT [Pantoea stewartii subsp. stewartii] Length = 265 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 3/229 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L L R+ C++L+P S + + VR +A +IV L + LQ Sbjct: 13 LFALALSAARLYPCLILVPVFSFNILKGIVRSGVVLALAIVPTLGLQAQLALQ-MPGWPQ 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E +G + GL+I + Q G++ G + + + TPL L+ Sbjct: 72 LIALILKEGVIGILLGLVISMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGLLL 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRLS 186 +L L + V + SY P+ Q L F N F ++ +L TF ++ + Sbjct: 132 QQTLILFLILTTGLSGVTQIIWDSYSVWPVMQWLPFPNHNGFEQYLALLTDTFSHIIIYA 191 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + ++ + SI +L+ PQ+ + +S P LG LF L I + Sbjct: 192 GPLVALLLMMDFSIAILSLYSPQLQAFVLSVPAKCLLGLLFFVLYIPTL 240 >gi|310823552|ref|YP_003955910.1| type III secretion inner membrane protein [Stigmatella aurantiaca DW4/3-1] gi|309396624|gb|ADO74083.1| Type III secretion inner membrane protein [Stigmatella aurantiaca DW4/3-1] Length = 264 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 2/210 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ L R+ L P L P V+L ++ ++ L + + + Sbjct: 18 AAVALCAARLVPMAFLCPLLGGQATPSPVKLSLVLSLALFLHLGAGVKVPVP-METLGEW 76 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L + EL G GLL + + G I G + + S+ E+ ++ Sbjct: 77 GALALKELVYGTAVGLLAALPFDAARMGGRFIDLFRGASAEASL-PVAGSRESAAGDVLY 135 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + + + +V ++ +G +P+G + + + L + +P Sbjct: 136 QLLVALVVTGGLFPRVLSGSLRGFGVVPLGTAVPSEAATGQVFLLAGSALATGLAIGAPI 195 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPY 219 + + +G+ ++ PQ+ + + P Sbjct: 196 AAASMAVDCWVGMASRAAPQMNLQELGAPL 225 >gi|197286515|ref|YP_002152387.1| type III secretion system protein [Proteus mirabilis HI4320] gi|227357589|ref|ZP_03841942.1| type III secretion system protein [Proteus mirabilis ATCC 29906] gi|194684002|emb|CAR45290.1| putative type III secretion system protein [Proteus mirabilis HI4320] gi|227162299|gb|EEI47303.1| type III secretion system protein [Proteus mirabilis ATCC 29906] Length = 257 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 98/245 (40%), Gaps = 8/245 (3%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFV 64 + ++ +FL++ R+ M +P L+ + Q+ + ++ + P + T L+ Sbjct: 9 QSYLIDIFLLIARLFPIFMFIPFLNSRVLNSQLLKYIIIFYIALGIKPSITITGVLRE-- 66 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 ++ +++ EL +G V GLL+ G + G ++ ++ + + + Sbjct: 67 ---TWAIVLISELIIGLVIGLLLATPFWIASAFGEFVDNQRGASIGDTINPTTGIESSEF 123 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 SL G+ + + + +SY PIG +N + + L + + Sbjct: 124 ASLTGLFCMAYFLATGGLVVLMSTIKESYDVFPIG-YINKNIGYDFIGHWLNDMVKVAII 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI-EIIVYQFSHSF 243 L SP L + +++G+ + PQ+ + +S + L L L + + H F Sbjct: 183 LVSPVLITMFLSEVALGVYSLFCPQLNAFSLSLCIKGIIAFLVLLLFFTSAMTNELYHFF 242 Query: 244 LYGFF 248 +F Sbjct: 243 NSRYF 247 >gi|54124950|gb|AAV30218.1| AscT [Aeromonas hydrophila] Length = 262 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 98/236 (41%), Gaps = 5/236 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + M++ L++ R SC ++LP LS + +R + ++ P + DT L + Sbjct: 7 QGQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVVCSLALFAYPMVADT--LPPTI 64 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + LV E+ LG + G + + ++ +G ++ G + + S + +P Sbjct: 65 DALDLALLVAKEVLLGLLIGFVAAIPFWAVEASGFLVDNQRGAAMASLFNPSLASQTSPT 124 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIM 182 L+ + + + AL +SY + P+ + F + +I Sbjct: 125 GLLLTQTLITLFFSGGAFLALLSALFQSYASWPVTRFFPAIGDLWVSFFYSQFSQMLLIC 184 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 L++P L + + L+++ P + ++ ++ P + S L + I++++ Sbjct: 185 ALLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPVKSAVASPLLVIYIKLMMDH 240 >gi|312172197|emb|CBX80454.1| Surface presentation of antigens protein SpaR [Erwinia amylovora ATCC BAA-2158] Length = 256 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ + R+ +LP L + + +I+ L ++T+ + Sbjct: 11 QHYLLIFAIAYARLAVVFYMLPILGERIFSHLIIKNAIITLTIIGLWPCFETVVIPEQS- 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + L++ E +G + ++ + + G ++ G ++ ++ + + L+ Sbjct: 70 ---WYLLLVQESIVGLILATVLCLPFWIVIGLGEILDNQRGASMADNIDPLNGGQNSILS 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ + ++ + + A +SY +P G G + +L + L Sbjct: 127 GLLNFTFGIIFFINNGMCLMLEAFTESYQFLPPGSR-WSGFHWQEAGRVLVIVVESGIML 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 ++P + ++ I +G+ + PQ+ + +S + + Sbjct: 186 AAPVIIVMMIAEILLGVFARYCPQLNPFSLSLTIKSFITFIIFF 229 >gi|289624373|ref|ZP_06457327.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646628|ref|ZP_06477971.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868643|gb|EGH03352.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 272 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 92/225 (40%), Gaps = 2/225 (0%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 +++ P + + +R C A+A S+ ++ ++ + + + L++ EL +G Sbjct: 29 GVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLIG 88 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + GLL + + G +I G ++ + + + +L+ ++ + ++ Sbjct: 89 LLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLITLFFMSG 148 Query: 141 FHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 + SY P+ + L +S + +L I + + +P L ++ ++ Sbjct: 149 GFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLIAMLITDL 208 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + L+++ P + I+ +S P ++ + + I ++ Sbjct: 209 MLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIDQL 253 >gi|298487106|ref|ZP_07005156.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158349|gb|EFH99419.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 272 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 92/225 (40%), Gaps = 2/225 (0%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 +++ P + + +R C A+A S+ ++ ++ + + + L++ EL +G Sbjct: 29 GVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLIG 88 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + GLL + + G +I G ++ + + + +L+ ++ + ++ Sbjct: 89 LLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLITLFFMSG 148 Query: 141 FHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 + SY P+ + L +S + +L I + + +P L ++ ++ Sbjct: 149 GFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLIAMLITDL 208 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + L+++ P + I+ +S P ++ + + I ++ Sbjct: 209 MLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIDQL 253 >gi|71736985|ref|YP_274733.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487954|ref|ZP_05641995.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71557538|gb|AAZ36749.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320328892|gb|EFW84891.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330882957|gb|EGH17106.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] gi|330985218|gb|EGH83321.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008643|gb|EGH88699.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 272 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 92/225 (40%), Gaps = 2/225 (0%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 +++ P + + +R C A+A S+ ++ ++ + + + L++ EL +G Sbjct: 29 GVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLIG 88 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + GLL + + G +I G ++ + + + +L+ ++ + ++ Sbjct: 89 LLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLITLFFMSG 148 Query: 141 FHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 + SY P+ + L +S + +L I + + +P L ++ ++ Sbjct: 149 GFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLIAMLITDL 208 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + L+++ P + I+ +S P ++ + + I ++ Sbjct: 209 MLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIDQL 253 >gi|171321461|ref|ZP_02910407.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] gi|171093259|gb|EDT38461.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria MEX-5] Length = 288 Score = 87.0 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L + A+ E Sbjct: 49 RLLVIMTILPATADNVLKGPLRSGAAAIWCLFVA---CGQQALIPQLRGAFLVIACAKEA 105 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L+G + + + W Sbjct: 106 VIGLVLGIAASTVFWAAEAIGTYVDDVAGFNNVQMQNPSSGTQTSLMATLLGQLTIASFW 165 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +SY P+G + F M M+ R+++P + ++ Sbjct: 166 MLGGMTFLLGALYESYAWWPLGSFNPVPAPLLERFAQARLDMLMNMVARIATPMMAMLLL 225 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 226 VDLGLAFVARSAQKLDLMTVSQPLKGAIAVLIVAVLAGSFVSEM 269 >gi|14719867|gb|AAK73231.1| SctT [Burkholderia pseudomallei] gi|48479046|gb|AAT44846.1| putative transmembrane protein [Burkholderia pseudomallei] Length = 240 Score = 87.0 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 5/196 (2%) Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLV---MVELFLGCVHGLLIRVYTLGLQFTGSVISTA 104 ++L FV + + L+ + E +G V G+ ++ G I Sbjct: 21 VILFGSYVAYGQPAGFVQTLHGTPLIVTGLREAVIGVVLGIAASTVFWAIEGAGCYIDDL 80 Query: 105 IGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF 164 G N + TP +L+ + +A W + L +SY PI Sbjct: 81 TGYNNVQMTNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYESYRWWPITLTFPR 140 Query: 165 GNIF--SSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIG 222 + V+ + ++ +L++P + ++ + + G K ++ + +S P Sbjct: 141 MPALIEAFAVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGA 200 Query: 223 LGSLFLCLSIEIIVYQ 238 + L L L + V Q Sbjct: 201 VTVLMLALFVGTFVDQ 216 >gi|261344589|ref|ZP_05972233.1| type III secretion apparatus protein SpaR/YscT/HrcT [Providencia rustigianii DSM 4541] gi|282567503|gb|EFB73038.1| type III secretion apparatus protein SpaR/YscT/HrcT [Providencia rustigianii DSM 4541] Length = 264 Score = 87.0 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 85/226 (37%), Gaps = 5/226 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + +M + L R+ + LP LS + ++ C ++ + P+L Sbjct: 17 QHGLMKIALAWLRIAPVMFFLPFLSNKLLNGGIIKNCVVAYLALGMWPYLSAR---DIDW 73 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + S++ + E+ +G V L++ + + G +I T G + + + + + L Sbjct: 74 AQMSLSEVFLYEICIGIVLALILGLPFMIANIIGELIDTQRGETISSIVDPASGSEASEL 133 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 I I + +Q+ +SY +P N L + + Sbjct: 134 AVFISYIVCMVFLAQGGMYQLANVFAQSYQLLPFAHGFTSFNSLP-LAEWLNKAVVNGVI 192 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L++P + + +++GL ++ PQ+ + +S + + L Sbjct: 193 LTAPIIVTLFISEVALGLYSRFCPQLNAFSLSLAIKSIIAFIVFLL 238 >gi|161502068|ref|YP_001569180.1| hypothetical protein SARI_00085 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863415|gb|ABX20038.1| hypothetical protein SARI_00085 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 263 Score = 87.0 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 5/222 (2%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 RV LP L+ + R + ++ + P + LV+ Sbjct: 20 FARVAPIFFFLPFLNSGVLSGAPRNAIIVLVAMGVWP---HELSEAPPFLSVAMIPLVLQ 76 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E +G + G L+ + G +I G L +S+ ++ + + + + + + + Sbjct: 77 EAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANFLNMFAAVV 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + L KSY E + + L ++SP + ++ Sbjct: 137 YLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQHALVMASPVVLVLLL 194 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 195 SEVFLGLLSRFAPQMNAFAISLTVKSGIAILIMLLYFSPVLP 236 >gi|197122900|ref|YP_002134851.1| type III secretion system inner membrane R protein [Anaeromyxobacter sp. K] gi|196172749|gb|ACG73722.1| type III secretion system inner membrane R protein [Anaeromyxobacter sp. K] Length = 250 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 1/225 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 P L++ R + P L +P +VRL A+A + + + + Sbjct: 4 PLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVH-AGAGSPAVPPPP 62 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 A + + E G + GL R G + + GL + + + Sbjct: 63 GLASLAGAALAETATGLLAGLAARWTLDAALAAGHLAGLSAGLGYSALVDPITGAESSAV 122 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + + ++ + H + LV++ P G + + S + + +R Sbjct: 123 SQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAPDLAELASRAAGQAALSVALAVR 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 L+ P + ++ ++ + + ++ PQ+ + + L L Sbjct: 183 LAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALY 227 >gi|292488069|ref|YP_003530946.1| surface presentation of antigens protein SpaR [Erwinia amylovora CFBP1430] gi|292899280|ref|YP_003538649.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199128|emb|CBJ46242.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291553493|emb|CBA20538.1| Surface presentation of antigens protein SpaR [Erwinia amylovora CFBP1430] Length = 256 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ + R+ +LP L + + +I+ L ++T+ + Sbjct: 11 QHYLLIFAIAYARLAVVFYMLPILGERIFSHLIIKNAIITLTIIGLWPCFETVVIPEQS- 69 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + L++ E +G + ++ + + G ++ G ++ ++ + + L+ Sbjct: 70 ---WYLLLVQESIVGLILATVLCLPFWIVIGLGEILDNQRGASMADNIDPLNGGQNSILS 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ + ++ + + A +SY +P G G + +L + L Sbjct: 127 GLLNFTFGIIFFINNGMCLMLEAFTESYQFLPPGSR-WSGFHWQEAGRVLVIVVESSIML 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 ++P + ++ I +G+ + PQ+ + +S + + Sbjct: 186 AAPVIIVMMIAEILLGVFARYCPQLNPFSLSLTIKSFITFIIFF 229 >gi|167923486|ref|ZP_02510577.1| SctT [Burkholderia pseudomallei BCC215] Length = 340 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|167915642|ref|ZP_02502733.1| SctT [Burkholderia pseudomallei 112] Length = 325 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|167907282|ref|ZP_02494487.1| SctT [Burkholderia pseudomallei NCTC 13177] Length = 331 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|167828890|ref|ZP_02460361.1| SctT [Burkholderia pseudomallei 9] gi|226200037|ref|ZP_03795586.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pakistan 9] gi|225927889|gb|EEH23927.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pakistan 9] Length = 313 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|167743339|ref|ZP_02416113.1| SctT [Burkholderia pseudomallei 14] Length = 319 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|254264921|ref|ZP_04955786.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710a] gi|254215923|gb|EET05308.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710a] Length = 328 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|254301362|ref|ZP_04968806.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei 406e] gi|157811137|gb|EDO88307.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei 406e] Length = 322 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|53722652|ref|YP_111637.1| type III secretion protein [Burkholderia pseudomallei K96243] gi|167820521|ref|ZP_02452201.1| SctT [Burkholderia pseudomallei 91] gi|52213066|emb|CAH39104.1| putative type III secretion protein [Burkholderia pseudomallei K96243] Length = 343 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|254193912|ref|ZP_04900344.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei S13] gi|169650663|gb|EDS83356.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei S13] Length = 358 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|167724009|ref|ZP_02407245.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei DM98] gi|167742977|ref|ZP_02415751.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 14] gi|167820150|ref|ZP_02451830.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 91] gi|167828526|ref|ZP_02459997.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 9] gi|167849984|ref|ZP_02475492.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei B7210] gi|167898590|ref|ZP_02485991.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 7894] gi|167906933|ref|ZP_02494138.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei NCTC 13177] gi|167915292|ref|ZP_02502383.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 112] gi|217425322|ref|ZP_03456816.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 576] gi|254186706|ref|ZP_04893222.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pasteur 52237] gi|254193813|ref|ZP_04900245.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei S13] gi|254301614|ref|ZP_04969058.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 406e] gi|157810820|gb|EDO87990.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 406e] gi|157934390|gb|EDO90060.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pasteur 52237] gi|169650564|gb|EDS83257.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei S13] gi|217391573|gb|EEC31601.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 576] Length = 265 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 5/196 (2%) Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLV---MVELFLGCVHGLLIRVYTLGLQFTGSVISTA 104 ++L FV + + L+ + E +G V G+ ++ G I Sbjct: 46 VILFGSYVAYGQPAGFVQTLHGTPLIVTGLREAVIGVVLGIAASTVFWAIEGAGCYIDDL 105 Query: 105 IGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF 164 G N + TP +L+ + +A W + L +SY PI Sbjct: 106 TGYNNVQMTNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYESYRWWPITLTFPR 165 Query: 165 GNIF--SSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIG 222 + V+ + ++ +L++P + ++ + + G K ++ + +S P Sbjct: 166 MPALIEAFAVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGA 225 Query: 223 LGSLFLCLSIEIIVYQ 238 + L L L + V Q Sbjct: 226 VTVLMLALFVGTFVDQ 241 >gi|254185073|ref|ZP_04891662.1| SctT [Burkholderia pseudomallei 1655] gi|184215665|gb|EDU12646.1| SctT [Burkholderia pseudomallei 1655] Length = 370 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|237509083|ref|ZP_04521798.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei MSHR346] gi|235001288|gb|EEP50712.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei MSHR346] Length = 328 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|217422557|ref|ZP_03454060.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei 576] gi|217394788|gb|EEC34807.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei 576] Length = 319 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|167898949|ref|ZP_02486350.1| SctT [Burkholderia pseudomallei 7894] Length = 334 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|167724374|ref|ZP_02407610.1| SctT [Burkholderia pseudomallei DM98] Length = 328 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|126455595|ref|YP_001076240.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106a] gi|242311306|ref|ZP_04810323.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106b] gi|126229363|gb|ABN92776.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106a] gi|242134545|gb|EES20948.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106b] Length = 322 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|126444370|ref|YP_001063284.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 668] gi|126223861|gb|ABN87366.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 668] Length = 322 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|312171381|emb|CBX79640.1| Surface presentation of antigens protein spaR [Erwinia amylovora ATCC BAA-2158] Length = 272 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 87/245 (35%), Gaps = 8/245 (3%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFV 64 + ++ + R+ LLP L + + + I L P + Sbjct: 11 QHGVLIFTMAYARLAIVFYLLPVLGERVLSNLIIKNTIIALIIIGLWP-----CYAEVLN 65 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + L++ E +G + + + V + G ++ G + S+ + + + L Sbjct: 66 PEQGWLILLLKECVIGLILAMTLCVPFWIVISLGEILDNQRGATISDSIDPVNGVQSSTL 125 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + + + + LV+SY P G L + + + +L + Sbjct: 126 SGFLNFAFGAIFFASGGMSSLMELLVQSYHVFPRGSNLVDFH-WQAVGGLLMVLAKGSIM 184 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGS-LFLCLSIEIIVYQFSHSF 243 LS+P + +V I +G+ + PQ+ + +S + +FL + I + H F Sbjct: 185 LSAPVMIVMMVAEILLGVFARFCPQLNPFSLSLTIKSFIAFTVFLFYGFQAISQKPLHLF 244 Query: 244 LYGFF 248 FF Sbjct: 245 SIAFF 249 >gi|134281982|ref|ZP_01768688.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei 305] gi|134246511|gb|EBA46599.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei 305] Length = 310 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACAKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P+G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|13475307|ref|NP_106871.1| translocation protein in type III secretion system, hrcT [Mesorhizobium loti MAFF303099] gi|14026058|dbj|BAB52657.1| translocation protein in type III secretion system; HrcT [Mesorhizobium loti MAFF303099] Length = 272 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 4/198 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKLVMV 75 R +M+LP + S +R C A+ F + L + D + L + L + Sbjct: 27 ARAIGIMMILPVFTRSQTDGLIRGCLAVGFGLPCLAHVSDALQALDPETRLIEVALLGLK 86 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM-GISDSLAETPLNSLIGIIGLL 134 E+ +G + G + + GLQ G I G+ ++ + + + + +GI + Sbjct: 87 EVLVGALLGTFLGIPLWGLQAAGEFIDNQRGVTNPSAPTDPATNSQASAMGVFLGITAIA 146 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + AL SY P+ + + +L L +S P +FF Sbjct: 147 IFVASGGLETLIGALYGSYLIWPVYKFYPTLSTQGAMEVLGLLDQIMRTALLVSGPVVFF 206 Query: 193 YIVFNISIGLLNKLVPQI 210 + ++S LL + PQ Sbjct: 207 MTLIDVSFMLLRRFAPQF 224 >gi|237800779|ref|ZP_04589240.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023637|gb|EGI03694.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 271 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 91/225 (40%), Gaps = 2/225 (0%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 +++ P + + +R C A+A S+ ++ ++ + + + L++ EL +G Sbjct: 29 GVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLIG 88 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + GLL + + G +I G ++ + + + +L+ ++ + ++ Sbjct: 89 LLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLITLFFMSG 148 Query: 141 FHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 + SY P+ + L S + +L I + + +P L ++ ++ Sbjct: 149 GFILMVDGYYHSYQLWPVTEFTPLFSSAALMSILAILDQVMRIGVLMVAPLLIAMLITDL 208 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + L+++ P + I+ +S P S+ + + I ++ Sbjct: 209 MLAYLSRMAPSLHIFDLSLPVKNLFFSVLMVVYIGFLIPVMIDQL 253 >gi|188534035|ref|YP_001907832.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029077|emb|CAO96945.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 242 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 7/222 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQ-VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 M + R+ LLP L + V+ I L P + V Sbjct: 1 MIYVVAYARLAIVFYLLPILGDRILSNLIVKNSIISLVIIGLWP-----CYEPDIVTERG 55 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 +++ E F+G + ++ + + G ++ G + + L++ Sbjct: 56 LISVLVEECFMGLLLATVLCIPFWIVIALGDILDNQRGATINDIFDPLSGGQNSVLSAFF 115 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 + + + + AL+KSY +P G +++ N +S +L + L++P Sbjct: 116 NFSFGMIFFSSNGMLLLMNALMKSYQYLPQGHDISGVN-WSKAGKLLVELVECSIMLAAP 174 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + +V I +G+ + PQ+ + +S + + L Sbjct: 175 VIIVLLVTEILLGVFARYCPQLNAFSLSLTLKSFITFIIFLL 216 >gi|326794360|ref|YP_004312180.1| type III secretion protein SpaR/YscT/HrcT [Marinomonas mediterranea MMB-1] gi|326545124|gb|ADZ90344.1| type III secretion protein SpaR/YscT/HrcT [Marinomonas mediterranea MMB-1] Length = 264 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 91/233 (39%), Gaps = 4/233 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++S+ L + R+ C++L+P S + +R + ++++ P + + L + + Sbjct: 12 WVLSISLGMARLYPCLLLIPLFSFKELKGMLRYALVVVLALMVAPGIKEA--LPHDHSWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + E LG + G+++ + + G + G + + S TPL L Sbjct: 70 TLLTLYLKETALGMLLGIILAIPFWLFESVGGLFDNQRGALMGGQLNPSLGQDFTPLGFL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + SY P F ++++L+ F ++ Sbjct: 130 FKQTLIVLMITTGSFEAMLQVIWDSYVIWPPTVWYPTPTPEGFEIYLSLLRDAFTDLILY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 ++P + + + +L+ PQ+ + ++ P G FL I + Y Sbjct: 190 AAPLVALLLFVEFGVSVLSLYSPQLQAFVLAMPIKCLAGLGFLIFYIPTLFYL 242 >gi|56404018|ref|NP_858288.2| Spa29, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|74314953|ref|YP_313371.1| Spa29 [Shigella sonnei Ss046] gi|82524598|ref|YP_406193.1| Spa29 [Shigella dysenteriae Sd197] gi|60416402|sp|P0A1M7|SPAR_SHISO RecName: Full=Surface presentation of antigens protein spaR; AltName: Full=Spa29 protein gi|303895|dbj|BAA02831.1| spa29 [Shigella flexneri] gi|915196|dbj|BAA09164.1| ORF24 [Shigella sonnei] gi|32307048|gb|AAP79018.1| Spa29 [Shigella flexneri] gi|56383096|gb|AAL72306.2| Spa29, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|73858430|gb|AAZ91136.1| Spa29 [Shigella sonnei Ss046] gi|81243996|gb|ABB64705.1| Spa29 [Shigella dysenteriae Sd197] gi|281603910|gb|ADA76893.1| Spa29, component of the Mxi-Spa secretion machinery [Shigella flexneri 2002017] gi|320182866|gb|EFW57741.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella flexneri CDC 796-83] gi|333008533|gb|EGK28002.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella flexneri K-218] gi|333017442|gb|EGK36758.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella flexneri K-227] gi|333020361|gb|EGK39625.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella flexneri K-304] Length = 256 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 5/230 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + R+ LP L+ I +R+ + L+ I F + L+ Sbjct: 20 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVASGLITSGKVDIGSSVFE---HVYFLMF 76 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ +G + + + GS+I G L +S+ ++ + + L + + Sbjct: 77 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ++ SY P+ + +F S+ + L + L+SP + + Sbjct: 137 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--VSNILTFLTLLASQAVILASPVMIVLL 194 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + +G+L++ PQ+ + +S L + + I + FL Sbjct: 195 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 244 >gi|110632474|ref|YP_672682.1| type III secretion protein SpaR/YscT/HrcT [Mesorhizobium sp. BNC1] gi|110283458|gb|ABG61517.1| type III secretion protein SpaR/YscT/HrcT [Chelativorans sp. BNC1] Length = 271 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 74/231 (32%), Gaps = 5/231 (2%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF---VNRAYYSKL 72 + R+ + P S +P VR A S ++ L + + Y L Sbjct: 26 MTRLSGFFAISPFFSRKSMPRIVRFGTMAAMSFPIVSSLAAEVGTEIARQGGALPSYPVL 85 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ EL LG G L+ + GL+ G ++ T G + S TP + + Sbjct: 86 IVKELALGLFLGTLVWLPIRGLELAGVILDTQRGSTQAEDYDVVFSAQTTPTAIFLSQLF 145 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + V +S P L FV + L L P Sbjct: 146 AGFFFAAGGFLMVMTIFYQSIAIWPPMDLLPAFTRETLLLFVRFAGMVYFTALVLVLPIS 205 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 F ++ +I I L + P + + P + + L I ++ + Sbjct: 206 GFMLLSDICIAFLARSAPSLNALTLGMPVKSAVLLVMLIFYIALLYPKLWE 256 >gi|166999376|ref|ZP_02265215.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei PRL-20] gi|243064450|gb|EES46636.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei PRL-20] Length = 343 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|254176645|ref|ZP_04883303.1| putative type III secretion inner membrane protein SctT [Burkholderia mallei ATCC 10399] gi|160697687|gb|EDP87657.1| putative type III secretion inner membrane protein SctT [Burkholderia mallei ATCC 10399] Length = 340 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|126445934|ref|YP_001077826.1| putative type III secretion inner membrane protein SctT [Burkholderia mallei NCTC 10247] gi|126238788|gb|ABO01900.1| putative type III secretion inner membrane protein SctT [Burkholderia mallei NCTC 10247] Length = 364 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|194435374|ref|ZP_03067573.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella dysenteriae 1012] gi|194416384|gb|EDX32554.