BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein
FliR [Candidatus Liberibacter asiaticus str. psy62]
(248 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|15895417|ref|NP_348766.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
acetobutylicum ATCC 824]
gi|15025140|gb|AAK80106.1|AE007715_11 FliR/FlhB fusion protein [Clostridium acetobutylicum ATCC 824]
gi|325509563|gb|ADZ21199.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
acetobutylicum EA 2018]
Length = 610
Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 105/239 (43%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
SLF++ RV + + L + +P V++ ++ S ++P++ + + N
Sbjct: 4 AYFTSLFMVFLRVFAFFIALQVMFPKSLPNTVKVMLSLCISFFVMPYI-NLSQVSALNNG 62
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y+ + E+ G + G + LG++ G + IG ++ T+ S + +
Sbjct: 63 FLYTWQCICEILTGLILGFFANLMFLGVKIGGQFLDFQIGYSMMTAYDPSSESNASLIER 122
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + ++ + I H V LV S+ ++ +G + N+ F+I +++
Sbjct: 123 FLNMFSVVLFFSIGGHEVVIKELVSSFNSVKLGTFVINDQSVMVAFNVFVQFFVIGFKIA 182
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ +I +GL+++ VPQ+ + + P I LG L + + +I SF
Sbjct: 183 LPVVLVLLITDIVMGLMSRTVPQLNVMILGMPIKILLGLTCLMIILPLIAKVLITSFSS 241
>gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium
ljungdahlii DSM 13528]
gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB
[Clostridium ljungdahlii DSM 13528]
Length = 606
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 104/236 (44%), Gaps = 1/236 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+L L+ R+ S +L+P S IP V++ + + +L+P + D + + N
Sbjct: 6 YFTALILVSIRIFSFFILVPIFFPSGIPNVVKVGLTVVMAYILMPGI-DYASISSIDNTM 64
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ + E+ G G L + ++ G+++ +G + + + + T + L
Sbjct: 65 FFVMNCLNEVAAGLTLGFLTSLCFSMVRIAGNLMDMQMGFAMVSMFDPTSNSNTTLIERL 124
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ L+ +++D HH + +L++S+ I +G + F I +++
Sbjct: 125 LYWFSLVIFFIVDGHHMLIKSLIQSFSVIKLGSFFLNQASINIIFKAFIEYFGIAIQIGI 184
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + + ++++ L+ + VPQ+ I + P + +G C ++ I + H F
Sbjct: 185 PIVLILLFTDLTMSLIARTVPQLNIMILGLPVKVLIGFASFCFALPIFLKLIEHLF 240
>gi|302874605|ref|YP_003843238.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans
743B]
gi|307690784|ref|ZP_07633230.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
cellulovorans 743B]
gi|302577462|gb|ADL51474.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans
743B]
Length = 607
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 102/239 (42%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++L LI R+ + PG+ + P ++ + + ++LP + +
Sbjct: 5 TFFVALILITLRLAGMFIAAPGILPTGTPNILKAVLILILAYMVLPVINYS-GASALTEP 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ E G G +I ++ + + GS+I +G ++ T + + T L
Sbjct: 64 TKLIIQCLNEFSTGLAVGFIINLFFIAARIAGSIIDMQVGFSMVTLFDPTANSTATYLER 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+I ++ ++ID HH V A + +Y + IG + + + I ++++
Sbjct: 124 FFNLIAIMIFFIIDGHHYVIKAFIATYDKVSIGVFFLDQGTLQEILKLFGHFYAIGVKIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + +V ++ +G+L++ +PQ+ I + P + +G L +S V ++SF
Sbjct: 184 LPIILVILVADVLMGVLSRTMPQLNIMILGMPVKLLIGFGILAVSAPFFVRLITNSFQE 242
>gi|170757192|ref|YP_001782263.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum B1 str. Okra]
gi|169122404|gb|ACA46240.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B1
str. Okra]
Length = 609
Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 106/241 (43%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ A+ + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DINSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G ++ T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ + ++ID HH + ALV+S+ I +G +N+ F I
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVINVFIQYFYIS 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +
Sbjct: 180 IKIAVPIVFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSA 239
Query: 243 F 243
F
Sbjct: 240 F 240
>gi|148380604|ref|YP_001255145.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
str. ATCC 3502]
gi|153931538|ref|YP_001384891.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum A str. ATCC 19397]
gi|153937825|ref|YP_001388360.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum A str. Hall]
gi|148290088|emb|CAL84207.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC
3502]
gi|152927582|gb|ABS33082.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
str. ATCC 19397]
gi|152933739|gb|ABS39238.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
str. Hall]
Length = 609
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 106/241 (43%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ A+ + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G ++ T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ + ++ID HH + ALV+S+ I +G +N+ F I
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYIS 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +
Sbjct: 180 IKIAVPIVFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSA 239
Query: 243 F 243
F
Sbjct: 240 F 240
>gi|322806976|emb|CBZ04546.1| flagellar biosynthesis protein FlhB [Clostridium botulinum H04402
065]
Length = 609
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 105/241 (43%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ A+ + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DISSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G + T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ + ++ID HH + ALV+S+ I +G +N+ F I
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFINQEGIKHVLNVFIQYFYIS 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +
Sbjct: 180 IKIAVPIVFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSA 239
Query: 243 F 243
F
Sbjct: 240 F 240
>gi|153939695|ref|YP_001391947.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum F str. Langeland]
gi|152935591|gb|ABS41089.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F
str. Langeland]
gi|295319965|gb|ADG00343.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F
str. 230613]
Length = 609
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 105/241 (43%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ A+ + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G + T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ + ++ID HH + ALV+S+ I +G +N+ F I
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFLNQEGIKHVLNVFIQYFYIS 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +
Sbjct: 180 IKIAVPIVFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFIFALPLFLKVLNSA 239
Query: 243 F 243
F
Sbjct: 240 F 240
>gi|168180929|ref|ZP_02615593.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum
NCTC 2916]
gi|182668325|gb|EDT80304.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum
NCTC 2916]
Length = 609
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 106/241 (43%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ A+ + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G ++ T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ + ++ID HH + ALV+S+ I +G +N+ F I
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYIS 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + S
Sbjct: 180 IKIAVPIIFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSS 239
Query: 243 F 243
F
Sbjct: 240 F 240
>gi|237796086|ref|YP_002863638.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4
str. 657]
gi|229263066|gb|ACQ54099.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4
str. 657]
Length = 609
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 105/241 (43%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ A+ + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G + T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ + ++ID HH + ALV+S+ I +G +N+ F I
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYIS 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +
Sbjct: 180 IKIAVPIIFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSA 239
Query: 243 F 243
F
Sbjct: 240 F 240
>gi|170761528|ref|YP_001787967.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum A3 str. Loch Maree]
gi|169408517|gb|ACA56928.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A3
str. Loch Maree]
Length = 609
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 105/241 (43%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ A+ + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G + T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ + ++ID HH + ALV+S+ I +G +N+ F I
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIRALVESFNVIKLGTFFINQEGIKHVLNVFIQYFYIS 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +
Sbjct: 180 IKIAVPIIFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSA 239
Query: 243 F 243
F
Sbjct: 240 F 240
>gi|226950059|ref|YP_002805150.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2
str. Kyoto]
gi|226843732|gb|ACO86398.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2
str. Kyoto]
Length = 609
Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 104/241 (43%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ + + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLVLIIAYMLVGSI-DIRSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G + T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ + ++ID HH + ALV+S+ I +G +N+ F I
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIRALVESFNVIKLGAFFINQEGIKHVLNVFIQYFYIS 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P +F ++ ++++GL+ + VPQ+ I + P I +G ++ + + + +
Sbjct: 180 IKIAVPIIFIILITDLTLGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSA 239
Query: 243 F 243
F
Sbjct: 240 F 240
>gi|187778764|ref|ZP_02995237.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC
15579]
gi|187772389|gb|EDU36191.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC
15579]
Length = 587
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 40/219 (18%), Positives = 99/219 (45%), Gaps = 1/219 (0%)
Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84
++P P+ ++ A+ + +L+ + D + N ++ E+ G + G
Sbjct: 1 MVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DISSINTINNSTALIFNIVNEILAGAILG 59
Query: 85 LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQ 144
+ + ++ G+++ +G ++ T S + T L ++ + ++ID HH
Sbjct: 60 YITNAAFVCARYAGNMMDLQVGFSMMTMFDPSTNSNVTFLERILYWFSTIVFFLIDGHHM 119
Query: 145 VFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLN 204
+ ALV+S+ I +G +N+ F I ++++ P +F ++ ++++GL+
Sbjct: 120 LIRALVESFNVIKLGAFFLNQEGIKHVINVFIQYFYISIKIAVPIVFIILITDLTLGLVA 179
Query: 205 KLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ VPQ+ I + P I +G ++ + + + +F
Sbjct: 180 RTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 218
>gi|255305289|ref|ZP_05349461.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile ATCC 43255]
Length = 604
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 102/233 (43%), Gaps = 2/233 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
+ R+ + L L + P + FA+ SI++ + N N ++
Sbjct: 2 IFVFIRIVAFFGTLRILFSAGTPALFKSLFAIIISILISSTMQIEY-ATNIDNIVLFTLY 60
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+ E G + G + + ++ GS++ +GL++ + T +N+L+