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella dysenteriae 1012] Length = 256 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 5/230 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + R+ LP L+ I +R+ + L+ I F + L+ Sbjct: 20 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVASGLITSGKVDIGSSVFE---HVYFLMF 76 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ +G + + + GS+I G L +S+ ++ + + L + + Sbjct: 77 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ++ SY P+ + +F S+ + L + L+SP + + Sbjct: 137 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--VSNILTFLTLLASQAVILASPVMIVLL 194 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + +G+L++ PQ+ + +S L + + I + FL Sbjct: 195 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIVFICSSTIYFSKVQFFL 244 >gi|254193637|ref|ZP_04900069.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei S13] gi|169650388|gb|EDS83081.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei S13] Length = 256 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 19 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 73 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 74 AGVALTEAAAGVVLGVALSLPFWVATVVGELIDNQRGATISDSIDPATGVEASALAPFVS 133 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 134 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 192 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 232 >gi|60415917|sp|P0A1M6|SPAR_SHIFL RecName: Full=Surface presentation of antigens protein spaR; AltName: Full=Spa29 protein gi|12329099|emb|CAC05830.1| Spa29, component of the Mxi-Spa secretion machinery [Shigella flexneri] Length = 256 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 5/230 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + R+ LP L+ I +R+ + L+ I F + L+ Sbjct: 20 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVASGLITSGKVDIGSSVFE---HVYFLMF 76 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ +G + + + GS+I G L +S+ ++ + + L + + Sbjct: 77 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 136 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ++ SY P+ + +F S+ + L + L+SP + + Sbjct: 137 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--ISNILTFLTLLASQAVILASPVMIVLL 194 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + +G+L++ PQ+ + +S L + + I + FL Sbjct: 195 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 244 >gi|323530313|ref|YP_004232465.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp. CCGE1001] gi|323387315|gb|ADX59405.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp. CCGE1001] Length = 271 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 4/230 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + L P + + VR + FS + + L + + + E Sbjct: 27 VRLFVMLYLFPPTADGILQGVVRNGLVLLFSSFIA--YGQPVSLYTSLTGTALVVIGLRE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G + G + G + G N TP +L+ + +A Sbjct: 85 AAIGLLLGFAASTVFWVAEGAGIYVDDLAGYNNVQITNPLREEQSTPTGTLLAQVASVAF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFM-IMLRLSSPFLFFYI 194 W + AL +SY P+ N+ SFV + M +L++P + + Sbjct: 145 WTFGGMTFLLGALYESYHWWPLTAATPVPANVLESFVLQQTDSLMQTTAKLAAPMMLMLL 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + + G K ++ + +S P L + L L + I V Q + Sbjct: 205 LVDFAFGFAAKSAQKLELMTLSQPVKGALTVMMLALFVGIFVDQVRDQLV 254 >gi|254359177|ref|ZP_04975449.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei 2002721280] gi|148028364|gb|EDK86324.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei 2002721280] Length = 337 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|124383223|ref|YP_001025742.1| putative type III secretion inner membrane protein SctT [Burkholderia mallei NCTC 10229] gi|261827184|gb|ABN00025.2| putative type III secretion inner membrane protein SctT [Burkholderia mallei NCTC 10229] Length = 328 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|53716409|ref|YP_106212.1| putative type III secretion inner membrane protein SctT [Burkholderia mallei ATCC 23344] gi|67640498|ref|ZP_00439302.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia mallei GB8 horse 4] gi|254205057|ref|ZP_04911410.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei JHU] gi|52422379|gb|AAU45949.1| putative type III secretion inner membrane protein SctT [Burkholderia mallei ATCC 23344] gi|147754643|gb|EDK61707.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei JHU] gi|238521218|gb|EEP84671.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia mallei GB8 horse 4] Length = 334 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ + E Sbjct: 29 RLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGAFLMIACVKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +S+ P G + F M M+ R+++P + ++ Sbjct: 146 LLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + + + ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEM 249 >gi|53722419|ref|YP_111404.1| type III secretion-associated protein [Burkholderia pseudomallei K96243] gi|76819022|ref|YP_335579.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710b] gi|126445338|ref|YP_001062983.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 668] gi|126456304|ref|YP_001075929.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106a] gi|134282661|ref|ZP_01769365.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 305] gi|167923126|ref|ZP_02510217.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei BCC215] gi|226199070|ref|ZP_03794632.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pakistan 9] gi|237509184|ref|ZP_04521899.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei MSHR346] gi|242311871|ref|ZP_04810888.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106b] gi|254183791|ref|ZP_04890383.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1655] gi|254262526|ref|ZP_04953391.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710a] gi|52212833|emb|CAH38867.1| putative type III secretion-associated protein [Burkholderia pseudomallei K96243] gi|76583495|gb|ABA52969.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710b] gi|126224829|gb|ABN88334.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 668] gi|126230072|gb|ABN93485.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106a] gi|134246218|gb|EBA46308.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 305] gi|184214324|gb|EDU11367.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1655] gi|225928845|gb|EEH24870.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pakistan 9] gi|235001389|gb|EEP50813.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei MSHR346] gi|242135110|gb|EES21513.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106b] gi|254213528|gb|EET02913.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710a] Length = 272 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 5/196 (2%) Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLV---MVELFLGCVHGLLIRVYTLGLQFTGSVISTA 104 ++L FV + + L+ + E +G V G+ ++ G I Sbjct: 53 VILFGSYVAYGQPAGFVQTLHGTPLIVTGLREAVIGVVLGIAASTVFWAIEGAGCYIDDL 112 Query: 105 IGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF 164 G N + TP +L+ + +A W + L +SY PI Sbjct: 113 TGYNNVQMTNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYESYRWWPITLTFPR 172 Query: 165 GNIF--SSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIG 222 + V+ + ++ +L++P + ++ + + G K ++ + +S P Sbjct: 173 MPALIEAFAVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGA 232 Query: 223 LGSLFLCLSIEIIVYQ 238 + L L L + V Q Sbjct: 233 VTVLMLALFVGTFVDQ 248 >gi|293416349|ref|ZP_06658988.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B185] gi|291431705|gb|EFF04688.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B185] Length = 257 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 5/224 (2%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L RV +LP L+ + VR M + + PF + V L+ Sbjct: 18 LGFARVAPVFFILPFLNNGVLSGVVRTAVIMLVVLGMTPFGPAEREA---VMNILGWPLL 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 + E F+G V G L+ G + G L +S+ ++ + + + + + + Sbjct: 75 LREAFIGIVLGCLLSWPFWVFHAIGCIFDNQRGATLSSSIDPANGVDTSEMATFMNLFSA 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + + L SY + + ++ L L+SP L Sbjct: 135 VVYLQGGGMQMMLETLRHSYQVCGLTTGCMPA--LPLLLGIIGKITARALVLASPVLAVL 192 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 ++ I +GLL++ PQ+ + IS L L + ++ Sbjct: 193 LLGEIMLGLLSRFAPQMNAFAISLTVKSLLALFILLIYFSPVLS 236 >gi|53716464|ref|YP_106124.1| type III secretion system protein BsaY [Burkholderia mallei ATCC 23344] gi|67641435|ref|ZP_00440214.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia mallei GB8 horse 4] gi|167004214|ref|ZP_02269981.1| type III secretion system protein BsaY [Burkholderia mallei PRL-20] gi|167724224|ref|ZP_02407460.1| type III secretion system protein BsaY [Burkholderia pseudomallei DM98] gi|167743199|ref|ZP_02415973.1| type III secretion system protein BsaY [Burkholderia pseudomallei 14] gi|167828745|ref|ZP_02460216.1| type III secretion system protein BsaY [Burkholderia pseudomallei 9] gi|167850200|ref|ZP_02475708.1| type III secretion system protein BsaY [Burkholderia pseudomallei B7210] gi|167898807|ref|ZP_02486208.1| type III secretion system protein BsaY [Burkholderia pseudomallei 7894] gi|167907135|ref|ZP_02494340.1| type III secretion system protein BsaY [Burkholderia pseudomallei NCTC 13177] gi|167915489|ref|ZP_02502580.1| type III secretion system protein BsaY [Burkholderia pseudomallei 112] gi|217425207|ref|ZP_03456702.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 576] gi|254175968|ref|ZP_04882626.1| type III secretion system protein BsaY [Burkholderia mallei ATCC 10399] gi|254200990|ref|ZP_04907355.1| type III secretion system protein BsaY [Burkholderia mallei FMH] gi|254204954|ref|ZP_04911307.1| type III secretion system protein BsaY [Burkholderia mallei JHU] gi|52422434|gb|AAU46004.1| type III secretion system protein BsaY [Burkholderia mallei ATCC 23344] gi|147748602|gb|EDK55677.1| type III secretion system protein BsaY [Burkholderia mallei FMH] gi|147754540|gb|EDK61604.1| type III secretion system protein BsaY [Burkholderia mallei JHU] gi|160697010|gb|EDP86980.1| type III secretion system protein BsaY [Burkholderia mallei ATCC 10399] gi|217391812|gb|EEC31839.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 576] gi|238522375|gb|EEP85820.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia mallei GB8 horse 4] gi|243060409|gb|EES42595.1| type III secretion system protein BsaY [Burkholderia mallei PRL-20] Length = 256 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 19 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 73 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 74 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 133 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 134 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 192 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 232 >gi|256019341|ref|ZP_05433206.1| putative Type III secretion protein EpaR [Shigella sp. D9] gi|300820659|ref|ZP_07100810.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 119-7] gi|331678845|ref|ZP_08379519.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli H591] gi|332280455|ref|ZP_08392868.1| type III secretion apparatus protein EpaR [Shigella sp. D9] gi|300526923|gb|EFK47992.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli MS 119-7] gi|331073675|gb|EGI44996.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli H591] gi|332102807|gb|EGJ06153.1| type III secretion apparatus protein EpaR [Shigella sp. D9] Length = 255 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPIL 235 >gi|284007675|emb|CBA73398.1| type III secretion sytem SpaR,YscT,HrcT,EscT [Arsenophonus nasoniae] Length = 254 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 95/236 (40%), Gaps = 4/236 (1%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 ++ + +++ LI R+ +LP LS + L ++L L I + Sbjct: 5 LALQNSLLNYLLIFARLAPLFFMLPFLSDRILTN---LSLKGIIILLLTLCLSPLIVMPT 61 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 + + + + L VELF+G G+L+ G I G ++ + + + Sbjct: 62 WQSTSQFIALSAVELFIGLTMGILMATPFWLASAIGEFIDNQRGASIGDMLDPTTGSESS 121 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 L SLI + + + +++SY +PIG +N+ ++F + L M+ Sbjct: 122 SLASLINMFCVGWFLNQGGMIEFVATIIESYQQLPIGCPINYVDLF-ALGKWLTRFIMLA 180 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 + LS+P L + I +G+ + PQ+ + +S + L + + Q Sbjct: 181 ITLSAPLLIALFMLEIGLGVYSLFCPQLNAFSLSLTLKSIVAFGLLFILFNTTLPQ 236 >gi|193063522|ref|ZP_03044611.1| type III secretion apparatus protein EpaR [Escherichia coli E22] gi|218555410|ref|YP_002388323.1| putative Type III secretion protein EpaR [Escherichia coli IAI1] gi|260845523|ref|YP_003223301.1| type III secretion protein EpaR [Escherichia coli O103:H2 str. 12009] gi|192930799|gb|EDV83404.1| type III secretion apparatus protein EpaR [Escherichia coli E22] gi|218362178|emb|CAQ99794.1| putative Type III secretion protein EpaR [Escherichia coli IAI1] gi|257760670|dbj|BAI32167.1| type III secretion protein EpaR [Escherichia coli O103:H2 str. 12009] Length = 255 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWMFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPIL 235 >gi|262360424|gb|ACY57145.1| type III secretion apparatus protein [Yersinia pestis D106004] Length = 185 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 1/160 (0%) Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G + + + G +I T G + T + + L I + + Sbjct: 1 MVMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISG 60 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNIS 199 +QV AL SY ++PIGQ + F+ Q F + L + P L ++ ++S Sbjct: 61 GFNQVLAALYGSYDSLPIGQGIQPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLS 120 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 +GL+N+ Q+ ++F++ P L L +S+ ++ + Sbjct: 121 LGLINRSARQLNVFFLAMPIKSALALFLLLISLPYGLHHY 160 >gi|167820373|ref|ZP_02452053.1| type III secretion system protein BsaY [Burkholderia pseudomallei 91] gi|254186854|ref|ZP_04893370.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pasteur 52237] gi|157934538|gb|EDO90208.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pasteur 52237] Length = 256 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 19 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 73 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 74 AGVALTEAAAGVVLGVALSLPFWVATALGELIDNQRGATISDSIDPATGVEASALAPFVS 133 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 134 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 192 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 232 >gi|320324519|gb|EFW80596.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 272 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 91/225 (40%), Gaps = 2/225 (0%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 +++ P + + +R C A+A S+ ++ ++ + + + L++ EL +G Sbjct: 29 GVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLIG 88 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + GLL + + G +I ++ + + + +L+ ++ + ++ Sbjct: 89 LLIGLLFGIPFWAAEVAGELIDLQRDSTMEQLVDPLGQGEASVMATLLTVMLITLFFMSG 148 Query: 141 FHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 + SY P+ + L +S + +L I + + +P L ++ ++ Sbjct: 149 GFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLIAMLITDL 208 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + L+++ P + I+ +S P ++ + + I ++ Sbjct: 209 MLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIDQL 253 >gi|170690595|ref|ZP_02881762.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia graminis C4D1M] gi|170145030|gb|EDT13191.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia graminis C4D1M] Length = 271 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 4/230 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + L P + + VR + FS + + L + + + E Sbjct: 27 VRLFVMLYLFPPTADGILQGVVRNGVVLLFSSFIA--YGQPVSLYTSLTGTALVVIGLRE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G + G + G + G N TP +L+ + +A Sbjct: 85 AAIGLLLGFAASTVFWVAEGAGIYVDDLAGYNNVQITNPLREEQSTPTGTLLAQVASVAF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFM-IMLRLSSPFLFFYI 194 W + AL +SY P+ N+ SFV + M +L++P + + Sbjct: 145 WTFGGMTFLLGALYESYHWWPLSAATPVPANVLESFVLQQTDSLMQTTAKLAAPMMLMLL 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + + G K ++ + +S P L + L L + I V Q + Sbjct: 205 LVDFAFGFAAKSAQKLELMTLSQPVKGALTVMMLALFVGIFVDQVRDQLV 254 >gi|124382801|ref|YP_001025866.1| type III secretion system protein BsaY [Burkholderia mallei NCTC 10229] gi|126444373|ref|YP_001063159.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 668] gi|126446524|ref|YP_001077951.1| type III secretion system protein BsaY [Burkholderia mallei NCTC 10247] gi|126456666|ref|YP_001076110.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106a] gi|226195966|ref|ZP_03791552.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pakistan 9] gi|237508057|ref|ZP_04520772.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei MSHR346] gi|242312170|ref|ZP_04811187.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106b] gi|254301458|ref|ZP_04968902.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 406e] gi|126223864|gb|ABN87369.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 668] gi|126230434|gb|ABN93847.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106a] gi|126239378|gb|ABO02490.1| type III secretion system protein BsaY [Burkholderia mallei NCTC 10247] gi|157811357|gb|EDO88527.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 406e] gi|225931859|gb|EEH27860.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei Pakistan 9] gi|235000262|gb|EEP49686.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia pseudomallei MSHR346] gi|242135409|gb|EES21812.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1106b] gi|261826986|gb|ABM99918.2| type III secretion system protein BsaY [Burkholderia mallei NCTC 10229] Length = 247 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 10 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 64 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 65 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 125 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 183 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 223 >gi|13449102|ref|NP_085318.1| Type III secretion protein [Shigella flexneri 5a] gi|13310650|gb|AAK18474.1|AF348706_163 Type III secretion protein [Shigella flexneri 5a] Length = 257 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 5/230 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + R+ LP L+ I +R+ + L+ I F + L+ Sbjct: 21 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVASGLITSGKVDIGSSVFE---HVYFLMF 77 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ +G + + + GS+I G L +S+ ++ + + L + + Sbjct: 78 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 137 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ++ SY P+ + +F S+ + L + L+SP + + Sbjct: 138 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--ISNILTFLTLLASQAVILASPVMIVLL 195 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + +G+L++ PQ+ + +S L + + I + FL Sbjct: 196 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 245 >gi|167840166|ref|ZP_02466850.1| type III secretion system protein BsaY [Burkholderia thailandensis MSMB43] Length = 247 Score = 84.7 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 10 AIAIAYARVAPVFYLLPFLNDRTIVNGVVKNTIVFAVILGLWPSF-----AHPHLQGGAL 64 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 65 AGVALTEAAAGVVLGVALSLPFWVAAAVGELIDNQRGATISDSIDPATGVEASALAPFVS 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 125 LFYAAAFLQQGGMLTIVGALESSYATVPAGALFSVD--LPRVGALLTDLVAHGLALAAPV 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L + + +GL ++ PQ+ + +S + L Sbjct: 183 LIVMFLTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 223 >gi|167588154|ref|ZP_02380542.1| SctT [Burkholderia ubonensis Bu] Length = 268 Score = 84.7 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 5/224 (2%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R+ + +LP + + + +R A + + + L ++ A+ E Sbjct: 29 RLLVIMTILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALMPQLHGAFLMITCAKEA 85 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 +G V G+ + G+ + G N S + + +L G + + + W Sbjct: 86 VIGLVLGIAASTVFWAAEAIGTYVDDLAGFNNVQMQNPSSGTQTSLMATLFGQLTIASFW 145 Query: 138 VIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYIV 195 ++ + AL +SY P+G + F M M+ R+++P + ++ Sbjct: 146 MLGGMTFLLGALYESYAWWPLGSFDPVPAPLLELFAQARIDMLMNMVARIATPMMAMLLL 205 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ + +++ ++ + +S P + L + + V + Sbjct: 206 VDLGLAFVSRSAQKLDLMSVSQPLKGAIAVLIVAVLAGSFVSEM 249 >gi|307725649|ref|YP_003908862.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp. CCGE1003] gi|307586174|gb|ADN59571.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp. CCGE1003] Length = 271 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 4/230 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + L P + + VR + FS + + L ++ + + E Sbjct: 27 VRLFVVLYLFPPTADGILQGVVRNGVVLLFSSFIA--YGQPVSLYTSLSGTALVVIGLRE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G + G + G + G N TP +L+ + +A Sbjct: 85 AAIGLLLGFAASTVFWVAEGAGIYVDDLAGYNNVQITNPLREEQSTPTGTLLAQVASVAF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFM-IMLRLSSPFLFFYI 194 W + AL +SY P+ N+ SFV + M +L++P + + Sbjct: 145 WTFGGMTFLLGALYESYHWWPLTAATPVPANVLESFVLQQTDSLMQTTAKLAAPMMLMLL 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + + G K ++ + +S P L + L L + I V Q + Sbjct: 205 LVDFAFGFAAKSAQKLELMTLSQPVKGALTVMMLALFVGIFVDQVRDQLV 254 >gi|134282106|ref|ZP_01768812.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 305] gi|134246635|gb|EBA46723.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 305] Length = 251 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 14 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 68 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 69 AGVALTETAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 128 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 129 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 187 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 227 >gi|304558281|gb|ADM40945.1| EsaT [Edwardsiella tarda FL6-60] Length = 259 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 2/232 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + + R ++++P + + + +R A+ ++ LP L + +Y L Sbjct: 13 IAMMRPLGIMLIMPLFNSAMLGGALIRNALALMAALPALPQLAALVLPSPLQAPLHYGGL 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ EL LG + G + L G +I T G ++ +P+ L + Sbjct: 73 LLGELVLGLLLGFSAALPLWALNMAGFIIDTMRGASIAVLFNPLLGEQSSPMGVLFSQLV 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFLF 191 + V H + AL SYG +P GQ +G F + ++ + + L S P + Sbjct: 133 GVLFIVGGGFHALLAALFSSYGDLPPGQYWLWGRGFIPLLMHLWHLLYTLALSFSMPAMV 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ ++++G +N+ V Q+ ++ +S P + L L +S+ + F Sbjct: 193 MMVLVDLALGFINRSVQQLNVFTLSMPIKSAMVLLMLIISLPFALDGVQALF 244 >gi|254185169|ref|ZP_04891758.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1655] gi|184215761|gb|EDU12742.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1655] Length = 247 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 10 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTVVFAIILGLWPSF-----AHPPLQGGAL 64 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 65 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 124 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 125 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 182 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 183 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 223 >gi|76819134|ref|YP_335734.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710b] gi|167923334|ref|ZP_02510425.1| type III secretion system protein BsaY [Burkholderia pseudomallei BCC215] gi|254265372|ref|ZP_04956237.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710a] gi|76583607|gb|ABA53081.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710b] gi|254216374|gb|EET05759.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia pseudomallei 1710a] Length = 251 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 14 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 68 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 69 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 128 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 129 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 187 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 227 >gi|325917023|ref|ZP_08179262.1| HrcT protein [Xanthomonas vesicatoria ATCC 35937] gi|325536774|gb|EGD08531.1| HrcT protein [Xanthomonas vesicatoria ATCC 35937] Length = 276 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 6/211 (2%) Query: 1 MTISPEIIMMSLFLIVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 + +S + + + L +C RV +LP + +P R S + Sbjct: 9 LALSSQGVSLLTLLALCGVRVFVMFFVLPATAQDSLPGMARNGVIYVLSSFIA--YGQPA 66 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 D + LV E F+G + G + G +I G N Sbjct: 67 DALARIEATGLVGLVFKEAFIGLLIGFAASTVFWVAESVGLLIDDVAGYNNVQMTNPLSG 126 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQ 176 TP+++++ + +++ + + + AL +S+ P+ Q + + + Sbjct: 127 EQSTPVSTVLMQLAIVSFYALGGMLMLLGALFESFRWWPLSQLTPDMSAVSETFVIQQTD 186 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 +++LS+P L ++ +++IG + + Sbjct: 187 GMMAAIVKLSAPLLLVLVLVDLAIGFVARAA 217 >gi|167567956|ref|ZP_02360872.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia oklahomensis EO147] gi|167573170|ref|ZP_02366044.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia oklahomensis C6786] Length = 275 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 4/224 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + VR + S + ++ A + E Sbjct: 27 VRLFVVMSIFPPTADGLSQGVVRNAIVLLLSSYVA--YGQPAGFAQTLHGAPLIVTGLRE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G V G+ ++ G I G N + TP L+ I +A Sbjct: 85 SVIGIVLGVAASTVFWAVEGAGCYIDDLTGYNNVQITNPARDEQSTPTALLLAHIATVAF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLSSPFLFFYI 194 W + + L +SY PI G + V+ + ++ +L++P + + Sbjct: 145 WTLGGMTFLLDTLYESYRWWPIALASPRGPELLEAFAVHQTDSLMQMVAKLAAPMMLILL 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 + + + G K ++ +S P + L L L + + V Q Sbjct: 205 LIDCAFGFAAKSASKLDFMGLSQPVKGAMTVLMLALFVGMFVDQ 248 >gi|53722556|ref|YP_111541.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|52212970|emb|CAH39008.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] Length = 251 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L P + Sbjct: 14 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 68 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 69 AGVALTEAAAGVVLGVALSLPFWVATALGELIDNQRGATISDSIDPATGVEASALAPFVS 128 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 129 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 186 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 187 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 227 >gi|61743013|gb|AAX55233.1| EsaT [Edwardsiella tarda] Length = 259 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 93/231 (40%), Gaps = 1/231 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + + R ++++P + + + +R A+ ++ LP L + +Y L Sbjct: 14 IAMMRPLGIMLIMPLFNSAMLGGALIRNALALMAALPALPQLAALVLPSPLQAPLHYGGL 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ EL LG + G + L G +I T G ++ +P+ L + Sbjct: 74 LLGELVLGLLLGFSAALPLWALNMAGFIIDTMRGASIAVLFNPLLGEQSSPMGVLFSQLV 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + V H + AL SYG +P G +++ + + L S P + Sbjct: 134 GVLFIVGGGFHALLAALFSSYGDLPPGSMAVGRGFIPLLMHLWHLLYTLALSFSMPAMVM 193 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ ++++G +N+ V Q+ ++ +S P + L L +S+ + F Sbjct: 194 MVLVDLALGFINRSVQQLNVFTLSMPIKSAMVLLMLIISLPFALDGVQALF 244 >gi|302185356|ref|ZP_07262029.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. syringae 642] gi|256259404|gb|ACU65041.1| HrcT [Pseudomonas syringae pv. syringae] Length = 268 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 3/227 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L + R+ C+ L+P ++ R A +++ P + + + L+ Sbjct: 16 LSMARLYPCMFLVPAFLFKHLKGLPRYAVLAALALIPAPGIGQELSRLGESWTGIFF-LI 74 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E+ LG + GL++ + G ++ G + + TPL+ L + Sbjct: 75 FKEMVLGTLMGLVLYLPFFLFSAVGVLLDNQRGALTGGQLNPALGADVTPLSQLFEETLV 134 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLSSPFLF 191 + L +I + + SY P F ++ ++ TF +L S+PF+ Sbjct: 135 MLLIIIGGLPLLMQVIWDSYQIWPATSWWPALQAQGFEVYLGLVNDTFTHLLLYSAPFIA 194 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 ++ ++ L+ PQ+ ++ ++ P +G FL + + ++ Sbjct: 195 LLLLVEAAMALIGIYSPQLNVFILAMPAKCVIGLAFLVIYLPTLLDL 241 >gi|212711699|ref|ZP_03319827.1| hypothetical protein PROVALCAL_02774 [Providencia alcalifaciens DSM 30120] gi|212685801|gb|EEB45329.1| hypothetical protein PROVALCAL_02774 [Providencia alcalifaciens DSM 30120] Length = 264 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 84/231 (36%), Gaps = 5/231 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTID 59 M + + ++ + R+ + LP LS + ++ C ++ + P+L Sbjct: 12 MYFTFQQGLIKIAFAWLRIAPVMFFLPFLSNKLLNGGIIKNCVVAYLALGMWPYLSTN-- 69 Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119 + S++ + E+ +G V ++ + + G +I T G + + + + Sbjct: 70 -EINWGEMNISEVFLYEVCIGLVLAFILGLPFMIANVIGELIDTQRGETISSIVDPASGS 128 Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179 + L I I + +Q+ +SY +P L Sbjct: 129 EASELAVFISYIVCMVFLAQGGMYQLANVFAQSYQLLPFAHGFTSFKSLP-LGEWLNKAI 187 Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 + + L++P + + +++GL ++ PQ+ + +S + + L Sbjct: 188 VNGVILTAPIIVTLFISEVALGLYSRFCPQLNAFSLSLAIKSIIAFIVFLL 238 >gi|51103001|gb|AAT96148.1| HrcS [Pseudomonas viridiflava] gi|51103056|gb|AAT96202.1| HrcT [Pseudomonas viridiflava] Length = 264 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +MM + L + R+ C+ML+P Y+ +R A S+V P + + + N Sbjct: 11 LMMGMVLAMARLLPCMMLVPAFCFKYLKGPLRYAILAAISMVPAPAISRALGSMD-GNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + S TPL L Sbjct: 70 EIGGLIIKESVLGTLMGLLLYAPFWMFASVGALLDSQRGALSGGQINPSLGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T M+ Sbjct: 130 FQETMIMLVILTGGLSLITQVIWDSYTVWPPTAWLPGMTAEGLDVFLEQLNQTMQHMMLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIVGLYAQQLNVSILAMPAKSMAGLAFLLVYLPTLL 240 >gi|115379105|ref|ZP_01466229.1| type III secretion inner membrane protein, putative [Stigmatella aurantiaca DW4/3-1] gi|115363888|gb|EAU62999.1| type III secretion inner membrane protein, putative [Stigmatella aurantiaca DW4/3-1] Length = 235 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 69/198 (34%), Gaps = 2/198 (1%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 L P L P V+L ++ ++ L + + + L + EL G Sbjct: 1 MAFLCPLLGGQATPSPVKLSLVLSLALFLHLGAGVKVPVP-METLGEWGALALKELVYGT 59 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDF 141 GLL + + G I G + + S+ E+ ++ + + + Sbjct: 60 AVGLLAALPFDAARMGGRFIDLFRGASAEASL-PVAGSRESAAGDVLYQLLVALVVTGGL 118 Query: 142 HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201 +V ++ +G +P+G + + + L + +P + + +G Sbjct: 119 FPRVLSGSLRGFGVVPLGTAVPSEAATGQVFLLAGSALATGLAIGAPIAAASMAVDCWVG 178 Query: 202 LLNKLVPQIPIYFISTPY 219 + ++ PQ+ + + P Sbjct: 179 MASRAAPQMNLQELGAPL 196 >gi|167577441|ref|ZP_02370315.1| type III secretion system protein BsaY [Burkholderia thailandensis TXDOH] Length = 260 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 8/210 (3%) Query: 22 CIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 LLP L+ I V+ A + L P + + + + E G Sbjct: 34 VFYLLPFLNDRTIVNGLVKNTIVFAVIVGLWPSF-----AHPPLRGGALAGVALTEAAAG 88 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G+ + + G +I G + S+ + + + L + + A Sbjct: 89 LVLGVALSLPFWVATAIGELIDNQRGATISDSIDPATGVEASALAPFVSLFYAAAFLQQG 148 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 + AL SY T+P G + +L L L++P L V + + Sbjct: 149 GMLTIVGALESSYATVPAGAPFSAD--LPRVGALLTDLVAHGLALAAPVLIVMFVTDALL 206 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 GL ++ PQ+ + +S + L Sbjct: 207 GLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 236 >gi|187734285|ref|YP_001883218.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella boydii CDC 3083-94] gi|187426781|gb|ACD06056.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella boydii CDC 3083-94] Length = 245 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 5/230 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + R+ LP L+ I +R+ + L+ I F + L+ Sbjct: 9 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVASGLITSGKVDIGSSVFE---HVYFLMF 65 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E+ +G + + + GS+I G L +S+ ++ + + L + + Sbjct: 66 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 125 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 + ++ SY P+ + +F S+ + L + L+SP + + Sbjct: 126 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--VSNILTFLTLLASQAVILASPVMIVLL 183 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 + + +G+L++ PQ+ + +S L + + I + FL Sbjct: 184 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 233 >gi|313610164|gb|EFR85467.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL F2-208] Length = 210 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 65/189 (34%) Query: 54 LWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM 113 + +D+ V E+ G L+ + + + G +I +G + + Sbjct: 4 VATWVDVSGITTLPDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLI 63 Query: 114 GISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN 173 S + +++ ++ + + Y L+KS+ L + Sbjct: 64 DPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLG 123 Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233 L + ++ P + + NI + ++K PQI I+ + I G L ++ Sbjct: 124 TLGFALASAVSIALPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVP 183 Query: 234 IIVYQFSHS 242 I+ F + Sbjct: 184 ILSTVFKNL 192 >gi|269138238|ref|YP_003294938.1| type III secretion apparatus protein [Edwardsiella tarda EIB202] gi|62199650|gb|AAX76924.1| EsaT [Edwardsiella tarda] gi|267983898|gb|ACY83727.1| type III secretion apparatus protein [Edwardsiella tarda EIB202] Length = 260 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 2/232 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + + R ++++P + + + +R A+ ++ LP L + +Y L Sbjct: 14 IAMMRPLGIMLIMPLFNSAMLGGALIRNALALMAALPALPQLAALVLPSPLQAPLHYGGL 73 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ EL LG + G + L G +I T G ++ +P+ L + Sbjct: 74 LLGELVLGLLLGFSAALPLWALNMAGFIIDTMRGASIAVLFNPLLGEQSSPMGVLFSQLV 133 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFLF 191 + V H + AL SYG +P GQ +G F + ++ + + L S P + Sbjct: 134 GVLFIVGGGFHALLAALFSSYGDLPPGQYWLWGRGFIPLLMHLWHLLYTLALSFSMPAMV 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ ++++G +N+ V Q+ ++ +S P + L L +S+ + F Sbjct: 194 MMVLVDLALGFINRSVQQLNVFTLSMPIKSAMVLLMLIISLPFALDGVQALF 245 >gi|167615592|ref|ZP_02384227.1| type III secretion system protein BsaY [Burkholderia thailandensis Bt4] gi|257142143|ref|ZP_05590405.1| type III secretion system protein BsaY [Burkholderia thailandensis E264] Length = 260 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 8/210 (3%) Query: 22 CIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 LLP L+ I V+ A + L P + + + + E G Sbjct: 34 VFYLLPFLNDRTIVNGLVKNTIVFAVIVGLWPSF-----AHPPLRGGALAGIALTEAAAG 88 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G+ + + G +I G + S+ + + + L + + A Sbjct: 89 LVLGVALSLPFWVATAIGELIDNQRGATISDSIDPATGVEASALAPFVSLFYAAAFLQQG 148 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 + AL SY T+P G + +L L L++P L V + + Sbjct: 149 GMLTIVGALESSYATVPAGAPFSAD--LPRVGALLTDLVAHGLALAAPVLIVMFVTDALL 206 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 GL ++ PQ+ + +S + L Sbjct: 207 GLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 236 >gi|291326995|ref|ZP_06126594.2| type III secretion apparatus protein SpaR/YscT/HrcT [Providencia rettgeri DSM 1131] gi|291312159|gb|EFE52612.1| type III secretion apparatus protein SpaR/YscT/HrcT [Providencia rettgeri DSM 1131] Length = 264 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 86/226 (38%), Gaps = 5/226 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 + ++ + L R+ + LLP LS + ++ C ++ L PF + Sbjct: 17 QEGLIKIALAWLRIAPVMFLLPFLSNKLLNGGIIKNCVVAYIALGLWPFFSSY---EIQW 73 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 + + + + E+ +G V L++ + + G +I G + + + + + L Sbjct: 74 DEINFVDVFIYEISIGLVLALILALPFMIANIIGELIDAQRGETISSIVDPASGTEASEL 133 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 L+ I + + +Q+ V+SY +P N L + + Sbjct: 134 AVLLSHITCMIFLAQNGMYQLANLFVQSYQLLPFAHGFTSFNSLP-LGEWLNKMVVNGVV 192 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L++P L + +++GL ++ PQ+ + +S + L Sbjct: 193 LTAPILVTLFITEVALGLYSRFCPQLNAFSLSLAIKSIIAFCVFLL 238 >gi|21230695|ref|NP_636612.1| HrpB8 protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769310|ref|YP_244072.1| HrpB8 protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992462|ref|YP_001904472.1| HrcT protein [Xanthomonas campestris pv. campestris str. B100] gi|21112284|gb|AAM40536.1| HrpB8 protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574642|gb|AAY50052.1| HrpB8 protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734222|emb|CAP52430.1| HrcT protein [Xanthomonas campestris pv. campestris] Length = 276 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 80/211 (37%), Gaps = 6/211 (2%) Query: 1 MTISPEIIMMSLFLIVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 + +S + + + L +C RV +LP + +P R S + Sbjct: 9 LALSSQGVSLLTLLALCGVRVFVLFFVLPATAQDSLPGMTRNGVIYVLSSFIA--YGQPA 66 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 D + A LV E F+G + G + G +I G N + Sbjct: 67 DALARIEAAGLVGLVFKEAFIGLLIGFAASTVFWVAESVGLLIDDVSGYNNVQMINPLSG 126 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQ 176 TP+++++ + +++ + + + AL +S+ P+ Q + S + Sbjct: 127 EQSTPVSTVLMQLAIVSFYALGGMLMLLGALFESFRWWPLSQLMPDMGAIGESFVIQQTD 186 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207 +++LS+P + ++ +++IG + + Sbjct: 187 GMMAAIVKLSAPVMLVLVLVDLAIGFVARAA 217 >gi|16520046|ref|NP_444166.1| innermembrane protein RhcT; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2494573|sp|P55722|Y4YN_RHISN RecName: Full=Probable translocation protein y4yN gi|2182739|gb|AAB91953.1| innermembrane protein RhcT; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 272 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 4/193 (2%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV-MVELFLG 80 +++LP + S I +R C A+AF + L + D + + L+ + E+F+G Sbjct: 32 IMLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQAPDPETSLIQIPLLGLKEVFVG 91 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 + G + + GLQ G I G+ + T + + + + +GI + Sbjct: 92 VLLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATNSQASAMGVFLGITAITIFVAA 151 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 V AL SY P+ + +L L +S P +FF + + Sbjct: 152 GGVEAVLSALYGSYSIWPVYRFQPTLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGLID 211 Query: 198 ISIGLLNKLVPQI 210 IS+ +L + PQ Sbjct: 212 ISMMMLRRFAPQF 224 >gi|310767464|gb|ADP12414.1| Surface presentation of antigens protein (Spa29 protein), Type III secretion apparatus [Erwinia sp. Ejp617] Length = 256 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 89/244 (36%), Gaps = 6/244 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ + R+ +LP L + + + +I+ LW + + Sbjct: 11 QHYLLIYAIAYARLAVVFYMLPILGERILSHLIIKNSIITLTII---GLWPCFENVAIIE 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 R +Y LV E +G + ++ + + G ++ G ++ ++ + + L Sbjct: 68 RGWYLLLV-QECIVGLILATVLCLPFWIVIGLGEILDNQRGASMADNIDPLNGGQNSILA 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ + + + + A V+SY P + G + +L + L Sbjct: 127 GLLNFTFGMIFFTNNGMRLLMEAFVESYQIFPPSSK-WLGFHWQEAGRILVILIESGILL 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL-FLCLSIEIIVYQFSHSFL 244 ++P + +V I +G+ + PQ+ + +S + + FL + + F Sbjct: 186 AAPVIIVMMVAEILLGVFARYCPQLNPFSLSLTIKSFITFITFLFYGFYALAEKPLDLFS 245 Query: 245 YGFF 248 G F Sbjct: 246 TGIF 249 >gi|289663770|ref|ZP_06485351.1| HrcT protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668193|ref|ZP_06489268.1| HrcT protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 276 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 4/229 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 RV +LP + +P R S + D + A +V E Sbjct: 27 VRVFVMFTVLPATAQDSLPGMARNGVIYVLSSFIA--YGQPADALEKIQAAGLVGVVFKE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 F+G + G + G +I G N TP+++++ + +++ Sbjct: 85 AFIGMLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTPVSTVLLQLAIVSF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLSSPFLFFYI 194 + + + AL +S+ P+ Q S + +++LS+P + + Sbjct: 145 YALGGMLMLLGALFESFRWWPLSQLQPDMGAVSESFVIQQTDGMMAAVVKLSAPVMLVLV 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + +++IG + + ++ +S P L L L L + + QFS S Sbjct: 205 LVDLAIGFVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQFSESL 253 >gi|78045990|ref|YP_362165.1| HrcT protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|984885|gb|AAB08463.1| HrpB8 [Xanthomonas euvesicatoria] gi|78034420|emb|CAJ22065.1| HrcT protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 276 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 99/247 (40%), Gaps = 6/247 (2%) Query: 1 MTISPEIIMMSLFLIVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 + IS + + + L +C RV ++LP + +P R S + Sbjct: 9 LAISSQGVSLLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPA 66 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 D + A +V E F+G + G + G +I G N Sbjct: 67 DALAKIQTAGLVGVVFKEAFVGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSG 126 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQT 177 TP+++++ + +++ + + + AL +S+ P+ Q N G + SFV Sbjct: 127 QQSTPVSTVLLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESFVIQQSD 186 Query: 178 TFMIM-LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + M ++LS+P + ++ +++IGL+ + ++ +S P L L L L + + Sbjct: 187 SMMAAVVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFI 246 Query: 237 YQFSHSF 243 QF + Sbjct: 247 AQFGEAL 253 >gi|332526331|ref|ZP_08402458.1| Type III secretory pathway protein [Rubrivivax benzoatilyticus JA2] gi|332110468|gb|EGJ10791.1| Type III secretory pathway protein [Rubrivivax benzoatilyticus JA2] Length = 264 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 83/235 (35%), Gaps = 4/235 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L R +LLP + +P VR + ++ L + + +Q + ++ L Sbjct: 19 LASTRFAVAFLLLPIFASETVPALVRNAIFVGLGLITL-AVQPAVPVQGWTA-GHWMLLF 76 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 E LG G+L+ + G ++ +G L + +L+ + + Sbjct: 77 GREALLGIGVGVLLGAVLWAFEAAGQIVDAKVGATLAQVADPLSGHQTSLSGALLSRLAM 136 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSSPFLF 191 + V+S+ P+ Q + F + ++ L++P L Sbjct: 137 FLFMAGGGFLALVAVAVQSFAMWPLAQPGLNFDAADVRIFESAFAQLMVLAFLLAAPALV 196 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 ++++GL+N+ PQ+ + IS +L L ++V G Sbjct: 197 VLYALDLALGLVNRFAPQLNLISISMSLKSVAATLVWVLMFTVLVDAIVARIDDG 251 >gi|254359073|ref|ZP_04975345.1| type III secretion system protein BsaY [Burkholderia mallei 2002721280] gi|148028260|gb|EDK86220.1| type III secretion system protein BsaY [Burkholderia mallei 2002721280] Length = 256 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 8/221 (3%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ + RV LLP L+ I V+ A + L + Sbjct: 19 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWSSF-----AHPPLQGGAL 73 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + + + E G V G+ + + G +I G + S+ + + + L + Sbjct: 74 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 133 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + A + AL SY T+P G + +L L L++P Sbjct: 134 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 191 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L V + +GL ++ PQ+ + +S + L Sbjct: 192 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 232 >gi|330876192|gb|EGH10341.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963710|gb|EGH63970.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 271 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 91/225 (40%), Gaps = 2/225 (0%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 +++ P + + +R C A+A S+ ++ ++ + + + L++ EL +G Sbjct: 29 GVVIITPAFNRLGLTGTIRGCVAVAISVPMILPVFSAFTSMPEHSVFFLAGLMIKELLIG 88 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + GLL + + G +I G ++ + + + +L+ + + ++ Sbjct: 89 LLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVTLITLFFMSG 148 Query: 141 FHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 + SY P+ + L G S + +L I + + +P L ++ ++ Sbjct: 149 GFILMVDGYYHSYQLWPVTEFTPLFSGAALMSILAILDQVMRIGVLMVAPLLIAMLITDL 208 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + L+++ P + I+ +S P ++ + + I ++ Sbjct: 209 MLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIEQL 253 >gi|75906096|gb|ABA29439.1| putative type III secretion system protein [Candidatus Hamiltonella defensa] Length = 243 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 79/231 (34%), Gaps = 9/231 (3%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ + R+ P S + + +RL M + L P+ + Sbjct: 13 LIVVLFASARLMPAFFXXPFFSNNVLTGSLRLPITMLVAFSLWPY---QEKVLPPFETFL 69 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 Y LV EL +G + LI L G++I G + +S+ + + L++ Sbjct: 70 YLGLVSKELLIGVLLAFLISWPFWILHAVGAIIDNQRGATISSSIDPISGVDTSELSNFF 129 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPI--GQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + +SY F IF+ ++ + L L+ Sbjct: 130 NLFAAAVFLQGGGXXLFXEVYHQSYQICSPLRDCTFAFSPIFAILTKLMSKS----LILA 185 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 SP + ++ +GLL++ PQ+ + I+ + L + L + Sbjct: 186 SPVIAVLLMTEAILGLLSRFAPQLNAFSIALTVKSLIAFLVIILYFSAFIP 236 >gi|330720473|gb|EGG98777.1| Flagellar biosynthesis protein FliR [gamma proteobacterium IMCC2047] Length = 136 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%) Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 L+ ++ +L ++ H V ++S+ +P+G E+ IF F Sbjct: 1 MAVLSQFYLMLVMLMFVCMNGHLVVIEVFIESFKVMPVGYEVFDVGIFMQLAKWGAWMFA 60 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L ++ P L +V N + G++N+ PQ+ ++ + P + +G + + +++ V QF Sbjct: 61 SALVIALPALCALLVVNFAFGIMNRAAPQLNVFALGFPVSMLVGLMIVFVTLTRFVPQFD 120 Query: 241 HS 242 Sbjct: 121 KL 122 >gi|21241187|ref|NP_640769.1| HrcT protein [Xanthomonas axonopodis pv. citri str. 306] gi|30524892|gb|AAP34337.1|AF499777_5 HrcT [Xanthomonas axonopodis pv. glycines] gi|21106494|gb|AAM35305.1| HrcT protein [Xanthomonas axonopodis pv. citri str. 306] Length = 276 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 98/247 (39%), Gaps = 6/247 (2%) Query: 1 MTISPEIIMMSLFLIVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 + IS + + + L +C RV ++LP + +P R S + Sbjct: 9 LAISSQGVSLLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPA 66 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 D + +V E F+G + G + G +I G N Sbjct: 67 DALAKIQTVGLVGVVFKEAFIGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSG 126 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQT 177 TP+++++ + +++ + + + AL +S+ P+ Q N G + SFV Sbjct: 127 QQSTPVSTVLLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESFVIQQSD 186 Query: 178 TFMIM-LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + M ++LS+P + ++ +++IGL+ + ++ +S P L L L L + + Sbjct: 187 SMMAAVVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFI 246 Query: 237 YQFSHSF 243 QF + Sbjct: 247 AQFGEAL 253 >gi|325927685|ref|ZP_08188913.1| HrcT protein [Xanthomonas perforans 91-118] gi|325541886|gb|EGD13400.1| HrcT protein [Xanthomonas perforans 91-118] Length = 276 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 98/247 (39%), Gaps = 6/247 (2%) Query: 1 MTISPEIIMMSLFLIVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 + IS + + + L +C RV ++LP + +P R S + Sbjct: 9 LAISSQGVSLLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPA 66 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 D + A +V E F+G + G + G +I G N Sbjct: 67 DALAKIQTAGLVGVVFKEAFVGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSG 126 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQT 177 TP+++++ + +++ + + + AL +S+ P+ Q N G + S V Sbjct: 127 QQSTPVSTVLLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESLVIQQSD 186 Query: 178 TFMIM-LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + M ++LS+P + ++ +++IGL+ + ++ +S P L L L L + + Sbjct: 187 SMMAAVVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFI 246 Query: 237 YQFSHSF 243 QF + Sbjct: 247 AQFGEAL 253 >gi|294625828|ref|ZP_06704444.1| HrcT protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665980|ref|ZP_06731243.1| HrcT protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|159024045|gb|ABW87273.1| HrcT [Xanthomonas fuscans subsp. fuscans] gi|292599856|gb|EFF43977.1| HrcT protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604228|gb|EFF47616.1| HrcT protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 276 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 6/247 (2%) Query: 1 MTISPEIIMMSLFLIVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 + IS + + + L +C RV +LP + +P R S + Sbjct: 9 LAISSQGVSLLTLLALCGVRVFVMFTVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPA 66 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 D + +V E F+G + G + G +I G N Sbjct: 67 DALAKIQTVGLVGVVFKEAFIGLMIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSG 126 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQT 177 TP+++++ + +++ + + + AL +S+ P+ Q N G + SFV Sbjct: 127 QQSTPVSTVLLQLAIVSFYALGGMLMLLGALFESFRWWPLSQLGPNVGAVAESFVIQQSD 186 Query: 178 TFMIM-LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 M ++LS+P + ++ +++IGL+ + ++ +S P L L L L + + Sbjct: 187 GMMAAVVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFI 246 Query: 237 YQFSHSF 243 QF + Sbjct: 247 AQFGEAL 253 >gi|323388138|gb|ADX60334.1| type III secretion protein RscT [Pseudomonas fluorescens] Length = 263 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + SL + + R+ C L+P +I R M +++ P + + +++ Sbjct: 7 FLPSLLVAMARIYPCAFLVPAFCFQHIRGMPRHIIVMVMALIPAPGIHAVLAAKDYSALM 66 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 S LV+ E LG + G+L+ + + G+++ G + S TP+ L Sbjct: 67 I-SGLVLKEAALGFLLGILLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGHL 125 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRL 185 + + L + + + SY P L N FS F+ +L TF M+ Sbjct: 126 FKQLVIYLLIAVLGLSVLTQVIWDSYLIWPPTAWLPLPAVNGFSVFIGLLGDTFTHMMLY 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++PF+ + LL PQ+ + ++TP G + L L ++ Sbjct: 186 AAPFIAVLLFLEFGFALLGLYSPQLQVSTLATPVKSLAGLVILLLYFPLL 235 >gi|1483324|emb|CAA68100.1| HrcT protein [Pantoea agglomerans] Length = 265 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 3/229 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + +L L R+ C +L+P S + + VR +A +IV + L + LQ + Sbjct: 13 LFALTLSAARLYPCFILVPIFSFNILQGMVRTGVVLALAIVPMLGLQAQLALQ-MPDWPQ 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 L++ E+ +G + GL++ + Q G++ G + + + TPL L+ Sbjct: 72 LIALILKEVVIGILLGLVMSMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGLLL 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLS 186 +L L + V + SY P+ Q L + F ++++L TF ++ + Sbjct: 132 QQTLILLLMLSLGLSGVTQIIWDSYLIWPVMQWLPLPHQQGFEQYLSLLTDTFSHIIIYA 191 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 P + ++ + SI +L+ PQ+ + +S P LG LF L I + Sbjct: 192 GPLVALLLMMDFSIAILSLYSPQLQAFVLSVPAKCLLGLLFFVLYIPTL 240 >gi|238918896|ref|YP_002932410.1| type III secretion apparatus protein SpaR/YscT/HrcT, [Edwardsiella ictaluri 93-146] gi|48256990|gb|AAT41685.1| type three secretion apparatus protein T [Edwardsiella ictaluri] gi|84663104|gb|ABC60086.1| EsaT [Edwardsiella ictaluri 93-146] gi|238868464|gb|ACR68175.1| type III secretion apparatus protein SpaR/YscT/HrcT, putative [Edwardsiella ictaluri 93-146] Length = 259 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 2/223 (0%) Query: 14 LIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72 + + R ++++P + + + +R AM ++ LP L + +Y L Sbjct: 13 IAMMRPLGIMLIMPLFNSAMLGGALIRNALAMMAALPALPHLALMVLPSPLQAPLHYGGL 72 Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 ++ EL +G + G + L G +I T G ++ +P+ L + Sbjct: 73 LLGELVVGLLLGFSAALPLWALNMAGFIIDTMRGASIAVLFNPLLGEQSSPMGVLFSQLV 132 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFLF 191 + H + AL SYG +P GQ +G F + ++ + + L S P + Sbjct: 133 GVLFIAGGGFHALLTALFSSYGDLPPGQYWQWGRGFIPLLMHLWHLLYSLALSFSMPAMV 192 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 ++ ++++G +N+ V Q+ ++ +S P + L L +S+ Sbjct: 193 MMVLVDLALGFINRSVQQLNVFTLSMPIKSAIVLLMLIISLPF 235 >gi|157158728|ref|YP_001464195.1| type III secretion apparatus protein EpaR [Escherichia coli E24377A] gi|157080758|gb|ABV20466.1| type III secretion apparatus protein EpaR [Escherichia coli E24377A] Length = 255 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 77/229 (33%), Gaps = 5/229 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L+ + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +S+ P G + + + +S Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSHNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P + + +GLL Q+ + IS L L L + I+ Sbjct: 187 PVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPIL 235 >gi|292487273|ref|YP_003530145.1| surface presentation of antigens protein spaR [Erwinia amylovora CFBP1430] gi|292900355|ref|YP_003539724.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200203|emb|CBJ47331.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552692|emb|CBA19737.1| Surface presentation of antigens protein spaR [Erwinia amylovora CFBP1430] Length = 254 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 88/244 (36%), Gaps = 6/244 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ + R+ LLP L + + +A I+ L + Sbjct: 11 QHGVLIFTMAYARLAIVFYLLPVLGERVLSNLIIKNTIIALIIIGLW----PCYAEALNP 66 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + L++ E +G + + + V + G ++ G + S+ + + + L+ Sbjct: 67 EQGWLILLLKECVIGLILAMTLCVPFWIVISLGEILDNQRGATISDSIDPVNGVQSSTLS 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 + + + LV+SY P G L + + + +L + L Sbjct: 127 GFLNFAFGAIFFASGGMSSLIELLVQSYHVFPRGSNLVDFH-WQAVGGLLMVLAKGSIML 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGS-LFLCLSIEIIVYQFSHSFL 244 S+P + +V I +G+ + PQ+ + +S + +FL + I + H F Sbjct: 186 SAPVMIVMMVAEILLGVFARFCPQLNPFSLSLAIKSFIAFTVFLFYGFQAISQKPLHLFS 245 Query: 245 YGFF 248 FF Sbjct: 246 IAFF 249 >gi|83716221|ref|YP_439035.1| type III secretion system protein BsaY [Burkholderia thailandensis E264] gi|83650046|gb|ABC34110.1| type III secretion system protein BsaY [Burkholderia thailandensis E264] Length = 251 Score = 82.0 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 8/210 (3%) Query: 22 CIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 LLP L+ I V+ A + L P + + + + E G Sbjct: 25 VFYLLPFLNDRTIVNGLVKNTIVFAVIVGLWPSF-----AHPPLRGGALAGIALTEAAAG 79 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G+ + + G +I G + S+ + + + L + + A Sbjct: 80 LVLGVALSLPFWVATAIGELIDNQRGATISDSIDPATGVEASALAPFVSLFYAAAFLQQG 139 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 + AL SY T+P G + +L L L++P L V + + Sbjct: 140 GMLTIVGALESSYATVPAGAPFSAD--LPRVGALLTDLVAHGLALAAPVLIVMFVTDALL 197 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 GL ++ PQ+ + +S + L Sbjct: 198 GLFSRFCPQVNAFSLSLTVKSIVAFAVFHL 227 >gi|85058549|ref|YP_454251.1| type III secretion apparatus SpaR [Sodalis glossinidius str. 'morsitans'] gi|84779069|dbj|BAE73846.1| type III secretion apparatus SpaR [Sodalis glossinidius str. 