Sbjct: 61 GINETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSMTQTTLINNLMNWTA 120
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
L+ + +D HH + + S+ IPIG+ NI +N+ F+ +++ P +
Sbjct: 121 LMIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNI-DYIINIFVQCFLTGFKIAIPIVLC 179
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ + +GL+++ VPQ+ + I P I +G +SI +IV Q SH
Sbjct: 180 LLMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQISHLLSQ 232
>gi|126697834|ref|YP_001086731.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile 630]
gi|115249271|emb|CAJ67084.1| Bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile]
Length = 604
Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 102/233 (43%), Gaps = 2/233 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
+ R+ + L L + P + FA+ SI++ + N N ++
Sbjct: 2 IFVFIRIVAFFGTLRILFPAGTPALFKSLFAIIISILISSTMQIEY-ATNIDNIVLFTLY 60
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+ E G + G + + ++ GS++ +GL++ + T +++L+
Sbjct: 61 GVNETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSMTQTTLIDNLMNWTA 120
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
L+ + +D HH + + S+ IPIG+ NI +N+ F+ +++ P +
Sbjct: 121 LMIFFSMDGHHVLIRGIRYSFELIPIGKPFVDNNI-DYIINIFVQCFLTGFKIAIPIVLC 179
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ + +GL+++ VPQ+ + + P I +G +SI +IV Q SH
Sbjct: 180 LLMADFILGLISRSVPQLNVMIVGMPLKILVGIALFIISIPLIVNQISHLLSQ 232
>gi|254973928|ref|ZP_05270400.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-66c26]
gi|255091314|ref|ZP_05320792.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile CIP 107932]
gi|255312972|ref|ZP_05354555.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-76w55]
gi|255515731|ref|ZP_05383407.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-97b34]
gi|255648825|ref|ZP_05395727.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-37x79]
gi|260682043|ref|YP_003213328.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile CD196]
gi|260685641|ref|YP_003216774.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile R20291]
gi|306518939|ref|ZP_07405286.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-32g58]
gi|260208206|emb|CBA60557.1| flagellar export protein [Clostridium difficile CD196]
gi|260211657|emb|CBE01921.1| flagellar export protein [Clostridium difficile R20291]
Length = 604
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 101/233 (43%), Gaps = 2/233 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
+ R+ + L L + P + FA+ SI++ + N N ++
Sbjct: 2 IFVFIRIVAFFGTLRILFPAGTPALFKSLFAIIISILISSTMQIEY-ATNIDNIVLFTLY 60
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+ E G + G + + ++ GS++ +GL++ + T +++L+
Sbjct: 61 GINETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFDPNSMTQTTLIDNLMNWTA 120
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
+ + +D HH + + S+ IPIG+ NI +N+ F+ +++ P +
Sbjct: 121 RMIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNI-DYIINIFVQCFLTGFKIAIPIVLC 179
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ + +GL+++ VPQ+ + I P I +G +SI +IV Q SH
Sbjct: 180 LLMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIISIPLIVNQISHLLSQ 232
>gi|219854407|ref|YP_002471529.1| hypothetical protein CKR_1064 [Clostridium kluyveri NBRC 12016]
gi|219568131|dbj|BAH06115.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 609
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 100/237 (42%), Gaps = 1/237 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+L L+ R+ ++P + P V++ + + +LLP + D + +
Sbjct: 9 YFTALILVTLRIFCFFTMIPIFFPNGTPNIVKVGLTLVIAYILLPGI-DYSTVNTISSTI 67
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E G G L+ + + GS + +G ++ + + S T L L
Sbjct: 68 PFVYNCINEAAAGLTLGFLVSLCFTAFRIAGSYMDLQVGFSMMSMFDPNSSSNTTLLERL 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +D HH + +L+ S+ TI +G + + F I L+++
Sbjct: 128 MYWFCMVVFLAVDGHHMLIRSLIDSFATIKLGSFFLAQGSINIIIKAFIMYFSIALKIAI 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
P L ++ ++++ L+ + VPQ+ I + P I +G C ++ I + +SF
Sbjct: 188 PILLIILIADLTMSLIARTVPQLNIMILGLPIKILIGLGSFCFALPIFLKIMGNSFQ 244
>gi|33601553|ref|NP_889113.1| flagellar biosynthetic protein [Bordetella bronchiseptica RB50]
gi|33575989|emb|CAE33069.1| flagellar biosynthetic protein [Bordetella bronchiseptica RB50]
Length = 262
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ R+ + + P S S IP +V++ A +I + P + +
Sbjct: 11 GWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAPAIGPMPAVPPSSYA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G GL +RV +Q G + +GL+ + + L+
Sbjct: 71 GLF--LLGQQVLIGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L I+ +L +D H V ALV+S+ T+P+ + N + T F+ L L+
Sbjct: 129 LFNIVAMLVFLALDGHLLVLGALVRSFDTLPVAVGVLDRNGWGILAEWGTTIFVSGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ PQ+ ++ I P + +G + L + + F G
Sbjct: 189 LPLICALLTINLAMGILNRAAPQLSVFAIGFPVSLIVGLVLLAIVLPHSGPFLERLFEQG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|251779901|ref|ZP_04822821.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243084216|gb|EES50106.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 613
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 110/236 (46%), Gaps = 1/236 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++LF I R+ S +++ + P ++ ++ SI ++ + D + N
Sbjct: 5 AYFLALFFIFLRLTSYFVIVNAFFQTGTPHILKGVLSLIISIAVIAGV-DYSTVNEINNV 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y + E+ G V G + + ++F GS + G ++ + + + T + +
Sbjct: 64 YYLIIYGLNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHTQSTLIGN 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+I + +++D HH V L++S+ +PIG+ L + + ++ + F++ ++++
Sbjct: 124 FAYMIATVIFFIVDGHHIVIKLLIESFRIVPIGETLVYQETMMAVISTITDYFVLGVKIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ ++ +GL+++ VP IPI P LG + + + +I S++
Sbjct: 184 IPIVLIIVITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSNA 239
>gi|188588311|ref|YP_001920219.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum E3 str. Alaska E43]
gi|188498592|gb|ACD51728.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E3
str. Alaska E43]
Length = 610
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 110/236 (46%), Gaps = 1/236 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++LF I R+ S +++ + P ++ ++ SI ++ + D + N
Sbjct: 5 AYFLALFFIFLRLTSYFVIVNAFFQTGTPHILKGALSLIISIAVIAGV-DYSTVNEINNV 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y + E+ G V G + + ++F GS + G ++ + + + T + +
Sbjct: 64 YYLIIYGLNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHTQSTLIGN 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+I + +++D HH V L++S+ +PIG+ L + + ++ + F++ ++++
Sbjct: 124 FAYMIATVIFFIVDGHHIVIKLLIESFRIVPIGETLVYQETMMAVISTITEYFVLGVKIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ ++ +GL+++ VP IPI P LG + + + +I S++
Sbjct: 184 IPIVLIIVITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSNA 239
>gi|153953791|ref|YP_001394556.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
kluyveri DSM 555]
gi|146346672|gb|EDK33208.1| Fusion of flagellar biosynthesis proteins FliR and FlhB
[Clostridium kluyveri DSM 555]
Length = 606
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 100/237 (42%), Gaps = 1/237 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+L L+ R+ ++P + P V++ + + +LLP + D + +
Sbjct: 6 YFTALILVTLRIFCFFTMIPIFFPNGTPNIVKVGLTLVIAYILLPGI-DYSTVNTISSTI 64
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E G G L+ + + GS + +G ++ + + S T L L
Sbjct: 65 PFVYNCINEAAAGLTLGFLVSLCFTAFRIAGSYMDLQVGFSMMSMFDPNSSSNTTLLERL 124
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +D HH + +L+ S+ TI +G + + F I L+++
Sbjct: 125 MYWFCMVVFLAVDGHHMLIRSLIDSFATIKLGSFFLAQGSINIIIKAFIMYFSIALKIAI 184
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
P L ++ ++++ L+ + VPQ+ I + P I +G C ++ I + +SF
Sbjct: 185 PILLIILIADLTMSLIARTVPQLNIMILGLPIKILIGLGSFCFALPIFLKIMGNSFQ 241
>gi|187933790|ref|YP_001885058.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum B str. Eklund 17B]
gi|187721943|gb|ACD23164.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B
str. Eklund 17B]
Length = 613
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 109/237 (45%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++LF I R+ S +++ + P ++ ++ SI +L + D + N
Sbjct: 5 AYFLALFFIFLRLTSYFVIVNAFFQTGTPHILKGTLSLIISIAVLAGV-DYSTVNEINNV 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y + E+ G V G + + ++F GS + G ++ + + + T + +
Sbjct: 64 YYLIIYGLNEVMTGLVLGFITNMIFEVVKFAGSWMDIHAGFSMVSVLDPTSHSQTTLIGN 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+I + +++D HH V L++S+ +PIGQ L + + ++ + F++ ++++
Sbjct: 124 FSYMIATVIFFIVDGHHIVIKLLIESFRIVPIGQTLVYQETMMAVISTITEYFVLGVKIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + ++ ++ +GL+++ VP IPI P LG + + + +I S +
Sbjct: 184 VPIVLIIVITDLCLGLISRTVPTIPIMIFGLPIKNLLGLITFVILLPLIFKIVSSAI 240
>gi|33592490|ref|NP_880134.1| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I]
gi|33572136|emb|CAE41679.1| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I]
gi|332381908|gb|AEE66755.1| flagellar biosynthetic protein FliR [Bordetella pertussis CS]
Length = 262
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ R+ + + P S S IP +V++ A +I + P + +
Sbjct: 11 GWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAPAIGPMPAVPPSSYA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G GL +RV +Q G + +GL+ + + L+
Sbjct: 71 GLF--LLSQQVLIGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L I+ +L +D H V ALV+S+ T+P+ + N + T F+ L L+
Sbjct: 129 LFNIVAMLVFLALDGHLLVLGALVRSFDTLPVAVGVLDRNGWGILAEWGTTIFVSGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ PQ+ ++ I P + +G + L + + F G
Sbjct: 189 LPLICALLTINLAMGILNRAAPQLSVFAIGFPVSLIVGLVLLAIVLPHSGPFLERLFEQG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
Length = 614
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 120/233 (51%), Gaps = 1/233 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++LF I RV + + + P ++ F++ FS LL + D ++ + +
Sbjct: 5 AYFLALFFIFLRVTAFFAITNIFFPNGTPKTLKAMFSLIFSFALLGGI-DYSNINSITSN 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y ++ E+ G V GL+ + + GS+I IGL++ ++ + + T +
Sbjct: 64 YYLIIYMISEVTTGLVLGLISNIAFEVVLMAGSLIDVHIGLSMVNTIDPNSKTSTTISGN 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ + L+ +V+D HH + +L++S+ +P+G+ L + + + ++ F+I L+++
Sbjct: 124 LLHYVALMIFFVVDGHHMLIKSLIESFIILPMGKSLMYTDTMMVLIEVIAKYFVIGLKIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
P + I+ ++ +GL+++ VPQI + + P + +G L + +S+ II+ F
Sbjct: 184 IPIVLIIILTDLCMGLISRAVPQINVMILGMPVKMLVGILAISVSLPIIIKLF 236
>gi|255523689|ref|ZP_05390655.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
P7]
gi|296186693|ref|ZP_06855095.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
P7]
gi|255512558|gb|EET88832.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
P7]
gi|296048730|gb|EFG88162.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
P7]
Length = 320
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 110/236 (46%), Gaps = 1/236 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+L LI R+ +++P S P V++ + + +L+P + T + N N
Sbjct: 6 YFTALILISIRMFCFFVVVPIFFPSGTPATVKVGITLIMAYILIPGVDYT-GINNINNNL 64
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ M E G G + + ++F GS++ +G ++ T + S T + +