'morsitans'] Length = 259 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 5/221 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 M + L RVG ++LP L + + + +++ + TI + Sbjct: 15 MIIMLAYVRVGIVFLMLPLLGGRILSHLIVKNMVIFITLIGIWPDIRTIP----NIEQGW 70 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L+ E G + +++ + G VI G + S+ + L T ++S + Sbjct: 71 LVLIARECVTGLMLAMILSLPFWIASAIGEVIDNQRGATISDSIDPVNGLQSTTMSSFLS 130 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ALV+SY P G L G ++ ++ + L++P Sbjct: 131 FAFGAIFMAQGGMILLMNALVQSYRVFPSGSSL-LGAQWAVAGKLVHLLLENSVILAAPT 189 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L ++ +++G+ ++ PQ+ + +S + Sbjct: 190 LITLMLSEMTLGVFSRYCPQLNPFSLSLSLKSFIAFTIFMF 230 >gi|58579716|ref|YP_198732.1| HrpB8 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621740|ref|YP_449112.1| HrcT protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574358|ref|YP_001911287.1| type III secretion apparatus protein SpaR/YscT/HrcT [Xanthomonas oryzae pv. oryzae PXO99A] gi|7350911|gb|AAF61279.1| HrpB8 [Xanthomonas oryzae pv. oryzae] gi|9711581|dbj|BAB07850.1| HrpB8 [Xanthomonas oryzae pv. oryzae] gi|24251285|gb|AAN46404.1| HrpB8 [Xanthomonas oryzae pv. oryzae] gi|50428344|dbj|BAD29981.1| HrcT [Xanthomonas oryzae pv. oryzae] gi|58424310|gb|AAW73347.1| HrpB8 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365680|dbj|BAE66838.1| HrcT protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518810|gb|ACD56755.1| type III secretion apparatus protein SpaR/YscT/HrcT [Xanthomonas oryzae pv. oryzae PXO99A] Length = 276 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 95/247 (38%), Gaps = 6/247 (2%) Query: 1 MTISPEIIMMSLFLIVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 + +S + + + L +C RV ++LP + +P R S + Sbjct: 9 LALSSQGVSLLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPA 66 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 D + +V E F+G + G + G +I G N Sbjct: 67 DALAKIQTVGLVGVVFKEAFIGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSG 126 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQ 176 TP+++++ + +++ + + + AL +S+ P+ Q + + Sbjct: 127 QQSTPVSTVLLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESFVIQQYD 186 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +++LS+P + ++ +++IGL+ + ++ +S P L L L L I + + Sbjct: 187 SMMAAVVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLISVFI 246 Query: 237 YQFSHSF 243 QF + Sbjct: 247 AQFGEAL 253 >gi|1648938|gb|AAB17686.1| putative [Sinorhizobium fredii] gi|19749330|gb|AAL98700.1| Y4yN [Sinorhizobium fredii] Length = 272 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 4/193 (2%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-LQNFVNRAYYSKLVMVELFLG 80 +++LP + S I +R C A+AF + L + D + L + L + E+F+G Sbjct: 32 IMLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQALDPETSLIQIPLLGLKEVFVG 91 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 + G + + GLQ G I G+ + T + S + + +GI + Sbjct: 92 VLLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATSSQASAMGVFLGITAITIFVAA 151 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 V AL SY P+ + +L L +S P +FF + + Sbjct: 152 GGVEAVLSALYGSYSIWPVYRFQPSLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGLID 211 Query: 198 ISIGLLNKLVPQI 210 IS+ +L + PQ Sbjct: 212 ISMMMLRRFAPQF 224 >gi|166714018|ref|ZP_02245225.1| HrpB8 [Xanthomonas oryzae pv. oryzicola BLS256] gi|61219457|gb|AAX40634.1| HrpB8 [Xanthomonas oryzae pv. oryzicola] Length = 276 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 94/247 (38%), Gaps = 6/247 (2%) Query: 1 MTISPEIIMMSLFLIVC--RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI 58 + +S + + + L +C RV ++LP + +P R S + Sbjct: 9 LALSSQGVSLLTLLALCGVRVLVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPA 66 Query: 59 DLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 D + +V E F+G + G + G +I G N Sbjct: 67 DALVKIQTVGLVGVVFKEAFIGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSG 126 Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQ 176 TP+++++ + +++ + + + AL +S+ P+ Q + + Sbjct: 127 QQSTPVSTVLLQLAIVSFYALGGMLMLLGALFESFHWWPLTQLGPNMGAVAESFVIRQYD 186 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +++LS+P + ++ +++IGL+ + ++ +S P L L L L + + Sbjct: 187 SMIAAVVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFI 246 Query: 237 YQFSHSF 243 QF + Sbjct: 247 AQFGEAL 253 >gi|45504757|gb|AAS66848.1| YsaT [Sodalis glossinidius] Length = 245 Score = 82.0 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 5/221 (2%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 M + L RVG ++LP L + + + +++ + TI + Sbjct: 1 MIIMLAYVRVGIVFLMLPLLGGRILSHLIVKNMVIFITLIGIWPDIRTIP----NIEQGW 56 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L+ E G + +++ + G VI G + S+ + L T ++S + Sbjct: 57 LVLIARECVTGLMLAMILSLPFWIASAIGEVIDNQRGATISDSIDPVNGLQSTTMSSFLS 116 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189 + ALV+SY P G L G ++ ++ + L++P Sbjct: 117 FAFGAIFMAQGGMILLMNALVQSYRVFPSGSSL-LGAQWAVAGKLVHLLLENSVILAAPT 175 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 L ++ +++G+ ++ PQ+ + +S + Sbjct: 176 LITLMLSEMTLGVFSRYCPQLNPFSLSLSLKSFIAFTIFMF 216 >gi|259908636|ref|YP_002648992.1| Surface presentation of antigens protein (Spa29 protein), Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|224964258|emb|CAX55765.1| Surface presentation of antigens protein (Spa29 protein), Type III secretion apparatus [Erwinia pyrifoliae Ep1/96] gi|283478608|emb|CAY74524.1| Surface presentation of antigens protein SpaR [Erwinia pyrifoliae DSM 12163] Length = 256 Score = 81.6 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 90/244 (36%), Gaps = 6/244 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + ++ + R+ +LP L + + + +I+ LW + + Sbjct: 11 QHYLLIYAIAYARLAVVFYMLPILGERILSHLIIKNSIITLTII---GLWPCFENVAIIE 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 R +Y LV E +G + ++ + + G ++ G ++ ++ + + L Sbjct: 68 RGWYLLLV-QECIVGLILATVLCLPFWIVIGLGEILDNQRGASMADNIDPLNGGQNSILA 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ + + + + A V+SY P + G + +L + L Sbjct: 127 GLLNFTFGMIFFTNNGMRLLMEAFVESYHIFPTSSK-WLGFHWQEAGRILVMLIESGIML 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL-FLCLSIEIIVYQFSHSFL 244 ++P + +V I +G+ + PQ+ + +S + + FL + + + F Sbjct: 186 AAPVIIVMMVAEILLGVFARYCPQLNPFSLSLTIKSFITFITFLFYGFNALAEKPLNLFS 245 Query: 245 YGFF 248 G F Sbjct: 246 TGIF 249 >gi|323223785|gb|EGA08089.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 183 Score = 81.6 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 65/160 (40%), Gaps = 1/160 (0%) Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + G L + G ++ T G + T + + L + ++ Sbjct: 6 FLIGFLCGGPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISG 65 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNIS 199 + L +SY +P G+ L F F ++ +T + + + S P + ++ +++ Sbjct: 66 GMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLA 125 Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 +GLLN+ Q+ ++F S P L L L +S ++ + Sbjct: 126 LGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHHY 165 >gi|325921917|ref|ZP_08183728.1| HrcT protein [Xanthomonas gardneri ATCC 19865] gi|325547619|gb|EGD18662.1| HrcT protein [Xanthomonas gardneri ATCC 19865] Length = 276 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 72/202 (35%), Gaps = 4/202 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ L L RV +LP + +P R S + D + Sbjct: 18 LLTLLALCGVRVFVMFFVLPATAQDSLPGMARNGVVYVLSSFIA--YGQPADALARIEAT 75 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV E FLG + G + G +I G N TP++++ Sbjct: 76 GLVGLVFKEAFLGLLIGFAASTVFWVAESVGLLIDDVSGYNNVQMTNPLSGEQSTPVSTV 135 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185 + + +++ + + + AL +S+ P+ Q + + +++L Sbjct: 136 LMQLAIVSFYALGGMLMLLGALFESFRWWPLSQLTPDMGAVAESFVIQQTDGMMTAIVKL 195 Query: 186 SSPFLFFYIVFNISIGLLNKLV 207 ++P + ++ +++IG + + Sbjct: 196 AAPLMLVLVLVDLAIGFVARAA 217 >gi|171319014|ref|ZP_02908141.1| type III secretion system inner membrane R protein [Burkholderia ambifaria MEX-5] gi|171095769|gb|EDT40722.1| type III secretion system inner membrane R protein [Burkholderia ambifaria MEX-5] Length = 263 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 5/236 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 L L++ R ++ +P L + R+ A+A ++ P + TI +A + Sbjct: 14 LALLLSRGYGLLLAIPPLMKAGQGWMTRVPIALAIALPTFPLAYQTIPDTLAGGQAVF-- 71 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-AETPLNSLIGI 130 + + EL LG + G+ + + G+++ GL + + + T Sbjct: 72 IAVRELALGALTGIFMLPLFAVPRAVGTLVDQQAGLMSIQLFDPTSAERSATIFADAFEQ 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSP 188 L V + S+ P+ + ++ + F +R ++P Sbjct: 132 TALFMFVVAGGFGVLAELYAASHRFWPVAATDLPSIEHVTDLATRGVGAMFDSAIRYAAP 191 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 F+ I+ IGL+ + PQ+ + S + L + + V F ++F Sbjct: 192 FVATLILLEYGIGLIGRAAPQLNVLTTSVALKLVATLLLVAIVGPFFVDAFGNAFD 247 >gi|254575134|gb|ACT68035.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 254 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 5/225 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + +++ ++ R+ +LP L + V +A +I+ LW + Sbjct: 11 QHSVLTFVMVYARLAIVFYMLPALGERVLSNLVIKNTIIALTII---GLWPSFATVVMPE 67 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + ++ L+ E +G + + + + G ++ G + S+ + + + L+ Sbjct: 68 QGWFIILI-KEFVVGLILAATLCIPFWIVTGLGEILDNQRGATISDSIDPVNGVQSSILS 126 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 L+ +V ++ +V+SY +P G L+ G + +LQ + L Sbjct: 127 GLLSFAFGAIFFVSGGMLKLMEVMVQSYEMLPRGSSLD-GIRWEHAGVLLQVLMQNSIML 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 ++P + + + +G+ + PQ+ + +S + + Sbjct: 186 AAPIMLVMMTAEMLLGVFARYCPQLNPFSLSLTVKSTIAFIVFLF 230 >gi|304414278|ref|ZP_07395646.1| type III secretion system apparatus protein [Candidatus Regiella insecticola LSR1] gi|304283492|gb|EFL91888.1| type III secretion system apparatus protein [Candidatus Regiella insecticola LSR1] Length = 275 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 105/234 (44%), Gaps = 3/234 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++L L + R +++LP + + +R +A ++ + P + + L + + Sbjct: 14 WVVALALAMMRPLGILLILPLFTAQSLGSSLLRNGLVVAIALPMTPMFFSS-PLIHSSSI 72 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + ++M+EL +G + G + + G +I T G + T + + + + Sbjct: 73 MLWCSIIMIELLIGIIIGFFAALPFWAIDMAGFLIDTLRGATMATLLNPTMGMQSSIFGI 132 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRL 185 L I + + +Q+ L SY +P GQ + + F +F+ + + F + L Sbjct: 133 LFTQILSVLFLISGGFNQLLLVLYGSYKILPTGQGITLSDAFFTFIRVQWKLMFELCLTF 192 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 + P L ++ ++++GL+N+ Q+ ++F++ P + L + + + + + Sbjct: 193 ALPALLVMLLTDLALGLINRSAQQLNVFFLAMPIKSAMALFLLLIGLPLAFHHY 246 >gi|284006886|emb|CBA72155.1| type III secretion component protein SctT [Arsenophonus nasoniae] Length = 240 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 79/219 (36%), Gaps = 3/219 (1%) Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 C LP LS + + L + FS++ L ++ Y L++ E+ LG Sbjct: 2 GCFTTLPILSKKLLGGTL-LRNGILFSLLFFLIPTIDAQLILNISGNEYILLIIKEILLG 60 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 G + + +Q G +I G + + + +P+ ++ Sbjct: 61 FFFGFIAAIPFWMMQSIGFMIDNQRGTTMASIVNPLFDEQTSPMGLFFSQAFTTLFFISG 120 Query: 141 FHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198 + L S+ PI L + FV + L L++P + + Sbjct: 121 NFLLLIQTLYHSFSIWPIYHFLPGFNQQLCVFFVQQFKLMLDNFLLLAAPLVIAMFIVEW 180 Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + L+++ P + ++ +S P + SL L ++++ Sbjct: 181 GLALISRFAPSLNVFILSMPLKGAISSLLLVSYFSVLIF 219 >gi|304415256|ref|ZP_07395953.1| putative type III secretion system protein [Candidatus Regiella insecticola LSR1] gi|304282882|gb|EFL91348.1| putative type III secretion system protein [Candidatus Regiella insecticola LSR1] Length = 211 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 2/183 (1%) Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL 107 +V + + Y L+ E+ +G + +I L GS++ G Sbjct: 2 LVAFALWPHAPTERPPFDALVYLGLISREVTIGLLLASVIAWPFWVLHAVGSIVDNQRGA 61 Query: 108 NLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167 + +S+ + + L + + + + SY Sbjct: 62 TISSSIDPISGVDTSELANFFNLFAAVIFLQGGGMTLLLEVYDASYRFC--DPLTECSPA 119 Query: 168 FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLF 227 +++L + L L+SP + ++ +GLL++ PQ+ + I+ + + Sbjct: 120 LLPLLSILTQLMVKALVLASPVIAALLMTEAILGLLSRFAPQLNAFSIALTIKGTVAFVI 179 Query: 228 LCL 230 + + Sbjct: 180 IMI 182 >gi|251789491|ref|YP_003004212.1| type III secretion protein SpaR/YscT/HrcT [Dickeya zeae Ech1591] gi|247538112|gb|ACT06733.1| type III secretion protein SpaR/YscT/HrcT [Dickeya zeae Ech1591] Length = 267 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L V R+ C+ L+P S S I +R A+A ++V + + L + Sbjct: 13 FIYALTLGVARLYPCLFLVPLFSFSIIKGMLRNAVAIAIALVPAGAIQQQM-LTTTITWP 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ EL +G + G+++ + + G++ G + + TPL + Sbjct: 72 MLPALLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDATPLGHM 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRL 185 + + + L + L SY P L F +++++L+ TF M+ Sbjct: 132 LKELFTMLLVLTIGFSGFTQLLWDSYRLWPALDFLPPLSEQGFHTYLDLLKETFQHMIVY 191 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI +L+ PQ+ +Y +STP G F L + ++ Sbjct: 192 AGPLVALLLLLEFSIAILSLYSPQLQVYVLSTPAKCLAGMAFFVLYMPVL 241 >gi|15639703|ref|NP_219153.1| flagellar biosynthetic protein (fliR) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025941|ref|YP_001933713.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum SS14] gi|3023765|sp|P74932|FLIR_TREPA RecName: Full=Flagellar biosynthetic protein fliR gi|973199|gb|AAB00548.1| FliR [Treponema pallidum] gi|3323018|gb|AAC65682.1| flagellar biosynthetic protein (fliR) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018516|gb|ACD71134.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum SS14] gi|291060080|gb|ADD72815.1| flagellar biosynthetic protein FliR [Treponema pallidum subsp. pallidum str. Chicago] Length = 265 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 92/238 (38%), Gaps = 3/238 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 FL RV + + +P LS+ + VR+ A + ++LP + +Q AYY Sbjct: 15 FFLAAVRVFALMFTVPLLSVRSVSRVVRVALAGLIAFLVLPLAYPA-PMQVREFSAYYVL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 L++ E LG + G I V G S +G + + + + Sbjct: 74 LLLGEGLLGILTGFFISVIFTTFSAAGQFFSYQMGFGTSEMYDTFAQIENPLMGQFLNFV 133 Query: 132 GLLALWVI-DFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPF 189 +L I F +++S+ + L + F L F+ + ++ P Sbjct: 134 AMLVFLQIKGFQILFLGGVLRSFQAVNCFVFLRKQEALLLFFTKALSALFLHAMTIALPI 193 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + ++ ++S+GLL K PQ+ + P I + + L + + ++ F GF Sbjct: 194 MGALLLIHVSMGLLTKAAPQMNLLSEGLPLTIVVTFVLLSVILPYMINLFVSILFGGF 251 >gi|167030916|gb|ABZ05784.1| HrcT [Pectobacterium carotovorum subsp. carotovorum] Length = 267 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 100/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++ L + R+ C +L+P S++ + R ++ +++ P + + L ++ Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMTRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + L++ + + G++ G + + + TPL L Sbjct: 70 MLPGLLLKEVIVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ L F ++++L TF ++ Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYQIWPVLSWLPAPGEQGFEVYLSLLADTFTHLVVY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI LL+ PQ+ ++ +S P +G F + + ++ Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIVYLPVL 239 >gi|146305089|ref|YP_001185554.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas mendocina ymp] gi|145573290|gb|ABP82822.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas mendocina ymp] Length = 266 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 99/231 (42%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M+ L L V R+ C++L+P ++ +R +A +++ P + + + + + Sbjct: 11 LMLGLGLGVARLLPCMLLVPAFCFKHLKGILRYGVVIAVAMIPAPSIGEALASEG-ASFG 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ LG + G+L+ + G+++ + G + + TP+ L Sbjct: 70 VVMGLLIKEVMLGALLGVLLHMPFWMFASVGALLDSQRGALSGGQLNPALGPDVTPMGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 + + ++ + + + + SY P L + ++ L T ML Sbjct: 130 LQEVLVMLVILFGGLPLITQVIWDSYLIWPPTVWLPILTEDGLGVLLSQLSRTLQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ ++ +++ Q+ ++ ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAMAIISLYAQQLNVFILAMPAKSIAGLAFLLIYLPTLL 240 >gi|323191514|gb|EFZ76775.1| lateral flagellar export/assembly protein [Escherichia coli RN587/1] Length = 176 Score = 79.3 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 61/130 (46%), Gaps = 2/130 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + + L+ R+ + + +P L S + +VR+ ++A +I++ P + + + + Sbjct: 12 LALGLWFPFVRIMAFLRYMPVLDNSALTARVRIILSLALAIIITPLIP--HPIPHDLLSL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L Sbjct: 70 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129 Query: 128 IGIIGLLALW 137 I + +L + Sbjct: 130 INVYAILLFF 139 >gi|227328489|ref|ZP_03832513.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 267 Score = 79.3 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 100/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++ L + R+ C +L+P S++ + R ++ +++ P + + L ++ Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMTRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + L++ + + G++ G + + + TPL L Sbjct: 70 MLPGLLLKEVIVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ L F ++++L TF ++ Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYQIWPVLSWLPAPGEQGFEVYLSLLADTFTHLVVY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI LL+ PQ+ ++ +S P +G F + + ++ Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIVYLPVL 239 >gi|227114166|ref|ZP_03827822.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 267 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 100/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++ L + R+ C +L+P S++ + R ++ +++ P + + L ++ Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMTRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + L++ + + G++ G + + + TPL L Sbjct: 70 MLPGLLLKEVIVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ L F ++++L TF ++ Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYHIWPVLSWLPAPGEQGFEVYLSLLADTFTHLVVY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI LL+ PQ+ ++ +S P +G F + + ++ Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIIYLPVL 239 >gi|34500879|gb|AAQ73907.1| HrcT [Pectobacterium carotovorum subsp. carotovorum] Length = 267 Score = 78.9 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 100/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++ L + R+ C +L+P S++ + R ++ +++ P + + L ++ Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMTRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + L++ + + G++ G + + + TPL L Sbjct: 70 MLPGLLLKEILVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ L F ++++L TF ++ Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYQIWPVLSWLPAPGEQGFEVYLSLLADTFTHLVVY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI LL+ PQ+ ++ ++ P +G F + + I+ Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLAIPAKCLVGMAFFIVYLPIL 239 >gi|188534808|ref|YP_001908605.1| Surface presentation of antigens protein (Spa29 protein), Type III secretion apparatus [Erwinia tasmaniensis Et1/99] gi|188029850|emb|CAO97731.1| Surface presentation of antigens protein (Spa29 protein), Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 254 Score = 78.9 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 7/220 (3%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQ-VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + RV LLP L + V+ + L P ++ + + Sbjct: 17 FAMAYARVAIVFYLLPVLGERVLANLIVKNTIIGLVILGLWPCFGQVLNPEQ-----GWF 71 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L++ E +G + + + V + G ++ G L S+ + + + L+ + Sbjct: 72 ILLVKECVIGLILAMTLCVPFWIVINLGEILDNQRGATLSDSIDPVNGVQSSTLSGFLNF 131 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + + LV+SY P G L + + ++L + L++P + Sbjct: 132 AFGAIFFASGGMSSLMEVLVQSYQVFPTGDNLVDFR-WEAAGHLLMVLAEGSIMLAAPVM 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 +V I +G+ + PQ+ + +S + + Sbjct: 191 IVMMVAEILLGVFARFCPQLNPFSLSLTIKSFIAFIVFLF 230 >gi|271500419|ref|YP_003333444.1| type III secretion protein SpaR/YscT/HrcT [Dickeya dadantii Ech586] gi|270343974|gb|ACZ76739.1| type III secretion protein SpaR/YscT/HrcT [Dickeya dadantii Ech586] Length = 267 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L V R+ C+ L+P S S I +R A+A ++V + + L + Sbjct: 13 FIYALTLGVARLYPCLFLVPLFSFSIIKGMLRNAVALAIALVPAGAIQQHM-LTTTITWP 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ EL +G + G+++ + + G++ G + + TPL + Sbjct: 72 MLPALLLKELIIGVLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDATPLGHM 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRL 185 + + L L + L SY P L F +++ +L TF M+ Sbjct: 132 MKELFTLLLVITIGFSGFTQLLWDSYQLWPALDFLPPLSELGFHTYLGLLNDTFQHMIVY 191 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI +L+ PQ+ +Y +S P G F L + ++ Sbjct: 192 AGPLVALLLLLEFSIAILSLYSPQLQVYVLSAPAKCLAGMAFFVLYMPVL 241 >gi|50121005|ref|YP_050172.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560426|gb|AAS20386.1| HrcT [Pectobacterium atrosepticum] gi|49611531|emb|CAG74979.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 266 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 101/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++ L + R+ C +L+P S++ + +R ++ +++ P + + L ++ Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMMRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L+ E+ +G + L++ + + G++ G + + + TPL L Sbjct: 70 MLPALLFKEIMVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L V + + SY P+ L + F ++N+L TF ++ Sbjct: 130 LKQTLILLLIVGIGLKGLTQLIWDSYQIWPVLSWLPAPSEKGFEVYLNLLADTFTHLVVY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI LL+ PQ+ ++ +S P +G F + + ++ Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIIYLPVL 239 >gi|307131232|ref|YP_003883248.1| type III secretion inner membrane protein [Dickeya dadantii 3937] gi|306528761|gb|ADM98691.1| type III secretion inner membrane protein [Dickeya dadantii 3937] Length = 267 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L V R+ C+ L+P S + I +R A+A ++V + + L + Sbjct: 13 FIYALTLGVARLYPCLFLVPLFSFTIIKGMLRNAVAIALALVPAGAIQQQM-LTTTITWP 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ EL +G + G+++ + + G++ G + + TPL + Sbjct: 72 MLPGLLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDATPLGHM 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRL 185 + + ++ L + L SY P L F +++++L+ TF M+ Sbjct: 132 MKELFMMMLIITIGFPGFTQLLWDSYRLWPALDFLPPLSEQGFHTYLDLLKDTFQHMIVY 191 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI +L+ PQ+ +Y +STP G F L + ++ Sbjct: 192 AGPLVALLLLLEFSIAILSLYSPQLQVYVLSTPAKCLAGMAFFVLYMPVL 241 >gi|226326422|ref|ZP_03801940.1| hypothetical protein PROPEN_00270 [Proteus penneri ATCC 35198] gi|225205205|gb|EEG87559.1| hypothetical protein PROPEN_00270 [Proteus penneri ATCC 35198] Length = 257 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 6/228 (2%) Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81 M +P L+ + Q + + +I + + + + + +++ EL +G Sbjct: 25 VFMFIPFLNSRVLNSQ---LLKYIIVFYVAMGIKASIPITDNIRDS-WGIILISELVIGI 80 Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDF 141 + G+LI G I G ++ ++ + + + SL G+ + Sbjct: 81 LIGMLIATPFWIASAFGEFIDNQRGASIGDTINPTTGIESSEFASLTGLFCVAYFMNTGG 140 Query: 142 HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201 + L SY PIG N +S L + + L SP L + +++G Sbjct: 141 LIILMDTLKDSYDVFPIG-YFNQNIGYSFIGKWLTEMVRVAIVLVSPVLIIMFLSEVALG 199 Query: 202 LLNKLVPQIPIYFISTPYLIGLGSLFLCLSI-EIIVYQFSHSFLYGFF 248 + + PQ+ + +S + L L + S F +F Sbjct: 200 VYSLFCPQLNAFSLSLCIKGIIAFSALLLFFSSALTNDLSEFFNNRYF 247 >gi|167573306|ref|ZP_02366180.1| type III secretion system protein BsaY [Burkholderia oklahomensis C6786] Length = 245 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 10/210 (4%) Query: 22 CIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 LLP L+ I V+ A + L P + + E+ G Sbjct: 21 VFYLLPFLNDRTIVNGVVKNTIVFAVILGLWPSFAH-------PQGGALFGVALTEVAAG 73 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G+ + + G +I G + S+ + + + + + A Sbjct: 74 LVLGVALSLPFWVATVVGELIDNQRGATISDSIDPATGVEASAFAPFVSLFYAAAFLQQG 133 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 + AL SY T+P G + +L L L++P L + + + Sbjct: 134 GMLTIAGALESSYATVPTGALFDVD--LLRVGALLTDLVAHGLALAAPVLIVMFLTDALL 191 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 GL ++ PQ+ + +S + L Sbjct: 192 GLFSRFCPQVNAFSLSLTVKSLVAFAVFHL 221 >gi|167566196|ref|ZP_02359112.1| type III secretion system protein BsaY [Burkholderia oklahomensis EO147] Length = 250 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 10/210 (4%) Query: 22 CIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80 LLP L+ I V+ A + L P + + E+ G Sbjct: 26 VFYLLPFLNDRTIVNGVVKNTIVFAVILGLWPSFAH-------PQGGALFGVALTEVAAG 78 Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 V G+ + + G +I G + S+ + + + + + A Sbjct: 79 LVLGVALSLPFWVATVVGELIDNQRGATISDSIDPATGVEASAFAPFVSLFYAAAFLQQG 138 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 + AL SY T+P G + +L L L++P L + + + Sbjct: 139 GMLTIAGALESSYATVPTGALFDVD--LLRVGALLTDLVAHGLALAAPVLIVMFLTDALL 196 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230 GL ++ PQ+ + +S + L Sbjct: 197 GLFSRFCPQVNAFSLSLTVKSLVAFAVFHL 226 >gi|253688599|ref|YP_003017789.1| type III secretion protein SpaR/YscT/HrcT [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755177|gb|ACT13253.1| type III secretion protein SpaR/YscT/HrcT [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 266 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 102/230 (44%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++++ L + R+ C +L+P LS++ + +R ++ +++ P + + L ++ Sbjct: 11 FIIAITLGIARLYPCFILVPVLSLNVLKGMMRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + L++ + + G++ G + + + TPL L Sbjct: 70 MLPGLLLKEIIVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ L F ++++L TF ++ Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYQIWPVLSWLPAPGEQGFEVYLDLLADTFTHLVVY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ SI LL+ PQ+ ++ +S P +G F + + ++ Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIVYLPVL 239 >gi|27376932|ref|NP_768461.1| RhcT protein [Bradyrhizobium japonicum USDA 110] gi|12620528|gb|AAG60804.1|AF322012_109 RhcT [Bradyrhizobium japonicum] gi|27350074|dbj|BAC47086.1| RhcT protein [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 78/198 (39%), Gaps = 4/198 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSI-VLLPFLWDTIDLQNFVNRAYYSKLVMV 75 R +++LP + I +R +A + L L + L + Sbjct: 28 ARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLAQIKLGLQALDPNTRLVSVTMLGVK 87 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM-GISDSLAETPLNSLIGIIGLL 134 E+F+G + G+L+ + +Q G +I T G++ Q + + T +G+ + Sbjct: 88 EVFVGLMLGILLSIPLWSIQAVGDIIDTQRGISSQVAGEDPATHSQATGTGLFLGVTAVT 147 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSF--VNMLQTTFMIMLRLSSPFLFF 192 ++ + L SY P+ Q L + + + +L M L ++ P L Sbjct: 148 IFVLVGGLQTMVSGLYGSYLVWPVYQFLPALTVQGAMECLALLDRIMMTTLLVAGPVLAL 207 Query: 193 YIVFNISIGLLNKLVPQI 210 ++ +IS+ +L + Q+ Sbjct: 208 LLLVDISVMMLGRFASQL 225 >gi|168235928|ref|ZP_02660986.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737958|ref|YP_002115840.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713460|gb|ACF92681.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290723|gb|EDY30077.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 263 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 83/230 (36%), Gaps = 5/230 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ S L RV +P L+ + R + ++ + P + V Sbjct: 12 LVASAALGFARVAPIFFFMPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPPFLSVA-- 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+ E +G + G L+ + G +I G L +S+ ++ + + + + Sbjct: 70 -MIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + + L KSY E + + L L+S Sbjct: 129 LNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 P + ++ + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 187 PVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236 >gi|326624619|gb|EGE30964.1| needle complex export protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 259 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 5/237 (2%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M ++ S L RV LP L+ + R + ++ + P + Sbjct: 1 MYFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPP 60 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 V LV+ E +G + G L+ + G +I G L +S+ ++ + Sbjct: 61 FLSVA---MIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGID 117 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + + + + + + + L KSY E + + Sbjct: 118 TSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQ 175 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 L L+SP + ++ + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 176 NALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 232 >gi|85060060|ref|YP_455762.1| type III secretion apparatus SpaR [Sodalis glossinidius str. 'morsitans'] gi|45504777|gb|AAS66867.1| SpaR [Sodalis glossinidius] gi|84780580|dbj|BAE75357.1| type III secretion apparatus SpaR [Sodalis glossinidius str. 'morsitans'] Length = 264 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 95/237 (40%), Gaps = 7/237 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++L ++ R+ LLP S S + + VR L P+ + ++ A Sbjct: 12 WLITLAVVSARITPAFFLLPFFSASVLSLTVRTPVIFFIGAALWPY---SFGAMASLDGA 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +++ E+ +G + +L+ + + G++I G L ++ + + L +L Sbjct: 69 RIADILLREVAIGLLLAILLALPFWVMHGLGALIDYQRGALLSSAYDPISGVDTSELANL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTI-PIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + + SY P+ L ++ + + T +I LS Sbjct: 129 FNLFFAAVFLQGGGLTLLLEVFLGSYQLCDPLEPSLPSLAKVTTLLQTMATRILI---LS 185 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 SP L ++ IS+GLL++ PQ+ + I+ G+ + + ++ + + Sbjct: 186 SPVLVVLLLIEISLGLLSRFAPQMNAFAIALTLKSGVTFFIILIYFAPLLPEIFRQY 242 >gi|16761665|ref|NP_457282.1| virulence associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143149|ref|NP_806491.