Sbjct: 65 PFIINCMNEAVAGFTLGFITNLCFNSVRFAGSIMDMQVGFSMMTMFDPTSSSNTTLIEHI 124
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +++D HH + AL++S+ I +G N + + + F I ++++
Sbjct: 125 LYWFSMVVFFIVDGHHMLIKALIESFKVIKLGNFFLNQNSINLIIRVFIEYFEIAVKIAI 184
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + ++ +I++GL+++ VPQ+ + + P I +G C ++ I + +SF
Sbjct: 185 PIVLIILITDITMGLVSRTVPQLNVMILGMPVKILVGLGAFCFALPIFLKMIENSF 240
>gi|317406212|gb|EFV86460.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans
C54]
Length = 262
Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ R+ + + P S S +P++V++ A ++ + P L +
Sbjct: 11 GWIGQFLWPFVRILALVGTAPLFSESTVPVKVKIGLAFVLAVAVSPALDPAPPIAPGSFA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +VM ++ +G G +R+ +Q G + +GL+ + S L+
Sbjct: 71 GLW--MVMQQVLIGIAMGFTMRLVFAAVQTAGEFVGLQMGLSFASFFDPSTGANTAVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L I+ +L +D H V ALV+S+ T+P+ N + V +T F+ L L+
Sbjct: 129 LFNIVAMLTFLALDGHLLVLAALVRSFDTLPVAAIQLHQNGWGVVVEWGKTVFVSGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ PQ+ ++ + P + +G + L + + F G
Sbjct: 189 LPLICALLTINLAMGILNRAAPQLSVFSVGFPVSLIVGVVLLTVVLPNSGPFLESLFESG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|163856446|ref|YP_001630744.1| flagellar biosynthesis protein FliR [Bordetella petrii DSM 12804]
gi|163260174|emb|CAP42476.1| flagellar biosynthesis protein FliR [Bordetella petrii]
Length = 262
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 2/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ ++ R+ + + P S S IP+++++ A ++ + P L +
Sbjct: 10 DAWLLQFLWPFVRMLALVGSAPLFSESTIPIRIKVALAFMLTVAVAPGLEPPPAIPPGSY 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L+ ++ +G G +R+ +Q G + +GL+ + S L+
Sbjct: 70 AGLW--LLGQQVLIGIAMGFTMRIVFAAVQTAGEFVGLQMGLSFASFFDPSTGANTAVLS 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ I+ +L +D H V ALV+S+ +P+ Q N + V QT F+ L L
Sbjct: 128 RLLNIVAMLVFLALDGHLLVLAALVRSFDVLPLTQLTLDPNGWGILVQWGQTIFVSGLLL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN+ PQ+ ++ + P + G L L +
Sbjct: 188 ALPLICALLTINLAMGILNRAAPQLSVFAVGFPVSLITGLLLLAAVLPHAAPFLEGLMRD 247
Query: 246 GF 247
G
Sbjct: 248 GL 249
>gi|150019066|ref|YP_001311320.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
beijerinckii NCIMB 8052]
gi|149905531|gb|ABR36364.1| flagellar biosynthetic protein FlhB [Clostridium beijerinckii NCIMB
8052]
Length = 613
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 102/232 (43%), Gaps = 1/232 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++LFLI R+ S M + + P ++ F++ S ++ + D + +
Sbjct: 6 YFLALFLIFLRITSYFMAVQIFFPTGTPQIMQGVFSLILSFGIVAGI-DHSTVSAVNSSY 64
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ G + G + + ++ G + G ++ + + + T L +L
Sbjct: 65 MLVFYAISEIMSGLILGYITNLIFQVVKLAGEWMDIHAGFSMVSVLDPTTQTTSTLLGNL 124
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I L +++D HH V LV+S IPIG+ + + + + F + ++++
Sbjct: 125 SYFISLAFFFIVDGHHVVINMLVESTKIIPIGKTIVYQETLMEVMKTIFDYFTLGVKIAI 184
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
P + ++ ++ +GL+++ VP IPI + P LG + + + +++
Sbjct: 185 PIVLIIVITDVCLGLISRTVPTIPIMILGMPIKNLLGLITYIILLPLMLKLI 236
>gi|293605016|ref|ZP_06687411.1| flagellar biosynthetic protein FliR [Achromobacter piechaudii ATCC
43553]
gi|292816585|gb|EFF75671.1| flagellar biosynthetic protein FliR [Achromobacter piechaudii ATCC
43553]
Length = 262
Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 101/241 (41%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ R+ + + P S S IP++V++ + ++ + P L +
Sbjct: 11 GWIGQFLWPFVRILALVGTAPLFSESAIPVKVKVGLSFVLAVAVSPALDPMPPIAPGSYA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +VM ++ +G G +R+ +Q G + +GL+ + S L+
Sbjct: 71 GLW--MVMQQVLIGIAMGFTMRIVFAAVQTAGEFVGLQMGLSFASFFDPSSGANTAVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L ++ +L +D H V ALV+S+ T+P+ N + V +T F+ L L+
Sbjct: 129 LFNMVAMLTFLALDGHLLVLAALVRSFDTLPVAAIQLHQNGWGVVVEWGKTVFVSGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ Q+ ++ + P + +G L + + F G
Sbjct: 189 LPLICALLTINLAMGILNRAAQQLSVFSVGFPVTLIIGVTVLTVVLPHAGPFLETLFESG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|253681513|ref|ZP_04862310.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum D str. 1873]
gi|253561225|gb|EES90677.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
botulinum D str. 1873]
Length = 610
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 107/237 (45%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +FLI R+ S + ++P P V++ F + S +++P + D ++ N
Sbjct: 5 GYFLGIFLISLRMFSFVEVVPIFFPKGTPNVVKIMFTVILSFMIIPGI-DYSNISNINGN 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++E+ G G + + +++ G+ + +G + T + + T +
Sbjct: 64 LQLIMYCLIEITTGLTFGFITNICFSCIRYAGAFMDLQVGFAMITMFDPNSNSNVTLIER 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ L+ ++D + ++S+ I IG+ + N +N+ F + +R++
Sbjct: 124 LLYWFSLIVFIIVDGPRMIIKIFIESFNVIHIGKFILNQNSAMHVINVFVKYFQLGIRIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + I+ ++++GL+ K VPQ+ I + P I LG + LS+ +I SF
Sbjct: 184 IPIVLIIILTDLTMGLVAKTVPQLNIMILGMPVKIILGLSVIALSLPVIFNIIISSF 240
>gi|182418459|ref|ZP_02949753.1| fusion of flagellar biosynthesis proteins FliR and FlhB
[Clostridium butyricum 5521]
gi|237666957|ref|ZP_04526942.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182377841|gb|EDT75385.1| fusion of flagellar biosynthesis proteins FliR and FlhB
[Clostridium butyricum 5521]
gi|237658156|gb|EEP55711.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 612
Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 99/239 (41%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +FLI R+ S + S P+ + F++ + ++ + D + +
Sbjct: 5 AYFLGIFLIFLRISSYFVATNIFFPSGTPIMFKTGFSIIIAYGIILGV-DHSTILAIDSN 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ E+ G + G + + + GS I G ++ T + + + T + +
Sbjct: 64 YMIAFYIISEVLTGLILGYITNLVFQAAKLAGSWIDIHAGFSMVTVLDPATQTSTTLMGN 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L + L+ ++I+ + ++ +S +P+G + + + F++ ++++
Sbjct: 124 LFYFVSLVFFFMINGQELIVKSIYESISIVPLGHTIVYQETVMGAAETIVDFFVLGVKIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ +I +GL+ + VP IPI P LG + + + ++ +
Sbjct: 184 LPIVLIIVMTDICLGLITRTVPTIPIMIFGMPIKNILGFITFLIIMPTMLKIIGTAIYE 242
>gi|73539699|ref|YP_300066.1| flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134]
gi|72123036|gb|AAZ65222.1| Flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134]
Length = 261
Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 100/241 (41%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + I P S IP +V++ A ++V+ P L + + + +
Sbjct: 11 GWIATFLWPFFRLLALIGTAPLFGESTIPGRVKVGLAALTAMVVSPTLGNLPVVPVYSWQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+++ E+ +G G +R+ +Q G +I +GL + + L
Sbjct: 71 G--LIIILNEVGIGLATGFTMRLVFAIVQQAGEIIGMQMGLGFASFFDRAAGGQTMVLAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ II +L +D H + ALV S+ +PIG G + + F L L+
Sbjct: 129 FLNIIAVLLFLAMDGHLLMLGALVDSFQGLPIGATPVSGEGWHAVARAGGMVFSSGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ PQ+ I+ + P + G L L L + + H G
Sbjct: 189 LPMIAALLTLNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLALVMPQMGSYMQHMIEAG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|82702486|ref|YP_412052.1| flagellar biosynthetic protein FliR [Nitrosospira multiformis ATCC
25196]
gi|82410551|gb|ABB74660.1| flagellar biosynthetic protein FliR [Nitrosospira multiformis ATCC
25196]
Length = 260
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 99/246 (40%), Gaps = 2/246 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
++ ++S F R+ + + + P L +P++V++ + ++V+ P L ++
Sbjct: 6 SVDLNAWLISFFWPAARILALLSVAPVLGNLAVPVRVKVGLGVLVALVVAPTLESVPKIE 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
++ +G G +R+ ++ G + +GL T +
Sbjct: 66 LASAPGLLVL--GQQIMIGLAMGFAMRIIFSAIELAGEIAGLQMGLGFATFFTPHSDGSS 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
L +G++G LA + H + AL+ S+ PI E + F +
Sbjct: 124 LVLGRFLGLLGTLAFLSFNGHLLMLSALIDSFNAFPISTEPFSNMGWKRLAEWGSVIFSV 183
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L+L+ P + ++ N+++G+L + PQ+ I+ + P + +G L LS+
Sbjct: 184 GLQLALPVVAALLIVNLALGILTRASPQLNIFAVGFPITLMIGMSALMLSLPHFTPVLER 243
Query: 242 SFLYGF 247
G
Sbjct: 244 LITDGL 249
>gi|186477690|ref|YP_001859160.1| flagellar biosynthetic protein FliR [Burkholderia phymatum STM815]
gi|184194149|gb|ACC72114.1| flagellar biosynthetic protein FliR [Burkholderia phymatum STM815]
Length = 260
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 106/240 (44%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ + + P +P +V++ A ++++ P + F +
Sbjct: 11 VWLTAFLWPFVRILALMATAPAFGDKSLPNRVKIGLAGFVTLIVAPTIGALPSATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ +Q G +I ++GL T + + ++
Sbjct: 71 GIWI--IVNQFLIGAALGFTMQIVFGAVQAAGDIIGMSMGLGFATFFDPHAAGSTDVMSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ +I +L +D H QV ALV+++ +P+ + N + V T L LS
Sbjct: 129 YVYMIAILTFLALDGHLQVLSALVQTFQALPVSANVLGANGWRVLVGWGSTVVSAGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQ+ ++ + P + G L + L + ++ F+ F G
Sbjct: 189 LPIVTALLITNLALGILNRAAPQVGVFQVGLPVTVITGLLLIQLMLPNMMPFFARVFESG 248
>gi|288942623|ref|YP_003444863.1| flagellar biosynthetic protein FliR [Allochromatium vinosum DSM
180]
gi|288897995|gb|ADC63831.1| flagellar biosynthetic protein FliR [Allochromatium vinosum DSM
180]
Length = 260
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 101/240 (42%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+SL R+ + ++++P I +VRL A+ + ++ P L + +
Sbjct: 14 WTVSLVWPFVRISAMLLVMPVFGARQINARVRLGLALLLAWMIAPQLPEVPAIDPLSVGG 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + + +G G ++ + + G I+ ++GL +++ + ++
Sbjct: 74 --VVVAIEQALIGIAMGFVVTLVFSAINQAGEAIALSMGLGFASAVDPVGGVQVPMISQY 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ II L ++ H +F L++S+ T PIG + N F + ++
Sbjct: 132 LSIIATLIFLAMNGHLVLFELLLRSFETFPIGLDGPDNEDLWYIANFGSQMFAGAVLIAL 191
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ N+++G++ + PQ+ I+ I P I G L + L++ + + L
Sbjct: 192 PAVASLLLVNLAMGVVTRAAPQLNIFAIGFPITILAGFLIILLTLPSLTARIGDFLLTAL 251
>gi|146312187|ref|YP_001177261.1| flagellar biosynthesis protein FliR [Enterobacter sp. 638]
gi|145319063|gb|ABP61210.1| flagellar biosynthetic protein FliR [Enterobacter sp. 638]
Length = 264
Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + IM P LS IP +V++ M + V+ P L + +
Sbjct: 11 EWLGLYFWPLLRVMALIMTAPILSEKSIPKRVKIGLGMLITFVIAPTLP---PVNVPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + ++ +G G +++ ++ G +I +GL+ T L L
Sbjct: 68 PQAIWLALQQVLIGVAIGFTMQLAFAAIRTAGELIGLQMGLSFATFFDPGSHLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+I ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 128 VIDMLAMLLFLTFNGHLWLISMLVDTFHTLPIGGNPVNSNAFLALTRAAGLIFINGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+S+GLLN++ PQ+ ++ I P + +G + + L + +I H F
Sbjct: 188 LPVITLLLTVNLSLGLLNRMAPQLSVFVIGFPITLTVGLILMGLLMPLIAPFCEHLFSEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|307318937|ref|ZP_07598368.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti AK83]
gi|306895351|gb|EFN26106.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti AK83]
Length = 250
Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats.
Identities = 102/243 (41%), Positives = 148/243 (60%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M PE +++LF CR+G C+M++PG S + +PMQ+RL A+A S+ +LP +W I
Sbjct: 1 MITDPEGTVLALFAAFCRIGGCVMIMPGFSTARVPMQIRLFIAVALSMAILPIMWTDIYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q Y LV E +G V GL+ R Y LGLQF G+ I+ +G + + + A
Sbjct: 61 QVTGKGHDYLYLVATETAVGAVIGLVARYYVLGLQFAGTAITMLMGFGSPPAADVLEDTA 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E L S+IG GL+ L+++DFHH +F A+ +SY +PIG + + N L TFM
Sbjct: 121 ENQLTSMIGFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGTLITLTNSLGQTFM 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRL+SPF+ + ++FN++IG++NKL PQIP+YFIS PYLI G L L I ++ F+
Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA 240
Query: 241 HSF 243
F
Sbjct: 241 DGF 243
>gi|187478198|ref|YP_786222.1| flagellar biosynthetic protein [Bordetella avium 197N]
gi|115422784|emb|CAJ49312.1| flagellar biosynthetic protein [Bordetella avium 197N]
Length = 264
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 98/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M R+ + + P S S IP++V++ A + + P L +
Sbjct: 11 GWMGQFLWPFIRILALVGSAPLFSESTIPVKVKIGLAFMLAAAIAPGLPPMPSVSPSSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ ++ +G G +RV +Q G I +GL+ + L+
Sbjct: 71 G--LLLLAQQVLIGVALGFTMRVVFSAVQTAGEYIGLQMGLSFASFFDPGTGANTAVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I+ +L +D H + ALV+S+ +P+ + N V T F+ L L+
Sbjct: 129 FMNILAMLIFLALDGHLLMLAALVRSFDILPLTPAVLDRNGLGVLVQWGGTVFISGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ PQ+ ++ + P ++ +G L L + + F G
Sbjct: 189 LPLVCALLTINLAMGILNRAAPQLTVFAVGFPIMLTIGLLVLSVVLPHSGPFLEQLFERG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|222147597|ref|YP_002548554.1| flagellar biosynthesis protein FliR [Agrobacterium vitis S4]
gi|221734585|gb|ACM35548.1| flagellar biosynthetic protein FLIR [Agrobacterium vitis S4]
Length = 250
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 98/247 (39%), Positives = 157/247 (63%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+GSC M +PG + S IP Q+RL A+A S+ P +WDT+
Sbjct: 1 MITDPQGSVLALFLVFCRIGSCFMTMPGFASSRIPTQIRLLLAVAVSMACTPLVWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + L+ E +G V GL+ R +TLGLQF G++++ IG N + + + A
Sbjct: 61 KVSSGGSIFVALIFTETLIGAVFGLITRFFTLGLQFAGAILTMMIGFNSTATADVLEDGA 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E + ++I GL+ L+++DFHH VF AL+ SY +P+G + + + + T+M
Sbjct: 121 ENQMTNMISFCGLMMLFMMDFHHVVFRALIDSYTVMPMGGVPDTQKMLITLTDTASRTYM 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+MLRLSSPF+ + ++FN+ +GL+NKL PQIP+Y+ISTPYLI G L + SI +++ QF+
Sbjct: 181 LMLRLSSPFIIYGLMFNLGVGLVNKLAPQIPVYYISTPYLITGGMLLVYWSIGVMMRQFA 240
Query: 241 HSFLYGF 247
+F+ F
Sbjct: 241 DAFIPIF 247
>gi|253573536|ref|ZP_04850879.1| flagellar biosynthetic protein FliR [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847064|gb|EES75069.1| flagellar biosynthetic protein FliR [Paenibacillus sp. oral taxon
786 str. D14]
Length = 262
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 7/243 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI CR+ + ++ P S +P ++ FA ++V+L + + N
Sbjct: 8 ISIFMLIFCRMTAFFVVSPIFSSRSVPNTFKVGFAGIIAVVILLTIGPNQSIP---NDLG 64
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +++ E+ +G + G + + +Q GS I IG + + + L +L
Sbjct: 65 YILVIIREVLVGLLMGYVANLIFSVIQMAGSFIDIQIGFGIANVIDPMTGASAPVLGNLK 124
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIP----IGQELNFGNIFSSFVNMLQTTFMIMLR 184
II L ++ HH + A+++SY +P + Q++ GN+ V FM+ +
Sbjct: 125 YIIATLVFLSMNGHHYLLDAVIRSYNWVPLSNQVFQQIYNGNLSEFLVQTFSQAFMLAFQ 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+S+P + V ++++G L + PQ I+ I P I +G L L + + + F F
Sbjct: 185 MSAPLVVALFVTDVALGFLARTAPQFNIFVIGIPVKIIVGLLVLLVLVPGFIVAFQALFE 244
Query: 245 YGF 247
F
Sbjct: 245 VLF 247
>gi|311105948|ref|YP_003978801.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans A8]
gi|310760637|gb|ADP16086.1| flagellar biosynthetic protein FliR [Achromobacter xylosoxidans A8]
Length = 262
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 102/241 (42%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ R+ + + P S S IP++V++ + ++ + P L +
Sbjct: 11 GWIGQFLWPFVRILALVGTAPLFSESLIPIKVKIGLSFVLAVAISPALDPVPPIAPGSFT 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +VM ++ +G G +R+ +Q G + +GL+ + S L+
Sbjct: 71 GLW--MVMQQVLIGIALGFTMRLVFAAVQTAGEFVGLQMGLSFASFFDPSSGANTAVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L II +L +D H V ALV+S+ T+P+ N F V +T F+ L L+
Sbjct: 129 LFNIIAMLTFLALDGHLLVLAALVRSFDTLPVAMIQLHQNGFGVVVEWGKTIFISGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ Q+ ++ I P + +G L + + F G
Sbjct: 189 LPLICALLTINLAMGILNRAAQQLSVFSIGFPVTLIIGVTILTVVLPHAGPFLESLFESG 248
Query: 247 F 247
F
Sbjct: 249 F 249
>gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040188|gb|ACT56984.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter
asiaticus str. psy62]
Length = 248
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL
Sbjct: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA
Sbjct: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM
Sbjct: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS
Sbjct: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
Query: 241 HSFLYGFF 248
HSFLYGFF
Sbjct: 241 HSFLYGFF 248
>gi|150395511|ref|YP_001325978.1| flagellar biosynthesis protein FliR [Sinorhizobium medicae WSM419]
gi|150027026|gb|ABR59143.1| flagellar biosynthetic protein FliR [Sinorhizobium medicae WSM419]
Length = 250
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 101/243 (41%), Positives = 149/243 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M PE +++LF CR+G CIM++PG S + +PMQ+RL A+A S+ +LP +W I
Sbjct: 1 MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQIRLFVAVAISMAILPVMWTDIYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q Y LV E +G V GL+ R Y LGLQF G+ ++ +G + + + + A
Sbjct: 61 QVTGKGHDYLYLVATETAVGAVIGLVARYYVLGLQFAGTAMTMMMGFSPPPTADVLEDTA 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E L SLI GL+ L+++DFHH +F A+ +SY +PIG + + + N L+ TFM
Sbjct: 121 ENQLTSLISFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGMLITLTNSLEQTFM 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRL+SP + + ++FN++IG++NKL PQIP+YFIS PYLI G L L I ++ F+
Sbjct: 181 IMLRLASPLVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA 240
Query: 241 HSF 243
F
Sbjct: 241 DGF 243
>gi|15964440|ref|NP_384793.1| flagellar biosynthesis protein FliR [Sinorhizobium meliloti 1021]
gi|307311582|ref|ZP_07591223.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti BL225C]
gi|15073617|emb|CAC45259.1| Probable flagellar biosynthetic transmembrane protein
[Sinorhizobium meliloti 1021]
gi|306899599|gb|EFN30228.1| flagellar biosynthetic protein FliR [Sinorhizobium meliloti BL225C]
Length = 250
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 102/243 (41%), Positives = 149/243 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M PE ++++LF CR+G C+M++PG S + +PMQ+RL A+A S+ +LP +W I
Sbjct: 1 MITDPEGMVLALFAAFCRIGGCVMIMPGFSTARVPMQIRLFIAVALSMAILPIMWTDIYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q Y LV E +G V GL+ R Y LGLQF G+ I+ +G + + + A
Sbjct: 61 QVTGKGHDYLYLVATETAIGAVIGLVARYYVLGLQFAGTAITMLMGFGSPPAADVLEDTA 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E L S+IG GL+ L+++DFHH +F A+ +SY +PIG + + N L TFM
Sbjct: 121 ENQLTSMIGFAGLMILFMLDFHHVIFEAIAQSYRVMPIGAGFDPQGTLITLTNSLGQTFM 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRL+SPF+ + ++FN++IG++NKL PQIP+YFIS PYLI G L L I ++ F+
Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNKLAPQIPVYFISQPYLIMGGLFLLYLGIAAMLRLFA 240
Query: 241 HSF 243
F
Sbjct: 241 DGF 243
>gi|291613056|ref|YP_003523213.1| flagellar biosynthetic protein FliR [Sideroxydans lithotrophicus
ES-1]
gi|291583168|gb|ADE10826.1| flagellar biosynthetic protein FliR [Sideroxydans lithotrophicus
ES-1]
Length = 262
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 105/241 (43%), Gaps = 2/241 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + + R+ + I P + +P ++++ FA+A +I++ P L +L
Sbjct: 10 SAWLAAFIFPLARILALIASSPLYGIKEVPARIKVGFAIAITIIIAPTLDIPANLDPASA 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + + ++ G + G IR+ + ++ G + +GL + ++ +
Sbjct: 70 QGLFVLV--QQIVAGVIIGFSIRLIFVAVEMAGDLTGMQMGLGFASFYDPVNATFTPIVA 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+GI+ LA + H + AL S+ PIG + + F + + F L+
Sbjct: 128 QFLGILASLAFLAANGHLYLLVALADSFRDFPIGATVPSAHAFRTMAEWGGSLFSHALQF 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P + ++ NI++G+L + PQ+ I+ + P I +G + L L++ + +
Sbjct: 188 SLPLIGALLITNIALGILARSAPQLNIFAVGFPITIAVGFVTLWLTLPYLAPVMDYFTHE 247
Query: 246 G 246
G
Sbjct: 248 G 248
>gi|209547954|ref|YP_002279871.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533710|gb|ACI53645.1| type III secretion system inner membrane R protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 250
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 103/243 (42%), Positives = 153/243 (62%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A+A SI ++P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L++ E +G ++G+L R+YTLG+QF ++I+T +G S I +
Sbjct: 61 AVHTGSGTYIGLIVSESLIGVMYGMLARIYTLGMQFAATIIATMVGYTQPGSADIIEDTP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E+ L+ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T
Sbjct: 121 ESSLSGFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFSDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G + SI +V QF
Sbjct: 181 IMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLVYFSIAALVSQFG 240
Query: 241 HSF 243
SF
Sbjct: 241 QSF 243