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052432|ref|ZP_03345310.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425710|ref|ZP_03358460.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580231|ref|ZP_03362057.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609306|ref|ZP_03369132.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649912|ref|ZP_03379965.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853012|ref|ZP_03382544.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289804462|ref|ZP_06535091.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829390|ref|ZP_06547002.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25355678|pir||AD0851 secretory protein (associated with virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503966|emb|CAD05995.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138782|gb|AAO70351.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 263 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 83/230 (36%), Gaps = 5/230 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ S L RV LP L+ + R + ++ + P + V Sbjct: 12 LVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPPFLSVA-- 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+ E +G + G L+ + G +I G L +S+ ++ + + + + Sbjct: 70 -MIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + + L KSY E + + L L+S Sbjct: 129 LNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 P + ++ + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 187 PVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236 >gi|322715874|gb|EFZ07445.1| needle complex export protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 263 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 5/230 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ S L RV LP L+ + R + ++ + P + + V Sbjct: 12 LVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEVPPFLSVA-- 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+ E +G + G L+ + G +I G L +S+ ++ + + + + Sbjct: 70 -MIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + + L KSY E + + L L+S Sbjct: 129 LNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 P + ++ + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 187 PVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236 >gi|56414840|ref|YP_151915.1| virulence secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194443393|ref|YP_002042129.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197363768|ref|YP_002143405.1| virulence secretory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198246014|ref|YP_002216857.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353831|ref|YP_002227632.1| virulence associated secretory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858150|ref|YP_002244801.1| secretory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|56129097|gb|AAV78603.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194402056|gb|ACF62278.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197095245|emb|CAR60796.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197940530|gb|ACH77863.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273612|emb|CAR38599.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709953|emb|CAR34307.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326628940|gb|EGE35283.1| Surface presentation of antigens protein spaR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 263 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 83/230 (36%), Gaps = 5/230 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ S L RV LP L+ + R + ++ + P + V Sbjct: 12 LVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPPFLSVA-- 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+ E +G + G L+ + G +I G L +S+ ++ + + + + Sbjct: 70 -MIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + + L KSY E + + L L+S Sbjct: 129 LNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 P + ++ + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 187 PVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236 >gi|16766194|ref|NP_461809.1| needle complex export protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615800|ref|YP_001589765.1| hypothetical protein SPAB_03591 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550263|ref|ZP_02344020.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993123|ref|ZP_02574218.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230958|ref|ZP_02656016.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168242625|ref|ZP_02667557.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261989|ref|ZP_02683962.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463977|ref|ZP_02697894.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820415|ref|ZP_02832415.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449888|ref|YP_002046848.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469478|ref|ZP_03075462.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249484|ref|YP_002147785.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262517|ref|ZP_03162591.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389091|ref|ZP_03215703.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928069|ref|ZP_03219269.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224584666|ref|YP_002638464.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909655|ref|ZP_04653492.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|730799|sp|P40701|SPAR_SALTY RecName: Full=Surface presentation of antigens protein spaR gi|404292|emb|CAA51926.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421436|gb|AAL21768.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365164|gb|ABX68932.1| hypothetical protein SPAB_03591 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408192|gb|ACF68411.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455842|gb|EDX44681.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633460|gb|EDX51874.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213187|gb|ACH50584.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240772|gb|EDY23392.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199606189|gb|EDZ04734.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322391|gb|EDZ07588.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324702|gb|EDZ12541.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328707|gb|EDZ15471.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334620|gb|EDZ21384.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338237|gb|EDZ25001.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342880|gb|EDZ29644.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349133|gb|EDZ35764.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469193|gb|ACN47023.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248024|emb|CBG25857.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995016|gb|ACY89901.1| needle complex export protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159447|emb|CBW18965.1| type III secretion system secretory apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913906|dbj|BAJ37880.1| type III secretion system apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087293|emb|CBY97058.1| Surface presentation of antigens protein spaR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223437|gb|EFX48503.1| Surface presentation of antigens protein SpaR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614294|gb|EFY11225.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621642|gb|EFY18495.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624503|gb|EFY21336.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628834|gb|EFY25617.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633439|gb|EFY30181.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635985|gb|EFY32693.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639693|gb|EFY36378.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646876|gb|EFY43379.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650644|gb|EFY47049.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322658964|gb|EFY55217.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664469|gb|EFY60663.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668282|gb|EFY64439.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673738|gb|EFY69839.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677799|gb|EFY73862.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681371|gb|EFY77403.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683773|gb|EFY79783.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131240|gb|ADX18670.1| needle complex export protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193838|gb|EFZ79041.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200308|gb|EFZ85390.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203189|gb|EFZ88218.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205564|gb|EFZ90529.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210075|gb|EFZ94978.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216378|gb|EGA01105.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221125|gb|EGA05556.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226947|gb|EGA11129.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230769|gb|EGA14887.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234880|gb|EGA18966.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238919|gb|EGA22969.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241619|gb|EGA25650.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248234|gb|EGA32170.1| type III secretion system protein SpaR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251182|gb|EGA35055.1| type III secretion system protein SpaR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256066|gb|EGA39804.1| type III secretion system protein SpaR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263201|gb|EGA46739.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264296|gb|EGA47802.1| type III secretion system protein SpaR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271122|gb|EGA54550.1| type III secretion system protein SpaR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989760|gb|AEF08743.1| needle complex export protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 263 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 83/230 (36%), Gaps = 5/230 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ S L RV LP L+ + R + ++ + P + V Sbjct: 12 LVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPPFLSVA-- 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+ E +G + G L+ + G +I G L +S+ ++ + + + + Sbjct: 70 -MIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + + L KSY E + + L L+S Sbjct: 129 LNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 P + ++ + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 187 PVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236 >gi|182440973|dbj|BAG24098.1| HrcT [Pseudomonas cichorii] Length = 265 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 104/232 (44%), Gaps = 3/232 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++L + + R+ C+ L+P + + + +R +A ++ +P + +++ Q+ + Sbjct: 13 IIALTVGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPAIRESLAGQSL-DWLD 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E +G + GLL+ + + G + G + + + + L ++ Sbjct: 72 LTSLLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELGHML 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLS 186 + +L + + + + + SY P Q + F ++ ++ +TF M+ + Sbjct: 132 KQVMILLMILGGGYASLTQIMWDSYLVWPATQWVPVTGPEGFEVYLKLVASTFRFMVLYA 191 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 +P + ++ + +L+ PQ+ + ++ P +G FL L + ++ + Sbjct: 192 APLVGLLLLIEFGMAILSLYSPQLQVSTLAMPAKSLVGLGFLVLYMPMLTWL 243 >gi|323166470|gb|EFZ52234.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella sonnei 53G] Length = 182 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 2/172 (1%) Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132 + E+ +G + + + GS+I G L +S+ ++ + + L + Sbjct: 1 MFKEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFS 60 Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 + + ++ SY P+ + +F S+ + L + L+SP + Sbjct: 61 AVVFLYSGGMVFILESIQLSYNICPLFSQCSFR--VSNILTFLTLLASQAVILASPVMIV 118 Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244 ++ + +G+L++ PQ+ + +S L + + I + FL Sbjct: 119 LLLSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 170 >gi|76574807|gb|ABA47281.1| HrcT [Pseudomonas cichorii] Length = 265 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 102/232 (43%), Gaps = 3/232 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++L + + R+ C+ L+P + + + +R +A ++ +P + ++ Q + Sbjct: 13 IIALTVGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPSIRASLAGQTL-DWLD 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E +G + GLL+ + + G + G + + + + L ++ Sbjct: 72 LTALLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELGHML 131 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLS 186 + +L + + + + + SY P Q + F ++ ++ +TF M+ + Sbjct: 132 KQVMILLMILGGGYASLTQIMWDSYLVWPATQWVPVTGPEGFEVYLKLVASTFRFMVLYA 191 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 +P + ++ + +L+ PQ+ + ++ P +G FL L + ++ + Sbjct: 192 APLVGLLLLIEFGMAILSLYSPQLQVSTLAMPAKSLVGLGFLVLYMPMLTWL 243 >gi|62181390|ref|YP_217807.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129023|gb|AAX66726.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 263 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 5/230 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ S L RV LP L+ + R + ++ + P + + V Sbjct: 12 LVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEVPPFLSVA-- 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+ E +G + G L+ + G +I G L +S+ ++ + + + + Sbjct: 70 -MIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + + L KSY E + + L L+S Sbjct: 129 LNMSAAVVHLQNGGLVTMVDVLTKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLAS 186 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 P + ++ + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 187 PVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236 >gi|292487014|ref|YP_003529884.1| type III secretion protein HrcT [Erwinia amylovora CFBP1430] gi|292900601|ref|YP_003539970.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|1181175|gb|AAB06007.1| HrcT [Erwinia amylovora] gi|291200449|emb|CBJ47578.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552431|emb|CBA19476.1| Type III secretion protein HrcT [Erwinia amylovora CFBP1430] gi|312171083|emb|CBX79342.1| Type III secretion protein HrcT [Erwinia amylovora ATCC BAA-2158] Length = 265 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L R+ C++L+P S + + VR +A S++ L + +Q + Sbjct: 12 FLFALTLGAARIYPCLILMPVFSFNILKGMVRTGVVLALSLMPAIGLQAQLAVQ-MPDWP 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + GLL+ + Q G++ G + + + TPL L Sbjct: 71 QLIGLILKEVTIGILLGLLLGMPFWLFQSAGALFDNQRGALIGGQLNPALGSDVTPLGLL 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ Q L + F ++ +L TF ++ Sbjct: 131 LQQTLILLLILGIGLSGITQIIWDSYRIWPVLQWLPLPHEEGFKQYLALLADTFTHIIIY 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ + SI +L+ PQ+ ++ +S P +G LF L I + Sbjct: 191 AGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFVLYIPTL 240 >gi|218988948|gb|ACL13611.1| surface presentation of antigens protein SpaR [Salmonella enterica subsp. salamae serovar Sofia] Length = 263 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 5/222 (2%) Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75 RV LP L+ + R + ++ + P + + F++ A LV+ Sbjct: 20 FARVAPIFFFLPFLNSGVLSGAPRNAIIVLVALGVWP--HELSEAPPFLSVA-MIPLVLQ 76 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 E +G + G L+ + G +I G L +S+ ++ + + + + + + + Sbjct: 77 EAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANFLNMFAAVV 136 Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 + L KSY E + + L L+SP + ++ Sbjct: 137 YLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLASPVVLVLLL 194 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 + +GLL++ PQ+ + IS G+ L + L ++ Sbjct: 195 SEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236 >gi|190894061|ref|YP_001984355.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] gi|190699722|gb|ACE93805.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] Length = 269 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 81/230 (35%), Gaps = 3/230 (1%) Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +++ P S+ I +R A+ S + F + + L + + + L M EL Sbjct: 27 LGILLIFPIFSLFSIVGILRFGLAIGLSAPSVAFAYSVLALGD-TSWFDLAALSMKELCF 85 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G+ + + Q G + G N ++L PL SL+ I L+ Sbjct: 86 GALIGIGLGIPFWAAQAAGDMTDVYRGANAANLFDQINALETAPLGSLMMSIALVLFVSA 145 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + KS+ P+ + + + + + F L++PF+ Sbjct: 146 GGIIDLVAIFYKSFEFWPLFKLMPAMPDDPLDMILGVFGRLFKAAGLLAAPFMIVTCALE 205 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +S+ + + Q P+ + L + I F ++ GF Sbjct: 206 LSLAFVGRSSKQFPLNDSLPAIKNFAVVVILVIYTAFISSYFHDLWIDGF 255 >gi|21492902|ref|NP_659977.1| type III secretion system translocation protein [Rhizobium etli CFN 42] gi|21467327|gb|AAM54990.1| type III secretion system translocation protein [Rhizobium etli CFN 42] gi|327192843|gb|EGE59769.1| type III secretion system translocation protein [Rhizobium etli CNPAF512] Length = 269 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 3/230 (1%) Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +++ P S+ I +R A+ S + F + + + + + + L M EL Sbjct: 27 LGILLIFPIFSLFSIVGILRFGLAIGLSAPSVAFAYSVLAIGD-TSWFDLAALSMKELCF 85 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G+ + + Q G + G N ++L PL SL+ I L+ Sbjct: 86 GALIGMGLGIPFWAAQAAGDMTDVYRGANAANLFDQINALETAPLGSLMMSIALVIFVSA 145 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + KS+ P+ + + + + + F L++PF+ Sbjct: 146 GGIIDLVAIFYKSFEFWPLFKLMPAMPDDPLDMILGVFGRLFKAAGLLAAPFMIVTCALE 205 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +S+ + + Q P+ + L + I F ++ GF Sbjct: 206 LSLAFVGRSSKQFPLNDSLPAIKNFAVVVILVIYTAFISSYFHDLWIDGF 255 >gi|296162492|ref|ZP_06845283.1| type III secretion system inner membrane R protein [Burkholderia sp. Ch1-1] gi|295887305|gb|EFG67132.1| type III secretion system inner membrane R protein [Burkholderia sp. Ch1-1] Length = 240 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 12/245 (4%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 + P + R + ++P P+ +L + I +LP Sbjct: 1 MDPIRYLEGFAFCTIRPAVALSMIPF--SQSGPLGSKLRVPLLLVIAMLPQQVGWPPHPV 58 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 ++VE+ G V GLL+ G+++ G Sbjct: 59 PA--------MVVEVATGVVLGLLLGTIFHAAGAAGAMLDQQGGYASAAMYDPHFQQEAA 110 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFM 180 L L L+ +F ++ P GQ + L Sbjct: 111 LFEQLFLQFAALTLFTGPGLPLLFGFFTDAWVLWPPGQWRGDLVDVFRQLALRNLADVLT 170 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +RL++P L ++ +++ GL+++ ++ + + G+ + LS+ + Q Sbjct: 171 EGVRLATPLLGLMLLVDVAFGLMSRHAKRLNPFATARTVKAGVLTFAAVLSVPALFAQLR 230 Query: 241 HSFLY 245 +F + Sbjct: 231 IAFDH 235 >gi|238023718|ref|YP_002907950.1| type III secretion-associated protein [Burkholderia glumae BGR1] gi|237878383|gb|ACR30715.1| Type III secretion-associated protein [Burkholderia glumae BGR1] Length = 277 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 4/234 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + VR + FS + + + ++ A ++ + E Sbjct: 27 VRLFVIVTIFPPSADGVLQGPVRNAIVLLFSTFVA--YGQPLAFADGLHGAALVEIGLRE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G V G + G I G N + TP +L+ + +A Sbjct: 85 GMIGLVLGFAASSVFWVAECAGYYIDDLTGYNNAQVQNPLRNEQATPTATLLQQVATMAF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYI 194 W + + L +SY P+ ++ N+ +F T M + +L++P + + Sbjct: 145 WSLGGMTFLLGTLYQSYHWWPLNAPTIDVSNVLEAFAMKQTDTLMQQVAKLAAPAVMILL 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + + + K ++ + +S P + L L L + + V Q F Sbjct: 205 LIDFAFAFAAKSASKLELMGLSQPVKGAVAVLLLALFVGVFVDQVRDQLTLSAF 258 >gi|330957486|gb|EGH57746.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. maculicola str. ES4326] Length = 264 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 89/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ VR +++ P + ++ + N Sbjct: 11 FMLGMGLAMARLAPCMVLVPAFCFKYLKGTVRYAVVAVMAMIPAPAITRALESLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L N F+ L T M+ Sbjct: 130 FQETLIMLVILTGGLSLITQVIWDSYNVWPPTAWLPGMNAGGLDVFLEQLNQTMQHMMLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSVLAMPAKSMAGLAFLLIYLPTLL 240 >gi|194426389|ref|ZP_03058944.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B171] gi|14422433|dbj|BAB60840.1| epaR [Escherichia coli] gi|194415697|gb|EDX31964.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B171] Length = 261 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 11/235 (4%) Query: 8 IMMSLFLIVCRVGS------CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61 ++ + L CR+ LLP + IP VR + S L+ + Sbjct: 12 LLAATALGFCRLAPTFYLLPFFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELLNL 71 Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121 N ++ A ++ E+ +G L+ GS I G L +++ + + Sbjct: 72 NEIDIALFA---AREIIIGLFIACLLASPFWMFLAIGSFIDNQRGATLSSTLDPATGVDT 128 Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181 + L L + + + L +SY G + + Sbjct: 129 SELARLFNLFSAAVYLTKGGMNFILETLWQSYNLWLSGNFNFPK--LEPLFSYINNIMTH 186 Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 + +SP + + +GLL Q+ + IS L L L + I+ Sbjct: 187 TIVYASPVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPIL 241 >gi|71388157|gb|AAZ31291.1| EpaR [Escherichia coli] Length = 195 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 5/184 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L + N ++ A Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALFQHYHYELSTLNEIDIA 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 ++ E+ +G L+ GS I G L +++ + + + L L Sbjct: 72 LFA---AREIIIGLFIACLLSSPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187 + + + L +SY P G + + + +S Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186 Query: 188 PFLF 191 P + Sbjct: 187 PVIA 190 >gi|218674845|ref|ZP_03524514.1| type III secretion system translocation protein [Rhizobium etli GR56] Length = 269 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 3/230 (1%) Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +++ P S+ I +R A+ S + F + + + + + + L M EL Sbjct: 27 LGILLIFPIFSLFSIVGILRFGLAIGLSAPSVAFAYSVLAIGD-TSWFDLAALSMKELCF 85 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G+ + + Q G + G N ++L PL SL+ I L+ Sbjct: 86 GALIGMGLGIPFWAAQAAGDMTDVYRGANAANLFDQINALETAPLGSLMMSIALVIFVSA 145 Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + KS+ P+ + + + + + F L++PF+ Sbjct: 146 GGIIDLVAIFDKSFEFWPLFKLMPAMPDDPLDMILGVFGRLFKAAGLLAAPFMIVTCALE 205 Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 +S+ + + Q P+ + L + I F ++ GF Sbjct: 206 LSLAFVGRSSKQFPLNDSLPAIKNFAVVVILVIYTAFISSYFHDLWIDGF 255 >gi|51103121|gb|AAT96264.1| HrcT [Pseudomonas viridiflava] gi|51103163|gb|AAT96305.1| HrcT [Pseudomonas viridiflava] Length = 265 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 98/230 (42%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++L + + R+ C+ L+P + + + +R +A +++ +P + + + Sbjct: 12 TIIALTIGMARLYPCLFLIPAFAFTELKGMLRHAIVLALALIPMPAIRMGLTGHEL-DWL 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E +G + GLL+ + + G + G + + + + L + Sbjct: 71 DLCALLLKESVIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELGHM 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRL 185 + + +L + + + + + SY P Q + F ++ ++ +TF M+ Sbjct: 131 LKQVLILLMILGGGYASLTQIMWDSYLVWPATQWVPVTGAAGFEVYLKLVASTFRFMVLY 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++P + ++ + +L+ PQ+ + ++ P G FL L + ++ Sbjct: 191 AAPLVGLLLMIEFGMAILSLYSPQLQVSTLAMPAKSLAGLFFLVLYMPML 240 >gi|51103204|gb|AAT96345.1| HrcT [Pseudomonas viridiflava] Length = 265 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 98/230 (42%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++L + + R+ C+ L+P + + + +R +A +++ +P + + + Sbjct: 12 TIIALTIGMARLYPCLFLIPAFAFTELKGMLRHAIVLALALIPMPAIRIGLAGHEL-DWL 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E +G + GLL+ + + G + G + + + + L + Sbjct: 71 DLCALLLKESVIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELGHM 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRL 185 + + +L + + + + + SY P Q + F ++ ++ +TF M+ Sbjct: 131 LKQVLILLMILGGGYASLTQIMWDSYLVWPATQWVPVTGAAGFEVYLKLVASTFRFMVLY 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++P + ++ + +L+ PQ+ + ++ P G FL L + ++ Sbjct: 191 AAPLVGLLLMIEFGMAILSLYSPQLQVSTLAMPAKSLAGLFFLVLYMPML 240 >gi|12082759|gb|AAG48606.1|AF306650_3 SpaR [Sodalis glossinidius] Length = 263 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 95/237 (40%), Gaps = 7/237 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++L ++ R+ LLP L+ +++ + VR L P+ + ++ A Sbjct: 12 WLITLAVVSARITPAFFLLPFLAPAWLSLTVRTPVIFFIGAALWPY---SFGAMASLDGA 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + +++ E+ +G + +L+ + + G++I G L ++ + + L Sbjct: 69 RIADILLREVAIGLLLAILLALPFWVMHGLGALIDYQRGALLSSAYDPISGVDTSELAKF 128 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTI-PIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 + + + SY P+ L ++ + + T +I LS Sbjct: 129 FNLFFAAVFLQGGGLTLLLEVFLGSYQLCDPLEPSLPSLAKVTTLLQTMATRILI---LS 185 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 SP L ++ IS+GLL++ PQ+ + I+ G+ + + ++ + + Sbjct: 186 SPVLVVLLLIEISLGLLSRFAPQMNAFAIALTLKSGVTFFIILIYFAPLLPEIFRQY 242 >gi|207108608|ref|ZP_03242770.1| flagellar biosynthesis protein FliR [Helicobacter pylori HPKX_438_CA4C1] Length = 120 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 49/113 (43%) Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194 L + FHHQ+ + S +P+GQ + + + V F+I ++ P L + Sbjct: 1 MLLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILCLVL 60 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + +I G++ K PQ + I P I +G + + L I+ +F F Sbjct: 61 LSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 113 >gi|330950826|gb|EGH51086.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae Cit 7] Length = 264 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 89/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N Sbjct: 11 FMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAIPRALESLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L N F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWLPGMNAGGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLM 240 >gi|188532664|ref|YP_001906461.1| HrcT protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027706|emb|CAO95559.1| HrcT protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 265 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 102/230 (44%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L R+ C++L+P S + + VR A+A +++ L + +Q + Sbjct: 12 FIFALTLGAARIYPCLILMPVFSFNILKGMVRTGVALALALMPAIGLQAQLAVQ-MPDWP 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+ E+ +G + GLL+ + Q G++ G + + + TPL L Sbjct: 71 QLIGLVLKEVTIGILLGLLLGMPFWLFQSVGALFDNQRGALIGGQLNPALGSDFTPLGLL 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + V + SY P+ Q L + F ++ +L TF ++ Sbjct: 131 LQQTLILLLMLGIGLRGVTQIIWDSYRIWPVLQWLPLPHEEGFQQYLALLADTFTHIIIY 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ + SI +L+ PQ+ ++ +S P +G LF + I + Sbjct: 191 AGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFVIYIPTL 240 >gi|75906100|gb|ABA29442.1| putative type III secretion system protein [Candidatus Hamiltonella defensa] Length = 215 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 75/196 (38%), Gaps = 4/196 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L + R +++ P + + +R +A ++ + P + + + + Sbjct: 7 WLTALGLAMARPLGVLLIFPVFTTHSLGSSLLRNGLLVAIALPITPITISSSLIHSHI-L 65 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ +M+EL +G G + ++ S+I T G + +++ + + + Sbjct: 66 IHWCFAIMMELVIGVTIGFFAALPFWAIEMAASLIDTMRGATMASAINPTMGMQSSVFGI 125 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLR 184 L + + + + + + SY + G+ +FS F + Sbjct: 126 LFSQVLSVLFLIAGGFNSLLRVIYGSYDLLYPGEKILFFGEKLFSFIKMQWGLMFELCFN 185 Query: 185 LSSPFLFFYIVFNISI 200 + P L ++ ++S+ Sbjct: 186 FALPALLVMLITDLSL 201 >gi|818893|gb|AAB05077.1| HrpX [Pseudomonas syringae pv. syringae] gi|148562542|gb|ABQ88361.1| HrcT [Pseudomonas syringae pv. syringae] Length = 264 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 89/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N Sbjct: 11 FMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAITRALESLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L N F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWLPGMNAGGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|86157786|ref|YP_464571.1| type III secretion system inner membrane R protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774297|gb|ABC81134.1| type III secretion system inner membrane R protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 250 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 1/225 (0%) Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 P L++ R + P L +P +VRL A+A + + + + Sbjct: 4 PLATAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLALALALTWAVH-AGAGSPAVAPPA 62 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 A + + E G + GL R G + + GL + + + Sbjct: 63 GLAGLAGAALAETATGLLAGLAARWTLDAALAAGHLAGLSAGLGYSALVDPITGAESSAV 122 Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184 + + ++ + H + LV+S P G + + S + + +R Sbjct: 123 SQTVFVVAQAVAVALGVHREAVAWLVRSAVAWPPGAAPDPAGLASRAAGQAILSVALAVR 182 Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229 L+ P + ++ ++ + ++ ++ PQ+ + + L L Sbjct: 183 LAFPVMAAALLGHLLLAVMGRMAPQLSLSNVGFSASTLAAGLALY 227 >gi|330969106|gb|EGH69172.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. aceris str. M302273PT] Length = 264 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 89/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N Sbjct: 11 FMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAISKALESLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P + N F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWMPGMNASGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|66044457|ref|YP_234298.1| type III secretion protein HrcT [Pseudomonas syringae pv. syringae B728a] gi|289678001|ref|ZP_06498891.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. syringae FF5] gi|63255164|gb|AAY36260.1| type III secretion protein HrcT [Pseudomonas syringae pv. syringae B728a] gi|330937037|gb|EGH41125.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. pisi str. 1704B] gi|330975862|gb|EGH75928.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 264 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 89/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N Sbjct: 11 FMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAISKALESLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P + N F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWMPGMNAGGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|257487236|ref|ZP_05641277.1| type III secretion component protein HrcT [Pseudomonas syringae pv. tabaci ATCC 11528] gi|238577785|gb|ACR46696.1| HrcT [Pseudomonas syringae pv. tabaci] gi|331009150|gb|EGH89206.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 264 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R ++V P + + + N Sbjct: 11 FMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNHTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|330984962|gb|EGH83065.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. lachrymans str. M301315] Length = 264 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R +++ P + + + N Sbjct: 11 FMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMIPAPAISRALGSLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|330812428|ref|YP_004356890.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|312597803|gb|ADQ89918.1| RscT [Pseudomonas fluorescens] gi|327380536|gb|AEA71886.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 265 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++S+ L + R+ L+P ++ R A ++ P + + + VN Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L+ EL LG + G+L+ + + G+++ G + + + TPL L Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGSDTTPLGLL 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRL 185 + +L L + + SY + F F+ +L FM M+ Sbjct: 131 FKEMTILLLVTTLGIGTLTQVIWDSYLVWSPTVWFPLPGADGFGVFLGLLGEMFMHMMLY 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++PF+ ++ S+ LL+ PQ+ ++ ++ P +G FL + + Sbjct: 191 AAPFIGLLLLVEFSLALLSLYSPQLQVFVLAMPAKSLIGLGFLLFYLPTL 240 >gi|298485947|ref|ZP_07004022.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159533|gb|EFI00579.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 264 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R ++V P + + + N Sbjct: 11 FMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGDL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|71736218|ref|YP_273542.1| type III secretion component protein HrcT [Pseudomonas syringae pv. phaseolicola 1448A] gi|3282783|gb|AAC25071.1| HrcT [Pseudomonas syringae pv. phaseolicola] gi|42562004|gb|AAS20446.1| HrcT [Pseudomonas syringae pv. phaseolicola] gi|71556771|gb|AAZ35982.1| type III secretion component protein HrcT [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322957|gb|EFW79047.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. glycinea str. B076] gi|320329920|gb|EFW85908.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. glycinea str. race 4] gi|330874620|gb|EGH08769.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. glycinea str. race 4] Length = 264 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R ++V P + + + N Sbjct: 11 FMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|307947534|ref|ZP_07662867.1| putative type III secretion apparatus protein [Roseibium sp. TrichSKD4] gi|307769352|gb|EFO28580.1| putative type III secretion apparatus protein [Roseibium sp. TrichSKD4] Length = 267 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 86/239 (35%), Gaps = 5/239 (2%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + L R M +++ + V R+ FA+A ++ + L+ Y Sbjct: 20 MVLATARPFGLAMTFVAFGWAHLNIGVLRMIFAIAIAMPVAIPLFSLEQSTIPELPYPYV 79 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 +++ E+F+G V G + + +G +I G + TP L + Sbjct: 80 LVLVKEIFIGGVFGWVASLPFTIAASSGHIIDGYRG--GASGDPDPTGGQVTPYAKLFLV 137 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV--NMLQTTFMIMLRLSSP 188 I L ++ V + +Y P+ L N+L+ L +++P Sbjct: 138 ISLFLFANLNGFWIVTDTIYSTYEVWPMFDALPLERGVEPITIFNVLEGLVSSALVIATP 197 Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 L V ++ L K QI + ++ +G + L + I++ F + + + Sbjct: 198 LLLVMFVADLIFLLTTKFGKQINVSHLAFSVKNTIGIILLPVMCLILIRIFKNELSHMY 256 >gi|289623685|ref|ZP_06456639.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647641|ref|ZP_06478984.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. aesculi str. 2250] gi|330871289|gb|EGH05998.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 264 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R ++V P + + + N Sbjct: 11 FMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLMIKEAVLGTLLGLLLYAPFWMCASVGALLDSQRGALSGGQLNPALGPDATPLGDL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|310766416|gb|ADP11366.1| HrcT [Erwinia sp. Ejp617] Length = 265 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L R+ C++L P S + + VR +A S++ L + +Q + Sbjct: 12 FLFALTLGAARIYPCLILTPVFSFNILKGMVRTGVVLALSLMPAIGLQAQLAVQ-MPDWP 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + GLL+ + Q G++ G + + + TPL L Sbjct: 71 QLIGLMLKEVTIGILLGLLLGMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGLL 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ Q L F ++ +L TF ++ Sbjct: 131 LQQTLILLLILSIGLSGITQIIWDSYRIWPVLQWLPLPQEEGFKQYLALLADTFTHIIIY 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ + SI +L+ PQ+ ++ +S P +G LF L I + Sbjct: 191 AGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFLLYIPTL 240 >gi|330819411|ref|YP_004348273.1| Type III secretion protein SpaR/YscT/HrcT [Burkholderia gladioli BSR3] gi|327371406|gb|AEA62761.1| Type III secretion protein SpaR/YscT/HrcT [Burkholderia gladioli BSR3] Length = 294 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 4/234 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P + + VR + FS + + ++ A +L + E Sbjct: 27 VRLFVIMTIFPPSADGVLQGPVRNAIVILFSTFVA--YGQPLAFGEQLHGAALVELGLRE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G V G + G I G N + TP +L+ + +A Sbjct: 85 GMIGLVLGFAASSVFWVAECAGYYIDDLTGYNSAQVQNPLRNEQATPTATLLQQVATVAF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIML-RLSSPFLFFYI 194 W + + L +SY P+ ++ ++ +F T M + +L++P + + Sbjct: 145 WSLGGMSFLLGTLYESYRWWPLTAHSVDVSSVLEAFALKETDTLMQQVAKLAAPAVMILL 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + + + K ++ + +S P + L L L + + V Q F Sbjct: 205 LIDFAFAFAAKSASKLELMGLSQPVKGAVAVLLLALFVGVFVDQVRDQLTLSAF 258 >gi|259909720|ref|YP_002650076.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcT protein [Erwinia pyrifoliae Ep1/96] gi|224965342|emb|CAX56874.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcT protein [Erwinia pyrifoliae Ep1/96] gi|283479806|emb|CAY75722.1| Type III secretion protein HrcT [Erwinia pyrifoliae DSM 12163] Length = 265 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L R+ C++L P S + + VR +A S++ L + +Q + Sbjct: 12 FLFALTLGAARIYPCLILTPVFSFNILKGMVRTGVVLALSLMPAIGLQAQLAVQ-MPDWP 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + GLL+ + Q G++ G + + + TPL L Sbjct: 71 QLIGLMLKEVTIGILLGLLLGMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGLL 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ Q L + F ++ +L TF ++ Sbjct: 131 LQQTLILLLILSIGLSGITQIIWDSYRIWPVLQWLPLPHEEGFQQYLALLADTFTHIIIY 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ + SI +L+ PQ+ ++ +S P +G LF + I + Sbjct: 191 AGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFVIYIPTL 240 >gi|76152318|gb|ABA39819.1| HrcT [Erwinia pyrifoliae] Length = 265 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L R+ C++L P S + + VR +A S++ L + +Q + Sbjct: 12 FLFALTLGAARIYPCLILTPVFSFNILKGMVRTGVVLALSLMPAIGLQAQLAVQ-MPDWP 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ +G + GLL+ + Q G++ G + + + TPL L Sbjct: 71 QLIGLMLKEVTIGILLGLLLGMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGLL 130 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185 + +L L + + + SY P+ Q L + F ++ +L TF ++ Sbjct: 131 LQQTLILLLILGIGLSGITQIIWDSYRIWPVLQWLPLPHEEGFQQYLALLADTFTHIIIY 190 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 + P + ++ + SI +L+ PQ+ ++ +S P +G LF + I + Sbjct: 191 AGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFVIYIPTL 240 >gi|167841196|ref|ZP_02467880.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia thailandensis MSMB43] Length = 240 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 5/211 (2%) Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98 RL A+A ++ LPF + + + + E LG + G+ + G Sbjct: 18 RLPIALALALPSLPFAYHMMPSALPAGQIAFVAA--REFALGVLTGMFFLPLFSVPRAVG 75 Query: 99 SVISTAIGLNLQTSMGISDSL-AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157 + + GL + + + T + L + S P Sbjct: 76 TFVDQQAGLMSVQLFDPTSTERSATVFADVFEQSALFMFVASGGFGALGELYAMSQRFWP 135 Query: 158 I--GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFI 215 + ++ +R + PF+ I+ IGL+ + PQ+ I Sbjct: 136 VTEMNAPPIADVTDIARQGFNAMVDTAIRHAGPFVATLILVEYGIGLIGRAAPQLNILTT 195 Query: 216 STPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 S + + + + + F + Sbjct: 196 SVAIKLVFALVLIAIVGPGFIDAFVDALHEA 226 >gi|91782704|ref|YP_557910.1| putative type III secretion system innermembrane protein, HcrT/YscT-like [Burkholderia xenovorans LB400] gi|91686658|gb|ABE29858.1| Putative type III secretion system innermembrane protein, HcrT/YscT-like protein [Burkholderia xenovorans LB400] Length = 265 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 72/205 (35%), Gaps = 2/205 (0%) Query: 43 AMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVIS 102 ++ + L + + Q + + E+ G V GLL+ G+V+ Sbjct: 56 SVGIVLRLPLMIAIAMLPQQVGWPPHLWAGMFFEMATGAVLGLLLGTIFHAAGAAGAVLD 115 Query: 103 TAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL 162 G + SL L L+ ++ ++ P G+ Sbjct: 116 QQGGYTSAAIYDPNFQQEAALFESLFLQFAALTLFTGPGLPLLYGFFTDAWVLWPPGRWR 175 Query: 163 -NFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220 + ++F L + LRL+SP L ++ +I+ GL+++ ++ + + Sbjct: 176 GDLVDVFGQLAQRNLADSLTEGLRLASPLLGLVLLVDIAFGLMSRHAKRLNPFATARTVK 235 Query: 221 IGLGSLFLCLSIEIIVYQFSHSFLY 245 + + LS+ + Q +F + Sbjct: 236 AAVLTFAAVLSVPALFAQLRLAFDH 260 >gi|222082191|ref|YP_002541556.1| type III secretion apparatus protein SpaR/YscT/HrcT [Agrobacterium radiobacter K84] gi|221726870|gb|ACM29959.1| type III secretion apparatus protein SpaR/YscT/HrcT [Agrobacterium radiobacter K84] Length = 271 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 3/195 (1%) Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 + + P S+ I +R+ A+ S + F + + + L + E Sbjct: 29 LGILSIFPLFSLFSITGLLRIGLAIGLSAPAVAFAHAVL-AEGQTSYLILGVLFLKEFVF 87 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 G + G+ + + Q G + G N ++L T L S++ I L Sbjct: 88 GGLIGMGLGIPFWAAQSAGDMTDVYRGANAANLFDQVNALETTTLGSVLMSIALAIFVAT 147 Query: 140 DFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197 + KS+ P+ G+ +++ F + L++PF+ Sbjct: 148 GGITDLVAIFYKSFEFWPLFTLKPAFDGDALKIILDIFIQLFRMGTLLAAPFVIIIGAIE 207 Query: 198 ISIGLLNKLVPQIPI 212 +S+G + + Q P+ Sbjct: 208 LSLGFVGRSAKQFPL 222 >gi|266618908|ref|ZP_06111846.1| conserved domain protein [Clostridium botulinum Bf] gi|263528672|gb|EEZ28381.1| conserved domain protein [Clostridium botulinum Bf] Length = 150 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 58/144 (40%), Gaps = 1/144 (0%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ LI R+ ++P P+ ++ A+ + +L+ + D + N Sbjct: 8 TAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINTINNSTAL 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E+ G + G + + ++ G+++ +G + T S + T L ++ Sbjct: 67 IFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVTFLERILY 126 Query: 130 IIGLLALWVIDFHHQVFYALVKSY 153 + ++ID HH + + + Sbjct: 127 WFSTIVFFLIDGHHMLIKGFSRKF 150 >gi|237678815|emb|CAQ57542.1| RHCT protein [Bradyrhizobium elkanii] Length = 273 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 79/198 (39%), Gaps = 4/198 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFVNRAYYSKLVMV 75 R +++LP + I +R +A + LP + L + L + Sbjct: 28 ARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLPQIKLGLEALDPNTRLVSVAMLGLK 87 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM-GISDSLAETPLNSLIGIIGLL 134 E+F+G + G+L+ + +Q G +I T G++ Q + + + +G+ + Sbjct: 88 EVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQVAAEDPATHSQASGTGLFLGVTAVT 147 Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192 ++ + +L SY P+ + L + +L + L ++ P L Sbjct: 148 IFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTAQGAMECLALLDHIMLTTLLVAGPVLAL 207 Query: 193 YIVFNISIGLLNKLVPQI 210 ++ ++S+ +L + Q+ Sbjct: 208 LLLIDVSVMMLGRFASQL 225 >gi|213420255|ref|ZP_03353321.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 229 Score = 68.5 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 72/194 (37%), Gaps = 3/194 (1%) Query: 45 AFSIVLLPFLWDT-IDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVIST 103 A I++ +W ++ LV+ E +G + G L+ + G +I Sbjct: 11 AIIILVALGVWPHALNEAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDN 70 Query: 104 AIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN 163 G L +S+ ++ + + + + + + + + L KSY E Sbjct: 71 QRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECT 130 Query: 164 FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223 + + L L+SP + ++ + +GLL++ PQ+ + IS G+ Sbjct: 131 PS--LPPLLTFINQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGI 188 Query: 224 GSLFLCLSIEIIVY 237 L + L ++ Sbjct: 189 AVLIMLLYFSPVLP 202 >gi|293449183|ref|ZP_06663604.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B088] gi|291322273|gb|EFE61702.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli B088] Length = 207 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 2/173 (1%) Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 +N + E+ +G L+ GS I G L +++ + + + Sbjct: 17 LNEIDIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSE 76 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 L L + + + L +SY P G + + + Sbjct: 77 LARLFNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTI 134 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 +SP + + +GLL Q+ + IS L L L + I+ Sbjct: 135 VYASPVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPIL 187 >gi|307944386|ref|ZP_07659727.1| Bacterial export protein, family 1 [Roseibium sp. TrichSKD4] gi|307772732|gb|EFO31952.1| Bacterial export protein, family 1 [Roseibium sp. TrichSKD4] Length = 280 Score = 68.5 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 77/204 (37%), Gaps = 9/204 (4%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLS-MSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64 E++ +L L + R I + P S + +++ +A S + P ++ ++ Sbjct: 18 ELLGATLILSIARTSPLIFVNPIFSRHQFQSGFLQMSIIIAISAPIFPTVFIQLNAYGIP 77 Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124 LV+ E+ +G V +L+ V + G +I A+G + + + + Sbjct: 78 TPFLLVVLVLKEIVIGLVIAILLSVPFWAVDSAGKIIENAVGFSPAS-----EGEISGSI 132 Query: 125 NSLIGIIGLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMI 181 +L + L+ ++ + + KS P + I V +LQ Sbjct: 133 GNLFLTFAFVLLFFTGLYYELILDPIYKSIIVWPPFAAFPSSSDTILLDLVEVLQQISES 192 Query: 182 MLRLSSPFLFFYIVFNISIGLLNK 205 ++ P + ++ ++ G + K Sbjct: 193 SFIIALPIVALLLLSDLIAGFVLK 216 >gi|285018285|ref|YP_003375996.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473503|emb|CBA16006.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 256 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 77/224 (34%), Gaps = 4/224 (1%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 ++ RV L+P +S ++ V + F ++ L N + Sbjct: 20 MLYARVAPTFQLIPIISSRFVVNPVTRQIVILFVVIGLESHVPF--RVNGPAGVALAGSC 77 Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133 +VE +G V +++ G +I G + S+ + + + + + ++ Sbjct: 78 VVETIIGIVISVIVASPFWIASVVGELIDNQRGATIADSIDPASGVEASVMAPFLNLMFA 137 Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193 + KS +P+GQ +F + V +L + + +S+P Sbjct: 138 NVFLQKGGLIVLMLFFSKSLSDVPLGQIPHFS--YVGLVTLLGHVLQLAISISAPVAIGL 195 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237 ++ + + L++ Q+ + +S + +V Sbjct: 196 MLLDGVLAFLSRFCKQLNAFSLSLTVKSLAAYGIMYFYFSSVVP 239 >gi|170738292|ref|YP_001779552.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia MC0-3] gi|169820480|gb|ACA95062.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia MC0-3] Length = 269 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 88/228 (38%), Gaps = 5/228 (2%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76 R+ + + P I ++R + +SI + + L ++ + +V+ E Sbjct: 28 VRLLVLMTIFPPTGGELITKRIRNAMVVLWSIYVA---YGQQALMTQLHGGFLLAVVVKE 84 Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136 +G V + + G+ I G N S T ++L+ +A Sbjct: 85 AVIGLVIAFVASPVFWVAEAVGTYIDDLTGYNNVQITNPSLGQQTTLTSTLLMQCATVAF 144 Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLSSPFLFFYI 194 W + + A+ ++Y P+G F + + + + + +L+ P + + Sbjct: 145 WTLGGMTFLLGAVFQTYVWWPLGSLTPVPRAFIEAFVMQQTDSLMVTIAKLAGPAVLLLL 204 Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 + ++ +GLL+++ ++ + ++ P L L L L I + + Q Sbjct: 205 LVDVGVGLLSRIASKLDLVSLAQPVKGALAVLLLALMIGMFIGQVKDQ 252 >gi|330894460|gb|EGH27121.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. mori str. 301020] Length = 264 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R ++V P + + + N Sbjct: 11 FMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVVAMVPAPAISRALGSLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T ML Sbjct: 130 FQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|331669595|ref|ZP_08370441.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli TA271] gi|331063263|gb|EGI35176.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli TA271] Length = 188 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 2/163 (1%) Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 +N + E+ +G L+ GS I G L +++ + + + Sbjct: 17 LNEIDIALFAAREIIIGLFIACLLASPFWMFLAIGSFIDNQRGATLSSTLDPATGVDTSE 76 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183 L L + + + L +SY P G + + + Sbjct: 77 LARLFNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTI 134 Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL 226 +SP + + +GLL Q+ + IS L Sbjct: 135 VYASPVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFF 177 >gi|82795280|gb|ABB91649.1| type III secretion protein HrcT [Pseudomonas syringae pv. tagetis] Length = 264 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 89/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L + R+ C++L+P Y+ +R +++ P + + N + Sbjct: 11 FILGMGLAMARLVPCMLLVPAFCFKYLKGPLRYAVVAVVAMIPAPGISRALTSLN-EDWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + G+L+ G+++ + G + + TPL L Sbjct: 70 AIGGLLLKEAVLGTLLGMLLYAPFWMFASVGALLDSQRGALSGGQINPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L N F+ + T M+ Sbjct: 130 FQETLIMLVILTGGLSMITQVIWDSYSVWPPTSWLPGMTANGLDVFLGQINQTLQHMMLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ ++ ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAALAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|322654744|gb|EFY51063.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] Length = 214 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 2/183 (1%) Query: 55 WDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMG 114 ++ LV+ E +G + G L+ + G +I G L +S+ Sbjct: 7 PHALNEAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSID 66 Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM 174 ++ + + + + + + + + L KSY E + Sbjct: 67 PANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTF 124 Query: 175 LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234 + L L+SP + ++ + +GLL++ PQ+ + IS G+ L + L Sbjct: 125 INQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSP 184 Query: 235 IVY 237 ++ Sbjct: 185 VLP 187 >gi|289606786|emb|CBI61015.1| unnamed protein product [Sordaria macrospora] Length = 150 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 61/147 (41%), Gaps = 2/147 (1%) Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62 ++ E + +L + RVG+ ++ P +P+QVR+ + A ++++L I + Sbjct: 6 LAVEPQLWALLFTMVRVGAAFIVAPVFGAVAMPVQVRVLLSGAIAVLVLHAQAFAIPTEV 65 Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 F + S + E +G G ++++ VI ++G+ + + Sbjct: 66 FSLTTFLS--IAAEGLVGLAIGFVLQIAFAAPLIAAEVIGMSMGIGFAAMVDPQNGAQSP 123 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYAL 149 L + + ++ L +D H + + Sbjct: 124 ALGTFLSVLLTLLFLSLDGHLILIDLI 150 >gi|330872920|gb|EGH07069.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963057|gb|EGH63317.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. actinidiae str. M302091] Length = 264 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 90/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ + L + R+ C++L+P Y+ +R +++ P + + N + Sbjct: 11 LILGMGLAMARLVPCMLLVPAFCFKYLKGPLRYAVVAVVAMIPAPGISRALTSLN-DDWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ LG + G+L+ G+++ + G + S TPL L Sbjct: 70 AIGGLLLKEVVLGTLLGMLLYAPFWMFASVGALLDSQRGALSGGQINPSLGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T M+ Sbjct: 130 FQETLVMLVLISGGLSLITQVIWDSYMVWPPTSWLPGMTAEGLDVFLGQLNQTLQHMMLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ ++ ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAALAIIGLYAQQLNVSILAMPAKSMAGIAFLLVYLPTLL 240 >gi|28868601|ref|NP_791220.1| type III secretion protein HrcT [Pseudomonas syringae pv. tomato str. DC3000] gi|213968266|ref|ZP_03396410.1| type III secretion protein HrcT [Pseudomonas syringae pv. tomato T1] gi|301381805|ref|ZP_07230223.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. tomato Max13] gi|302061996|ref|ZP_07253537.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. tomato K40] gi|302135078|ref|ZP_07261068.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. tomato NCPPB 1108] gi|11276518|gb|AAG33886.1| HrcT [Pseudomonas syringae pv. tomato] gi|28851839|gb|AAO54915.1| type III secretion protein HrcT [Pseudomonas syringae pv. tomato str. DC3000] gi|213926904|gb|EEB60455.1| type III secretion protein HrcT [Pseudomonas syringae pv. tomato T1] gi|331015105|gb|EGH95161.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 264 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 90/231 (38%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ + L + R+ C++L+P Y+ +R +++ P + + N + Sbjct: 11 LILGMGLAMARLVPCMLLVPAFCFKYLKGPLRYAVVAVVAMIPAPGISRALTSLN-DDWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ LG + G+L+ G+++ + G + S TPL L Sbjct: 70 AIGGLLLKEVVLGTLLGMLLYAPFWMFASVGALLDSQRGALSGGQINPSLGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + + + + SY P L F+ L T M+ Sbjct: 130 FQETLVMLVLISGGLSLITQVIWDSYMVWPPTSWLPGMTAEGLDVFLGQLNQTLQHMMLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ ++ ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAALAIIGLYAQQLNVSILAMPAKSMAGIAFLLVYLPTLL 240 >gi|300310131|ref|YP_003774223.1| Type III secretion HprX protein [Herbaspirillum seropedicae SmR1] gi|300072916|gb|ADJ62315.1| Type III secretion HprX protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 88/245 (35%), Gaps = 3/245 (1%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 + + + +++++ L+ RV C+++LPG ++ + + AMA S+ Sbjct: 5 LLLDLQAVLVTMALVTPRVLVCLVILPGFGLNVLTGLAKNTAAMAISLP-AALPTFLFVQ 63 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 + + +V E +G + G+L+ + +Q GS+ + + + Sbjct: 64 RTAPDMLTTGVMVFKEAMIGLMFGVLMAIPLWVVQSIGSIFDSQRSPIQIQANNATVDRD 123 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTT 178 + + +L+ +L + + L++SY P F V Sbjct: 124 ASAVGALLLQAVVLVMVQAGMFAGMARILIESYAVWPAFTLAPPFEPGHFDVLVKRFGEL 183 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 ++ +P L ++ ++ + + F S P +G L + L + Sbjct: 184 LWYIVVYGAPVLIPLVLIEFGFAIVGVFASNLQVSFASAPVKSLVGLLIMLLYWSTFSHY 243 Query: 239 FSHSF 243 + F Sbjct: 244 VAGDF 248 >gi|329901845|ref|ZP_08272933.1| Type III secretion inner membrane protein [Oxalobacteraceae bacterium IMCC9480] gi|327548982|gb|EGF33598.1| Type III secretion inner membrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 266 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 89/245 (36%), Gaps = 3/245 (1%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 + I + M+++ L++ R + +LPG + R A+A ++ Sbjct: 5 LLIDLQNTMVAMALVMPRSFVVLAILPGFGTRTLVGIARNSIALAIALP-AWLPTYYFVK 63 Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 V+ L E +G + G+L+ + LQ GS++ T S S Sbjct: 64 TGQVDYMLAVMLGFKEAGIGLMLGVLMALPIWALQSLGSILDTQRASTQVMSDNASFDAD 123 Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTT 178 + L +++ ++ + + +++SYG P + + + Sbjct: 124 ASALGAMLVQAVVMVMIQAGLMTALVRIMIESYGLWPAFSLMPPFELGQMDVVLKRFGEF 183 Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 F + P L ++ + +I ++ + + IS+P LG L + + + Sbjct: 184 FWHLAVYGGPVLIPLVLVDFTIAVIGIFASNLQVSAISSPIKSVLGLFILLVYWPTLAHY 243 Query: 239 FSHSF 243 S+ F Sbjct: 244 ISYDF 248 >gi|256370975|ref|YP_003108799.1| flagellar biosynthesis pathway protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007559|gb|ACU53126.1| putative flagellar biosynthesis pathway protein [Acidimicrobium ferrooxidans DSM 10331] Length = 246 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 72/234 (30%), Gaps = 10/234 (4%) Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 +++ + +++ +++ +P +L A+ + I Sbjct: 8 GSVLAFLIATAHALGFVVIAAPFALATVPRTAQLALAVGMGMA-----GAAIHTALPATT 62 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 + G + G + GS I G S+ Sbjct: 63 PALIGQLAWAAATGALIGFVALAAISIGSQAGSFIGLLGGFVTPPSLTPLAFGEVPVTGD 122 Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186 L G+I + +V V + ++ N + V + TF L ++ Sbjct: 123 LYGMIWAVLFFVSGADVVVLRGF-----YLASDASVHLANTATVIVQSVTLTFAAGLEVA 177 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 +P + I +L K+ PQ+ P I L + + +S+ +I + F Sbjct: 178 APVIAVMFFAQIVAAVLTKVAPQLQPLGFLFPLEILLSLIMMVVSLPVIPHLFD 231 >gi|312958830|ref|ZP_07773349.1| type III secretion system rscT [Pseudomonas fluorescens WH6] gi|311286600|gb|EFQ65162.1| type III secretion system rscT [Pseudomonas fluorescens WH6] Length = 262 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 3/230 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + SL + + R+ C L+ +I R M +++ P + ++ ++ Sbjct: 7 FLPSLVVGMARIYPCAFLVAAFCFQHIRGMPRHTIVMVMALMPAPGIHAALEELDYSALM 66 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 S LV+ E+ LG + G+L+ + + G+++ G + S TP+ L Sbjct: 67 -LSALVLKEIALGLLLGVLLSMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPVGHL 125 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRL 185 + + L V + + SY P N S FV++L TF M+ Sbjct: 126 FKQLAIFLLMVTLGLGALTQVIWDSYRIWPPTAWFPLPAANGMSLFVDLLGDTFTHMMLY 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 ++PF+ ++ I LL Q+ + ++ P G L L ++ Sbjct: 186 AAPFIAVLLLLEFGIALLGVYSQQLQVSTLAPPVKCLAGIGILLLYFALL 235 >gi|28628134|gb|AAO34618.1| HrcT [Erwinia chrysanthemi] Length = 224 Score = 63.1 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 1/156 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + +L L V R+ C+ L+P S S I +R A+A ++V + + L + Sbjct: 13 FIYALTLGVARLYPCLFLVPLFSFSIIKGMLRNAVAIAIALVPAGAIQQQM-LTTTITWP 71 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ EL +G + G+++ + + G++ G + + TPL + Sbjct: 72 MLPALLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDATPLGHM 131 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN 163 + + ++ L + L SY P L Sbjct: 132 LKELFIMLLVLTIGFSGFTQLLWDSYRLWPALDFLP 167 >gi|229588263|ref|YP_002870382.