>gi|332799193|ref|YP_004460692.1| flagellar biosynthetic protein FliR [Tepidanaerobacter sp. Re1]
gi|332696928|gb|AEE91385.1| flagellar biosynthetic protein FliR [Tepidanaerobacter sp. Re1]
Length = 258
Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/247 (17%), Positives = 109/247 (44%), Gaps = 3/247 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M ++ E+ ++ LI+ R + L P IP Q+++ A S ++ P + +L
Sbjct: 1 MNVNYEVALIKYLLILFRCLGFLTLTPVFGRREIPFQIKIGLAALLSFIVYPIIP---EL 57
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ N S V+ EL G G + L G +I +G + + +
Sbjct: 58 ELNNNLWIVSASVLRELMAGITMGYATFLLFSSLYLAGGIIDLEMGFGMVNVLDPQSNAQ 117
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + I+ +L ++ HH + A++KSY +P+G+ + + + + + F+
Sbjct: 118 VPLMGNYYYILTILLFLTVNGHHMLISAIIKSYDLLPLGKPVYQEGLLNVIIVSFKDMFI 177
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ ++++ P + + ++G++ + VPQ+ ++ + P I +G + + + + +
Sbjct: 178 LGVQIALPVTAIIFLTDFALGIIARTVPQMNVFIVGLPLKIAIGMIGMIIVFPMYLVILD 237
Query: 241 HSFLYGF 247
+ + +
Sbjct: 238 YIYNGTY 244
>gi|261340415|ref|ZP_05968273.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC
35316]
gi|288317507|gb|EFC56445.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC
35316]
Length = 261
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + I P LS IP +V++ + +I++ P L + +
Sbjct: 11 QWLGLYFWPMLRVLALISTAPILSERTIPKRVKVGLGIIITIIIAPSLP---PVDIPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G G +++ ++ G +I +GL+ T + L L
Sbjct: 68 AKAVWVALQQIMIGVAVGFTMQLAFAAVRTAGELIGLQMGLSFATFIDPGSHLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+I ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 128 IIDMLAMLLFLTFNGHLWLISMLVDTFHTLPIGDNPVNSNAFLALTRAAGLIFLNGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+S+GLLN++ PQ+ ++ I P + +G L + L + +I H F
Sbjct: 188 LPIITLLLTVNLSLGLLNRMAPQLSVFVIGFPVTLTVGILLMSLLMPLIAPFCEHLFSEL 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|325981179|ref|YP_004293581.1| flagellar biosynthetic protein FliR [Nitrosomonas sp. AL212]
gi|325530698|gb|ADZ25419.1| flagellar biosynthetic protein FliR [Nitrosomonas sp. AL212]
Length = 265
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 110/241 (45%), Gaps = 1/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + + R+ + I P L P++V+L A+ +I++LP + ++ + +
Sbjct: 11 TLLAAFIWPLSRILALIASAPILGNPSTPVRVKLGLAIMITILILPLVEKSLPQIDPASG 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + ++ +G G ++RV + ++ G +I +GL +S +
Sbjct: 71 IGLVIL-LQQILIGAAIGFVMRVVFVAVEMAGELIGLQMGLGFAIFFDPQNSGQIDIIGR 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+G+I LA +D H + + +S+ T+PIG F++ N F L+LS
Sbjct: 130 FLGVIASLAFLAMDGHLLMIALISQSFSTLPIGSAALTDVTFTTLANWGGEIFKSGLQLS 189
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ NI++G+L ++ PQ+ I+ + P + +G L L LS+ + G
Sbjct: 190 LPVLTALLITNIALGILTRVAPQLNIFAVGFPLTLAIGFLVLGLSMPFYTPILEYLVHDG 249
Query: 247 F 247
Sbjct: 250 L 250
>gi|218463239|ref|ZP_03503330.1| flagellar biosynthesis protein FliR [Rhizobium etli Kim 5]
Length = 250
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 101/247 (40%), Positives = 152/247 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI +LP LWDT+
Sbjct: 1 MISDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVLPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S +++
Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVTEDSP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L++ I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T
Sbjct: 121 ETSLSAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G +S+ +V QF
Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLFYVSVAALVSQFG 240
Query: 241 HSFLYGF 247
+F +
Sbjct: 241 QAFSSIY 247
>gi|297617156|ref|YP_003702315.1| flagellar biosynthetic protein FliR [Syntrophothermus lipocalidus
DSM 12680]
gi|297144993|gb|ADI01750.1| flagellar biosynthetic protein FliR [Syntrophothermus lipocalidus
DSM 12680]
Length = 254
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 100/236 (42%), Gaps = 1/236 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ RV + P S IP+Q+++ + + ++ ++ N +
Sbjct: 8 FLLVFARVSGLFLSAPVYSSRQIPVQIKVFLGLLLAAIIT-YVRPISTRVELDNTGIFLV 66
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ VE+F G GL V +Q G ++ +G + M + + S ++
Sbjct: 67 ALAVEVFTGYALGLAGYVLFAAVQLAGQLVDMQMGFGIVNVMDPQSGMQVPLVGSFYYLL 126
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L ID HHQ+ A+ SY IPI + V + F++ +++++P +
Sbjct: 127 AILVFLGIDGHHQLLSAVYHSYDVIPILGAKFQPGFTAFLVKLGGYMFVLGVKIAAPVVA 186
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+V + ++G + + VPQ+ I+ + P I G + L L I + V+ F F
Sbjct: 187 ALLVADTALGFMARTVPQMNIFLVGMPLKILGGIVMLLLVIPVYVWLLQVLFAQFF 242
>gi|222084893|ref|YP_002543422.1| flagellar byosinthesis transmembrane protein [Agrobacterium
radiobacter K84]
gi|221722341|gb|ACM25497.1| flagellar byosinthesis transmembrane protein [Agrobacterium
radiobacter K84]
Length = 250
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 117/247 (47%), Positives = 157/247 (63%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL CR+G C+M+LPG S +P Q+RL A A S+ +LP LW+TI
Sbjct: 1 MISDPQGTILALFLAFCRIGGCVMVLPGFSSGRVPPQIRLLLAAALSMAILPLLWNTIYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + A Y L+ E +G ++G++ R+YTLGLQF G+VIS IG N M + +
Sbjct: 61 EVSKSSATYISLIFTETVIGLMYGMMARLYTLGLQFAGTVISMLIGFNAPGGMDVIEDSN 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L SLI GL+ L+V+DFHH V ALV+SY IP G ++ S + L TT
Sbjct: 121 ETSLTSLISFCGLMILFVLDFHHYVLQALVESYSVIPFGGHVDVRASLISVTDTLATTTF 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRL+SPFL + ++F ISIG +NKL PQIPIYFISTPYL+ G L LSI ++ QFS
Sbjct: 181 IMLRLASPFLLYGLMFQISIGFINKLAPQIPIYFISTPYLLMGGLFMLYLSIAAMISQFS 240
Query: 241 HSFLYGF 247
+FL F
Sbjct: 241 GAFLTVF 247
>gi|296103570|ref|YP_003613716.1| flagellar biosynthesis protein FliR [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058029|gb|ADF62767.1| flagellar biosynthesis protein FliR [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 261
Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + I P LS IP +V++ + +I++ P L + +
Sbjct: 11 QWLGVYFWPMLRILALITTAPILSEKAIPKRVKVGLGIIITIIVAPSLPA---VNIPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G G +++ ++ G +I +GL+ T + L L
Sbjct: 68 ANAVWVALQQILIGVAVGFTMQLAFAAVRTAGELIGLQMGLSFATFVDPGSHLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+I ++ +L + H + LV ++ T+PIG+ N F + F+ L L+
Sbjct: 128 IIDMLAMLLFLSFNGHLWLISMLVDTFHTLPIGENPVNSNAFLALTRAAGLVFLNGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G L + L + +I H F
Sbjct: 188 LPIITLLLTVNLALGLLNRMAPQLSVFVIGFPLTLTVGILLMSLLMPLIAPFCEHLFGEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|162139705|ref|YP_877991.2| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
novyi NT]
Length = 610
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 105/239 (43%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +FL+ R+ S I + L P V++ F + +++ + + + + +
Sbjct: 5 TYFLGVFLVSLRILSFIEVAQILFPKGTPKVVKVMFGVILGFMIITGIDYSY-VNDINSN 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++E+ G + G + + +++ G+ + +G + + + + T +
Sbjct: 64 LMIIMYAIIEISTGVILGFITNICFSCIRYAGAFMDLQVGFAMMSMFDPNANSNTTLIER 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L+ ++D + + LV+S+ + IGQ + +N+ F + +R++
Sbjct: 124 MLYWFSLIVFIIVDGPNMLIKILVESFKVVHIGQFILNQQSAMHVINVFIKYFQLGIRIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + I+ ++++GL+ K VPQ+ + + P I LG L L + +I +F
Sbjct: 184 IPIVLIIILTDLTMGLVAKSVPQLNVMILGMPVKIVLGLGVLSLCLPVIFNIIGSAFDN 242
>gi|28211317|ref|NP_782261.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88]
gi|28203757|gb|AAO36198.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88]
Length = 539
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 108/239 (45%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ R+ + P P +++ F + S +L+P + D + N N
Sbjct: 8 AFFTAVIMVFLRLIGFFTVTPVFFPKGTPAILKVAFTLILSYMLVPGI-DYSQISNINNT 66
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ E+ G G + ++ + ++ G+ + +G ++ + + + S T +
Sbjct: 67 MVFITNCSSEIITGLALGFMTQLCFMAIRLGGNYMDIQVGFSMVSMLDPNTSSNSTLIER 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ GL+ +++D HH + L+ S+ + IG+ + S + + F++ L+++
Sbjct: 127 LLYWTGLILFFMVDGHHMLITQLIDSFNAVTIGRFILNQETASIIIEVFIQFFIMGLKIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + I+ +++GL+ + VPQ+ + + P I +G L L++ II + F
Sbjct: 187 IPIVLIIIIAELTLGLVGRAVPQLNVMILGLPLKIIVGLATLILAMPIIFKLIATGFSN 245
>gi|311279108|ref|YP_003941339.1| flagellar biosynthetic protein FliR [Enterobacter cloacae SCF1]
gi|308748303|gb|ADO48055.1| flagellar biosynthetic protein FliR [Enterobacter cloacae SCF1]
Length = 264
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + + P LS +P +V+L + ++ P L T +
Sbjct: 11 HWLSLYFWPLLRVLALVSTAPILSEKTVPKRVKLGLGFIITAIVAPTLPPT---DVTLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + ++ +G G +++ ++ G +I +GL+ T + S +L+ L
Sbjct: 68 PNALWLAIQQILIGIALGFTMQLAFAAIRTAGEIIGLQMGLSFATFVDPSSNLSMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ +L V + H + LV ++ T+PIG GN F + F+ L L+
Sbjct: 128 IMDMLAMLLFLVFNGHLWLISLLVDTFHTLPIGGLPLNGNAFLALSRAGGLIFLNGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN++ PQ+ ++ I P + +G + + + +I H F
Sbjct: 188 LPVITLLLTINLALGMLNRMAPQLSVFVIGFPITLTVGLILMSALMPLIAPFCEHLFSEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|91776318|ref|YP_546074.1| flagellar biosynthetic protein FliR [Methylobacillus flagellatus
KT]
gi|91710305|gb|ABE50233.1| flagellar biosynthetic protein FliR [Methylobacillus flagellatus
KT]
Length = 266
Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
++ + +L + R+ + I + P + +P V+L + ++ ++P + D + F
Sbjct: 10 QVWVATLMWPLTRILAFIAVAPLFNHRALPNNVKLGLGLVLTVAVMPSIPDIPPVSVFSM 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
++ +G G +R+ ++ G +GL T +
Sbjct: 70 NGLLIL--CQQVIIGAAMGFSLRIIFSAVELAGHTAGMTMGLGFAMFYDPQTQGQSTSIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ +L ID H V L +S+ + P+ E NFG F L +
Sbjct: 128 QFLVVLSMLLFLSIDGHLVVISTLAESFSSFPVTAEPNFGLDPYKIALWGGKIFSAGLLM 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P + ++ N+++G+L + PQ+ ++ I P I LG L L L++ ++
Sbjct: 188 SLPIIAALLLANLALGVLTRAAPQLNLFGIGFPITISLGFLLLMLALPYMMQPVQRLMHE 247
Query: 246 G 246
Sbjct: 248 S 248
>gi|218662875|ref|ZP_03518805.1| flagellar biosynthesis protein FliR [Rhizobium etli IE4771]
Length = 250
Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 100/247 (40%), Positives = 151/247 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+
Sbjct: 1 MISDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + +
Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDSP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L++ I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T
Sbjct: 121 ETSLSAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G +S+ +V QF
Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLFYVSVAALVSQFG 240
Query: 241 HSFLYGF 247
+F +
Sbjct: 241 QAFSSIY 247
>gi|320085401|emb|CBY95182.1| Flagellar biosynthetic protein fliR [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 290
Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 38 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 94
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 95 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 154
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 155 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 214
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 215 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 274
>gi|86356338|ref|YP_468230.1| flagellar biosynthesis protein FliR [Rhizobium etli CFN 42]
gi|86280440|gb|ABC89503.1| flagellar byosinthesis transmembrane protein [Rhizobium etli CFN
42]
Length = 250
Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 101/247 (40%), Positives = 153/247 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C+++LPG S + +P Q+R+ A+A SI ++P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLVLPGFSSARVPEQLRVFIALALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
A Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + +
Sbjct: 61 AVHTGSATYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDSP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L + I G++ L+++DFHH VF AL+ SY T+P G SF + L+ T
Sbjct: 121 ETSLTAFITFAGIMILFIMDFHHIVFRALIDSYTTMPFGGLTQMRATLISFTDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G +S+ +V QF
Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLFYVSVAALVSQFG 240
Query: 241 HSFLYGF 247
+F +
Sbjct: 241 QAFSSIY 247
>gi|218681681|ref|ZP_03529482.1| flagellar biosynthesis protein FliR [Rhizobium etli CIAT 894]
Length = 250
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 103/243 (42%), Positives = 153/243 (62%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C+++LPG S + +P Q+R+ A A SI ++P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLVLPGFSSARVPEQLRVFIAGALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ E +G ++GLL R+YTLG+QF ++++T +G S I +
Sbjct: 61 AVHTGSPTYIGLIFSESLVGVMYGLLARIYTLGMQFAATILATMVGYTQPGSADIIEDTP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E+ L+ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T
Sbjct: 121 ESSLSGFITFAGIMILFMMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRL+SPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G + SI +V QFS
Sbjct: 181 IMLRLASPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLIYFSIAAMVSQFS 240
Query: 241 HSF 243
SF
Sbjct: 241 QSF 243
>gi|241203132|ref|YP_002974228.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857022|gb|ACS54689.1| type III secretion system inner membrane R protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 250
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 103/243 (42%), Positives = 150/243 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPDQLRVFIAGALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S I +
Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADILEDTP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L+ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T
Sbjct: 121 ETSLSGFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G + SI +V QF
Sbjct: 181 IMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLIYFSIAAMVSQFG 240
Query: 241 HSF 243
SF
Sbjct: 241 QSF 243
>gi|125973004|ref|YP_001036914.1| flagellar biosynthesis protein FliR [Clostridium thermocellum ATCC
27405]
gi|256004801|ref|ZP_05429776.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM
2360]
gi|281417215|ref|ZP_06248235.1| flagellar biosynthetic protein FliR [Clostridium thermocellum JW20]
gi|125713229|gb|ABN51721.1| type III secretion system inner membrane R protein [Clostridium
thermocellum ATCC 27405]
gi|255991251|gb|EEU01358.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM
2360]
gi|281408617|gb|EFB38875.1| flagellar biosynthetic protein FliR [Clostridium thermocellum JW20]
gi|316940760|gb|ADU74794.1| flagellar biosynthetic protein FliR [Clostridium thermocellum DSM
1313]
Length = 261
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 102/232 (43%), Gaps = 2/232 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI R+ ++ P IP ++ F+ +++L+ + + F N Y
Sbjct: 15 FMLIFVRMTGLFVIAPIFGSRNIPTYCKIGFSFMTALILVNTI--KVQELYFSNIYEYFI 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV+ E +G G + + + G I IG + + +S + ++ ++
Sbjct: 73 LVLKEFLVGITLGYVAYMIFTAIYVAGQFIDMQIGFGVVNVIDPLNSTQVSITSNFYFLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L + H+ + AL SY IP+G + ++ + V + F+I ++S+P
Sbjct: 133 CMLVFLICRGHYILIRALFASYNYIPVGTGVFGEDMVNDIVRVFGNIFLIAFKISAPITI 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ +++G+++K VPQ+ ++ + P I LG + ++I + + +
Sbjct: 193 SIMISEVALGIVSKTVPQLNVFMVGMPLKIILGLAVMVITIPMFLNLVENLI 244
>gi|254433171|ref|ZP_05046679.1| flagellar biosynthetic protein FliR [Nitrosococcus oceani AFC27]
gi|207089504|gb|EDZ66775.1| flagellar biosynthetic protein FliR [Nitrosococcus oceani AFC27]
Length = 262
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + CR+G+ +M +P +P+++RL A+A ++V+ P + T V
Sbjct: 10 QLISAYLWPFCRIGALLMAMPLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LVM + +G L++++ G +++T +GL + M + +A + ++
Sbjct: 70 G---LLVMQQFLIGFAMALVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQ 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L ++ L ++ H V L +S+ +P+G E F + ++
Sbjct: 127 LYTVLITLVFLGLNGHLVVIQVLAESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N++ G++++ PQ+ + I P + LG L ++ +
Sbjct: 187 LPAIGALSLVNLTFGVMSRAAPQLNPFSIGFPLTLILGFWVLLFTLPNAPSHLVNLTDTA 246
Query: 247 F 247
Sbjct: 247 L 247
>gi|332284030|ref|YP_004415941.1| flagellar biosynthetic protein FliR [Pusillimonas sp. T7-7]
gi|330427983|gb|AEC19317.1| flagellar biosynthetic protein FliR [Pusillimonas sp. T7-7]
Length = 262
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 99/241 (41%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M + R+ + I P L S IP++ ++ FA ++ + P L D+
Sbjct: 11 GWMNAFLWPFFRILALIGAAPLLGESSIPIRAKVGFAALVTVAIAPALDPMPDIPTASFA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L ++ +G GL++R+ +Q G I +GL+ + + L
Sbjct: 71 GLWIGL--QQVLIGMALGLVMRIVFAAVQTAGEFIGLQMGLSFASFFDPATGANTAVLAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ L ++ H + +++S+ +P+ N + + + L+
Sbjct: 129 IMNVVATLLFLALNGHLMMLAGIMRSFDVLPVRVGGLDPNGWGVLFEWSSEVMVSGMMLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ Q+ ++ + P + G + L + + S+ F G
Sbjct: 189 LPLIIVLLTINLALGILNRTAQQLSVFAVGFPISLMTGLVLLAVVLPQTGPFLSNLFQEG 248
Query: 247 F 247
+
Sbjct: 249 Y 249
>gi|190890390|ref|YP_001976932.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
gi|190695669|gb|ACE89754.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
Length = 250
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 102/243 (41%), Positives = 149/243 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI L+P LWDT+
Sbjct: 1 MIADPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIALMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + +
Sbjct: 61 AVHTGAGTYIGLIFSESLVGLMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDAP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L+ I G++ L+++DFHH VF ALV SY T+P G SF + L+ T
Sbjct: 121 ETSLSGFITFAGIMILFIMDFHHIVFRALVDSYTTMPFGGVTQMRATLISFTDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G +S+ +V QF
Sbjct: 181 IMLRLSSPFLIYGMIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLFYVSVAALVSQFG 240
Query: 241 HSF 243
+F
Sbjct: 241 QAF 243
>gi|227820883|ref|YP_002824853.1| flagellar biosynthesis protein FliR [Sinorhizobium fredii NGR234]
gi|227339882|gb|ACP24100.1| flagellar biosynthesis protein FliR [Sinorhizobium fredii NGR234]
Length = 250
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 101/243 (41%), Positives = 149/243 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M PE +++LF CR+G CIM++PG S + +PMQVRL A+A S+ +LP +W I
Sbjct: 1 MITDPEGTVLALFAAFCRIGGCIMIMPGFSTARVPMQVRLFIAVALSMAILPIMWTDIYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q Y L+ E +G V GL+ R Y LGLQF G+ I+ IG N + + + A
Sbjct: 61 QVAGKGHTYIYLIATESVIGAVIGLVARYYVLGLQFAGTAITMLIGFNPPPATDVLEETA 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E L S+I GL+ L+++DFHH +F A+ +SY +PIG + + + N L TF+