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360129|emb|CAY46986.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 262 Score = 63.1 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 3/229 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SL + + R+ C +L+ +I R M +++ P ++ + Q++ Sbjct: 8 LPSLVIGMARIYPCGILVAAFCFQHIRGMPRHTLVMVLALMPAPGIYAALAGQDYSA-IL 66 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E+ LG + G+L+ + + G+++ G + S TP+ L Sbjct: 67 LGALVLKEVALGVLLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGHLF 126 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRLS 186 + + L V + + SY P N S F+++L TF ML + Sbjct: 127 KQLAIFLLMVSLGLGTLTQVIWDSYLIWPPTAWFPLPAANGMSVFIDLLGDTFTHMLLYA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 +PF+ ++ I LL Q+ + ++ P G L L ++ Sbjct: 187 APFIAVLLLLEFGIALLGVYSQQLQVSTLAPPVKSLAGIGILLLYFALL 235 >gi|213863367|ref|ZP_03386622.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 79 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 G ++ ++ G +I +GL+ T + + L L ++ ++ LL + H Sbjct: 7 GFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHL 66 Query: 144 QVFYALVKSYGTI 156 + LV ++ T+ Sbjct: 67 WLISLLVDTFHTL 79 >gi|15594618|ref|NP_212407.1| flagellar biosynthesis protein (fliR) [Borrelia burgdorferi B31] gi|3913681|sp|Q44907|FLIR_BORBU RecName: Full=Flagellar biosynthetic protein fliR gi|1165258|gb|AAA85597.1| FliR [Borrelia burgdorferi] gi|1185061|gb|AAB58970.1| flagellar export protein [Borrelia burgdorferi] gi|2688193|gb|AAC66675.1| flagellar biosynthesis protein (fliR) [Borrelia burgdorferi B31] Length = 269 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 18 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 73 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G S IGL + ++ + Sbjct: 74 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 133 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + + F Sbjct: 134 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLV------NMRNSGFVKLLLMSFGFLFE 187 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 188 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 243 >gi|116514993|ref|YP_802622.1| hypothetical protein BCc_050 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256847|gb|ABJ90529.1| type III protein export, membrane component [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 266 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 3/217 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 + I+ RV S + L I ++ S +L+PF+ +N + Sbjct: 17 IIFIMARVFSLLFYLKIFQNIKINYFTKIIIIYLLSSLLIPFISVY---KNNFCTIDFFL 73 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 + + ++F+G V G LI+ GL F G + S IGL+ + ++L I Sbjct: 74 IFLNQIFIGIVLGFLIKNVLFGLFFIGEIFSLQIGLSSLNFFYFDKNTYSLIFSNLFSIF 133 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191 L ++ + H ++ L+ S+ P+ + + IF VN L F + P LF Sbjct: 134 FLFTFFICNMHLKLLVLLIHSFEIYPLNNFIFYKKIFFYIVNFLNIIFFQSVSFILPILF 193 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228 F+++ I+ +NKL+P++ + + G L Sbjct: 194 FFLILYITYIFINKLIPKVSFFSSFMIIVFFFGMFIL 230 >gi|330902018|gb|EGH33339.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. japonica str. M301072PT] Length = 196 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 2/169 (1%) Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 4 GGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGELFQ 63 Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRLSS 187 ++ + + + + SY P + N F+ L T ML ++ Sbjct: 64 ETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWMPGMNAGGLDVFLEQLNQTMQHMLLYAA 123 Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 PF+ ++ + ++ Q+ + ++ P G FL + + ++ Sbjct: 124 PFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 172 >gi|223888958|ref|ZP_03623549.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 64b] gi|223885774|gb|EEF56873.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 64b] Length = 262 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G S IGL + ++ + Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHL------ANMRNSEFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKASPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|225552126|ref|ZP_03773066.1| flagellar biosynthetic protein FliR [Borrelia sp. SV1] gi|225371124|gb|EEH00554.1| flagellar biosynthetic protein FliR [Borrelia sp. SV1] Length = 262 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G S IGL + ++ + Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLV------NMRNSEFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|216264829|ref|ZP_03436821.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 156a] gi|225549087|ref|ZP_03770062.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 94a] gi|215981302|gb|EEC22109.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 156a] gi|225370313|gb|EEG99751.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 94a] Length = 262 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G S IGL + ++ + Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHL------ANMRNSEFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|221217760|ref|ZP_03589228.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 72a] gi|224533204|ref|ZP_03673804.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi WI91-23] gi|225550158|ref|ZP_03771118.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 118a] gi|221192437|gb|EEE18656.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 72a] gi|224511931|gb|EEF82332.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi WI91-23] gi|225369270|gb|EEG98723.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 118a] Length = 262 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G S IGL + ++ + Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLV------NMRNSEFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|224533795|ref|ZP_03674383.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi CA-11.2a] gi|224513088|gb|EEF83451.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi CA-11.2a] Length = 262 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G + IGL + ++ + Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFANQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLV------NMRNSEFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|312148381|gb|ADQ31040.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi JD1] Length = 262 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 85/236 (36%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G S IGL + ++ + Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL ++I H V V+ + + + F Sbjct: 127 YLFLLLFLSSDFLLRFFLIGIHDSVLNIRVEHL------ANMRNSEFVNLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|195941373|ref|ZP_03086755.1| flagellar biosynthesis protein (fliR) [Borrelia burgdorferi 80a] Length = 262 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G S IGL + ++ + Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +V+ H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVVGIHDSVLNIRVEHLV------NMRNSEFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|224531723|ref|ZP_03672355.1| flagellar biosynthetic protein FliR [Borrelia valaisiana VS116] gi|224511188|gb|EEF81594.1| flagellar biosynthetic protein FliR [Borrelia valaisiana VS116] Length = 262 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + T L N + + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIIVEKIKVTYPLDNMFS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 +++ E LG + + + G S IGL I ++ + Sbjct: 67 VLILLGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANVFDIFSEEDSMVISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + F Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLV------NMRNSEFIKLLFMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKASPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|218249562|ref|YP_002374796.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi ZS7] gi|226321591|ref|ZP_03797117.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi Bol26] gi|218164750|gb|ACK74811.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi ZS7] gi|226232780|gb|EEH31533.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi Bol26] gi|312149312|gb|ADQ29383.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi N40] Length = 262 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 + +++ E LG + + + G S IGL + ++ + Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLV------NMRNSGFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|187919908|ref|YP_001888939.1| type III secretion system inner membrane R protein [Burkholderia phytofirmans PsJN] gi|187718346|gb|ACD19569.1| type III secretion system inner membrane R protein [Burkholderia phytofirmans PsJN] Length = 241 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 84/226 (37%), Gaps = 12/226 (5%) Query: 23 IMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCV 82 + L+P + + +RL + F+ + Q A VE+ +G + Sbjct: 22 LSLVPFGGSESLGVTLRLPLMLMFATL----------PQQIGWPADPIVAASVEVLVGLL 71 Query: 83 HGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFH 142 GLL+ V G++I G ++ +S + L + L + Sbjct: 72 LGLLLSVAFHAAGAAGALIDQQGGYSIGSSYDPNFRDESALFERLFIWLATLTFFTGKGL 131 Query: 143 HQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISI 200 V+ ++ P G + + L + + R++ P + ++ +IS+ Sbjct: 132 QAVYGFFADAWVLWPPGAPRPDHMRVMRELAEQRLPLSMVEGARIAMPLIGMMLLVDISM 191 Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 GL+++ ++ + + + SL + + +++ + + FL G Sbjct: 192 GLMSRYAKRLNPFTTARTVKAIVLSLVIVACVPVLIERLNALFLQG 237 >gi|13363195|dbj|BAB37146.1| type III secretion protein EpaR1 [Escherichia coli O157:H7 str. Sakai] Length = 155 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 3/142 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L + + +N Sbjct: 17 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCAL---VQHYHYELSTLNEI 73 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L E+ +G L+ GS I G L +++ + + + L L Sbjct: 74 DIALLAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 133 Query: 128 IGIIGLLALWVIDFHHQVFYAL 149 + + + L Sbjct: 134 FNLFSAAVYLTNGGLNFILETL 155 >gi|15042144|gb|AAK81925.1|AF292566_9 RscT [Pseudomonas fluorescens] Length = 262 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 3/229 (1%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SL + + R+ C +L+ +I R M +++ P ++ + Q++ Sbjct: 8 LPSLVIGMARIYPCGILVAAFCFQHIRGMPRHTLVMVLALMPAPGIYAALAGQDYSA-IL 66 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E+ LG + G+L+ + + G+++ G + S TP+ L Sbjct: 67 LGALVLKEVALGVLLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGHLF 126 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRLS 186 + + L V + + SY P N S F+++L TF ML + Sbjct: 127 KQLAIFLLMVSLGLGTLTQVIWDSYLIWPPTAWFPLPAANGMSVFIDLLGDTFTHMLLYA 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235 +PF+ ++ I L Q+ + ++ P G L L ++ Sbjct: 187 APFIAVLLLLEFGIAQLGVYSLQLQVSTLAPPVKSLAGIGILLLYFALL 235 >gi|318607484|emb|CBY28982.1| type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] Length = 131 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFY 193 + + V AL SY +P G + + F+ Q + + L + P + Sbjct: 1 MFLISGGFNLVLTALYSSYEILPAGSGIQPTSAILQFLQSEWQLMYELCLSFALPAMLVM 60 Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239 ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ + Sbjct: 61 VLADLSLGLINRSSQQLNVFFLAMPIKSALALLLLLISLPYALHHY 106 >gi|15803387|ref|NP_289420.1| type III secretion apparatus protein [Escherichia coli O157:H7 EDL933] gi|12517365|gb|AAG57979.1|AE005515_1 type III secretion apparatus protein [Escherichia coli O157:H7 str. EDL933] Length = 150 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 3/142 (2%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 ++ + L CR+ LLP + IP VR + S L + + +N Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCAL---VQHYHYELSTLNEI 68 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L E+ +G L+ GS I G L +++ + + + L L Sbjct: 69 DIALLAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128 Query: 128 IGIIGLLALWVIDFHHQVFYAL 149 + + + L Sbjct: 129 FNLFSAAVYLTNGGLNFILETL 150 >gi|237799999|ref|ZP_04588460.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022854|gb|EGI02911.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv. oryzae str. 1_6] Length = 264 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 91/231 (39%), Gaps = 3/231 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++ + L + R+ C++L+P Y+ VR ++V P + + N + Sbjct: 11 LILGMALAMARLVPCMLLVPAFCFKYLKGPVRYAVVAVVAMVPAPGISRALTSLN-EDWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ LG + G+L+ G+++ + G + + TPL L Sbjct: 70 AIGGLLLKEVVLGTLLGMLLYAPFWMFASVGALLDSQRGALSGGQINPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185 ++ + V + + SY P L + F+ L T M+ Sbjct: 130 FQETLIMLVIVTGGLSTITQVIWDSYSVWPPTSWLPGMTADGLDIFLGQLNQTLQHMMLY 189 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++PF+ ++ ++ ++ Q+ + ++ P G FL + + ++ Sbjct: 190 AAPFIALLLLIEAALAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLL 240 >gi|224534308|ref|ZP_03674886.1| flagellar biosynthetic protein FliR [Borrelia spielmanii A14S] gi|224514410|gb|EEF84726.1| flagellar biosynthetic protein FliR [Borrelia spielmanii A14S] Length = 266 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N ++ + Sbjct: 15 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIIVEKIKIIYPLDNMLS---F 70 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 +++ E LG + + + G S IGL + ++ + Sbjct: 71 VLILLGEAILGLIQAFFVTIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 130 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +VI H V V+ + + F Sbjct: 131 YLFLLLFLSSDFLLRFFVIGIHDSVLKIRVEHLV------NMRNTEFIKLLLMSFGFLFE 184 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 185 KALLISFPVLALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 240 >gi|203284194|ref|YP_002221934.1| flagellar biosynthesis protein [Borrelia duttonii Ly] gi|201083637|gb|ACH93228.1| flagellar biosynthesis protein [Borrelia duttonii Ly] Length = 262 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 7/225 (3%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 I R+ + P S + + F++ SI+++ + L N + +++ Sbjct: 16 IFIRIFIFLRFSPFFSTIKM-GYLNFFFSLILSIIVVDKVNVVYPLNNLTA---FVLILL 71 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E LG + + + G S +GL + ++ + + L+ Sbjct: 72 GEAILGLIQAFFVSIIFNVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFTYLFLI 131 Query: 135 ALWVIDFHHQVF-YALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSPFLF 191 DF + + S + + +N N F L +S P L Sbjct: 132 VFLSNDFLFRFLVIGVYDSVLNVRVENMVNIKNYEFIKLVFYSFAILFEKSLIMSLPILG 191 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++ + +G+++K PQI + IS +GLG + L ++ V Sbjct: 192 VLLLLYLILGIISKTSPQINLLMISFAISLGLGLIVLYITFPSFV 236 >gi|119391680|emb|CAJ46465.1| RhcT protein [Bradyrhizobium japonicum] gi|119391684|emb|CAJ46468.1| RhcT protein [Bradyrhizobium liaoningense] gi|145207710|emb|CAJ90701.1| RhcT protein [Bradyrhizobium japonicum] gi|145207714|emb|CAJ90704.1| RhcT protein [Bradyrhizobium japonicum] gi|145207718|emb|CAJ90707.1| RhcT protein [Bradyrhizobium japonicum] Length = 165 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 2/138 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSI-VLLPFLWDTIDLQNFVNRAYYSKLVMV 75 R +++LP + I +R +A + L L + L + Sbjct: 28 ARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLAQIKLGLQALDPNTRLVSVTMLGVK 87 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM-GISDSLAETPLNSLIGIIGLL 134 E+F+G + G+L+ + +Q G +I T G++ Q + + T +G+ + Sbjct: 88 EVFVGLMLGILLSIPLWSIQAVGDIIDTQRGISSQVAGEDPATHSQATGTGLFLGVTAVT 147 Query: 135 ALWVIDFHHQVFYALVKS 152 ++ + L S Sbjct: 148 IFVLVGGLQTMVSGLYGS 165 >gi|149926084|ref|ZP_01914347.1| flagellar biosynthesis protein P [Limnobacter sp. MED105] gi|149825372|gb|EDM84583.1| flagellar biosynthesis protein P [Limnobacter sp. MED105] Length = 266 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 82/228 (35%), Gaps = 3/228 (1%) Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77 R S ++ P LS +++ ++ F T+ + A+ + E+ Sbjct: 25 RTVSFMVFFPLLSKGLSSSLIKMSVGSVL-VLYPAFASTTLYFSSMNPPAFTLITFLSEV 83 Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137 LG + GL I + G+++ G SDS E P+ L G++ ++ Sbjct: 84 VLGALLGLTIAFPYYAFKAFGALVDVYRGATFAAQATGSDSGEELPIEQLFGLLFAALIF 143 Query: 138 VIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195 H V L+ SY +P G L+ + ++ + M + LS P L + Sbjct: 144 AGPGLHAVSVHLLNSYLVMPPGTLTLLSLDSWLTTMLRMAADHITFSVLLSGPVLIAILA 203 Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 + + +++ Q+ +Y + G L + + F Sbjct: 204 VELVVEIISAFTQQLQVYSLEFGLRSVFGIAALITLMFFAEQEILTMF 251 >gi|51598533|ref|YP_072721.1| flagellar biosynthesis protein [Borrelia garinii PBi] gi|51573104|gb|AAU07129.1| flagellar biosynthesis protein [Borrelia garinii PBi] Length = 262 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 7/230 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ I+ R+ + P S I F++ S++++ + L + ++ + Sbjct: 11 FTILPILVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIRIIYPLDSMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI- 128 ++ E LG + + + G S IGL + ++ + Sbjct: 67 MLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRLS 186 + LL L + S I + +N N+ + F L +S Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMRNLEFIKLLLMSFGFLFEKALLIS 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 187 FPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|218670290|ref|ZP_03519961.1| flagellar biosynthesis protein FliR [Rhizobium etli GR56] Length = 62 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 40/62 (64%) Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60 M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI +LP LWDT+ Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVLPLLWDTVYP 60 Query: 61 QN 62 Sbjct: 61 AV 62 >gi|219684667|ref|ZP_03539610.1| flagellar biosynthetic protein FliR [Borrelia garinii PBr] gi|219672029|gb|EED29083.1| flagellar biosynthetic protein FliR [Borrelia garinii PBr] Length = 262 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 7/230 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ I+ R+ + P S I + F++ S++++ + L + ++ + Sbjct: 11 FTILPILVRIFMFLKFSPFFSTIKI-GYLNFFFSLILSVIIVEKIRIIYPLDSMLS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI- 128 ++ E LG + + + G S IGL + ++ + Sbjct: 67 MLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRLS 186 + LL L + S I + +N N+ + F L +S Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMRNLEFIKLLLMSFGFLFEKALLIS 186 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 187 FPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|145207706|emb|CAJ90698.1| RhcT protein [Bradyrhizobium sp. MSDJ 5327] Length = 165 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 2/138 (1%) Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSI-VLLPFLWDTIDLQNFVNRAYYSKLVMV 75 R +++LP + I +R +A + L L + L + Sbjct: 28 ARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLAQIKLGLQALDPNTRLVSVTMLGVK 87 Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM-GISDSLAETPLNSLIGIIGLL 134 E+F+G + G+L+ + +Q G +I T G++ Q + + T +G+ + Sbjct: 88 EVFVGLMLGILLSIPLWSIQAVGDIIDTQRGISSQVAGEDPATHSQATGTGLFLGVTAVT 147 Query: 135 ALWVIDFHHQVFYALVKS 152 ++ + L S Sbjct: 148 IFVLVGGLQTMVGGLYGS 165 >gi|203287733|ref|YP_002222748.1| flagellar biosynthesis protein [Borrelia recurrentis A1] gi|201084953|gb|ACH94527.1| flagellar biosynthesis protein [Borrelia recurrentis A1] Length = 262 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 7/225 (3%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 I R+ + P S + + F++ SI+++ + L N + +++ Sbjct: 16 IFIRIFIFLRFSPFFSTIKM-GYLNFFFSLILSIIVVDKVNVVYPLNNLTA---FVLILL 71 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E LG + + + G S +GL + ++ + + L+ Sbjct: 72 GEAILGLIQAFFVSIIFNVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFTYLFLI 131 Query: 135 ALWVIDFHHQVF-YALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSPFLF 191 + DF + + S + + +N N F L +S L Sbjct: 132 VFLLNDFLFRFLVIGVYDSVLNVRVENMVNIKNYEFIKLVFYSFAILFEKSLIMSLSILG 191 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 ++ + +G+++K PQI + IS +GLG + L ++ V Sbjct: 192 VLLLLYLILGIISKTSPQINLLMISFAISLGLGLIVLYITFPSFV 236 >gi|216263839|ref|ZP_03435833.1| flagellar biosynthetic protein FliR [Borrelia afzelii ACA-1] gi|215979883|gb|EEC20705.1| flagellar biosynthetic protein FliR [Borrelia afzelii ACA-1] Length = 262 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N + + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIIVEKIKIIYPLDNMFS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E LG + + + G S IGL + ++ + Sbjct: 67 VLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +V+ H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVVGIHDSVLNIRVEHLV------NMRNSEFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|111115098|ref|YP_709716.1| flagellar biosynthesis protein [Borrelia afzelii PKo] gi|110890372|gb|ABH01540.1| flagellar biosynthesis protein [Borrelia afzelii PKo] Length = 262 Score = 57.0 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 19/236 (8%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ ++ R+ + P S I F++ S++++ + L N + + Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIIVEKIKIIYPLDNMFS---F 66 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 ++ E LG + + + G S IGL + ++ + Sbjct: 67 VLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126 Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180 + LL +V+ H V V+ + + F Sbjct: 127 YLFLLLFLSSDFLLRFFVVGIHDSVLNIRVEHLV------NMRNSEFVKLLLMSFGFLFE 180 Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 181 KALLISFPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236 >gi|219685752|ref|ZP_03540563.1| flagellar biosynthetic protein FliR [Borrelia garinii Far04] gi|219672691|gb|EED29719.1| flagellar biosynthetic protein FliR [Borrelia garinii Far04] Length = 269 Score = 56.2 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 7/230 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 ++ I+ R+ + P S I F++ S++++ + L + ++ + Sbjct: 18 FTILPILVRIFMFLKFSPFFSAIKI-GYFNFFFSLILSVIIVEKIKIIYPLDSMLS---F 73 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI- 128 ++ E LG + + + G S IGL + ++ + Sbjct: 74 MLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 133 Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRLS 186 + LL L + S I + +N N+ + F L +S Sbjct: 134 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMRNLEFIKLLLMSFGFLFEKALLIS 193 Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 194 FPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 243 >gi|47570847|ref|ZP_00241386.1| flagellar biosynthetic protein fliR, putative [Bacillus cereus G9241] gi|47552486|gb|EAL10998.1| flagellar biosynthetic protein fliR, putative [Bacillus cereus G9241] Length = 106 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 4/104 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69 + F CR+ S + LP S IP ++ F +A SI + D +D+ + Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTTWDV 62 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM 113 + ++ +G ++ + + G ++ IGL+ + Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQAKFV 106 >gi|119953072|ref|YP_945281.1| flagellar biosynthetic protein FliR [Borrelia turicatae 91E135] gi|119861843|gb|AAX17611.1| flagellar biosynthetic protein FliR [Borrelia turicatae 91E135] Length = 262 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 82/236 (34%), Gaps = 7/236 (2%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + R+ + P + + + FA+ SI+++ + L N + ++ ++ Sbjct: 16 VFVRIFLFLRFSPFFATIRM-SYLNFFFALILSIIVVDKINVVYPLDNLIA---FTLILA 71 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E LG + + + G S +GL + ++ + + LL Sbjct: 72 GEAILGLIQAFFVSIIFSVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFTCLFLL 131 Query: 135 ALWVIDFHHQVFY-ALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLSSPFLF 191 + + F + S + + +N N F L +S P L Sbjct: 132 LFLSNNVLLRFFMIGVHDSVLNVRVENMVNIKNYEFIELMFYSFVILFEKALIISLPILG 191 Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 ++ + +G+L+K PQI + IS +GLG + L + +V Sbjct: 192 VLLLLYLILGILSKTAPQINLLMISFAVSLGLGLIILYIGFPSLVMSVKRVIELAL 247 >gi|320103853|ref|YP_004179444.1| flagellar biosynthetic protein FliR [Isosphaera pallida ATCC 43644] gi|319751135|gb|ADV62895.1| flagellar biosynthetic protein FliR [Isosphaera pallida ATCC 43644] Length = 267 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 66/195 (33%), Gaps = 8/195 (4%) Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120 ++ V ++ L+ +EL G V GL + G +++ GL+ + + Sbjct: 71 ESSVALEHWGVLLPLELVYGGVLGLGTGWVVAAARRAGDLLAVQAGLSPDVWLAPNGDDP 130 Query: 121 -ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-------NFGNIFSSFV 172 +PL L G + +D + AL + P G ++ + + Sbjct: 131 DASPLGRLHGWTAVAIFITLDGPLALTRALWRGLRQHPPGTWWNAPLSTEPLADLLAVLL 190 Query: 173 NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 N + + L L++ IV + + + +P + + P L L+ Sbjct: 191 NQICHALTLCLELAAIPAAALIVAAVGLAWTARALPHVGALAATMPLRFAAVVAALLLTG 250 Query: 233 EIIVYQFSHSFLYGF 247 E +F G Sbjct: 251 EQFASSILAAFRAGL 265 >gi|187918147|ref|YP_001883710.1| flagellar biosynthetic protein FliR [Borrelia hermsii DAH] gi|119860995|gb|AAX16790.1| flagellar biosynthetic protein FliR [Borrelia hermsii DAH] Length = 262 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 19/242 (7%) Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74 + R+ + P + + + FA SI+++ + L N + ++ ++ Sbjct: 16 VFVRIFLFLRFSPFFATIKM-GYLNFFFAFILSIIVVDKINVVYPLDNLIA---FALILA 71 Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134 E LG + + + G S +GL + ++ + + LL Sbjct: 72 GEAVLGLIQAFFVSIIFSVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFTYLFLL 131 Query: 135 A---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 ++I H V V++ + F L + Sbjct: 132 LFLSNNFLLRFFMIGVHDSVLNVRVEN------MVNIRNYEFIKLIFYSFAVLFEKALVM 185 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245 S P L ++ + +G+L+K PQI + IS +GLG + L + +V Sbjct: 186 SLPILGVLLLLYLILGILSKTSPQINLLMISFAVSLGLGLIVLYICFPSLVMSIKRVIEL 245 Query: 246 GF 247 Sbjct: 246 AL 247 >gi|226320573|ref|ZP_03796133.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 29805] gi|226233992|gb|EEH32713.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 29805] Length = 200 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 15/180 (8%) Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 ++ +++ E LG + + + G S IGL + ++ Sbjct: 1 MLSFALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIIS 60 Query: 126 SLIGIIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQ 176 + + LL +VI H V V+ + + Sbjct: 61 QIFAYLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLV------NMRNSEFVKLLLMSFG 114 Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 F L +S P L ++F + +G+L+K PQI + IS + LG L L + + Sbjct: 115 FLFEKALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 174 >gi|323935779|gb|EGB32082.