Sbjct: 121 ENQLTSMISFAGLMLLFMLDFHHVIFEAIAQSYRVMPIGIGFDPQGMLITLTNSLGQTFL 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRL+SPF+ + ++FN++IG++N+L PQ+P+YFIS PYLI G L L I ++ F+
Sbjct: 181 IMLRLASPFVIYGLLFNVAIGMVNRLAPQVPVYFISQPYLILGGLFLLYLGIAAMLRLFA 240
Query: 241 HSF 243
F
Sbjct: 241 DGF 243
>gi|30248475|ref|NP_840545.1| hypothetical protein NE0459 [Nitrosomonas europaea ATCC 19718]
gi|30138361|emb|CAD84370.1| Bacterial export protein, family 1 [Nitrosomonas europaea ATCC
19718]
Length = 265
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +L + R+ + + P L S IP Q +L A+ +I++ P L +
Sbjct: 12 WLSTLIWPLARILALLASTPLLGSSSIPTQTKLGLAVLLAILIAPLLPPLPQIDP--GSG 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++M ++ +G G +R+ ++ G + +GL T S +
Sbjct: 70 VGLIVLMQQIIIGLAMGFSMRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQVQLVGRF 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
G++ L ID H QV L S+ T+PIG E F++ VN FM+ L LS
Sbjct: 130 YGLLATLTFLAIDGHLQVIAILAHSFTTLPIGAEGMSTTSFTALVNWGIKIFMLGLHLSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P L ++ N+++G+L + PQ+ I+ + P +G+G L + ++ + F F
Sbjct: 190 PVLTALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPLLNQLFQESF 249
>gi|90411035|ref|ZP_01219049.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
gi|90328248|gb|EAS44559.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
Length = 260
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 100/240 (41%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M + ++ ++RL + + ++P L ++
Sbjct: 11 WLANYFWPFTRISSMMMTMTFFGARFVSPRIRLYLGLTVTFAVMPSLPAVPANIELLSLQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G GL+ + T G ++ L + + ++ L L
Sbjct: 71 GF-LITAQQIVIGVSIGLVTQFVTQTFVLVGQILGMQSSLGFASMVDPANGQNTPVLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ D H ++ +V S+ T+PIGQE+ + + F L ++
Sbjct: 130 YLFLAIMLFLATDGHLEMLNVIVLSFKTLPIGQEMFRPDDYYQLAGWFGHMFKGALNMAL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N+S G++ + PQ+ I+ + + + LG L + ++ Q+ H++ +GF
Sbjct: 190 AGVIALLTVNLSFGVMTRAAPQLNIFALGFSFALLLGLLISWYLVMGMLPQYQHAWDFGF 249
>gi|149377873|ref|ZP_01895602.1| Flagellar biosynthesis pathway, component FliR [Marinobacter
algicola DG893]
gi|149357815|gb|EDM46308.1| Flagellar biosynthesis pathway, component FliR [Marinobacter
algicola DG893]
Length = 260
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 98/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ S +M++P + +P +VRL A+ +I+++P + + F
Sbjct: 12 QWVGQHLWPLFRLVSFMMVIPFIGTQLVPARVRLGLALIITILVVPMIPPVPQVDAFSAD 71
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G G + G +I+ +GL + + ++ ++ L
Sbjct: 72 G--VVITLQQILIGVGMGFALTALFQLFVVAGQMIAMQMGLGFASMVDPANGVSVPVLAQ 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L ++ H F ++S+ T+PIG E + + F+ + L+
Sbjct: 130 IYTITITLLYLAMNGHLVAFEVFIESFRTMPIGLEGLGQAGVWQLAHRISWIFVSAVLLA 189
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NIS G++ + PQ+ I+ + P + G + + + F
Sbjct: 190 LPAVTAVFIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFEQYTRET 249
Query: 247 F 247
F
Sbjct: 250 F 250
>gi|325291970|ref|YP_004277834.1| flagellar biosynthesis protein FliR [Agrobacterium sp. H13-3]
gi|325059823|gb|ADY63514.1| flagellar biosynthesis protein FliR [Agrobacterium sp. H13-3]
Length = 251
Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 99/248 (39%), Positives = 156/248 (62%), Gaps = 1/248 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59
M P+ +++LFL +CR+G+C M +PG S S I Q+R+ +A S+ LLP LWDTI
Sbjct: 1 MITDPQGTIIALFLAICRIGACFMTMPGFSSSRISPQIRILLCVAVSMALLPVLWDTIYP 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ ++ L+ E+ +G ++GL+ R YTLG QFTG++I +IGL+ + +
Sbjct: 61 KVSGASQGAVVGLIFTEIVIGAMYGLIARFYTLGFQFTGALIGASIGLSAPGGADAVEDV 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
E +++ I GL+ L+++DFHH V ALV SY T P+G ++ + + + L+ +F
Sbjct: 121 QENQISNFITFGGLMVLFILDFHHIVLRALVDSYATTPVGALISGQKMLITLTDTLRASF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
IMLRL+SPF+ + ++FN+++GL+NKL PQIP+YFISTP+++ G L LSI ++ QF
Sbjct: 181 SIMLRLASPFVIYGLMFNVAVGLINKLAPQIPVYFISTPFVLAGGIFMLYLSIAALIRQF 240
Query: 240 SHSFLYGF 247
F F
Sbjct: 241 VDGFGPVF 248
>gi|311695201|gb|ADP98074.1| flagellar biosynthesis protein FliR [marine bacterium HP15]
Length = 261
Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ S +M++P +P ++RL A+ +I++ P + ++
Sbjct: 13 QWVGQHLWPLFRLASFLMVIPIFGTQLVPARIRLGLALLMTILIAPMIPPVPQVEALSAD 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G G + G +I+ +GL + + ++ + L+
Sbjct: 73 A--VVITLQQILIGVGMGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVNVPVLSQ 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L ++ H F ++S+ T+PIG E + + F + L+
Sbjct: 131 IYTITITLLFLAMNGHLVAFEVFIESFRTLPIGMEGLGQTGIWELAHRISWMFASAMLLA 190
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ NIS G++ + PQ+ I+ + P + G + + + F
Sbjct: 191 LPAVTAVLIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFDQYARET 250
Query: 247 F 247
F
Sbjct: 251 F 251
>gi|260886651|ref|ZP_05897914.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC
35185]
gi|330839518|ref|YP_004414098.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC
35185]
gi|260863794|gb|EEX78294.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC
35185]
gi|329747282|gb|AEC00639.1| flagellar biosynthetic protein FliR [Selenomonas sputigena ATCC
35185]
Length = 260
Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 108/242 (44%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + L++ RV ++ P IP +R+ A+AFS VL P + + N
Sbjct: 8 QGHAAAYLLVLTRVTGIFVIAPFFGSLNIPAHIRVGTAVAFSFVLFPIVDSYGPVSAPDN 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
Y+ ELF+G + G + V + F G V+ +G + M + +
Sbjct: 68 VFLYAAAAAGELFVGWLIGFVAYVTFSAIHFAGKVMDMQVGFAMVNVMDPTSGQQIPLIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
S + + ++ V++ HH + AL +S+ ++P+ N+ VN++ F+ ++L
Sbjct: 128 SFLYNLAIIVFLVVNGHHMLIAALFESFQSVPMMGLSPSPNLAGFVVNLVNGVFVTGMKL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F ++ N+ +G+L + +PQ+ I+ + P I +G L + + V F
Sbjct: 188 AMPVTFSILLTNVGLGILARTMPQLNIFVVGLPLQIVIGMFVLSILMPFYVLFLDVLFNE 247
Query: 246 GF 247
+
Sbjct: 248 TY 249
>gi|116250508|ref|YP_766346.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv.
viciae 3841]
gi|115255156|emb|CAK06230.1| putative flagellar biosynthetic protein FliR [Rhizobium
leguminosarum bv. viciae 3841]
Length = 250
Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 103/243 (42%), Positives = 150/243 (61%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI ++P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPQQLRVFIAGALSIAVMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ E +G ++G+L R+YTLG+QF S+ + +G S I +
Sbjct: 61 AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAASITAMMVGYTQPGSADILEDTP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L++ I G++ L+++DFHH VF AL+ SY T+P G + SF + L+ T
Sbjct: 121 ETSLSAFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTY 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ G + SI +V QF
Sbjct: 181 IMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLLMGGLFLIYFSIAAMVSQFG 240
Query: 241 HSF 243
SF
Sbjct: 241 QSF 243
>gi|94314222|ref|YP_587431.1| flagellar biosynthetic protein FliR [Cupriavidus metallidurans
CH34]
gi|93358074|gb|ABF12162.1| flagellar biosynthetic protein FliR [Cupriavidus metallidurans
CH34]
Length = 261
Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ I P LS S IP ++++ A A SI++ P + + + +
Sbjct: 11 GWIATFLWPMFRMLGLISSAPLLSESTIPRRLKILLAAALSIIISPTIGNIPTVPVYSLD 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+V+ E+ +G G +R+ +Q G VI +GL+ + + L+
Sbjct: 71 G--LLIVLNEVGIGLSMGFAMRLVFAAVQMAGEVIGLQMGLSFASFYDRAAGGQTMVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L +D H + AL+ S+ +PI G+ + F LS
Sbjct: 129 FLNMVAMLLFLALDGHLMMLAALIDSFQGLPISGVPLSGHGWGVLARAGSMIFSAGTLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ PQ+ I+ + P + G L L L + + H G
Sbjct: 189 LPMIAALLTMNLAMGILNRASPQLSIFAVGFPVTLLGGMLVLALVMPHMGAYVQHLIESG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|304311112|ref|YP_003810710.1| Flagellar biosynthesis protein FliR [gamma proteobacterium HdN1]
gi|301796845|emb|CBL45057.1| Flagellar biosynthesis protein FliR [gamma proteobacterium HdN1]
Length = 259
Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 109/240 (45%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F CR+G+ + +P + +P ++R+ A++ ++V+ P L ++
Sbjct: 10 TWIAEYFWPFCRIGALFLAIPLIGTRSVPQRIRIVLALSVTVVVAPLLGKMPAVELLSVD 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ V+ +L +G + G ++++ G +++ GL + + ++ L+ ++
Sbjct: 70 SWLI--VIQQLLIGLLLGFVVQLLFQLFIVGGQMVAMQNGLGFSSLVDPTNGLSVAVISQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + L + ++ H + +V S+ +P+ + + + F + LS
Sbjct: 128 IYLMTVNLVFFTLNGHLALIRFIVDSFQYLPVSTSGIAPDGYYMVIMHAVWMFQNAVLLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N+S G+++++ PQ+ I + P + G + L +++ ++ + +F
Sbjct: 188 LPAVTALLVTNLSFGVMSRVAPQLNIMSVGFPMNMVAGVIVLWVTLPSLLPLYERTFDET 247
>gi|295678049|ref|YP_003606573.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1002]
gi|295437892|gb|ADG17062.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1002]
Length = 260
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 107/240 (44%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ + I P L + +P +V++ A +I++ P + + F
Sbjct: 11 VWLTAFLWPFARIAALIATAPVLGNTSLPSRVKIGLAAFTTIIVAPTIGALPQVTVFSAD 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + +G G+ +++ + TG I +GL T + + ++
Sbjct: 71 GVWIL--ANQFLIGIALGVTMQIVFQAIDATGYFIGLGMGLGFATFFDQQATGSGVVISR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +LA +D H Q+ ALV ++ ++P+ L + + + N + F L LS