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli E1520] Length = 142 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 2/124 (1%) Query: 113 MGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV 172 M + + + L L + + + L +SY P G Sbjct: 1 MDPATGVDTSELARLFNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLF 58 Query: 173 NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232 + + + +SP + + +GLL + Q+ + IS L L L + Sbjct: 59 SYINNIMTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYF 118 Query: 233 EIIV 236 I+ Sbjct: 119 GPIL 122 >gi|167948775|ref|ZP_02535849.1| flagellar biosynthesis protein FliR [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 87 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 + + + + R+G+ +M P S +P++ RL A+ + + P L + Sbjct: 9 DAWIGAWLWPLLRIGAMLMAAPVFSSRQVPVRFRLALAVFITWAVAPNLPPMPSIDVIGY 68 Query: 66 RAYYSKLVMVELFLGCVHGLL 86 + +++ ++ +G V G L Sbjct: 69 PGF--IIMLQQILIGVVMGFL 87 >gi|266618907|ref|ZP_06111845.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf] gi|263528671|gb|EEZ28380.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf] Length = 413 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 +GL+ + VPQ+ I + P I +G ++ + + + +F Sbjct: 1 MGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 44 >gi|255018673|ref|ZP_05290799.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL F2-515] Length = 141 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 44/141 (31%) Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL 107 + + + +D+ V E+ G L+ + + + G +I +G Sbjct: 1 MAISIPVATWVDVSGITTLPDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGF 60 Query: 108 NLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167 + + S + +++ ++ + + Y L+KS+ L Sbjct: 61 SQVNLIDPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGF 120 Query: 168 FSSFVNMLQTTFMIMLRLSSP 188 + L + ++ P Sbjct: 121 IDLLLGTLGFALASAVSIALP 141 >gi|213023960|ref|ZP_03338407.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 111 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 31/94 (32%) Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140 + G V + G ++ T G + T + + L + ++ Sbjct: 3 FLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISG 62 Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM 174 + L +SY +P G+ L F F ++ Sbjct: 63 GMEFILNILYESYQYLPPGRTLLFDRQFLKYIQA 96 >gi|153003615|ref|YP_001377940.1| type III secretion system inner membrane R protein [Anaeromyxobacter sp. Fw109-5] gi|152027188|gb|ABS24956.1| type III secretion system inner membrane R protein [Anaeromyxobacter sp. Fw109-5] Length = 258 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 4/187 (2%) Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83 M P L +P VR+ A + A ++ + + G V Sbjct: 28 MASPFLGGPLVPPIVRVALAAGLGAAVSAASAPPPVADGLALAAAGARELAL----GAVL 83 Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143 L+ V + G + T G L E+ L+ ++ Sbjct: 84 AFLVSVPVEAARAAGRLADTFRGATLSELHVAPIRQRESAAGDLLAHWVVVLASWAGGDR 143 Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203 V L+ ++ +P G G + + + +++P + +++I L+ Sbjct: 144 LVVQGLLSTFAAVPPGARAALGGALPAVLAAAGELVAAAVAIAAPAAAGVLAVDLAIALV 203 Query: 204 NKLVPQI 210 ++ PQ+ Sbjct: 204 ARVAPQL 210 >gi|167949068|ref|ZP_02536142.1| flagellar biosynthetic protein FliR [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 64 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + NI +G++ + PQ+ I+ + P I G + +++ ++ FS+ GF Sbjct: 1 MVNIGMGVVMRAAPQLNIFSVGFPITILFGFALVWVTLPNVLTVFSNILEEGF 53 >gi|51587300|emb|CAE53680.1| putative HrcT [Pseudomonas fluorescens bv. V] Length = 143 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SL + + R+ +L+P +I ++R M +++ P + + Q++ + Sbjct: 3 SLVVAMARIYPVAILVPAFCFQHIKGRLRNVIVMVMALIPTPGIHAAMSGQDY-SVLMLI 61 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIG 106 LV+ E+ LG + G L+ + + G+++ G Sbjct: 62 GLVLKEVALGFLLGTLLAMPFWMFESVGALLDNQRG 97 >gi|51587264|emb|CAE53653.1| putative HrcT [Pseudomonas blatchfordae] Length = 148 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SL + + R+ C L+ +I R M +++ P + ++ Q Sbjct: 7 LPSLLVAMARIYPCAFLVAAFCFQHIRGMPRHTIVMVLALLPAPAVHAALEGQELSALII 66 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ EL LG + G+L+ + + G+++ G + S TP+ L Sbjct: 67 -GGLVLKELALGILMGVLLSMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPVGHLF 125 Query: 129 GIIGLLALWVIDF 141 + + L Sbjct: 126 KQLAIFLLMASLG 138 >gi|318607485|emb|CBY28983.1| type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] Length = 128 Score = 43.9 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 2/123 (1%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66 + +L L + R +++LP + + +R A ++ + P + T L + Sbjct: 7 WLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNSVVFAIALPVTPIFFTTSLLYHDSLT 66 Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126 ++ L + EL +G + G + + + G +I T G + T S + + Sbjct: 67 GWFWVLCI-ELMVGVLIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGV 125 Query: 127 LIG 129 L Sbjct: 126 LFT 128 >gi|149922181|ref|ZP_01910619.1| hypothetical protein PPSIR1_23774 [Plesiocystis pacifica SIR-1] gi|149816921|gb|EDM76406.1| hypothetical protein PPSIR1_23774 [Plesiocystis pacifica SIR-1] Length = 250 Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 14/176 (7%) Query: 40 LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGS 99 A+ S+ LP L I L+ + A + + VEL +G V G V + L Sbjct: 37 AILAVGLSLAWLPALGLGIALERPPDAASMAVAIGVELLIGAVMGAGASVLSGALVGASQ 96 Query: 100 VISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG 159 +G + L + L H A+ +P+G Sbjct: 97 SCEARLGAGPVGLEPGTGGSLSALLIAASLAASLSLG----LHLPALVAMRGLLTRVPLG 152 Query: 160 QEL-------NFGNIFSSFVNMLQTTF---MIMLRLSSPFLFFYIVFNISIGLLNK 205 + + + F ++ L L++P L V ++ +G+L + Sbjct: 153 AGARLLDGAGASLDALAIATELGGVAFEACVLGLALATPVLLTRAVVDLGVGVLGR 208 >gi|51587292|emb|CAE53674.1| putative HrcT [Pseudomonas fluorescens] Length = 147 Score = 42.7 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 1/133 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + S+ + + R+ C +L+P +I +R M +++ P + + + + Sbjct: 7 LSSVLVGMARIYPCAILVPAFLFQHIRGMLRHVVVMVMALIPAPGIHAVLAAEEYSALMI 66 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 S LV E LG G+L+ + + G+++ G + S TP+ L Sbjct: 67 -SGLVFKEAALGIFLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGHLF 125 Query: 129 GIIGLLALWVIDF 141 + + L + Sbjct: 126 KQLVIYLLIAVLG 138 >gi|51587260|emb|CAE53650.1| putative HrcT [Pseudomonas gingeri] Length = 178 Score = 42.7 bits (100), Expect = 0.052, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 1/134 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M+ + L + R+ C++L+P ++ +R A +++ P + + L+N Sbjct: 36 LMLGMGLAMARILPCLILVPAFCFKHLKGPLRYGVTCALALIPAPSIGRALALEN-DAWF 94 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + L++ E LG + GLL+ G+++ + G + S TPL L Sbjct: 95 TIAGLLLKESVLGILLGLLLYAPFWMFATVGALLDSQRGALSGGQLNPSLGPDATPLGEL 154 Query: 128 IGIIGLLALWVIDF 141 ++ + + Sbjct: 155 FQEALIMLVILSGG 168 >gi|51587256|emb|CAE53647.1| putative HrcT [Pseudomonas salomonii] Length = 152 Score = 42.3 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 1/133 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SL + + R+ C L+ +I R A +++ P + T Q F + Sbjct: 10 LPSLLIGMARIYPCAFLVAAFCFQHIRGMPRHTIVAALALLPAPGIHATFADQEF-STLM 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 S LV+ E LG + G+L+ + + G+++ G + S TP+ L Sbjct: 69 LSALVLKEAALGTLLGVLLSMPFWLFEAVGALLDNQRGALAGGQLNPSLGPDATPIGHLF 128 Query: 129 GIIGLLALWVIDF 141 + + L Sbjct: 129 KELTIFLLMATLG 141 >gi|320189197|gb|EFW63856.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. EC1212] gi|326339062|gb|EGD62877.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia coli O157:H7 str. 1044] Length = 102 Score = 42.3 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 29/97 (29%) Query: 53 FLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS 112 + + +N + L E+ +G L+ GS I G L ++ Sbjct: 6 LVQHYHYELSTLNEIDIALLAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSST 65 Query: 113 MGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYAL 149 + + + + L L + + + L Sbjct: 66 LDPATGVDTSELARLFNLFSAAVYLTNGGLNFILETL 102 >gi|51587280|emb|CAE53665.1| putative HrcT [Pseudomonas fluorescens bv. V] Length = 151 Score = 42.3 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 1/133 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SL + + R+ C +L+ +I R M ++V P + + Q++ Sbjct: 10 LPSLLIGMARIYPCGILVAAFCFQHIRGMPRHTIVMVMALVPAPAIHAALAGQDYSA-ML 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E LG + G+L+ + + G+++ G + S TP+ L Sbjct: 69 LGALVLKEAALGILLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGHLF 128 Query: 129 GIIGLLALWVIDF 141 + + L V Sbjct: 129 KQLAIFLLMVSLG 141 >gi|51587316|emb|CAE53692.1| putative HrcT [Pseudomonas fluorescens bv. V] Length = 151 Score = 42.0 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 1/133 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SL + + R+ C L+ +I R M ++V P + + Q++ Sbjct: 10 LPSLLIGMARIYPCGTLVAAFCFQHIRGMPRHTIVMVMALVPAPAIHAALAGQDYSA-ML 68 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E LG + G+L+ + + G+++ G + S TP+ L Sbjct: 69 LGALVLKEAALGILLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGHLF 128 Query: 129 GIIGLLALWVIDF 141 + + L V Sbjct: 129 KQLAIFLLMVSLG 141 >gi|218512616|ref|ZP_03509456.1| type III secretion system translocation protein [Rhizobium etli 8C-3] Length = 136 Score = 42.0 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 +++ P S+ I +R A+ S + F + + + + + + L M EL Sbjct: 27 LGILLIFPIFSLFSIVGILRFGLAIGLSAPSVAFAYSVLAIGD-TSWFDLAALSMKELCF 85 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 G + G+ + + Q G + G N ++L PL SL+ Sbjct: 86 GALIGMGLGIPFWAAQAAGDMTDVYRGANAANLFDQINALETAPLGSLMM 135 >gi|289812193|ref|ZP_06542822.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 94 Score = 42.0 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241 L L+ P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H Sbjct: 13 GLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEH 72 Query: 242 SFLYGF 247 F F Sbjct: 73 LFSEIF 78 >gi|74317115|ref|YP_314855.1| flagellar biosynthetic fliR transmembrane protein [Thiobacillus denitrificans ATCC 25259] gi|74056610|gb|AAZ97050.1| probable flagellar biosynthetic fliR transmembrane protein [Thiobacillus denitrificans ATCC 25259] Length = 249 Score = 41.6 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 6/209 (2%) Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65 E + + R+ +L P + + +++ L + Sbjct: 5 EAALGAWLYGFARLAGWTLLDPLTGRLPV-----GLRLLLAAVLALALMPGQTLAVPPPF 59 Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 A + VE G L + + + L T + A+ Sbjct: 60 TAAGLLALGVEFAWGAALALCVWLVFAAAAAALTWTGHTATAGLMTLTAEQAAPADAAWR 119 Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 +L G + +A H V AL S+ +P+ L F ++L Sbjct: 120 ALAGWLAAMAFLGASGHLLVVDALRDSFTAMPL-AVLPEAAALRELAEAGAWLFAAGVQL 178 Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYF 214 + P L ++ ++ L+ + P + ++ Sbjct: 179 ALPLLALVLLVQLAFALVARTTPGLDLFS 207 >gi|321399655|emb|CBJ44657.1| putative type III secretion system protein HrcT [Pseudomonas sp. MTR-J5-327] Length = 153 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M+ + L + R+ C+ML+P Y+ +R A ++V P + + Q N Sbjct: 11 LMLGIALAMARILPCMMLVPAFCFKYLKGPLRYAVTCAVAMVPAPSIGRVLSGQ-HENWL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ LG + GLL+ + G+++ + G + S TPL L Sbjct: 70 MIGGLLLKEMVLGVLLGLLLYMPFWMFATVGALLDSQRGALSGGQINPSLGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDF 141 + + ++ + + Sbjct: 130 LQEVLIMLVILSGG 143 >gi|238544570|dbj|BAH60921.1| putative flagellar biosynthetic protein FliR [Pantoea ananatis] Length = 71 Score = 40.4 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 + + N+ +GLLN+L PQ+ I+ I P + +G L + L + ++ H F F Sbjct: 1 IVLLLTINMVLGLLNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFGEIF 58 >gi|321399838|emb|CBJ44675.1| putative type III secretion system protein HrcT [Pseudomonas sp. MTR-J5-721] Length = 153 Score = 40.4 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M+ + L + R+ C+ML+P Y+ +R A ++V P + + Q N Sbjct: 11 LMLGIALAMARILPCMMLVPAFCFKYLKGPLRYAVTCAVAMVPAPSIGRVLSGQ-HENWL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ LG + GLL+ + G+++ + G + S TPL L Sbjct: 70 MIGGLLLKEMVLGVLLGLLLYMPFWMFATVGALLDSQRGALSGGQINPSLGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDF 141 + + ++ + + Sbjct: 130 LQEVLIMLVILSGG 143 >gi|321399627|emb|CBJ44636.1| putative type III secretion system protein HrcT [Pseudomonas sp. MTE-48-204] gi|321399631|emb|CBJ44639.1| putative type III secretion system protein HrcT [Pseudomonas sp. MTE-48-205] Length = 153 Score = 40.0 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 1/134 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M+ + L + R+ C+ML+P Y+ +R A ++V P + + Q N Sbjct: 11 LMLGIALAMARILPCMMLVPAFCFKYLKGPLRYAVTCAVAMVPAPSIGRVLSGQ-HENWL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E+ LG + GLL+ + G+++ + G + S TPL L Sbjct: 70 MIGGLLLKEMVLGVLLGLLLYMPFWMFATVGALLDSQRGALSGGQINPSLGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDF 141 + + ++ + + Sbjct: 130 LQEVLIMLVILSGG 143 >gi|323191513|gb|EFZ76774.1| lateral flagellar export/assembly protein LfiR domain protein [Escherichia coli RN587/1] Length = 67 Score = 39.6 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 21/50 (42%) Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242 ++ GLLN++ P + ++ + P + G + + + + H Sbjct: 1 MLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 50 >gi|315140170|gb|ADT81060.1| RscT [Pseudomonas fluorescens] Length = 128 Score = 38.9 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +++S+ L + R+ L+P ++ R A ++ P + + + VN Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 + L+ EL LG + G+ + + + G+++ G + + + TPL Sbjct: 71 SLAGLMFKELVLGFLLGVQLTMPFWLYESVGALLDNQRGELIGGQLNPALGSDTTPLG 128 >gi|51587276|emb|CAE53662.1| putative HrcT [Pseudomonas fluorescens bv. V] gi|51587288|emb|CAE53671.1| putative HrcT [Pseudomonas fluorescens bv. V] Length = 148 Score = 38.9 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 SL + + R+ C +L+ +I ++R+ M +++ P + ++ ++ + Sbjct: 9 SLLIGMARIYPCGILVAAFCFQHIRGRLRVTIVMVMALLPAPGIHAALEGHDYSA-LILA 67 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 LV+ E+ LG + G+L+ + + G+++ G + S TP+ L Sbjct: 68 ALVLKEVALGLLLGVLLSMPFWMFEGVGALLDNQRGALAGGQLNPSLGPDATPMGHLFKQ 127 Query: 131 IGLLALWVIDF 141 + + L Sbjct: 128 LAIFLLMTTLG 138 >gi|330948948|gb|EGH49208.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. pisi str. 1704B] Length = 55 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 26/53 (49%) Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122 L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ Sbjct: 2 LLLIGEQIIIGAGMGLSLQLFFHIFVVAGQIISTQMGMGFASMVDPTNGVSSA 54 >gi|315929208|gb|EFV08429.1| flagellar biosynthesis protein FliR domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 75 Score = 38.1 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW 55 +++ L++ R+ I+ P S + IPM ++ + ++ L P Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR 58 >gi|226446411|gb|ACO58570.1| HrcT [Pseudomonas fluorescens] Length = 133 Score = 37.3 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 56/129 (43%), Gaps = 1/129 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + SL + + R+ C +L+ +I ++R+ M +++ P + ++ ++ Sbjct: 6 FLPSLLIGMARIYPCGILVAAFCFQHIRGRLRVTIVMVMALLPAPGIHAALEGHDYSA-L 64 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + LV+ E+ LG + G+L+ + + G+++ G + S TP+ L Sbjct: 65 ILAALVLKEVALGLLLGVLLSMPFWMFEGVGALLDNQRGALAGGQLNPSLGPDATPMGHL 124 Query: 128 IGIIGLLAL 136 + + L Sbjct: 125 FKQLAIFLL 133 >gi|315140238|gb|ADT81111.1| RscT [Pseudomonas fluorescens] Length = 127 Score = 37.0 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 +M+ + L + R+ C+ML+P Y+ +R A ++V P + + Q N Sbjct: 11 LMLGIALAMARILPCMMLVPAFCFKYLKGPLRYAVTCAVAMVPAPSIGRVLSGQ-HENWL 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125 L++ E+ LG + GLL+ + G+++ + G + S TPL Sbjct: 70 MIGGLLLKEMVLGVLLGLLLYMPFWMFATVGALLDSQRGALSGGQLNPSLGPDATPLG 127 >gi|330947801|gb|EGH48223.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. pisi str. 1704B] Length = 59 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 28/48 (58%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW 55 + S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L Sbjct: 12 WVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALP 59 >gi|255994725|ref|ZP_05427860.1| putative DNA internalization-related competence protein ComEC/Rec2 [Eubacterium saphenum ATCC 49989] gi|255993438|gb|EEU03527.1| putative DNA internalization-related competence protein ComEC/Rec2 [Eubacterium saphenum ATCC 49989] Length = 831 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 29/192 (15%) Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73 L+V + ++L G + S I FA+ ++ + DL N + V Sbjct: 310 LVVIALLLFYVMLSGFAASTI-----RAFAIVLVHLISTRIHRAFDLLNVSFVVLFILAV 364 Query: 74 MVELFL---GCVHGLLIRVYTLGLQF-------TGSVISTAIG--------LNLQTSMGI 115 L + G L + + GS+ +G NL G Sbjct: 365 AKPLMIMDIGFQMSFLAIITIAVIARRLYKFKELGSLAGVQLGTSLFTQSVFNLFNPFGF 424 Query: 116 SDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSY------GTIPIGQELNFGNIFS 169 + L + + G+L L V+ V ++ S+ I + G FS Sbjct: 425 LVNFPVVYLAGFVVVGGMLLLLVMPLDVFVITKVITSFLHAVCKVLIAVNDWFYAGGRFS 484 Query: 170 SFVNMLQTTFMI 181 V F+I Sbjct: 485 YVVPAPSMFFLI 496 >gi|284810389|gb|ADB95988.1| putative HrcT [Pseudomonas cichorii] gi|284810393|gb|ADB95991.1| putative HrcT [Pseudomonas cichorii] gi|284810401|gb|ADB95997.1| putative HrcT [Pseudomonas cichorii] gi|284810405|gb|ADB96000.1| putative HrcT [Pseudomonas cichorii] Length = 146 Score = 35.8 bits (82), Expect = 5.2, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++L + + R+ C+ L+P + + + +R +A ++ +P + ++ Q + Sbjct: 13 IIALTIGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPSIRASLTGQTL-DWLD 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E +G + GLL+ + + G + G + + + + L ++ Sbjct: 72 LTALLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELGHML 131 Query: 129 GIIGLLALWVIDFH 142 + +L + + + Sbjct: 132 KQVMILLMILGGGY 145 >gi|284810345|gb|ADB95955.1| putative HrcT [Pseudomonas cichorii] gi|284810349|gb|ADB95958.1| putative HrcT [Pseudomonas cichorii] gi|284810353|gb|ADB95961.1| putative HrcT [Pseudomonas cichorii] gi|284810357|gb|ADB95964.1| putative HrcT [Pseudomonas cichorii] gi|284810361|gb|ADB95967.1| putative HrcT [Pseudomonas cichorii] Length = 144 Score = 35.8 bits (82), Expect = 5.6, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++L + + R+ C+ L+P + + + +R +A ++ +P + ++ Q + Sbjct: 13 IIALTIGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPSIRASLTGQTL-DWLD 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E +G + GLL+ + + G + G + + + + L ++ Sbjct: 72 LTALLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELGHML 131 Query: 129 GIIGLLALWVIDF 141 + +L + + Sbjct: 132 KQVMILLMILGGG 144 >gi|284810365|gb|ADB95970.1| putative HrcT [Pseudomonas cichorii] gi|284810369|gb|ADB95973.1| putative HrcT [Pseudomonas cichorii] gi|284810373|gb|ADB95976.1| putative HrcT [Pseudomonas cichorii] gi|284810377|gb|ADB95979.1| putative HrcT [Pseudomonas cichorii] gi|284810381|gb|ADB95982.1| putative HrcT [Pseudomonas cichorii] Length = 144 Score = 35.8 bits (82), Expect = 6.2, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 60/133 (45%), Gaps = 1/133 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++L + + R+ C+ L+P + + + +R +A ++ +P + +++ Q+ + Sbjct: 13 IIALTVGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPAIRESLAGQSL-DWLD 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E +G + GLL+ + + G + G + + + + L ++ Sbjct: 72 LTSLLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELGHML 131 Query: 129 GIIGLLALWVIDF 141 + +L + + Sbjct: 132 KQVMILLMILGGG 144 >gi|51587304|emb|CAE53683.1| putative HrcT [Pseudomonas fluorescens] Length = 148 Score = 35.8 bits (82), Expect = 6.2, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 1/133 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 + SL + + R+ C +L+P +I R M +++ P + + ++ + Sbjct: 7 LPSLVIAMARIYPCAILVPAFCFQHIRGMPRHVIVMVVALMPAPGIHAALAGADY-SLLM 65 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 LV+ E LG + G+L+ + + G+++ G + S TP+ + Sbjct: 66 IGALVLKEAVLGLLLGVLLSMPFWLFESVGALLDNQRGALTGGQINPSLGPDATPIGHMF 125 Query: 129 GIIGLLALWVIDF 141 + + L V Sbjct: 126 KQLAIFLLMVTLG 138 >gi|312282335|dbj|BAJ34033.1| unnamed protein product [Thellungiella halophila] Length = 597 Score = 35.8 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%) Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98 ++ A+ VL+ F DL + A + +V+ E +G L G Sbjct: 91 KIGLALTIVAVLIFFQEPNPDLSRYSVWAILTVVVVFEFTIGATLSKGFNRALGTLSAGG 150 Query: 99 SVISTA 104 + A Sbjct: 151 LALGMA 156 >gi|51587268|emb|CAE53656.1| putative HrcT [Pseudomonas fluorescens bv. I] Length = 160 Score = 35.4 bits (81), Expect = 6.4, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 1/134 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + SL + + R+ C +L+ +I +R M +++ P + + ++ Sbjct: 18 FLPSLIIGMARIYPCGILVAAFCFQHIRGMLRHILVMVMALMPAPGIHAALTEHDYSAFV 77 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 + + L LG + G+L+ + + G+++ G + S TP+ L Sbjct: 78 LAALALKE-LALGVLLGMLLAMPFWLFESVGALLDNQRGALAGGQLNPSLGPDATPIGHL 136 Query: 128 IGIIGLLALWVIDF 141 + + L V Sbjct: 137 FKQLAIFLLMVTLG 150 >gi|313229724|emb|CBY18539.1| unnamed protein product [Oikopleura dioica] Length = 592 Score = 35.4 bits (81), Expect = 7.1, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 36/160 (22%) Query: 40 LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGS 99 + M ++ + + S L +GC G L G Sbjct: 39 VIVGMLMTVAVQSSSIVCAVITPLCGIGVISLERAYSLIVGCCIGTTTTGLIAALASMGD 98 Query: 100 VISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG 159 G ++S+ + + ++G L + +P Sbjct: 99 --------------GFAESMQVSLAHLFFNMVGFLLWF-----------------VVPCA 127 Query: 160 QELNFGNIFSSFVN-----MLQTTFMIMLRLSSPFLFFYI 194 + L + ++I L L+ P L F + Sbjct: 128 RRLPIRLALWAGAETEKYRWWAFCYIIGLFLAFPGLAFIL 167 >gi|307191579|gb|EFN75077.1| Protein patched [Harpegnathos saltator] Length = 1191 Score = 35.4 bits (81), Expect = 7.3, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 48/176 (27%), Gaps = 37/176 (21%) Query: 81 CVHGLLIRVYTLGLQF----------TGSVIS--------TAIGLNLQTSMGISDSLAET 122 V G ++ + G+ G I+ A GL +GI + A T Sbjct: 321 IVIGCVLMLVYAGVALLRWKDPVRSQAGVAIAGVMLVCATVAAGLGFCALLGIPFNAATT 380 Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182 + + H L +Y + + + + + + Sbjct: 381 QIVPF-------LALGLGVHDMFL--LTHTYAELSVNEVPSGEQTGVVLKRTGLSVLLTG 431 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238 L S F ++ +P + ++ + L+ + L +V Sbjct: 432 LSNVSAFFAAALIP----------IPALRVFCLQAGILLLFNLAAMLLVFPAMVSL 477 >gi|51587272|emb|CAE53659.1| putative HrcT [Pseudomonas fluorescens] Length = 148 Score = 35.4 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 1/134 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 + SL + + R+ C +L+ +I +R M +++ P + ++ Q++ Sbjct: 6 FLPSLLIGMARIYPCAILVAAFCFQHIRGMLRHTIVMVMALLPAPGIHAALEGQDYSALM 65 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 LV+ E+ LG + G+L+ + + G+++ G + S TP+ L Sbjct: 66 -LGALVLKEVALGLLLGVLLAMPFWMFEAVGALLDNQRGALAGGQLNPSLGPDATPIGHL 124 Query: 128 IGIIGLLALWVIDF 141 + + L V Sbjct: 125 FKQLAIFLLMVSLG 138 >gi|194036630|ref|XP_001926150.1| PREDICTED: transient receptor potential cation channel subfamily A member 1 [Sus scrofa] Length = 1120 Score = 35.4 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 33/185 (17%) Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 S I + P IP V+ A +I L + + LQ F N + +VM+E+ + Sbjct: 816 TSIIFVSPLF--ISIPAYVQ-WQCGAIAIYLYW-MNFLLYLQRFENCGIF--IVMLEVIM 869 Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139 + + L + F GL+ + I D+ + L+ + + L I Sbjct: 870 KTLLKSTVVFVFLLVAF---------GLSFYVLLSIQDAFSSPLLSIMQTFS--MMLGDI 918 Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199 ++H N + L +I + P + ++ ++ Sbjct: 919 NYHDAFLD--------------PFLRNELAY--PFLSFALLITFTMFVPIVLMNLLIGLA 962 Query: 200 IGLLN 204 +G + Sbjct: 963 VGDIA 967 >gi|159395|gb|AAA29261.1| Pro-1 transporter, isoform 1 [Leishmania enriettii] Length = 437 Score = 35.4 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 19/124 (15%) Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLL-------- 86 P+ ++ ++F +V L + ++ + L++ +G G++ Sbjct: 263 PLASKIGARLSFLLVGLVGVVASVMYHASCAADEFWVLIVGRFVIGLFLGVICVACPVYT 322 Query: 87 -----------IRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135 I V G ++ +GL L S+ + + + G+ Sbjct: 323 DQNAHPKWKRTIGVMFQVFTTLGIFVAALMGLALGQSIRFDHDGDQKVMARMQGLCVFST 382 Query: 136 LWVI 139 L+ + Sbjct: 383 LFSL 386 >gi|284810385|gb|ADB95985.1| putative HrcT [Pseudomonas cichorii] gi|284810397|gb|ADB95994.1| putative HrcT [Pseudomonas cichorii] gi|284810409|gb|ADB96003.1| putative HrcT [Pseudomonas cichorii] gi|284810413|gb|ADB96006.1| putative HrcT [Pseudomonas cichorii] gi|284810417|gb|ADB96009.1| putative HrcT [Pseudomonas cichorii] Length = 146 Score = 35.4 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 +++L + + R+ C+ L+P + + + +R +A ++ +P + ++ Q + Sbjct: 13 IIALTIGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPSIRASLTGQTL-DWLD 71 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128 + L++ E +G + GLL+ + + G + G + + + + L ++ Sbjct: 72 LTALLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGXINPALGDNXSELGHML 131 Query: 129 GIIGLLALWVIDFH 142 + +L + + + Sbjct: 132 KQVMILLMILGGGY 145 >gi|167534489|ref|XP_001748920.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772600|gb|EDQ86250.1| predicted protein [Monosiga brevicollis MX1] Length = 325 Score = 35.0 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129 LV+ +G L G VI+ + L + + GI + +P + Sbjct: 105 IYLVLGLTLIGVAAAAQAEAVLTDLTILGGVIAMGVFLVMVSIFGIVGTARRSPFLLFLY 164 Query: 130 IIGLLALWVI 139 I+ ++ L+V+ Sbjct: 165 ILFMVLLFVM 174 >gi|157872327|ref|XP_001684712.1| hypothetical protein [Leishmania major strain Friedlin] gi|68127782|emb|CAJ06162.1| hypothetical protein LMJF_30_1170 [Leishmania major strain Friedlin] Length = 682 Score = 35.0 bits (80), Expect = 9.1, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGL-LNKLVPQIPI-----YFISTPYLIGLGSLF 227 + F + + + I++N + G+ L+ L P + Y P ++ + Sbjct: 490 FFGSLFFLHFM-----VLYAILYNFAQGIRLSYLHPAWNVQRFLRYVYGMPIIVYISFFI 544 Query: 228 LCLSIEIIV 236 L L ++ Sbjct: 545 LGLFFFPLM 553 >gi|51587248|emb|CAE53641.1| putative HrcT [Pseudomonas syringae pv. syringae] Length = 153 Score = 35.0 bits (80), Expect = 9.6, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 1/144 (0%) Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67 M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N Sbjct: 11 FMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAISKALESLD-DNWF 69 Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127 L++ E LG + GLL+ G+++ + G + + TPL L Sbjct: 70 AIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGEL 129 Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151 ++ + + + + Sbjct: 130 FQETLIMLVILTGGLSLMTQLIWD 153 >gi|71654023|ref|XP_815639.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70880708|gb|EAN93788.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 2798 Score = 35.0 bits (80), Expect = 9.6, Method: Composition-based stats. Identities = 10/88 (11%), Positives = 32/88 (36%), Gaps = 3/88 (3%) Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68 ++ ++I+ R+ + L + + P ++ L A+ ++V L + + Sbjct: 2713 LTGYIILPRLPALRRTLSLGNTRDVAPARIGLTVALFVAVVFLYAMATRLWAVICTLLWA 2772 Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQF 96 ++ E+ +G ++ Sbjct: 2773 TLLFLVPEIIVGIY--FVMHFLFWAFVM 2798 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.320 0.177 0.530 Lambda K H 0.267 0.0540 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,810,363,782 Number of Sequences: 14124377 Number of extensions: 315538614 Number of successful extensions: 2903343 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 2597 Number of HSP's successfully gapped in prelim test: 22826 Number of HSP's that attempted gapping in prelim test: 2856085 Number of HSP's gapped (non-prelim): 57891 length of query: 248 length of database: 4,842,793,630 effective HSP length: 135 effective length of query: 113 effective length of database: 2,936,002,735 effective search space: 331768309055 effective search space used: 331768309055 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (20.5 bits) S2: 80 (35.0 bits)