Sbjct: 129 YMTTIAMLAFLAVDGHLQMIAALVTTFQSVPVSANLLAPHGWQTLANWGSSIFSAGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P + +G L + L + ++ F F G
Sbjct: 189 LPVVVALLIANLALGILNRAAPQIGVFQIGFPLTMLVGLLLVQLMLPNMIPFFVRLFDSG 248
>gi|152980679|ref|YP_001353119.1| FliR component of the flagellar biosynthesis pathway
[Janthinobacterium sp. Marseille]
gi|151280756|gb|ABR89166.1| FliR component of the flagellar biosynthesis pathway
[Janthinobacterium sp. Marseille]
Length = 263
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ I + P +P +V++ + ++++ P + L +
Sbjct: 11 TWIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPAMPALDPMSLQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+L +G G +R+ G++ G +I +GL + + ++
Sbjct: 71 GLLIL--AQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTRARSSAISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ L+ + H V L +S+ +PI V F ++LS
Sbjct: 129 FLALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRIFSAGVQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ NI++G+L + PQ+ I+ I P IG+G + + + + ++ + G
Sbjct: 189 LPIVAALLITNIALGILTRAAPQLNIFGIGFPITIGVGFIMIGIVLPYLMNPIINLMQEG 248
>gi|237653574|ref|YP_002889888.1| flagellar biosynthetic protein FliR [Thauera sp. MZ1T]
gi|237624821|gb|ACR01511.1| flagellar biosynthetic protein FliR [Thauera sp. MZ1T]
Length = 265
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 95/242 (39%), Gaps = 2/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + +L + R+ P S + +++RL + ++ +LP L +
Sbjct: 10 DAWLAALMFPLGRLLGLFASAPVFSNRGVSVRIRLAIGLGVAMAVLPVLPPMPQVPP--G 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ +G G ++R+ + G++I +GL+ L+
Sbjct: 68 GGLGLAIFAQQILIGIAIGFVMRIVFAAVDMAGALIGMQMGLSFAVFFDPDAGGQTAVLS 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L ID H + LV+S+ +P+ + ++ T F L L
Sbjct: 128 DFLNLLATLIFLAIDGHLLMIDLLVRSFEWLPVATDAVDAGGWAFLARSGITVFSAGLLL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P + +V NI++G+L + PQ+ ++ + P + G + + L + F
Sbjct: 188 SLPVIAVLLVANIALGVLTRAAPQLNLFAVGFPITLTAGFIGVLLIMSNFAPVLQSLFER 247
Query: 246 GF 247
+
Sbjct: 248 SY 249
>gi|220929450|ref|YP_002506359.1| flagellar biosynthesis protein FliR [Clostridium cellulolyticum
H10]
gi|219999778|gb|ACL76379.1| flagellar biosynthetic protein FliR [Clostridium cellulolyticum
H10]
Length = 265
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 101/235 (42%), Gaps = 1/235 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI R+ + P IP+ ++ FA + +L + + N N ++
Sbjct: 15 FLLIFVRMTGLFVTAPIFGRRNIPVYYKVGFAF-ITAILASSVIRVDHIINTDNFLIFAL 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
++ E +G + G + + G +I IG + ++ +L I+
Sbjct: 74 YILKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPISNIQIPVTANLYFIL 133
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
++ + + HH + AL +S+ IP+G + + + ++Q F + ++++P +
Sbjct: 134 SMIIFLLTNGHHMLIRALYESFQIIPLGSAVIGPKLKDDVIGIMQGVFSMGFKIAAPIVA 193
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ +G+++K +PQ+ ++ + P I +G L + ++I VY +
Sbjct: 194 AIFITDVVLGIISKTIPQMNVFILGMPLKIFVGILIILITIPAFVYIVTVITDDM 248
>gi|54308127|ref|YP_129147.1| flagellar biosynthesis protein FliR [Photobacterium profundum SS9]
gi|46912553|emb|CAG19345.1| putative polar flagellar assembly protein FliR [Photobacterium
profundum SS9]
Length = 260
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 100/240 (41%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M + ++ ++RL + + ++P L ++
Sbjct: 11 WLANYFWPFTRISSMMMTMTFFGARFVSPKIRLYLGLTVTFAVMPALPAVPANIELLSLQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G GL+ + T G ++ L + + ++ L L
Sbjct: 71 GF-LITAQQIVIGVSIGLVTQFVTQTFVLVGQILGMQSSLGFASMVDPANGQNTPVLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ D H ++ +V S+ T+PIGQE+ + + F L ++
Sbjct: 130 YLFLAIMLFLATDGHLEMLNIIVLSFKTLPIGQEMFRPDDYYQLAGWFGHMFKGALNMAL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N+S G++ + PQ+ I+ + + + LG L + ++ Q+ H++ +GF
Sbjct: 190 AGVIALLTVNLSFGVMTRAAPQLNIFALGFSFALLLGLLISWYLVMGMLPQYQHAWDFGF 249
>gi|330814978|ref|YP_004358683.1| Flagellar biosynthetic protein FliR [Burkholderia gladioli BSR3]
gi|327367371|gb|AEA58727.1| Flagellar biosynthetic protein FliR [Burkholderia gladioli BSR3]
Length = 259
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ + + P + + +P +V++ + SI + P L F
Sbjct: 11 VWLTAFLWPFVRILALVATAPLIGHASVPARVKIGVSALVSIAVAPALGPLPQATVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + + +G G +++ ++ G I +GL + L
Sbjct: 71 GIWILV--NQFLIGAALGFTMQIVFAVVEAAGDYIGLQMGLGFASFFDPHSG-NTPMLGR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ +LA D H Q+ ALV+S+ +PI L + F + L L+
Sbjct: 128 VLNAFAMLAFIAFDGHLQLIAALVQSFDIVPISSNLLRAAGWRIVAGAGINVFSMGLLLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P L+ +G L + L I ++ FSH F G
Sbjct: 188 LPVVAALLISNLALGILNRAAPQIGIFQVGFPVLMLVGLLLVQLMIPNLMPFFSHLFDDG 247
Query: 247 F 247
+
Sbjct: 248 Y 248
>gi|300113615|ref|YP_003760190.1| flagellar biosynthetic protein FliR [Nitrosococcus watsonii C-113]
gi|299539552|gb|ADJ27869.1| flagellar biosynthetic protein FliR [Nitrosococcus watsonii C-113]
Length = 262
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + CR+G+ +M +P +P+++RL A+A ++V+ P + T V
Sbjct: 10 QLISAYLWPFCRIGALLMAMPLFGSKVVPVRIRLMLALALTVVIAPVIPATSVAALSVEG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LVM + +G L++++ G +++T +GL + M + +A + ++
Sbjct: 70 G---LLVMQQFLIGLAMTLVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMISQ 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L I+ L ++ H V L +S+ +P+G E F + ++
Sbjct: 127 LYTILITLVFLGLNGHLVVIQVLAESFYILPLGVEGASLGSFWQLAGGGSWMLAGSVLIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N++ G++++ PQ+ + I P + LG L ++ +
Sbjct: 187 LPAIGALSLVNLTFGVMSRAAPQLNPFSIGFPLTLLLGFWVLLFTLPNAPSHLVNLTDTA 246
Query: 247 F 247
Sbjct: 247 L 247
>gi|170748649|ref|YP_001754909.1| flagellar biosynthetic protein FliR [Methylobacterium radiotolerans
JCM 2831]
gi|170655171|gb|ACB24226.1| flagellar biosynthetic protein FliR [Methylobacterium radiotolerans
JCM 2831]
Length = 253
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 60/241 (24%), Positives = 121/241 (50%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + I + + R+G+ IML+PG+ + ++RL FA+ ++VL P + +
Sbjct: 1 MNLLLPGIASAYLITFARIGTLIMLMPGIGEQTVSPRLRLAFALLTALVLFPTVRPLLGG 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
V L+ E +G V GL +R+ LQ G +IS +GL+ ++ S
Sbjct: 61 TEGVAGPRLIGLLFGETIIGLVLGLTVRMILAALQTAGVIISAQVGLSYAMTVDPSQGGQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + + + ++G+ ++ D HH + +SY +P +F + L F
Sbjct: 121 QVAIGNFLSLLGITLIFAADLHHLAIEGVARSYEVLPPDGVPSFSDALMLATKALARGFT 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +++S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G L L + +++ F
Sbjct: 181 LAVQISGPFIAFGILFNLGLGVLSRLMPQMQVFFLAVPASVLIGMLLLMGCLGVMMGVFL 240
Query: 241 H 241
Sbjct: 241 D 241
>gi|329901239|ref|ZP_08272764.1| Flagellar biosynthesis protein FliR [Oxalobacteraceae bacterium
IMCC9480]
gi|327549171|gb|EGF33763.1| Flagellar biosynthesis protein FliR [Oxalobacteraceae bacterium
IMCC9480]
Length = 258
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + R+ I + P + +P ++++ + ++++ P + L+ +
Sbjct: 11 ALITGFLWPLTRILGLIAVAPVFGNASVPRRIKVGLGILIAMIVAPLVQVPSGLEPMSMQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L +G G +R+ ++ G V S +GL T ++
Sbjct: 71 GLLILVQQ--LLIGIAMGFSMRIIFSAVEMAGEVASMTMGLGFATFFDPQSRGRSNAVSQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ +I L+ + H + LV S+ T+PI GNI V F L+L+
Sbjct: 129 FLSLIVLMVYLAANVHLALLSTLVDSFTTMPITVGPLAGNIAEQVVRWASRLFSAGLQLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+L + P + ++ I P + +G L L + + + F
Sbjct: 189 LPIVAALLITNVALGILTRAAPSLNLFGIGFPITLTIGFAMLGLVLPYLATPMAKLFEET 248
>gi|94500292|ref|ZP_01306825.1| flagellar biosynthesis protein [Oceanobacter sp. RED65]
gi|94427591|gb|EAT12568.1| flagellar biosynthesis protein [Oceanobacter sp. RED65]
Length = 262
Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 94/243 (38%), Gaps = 2/243 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ R M+LP + +VRL A SI++ P L +
Sbjct: 17 SSWVSRYLWPFFRFAGFFMVLPLFGTRLVTARVRLFLAFFTSILVTPLLPPMPVIDAVSV 76
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + ++ +G G ++ + G +I+ GL + + ++ + +
Sbjct: 77 QTMVI--IAQQILIGIALGFVVEILMQIFILCGQLIAMQTGLGMAMMVDPTNGVNVAVVA 134
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
I L ++ H L S+ TIP+G+ N+ S V + F + L
Sbjct: 135 QWFLIFANLLFITLNGHLVAIEILADSFFTIPVGEGTISTNVMWSIVELAHWMFSAAIVL 194
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + +V NI+ G++ +L PQ+ I+ + P + LG + L ++ +F
Sbjct: 195 ALPAITSMLVVNIAFGVMARLAPQLNIFAVGFPVTMLLGLIVLWIAFSGFGAEFGRLLTE 254
Query: 246 GFF 248
F+
Sbjct: 255 LFY 257
>gi|253688964|ref|YP_003018154.1| flagellar biosynthetic protein FliR [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755542|gb|ACT13618.1| flagellar biosynthetic protein FliR [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 261
Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + I P + I +V++ + ++++ P+L V
Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGVLITLLVAPYLPLNTTPIFSVAG- 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G GL +++ ++ G +I +GL T + +
Sbjct: 71 --IWLLIQQVLIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVIARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I+ +L D H + L S+ T+PI + F + F+ L L+
Sbjct: 129 LNILAILLFLTFDGHLWMISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++G+LN++ PQ+ I+ + P + +G + L L I +I H F F
Sbjct: 189 PIITLLLTINLALGMLNRVAPQLSIFVVGFPITLTVGIMTLGLLIPLIPPFAEHLFSEVF 248
>gi|325288791|ref|YP_004264972.1| flagellar biosynthetic protein FliR [Syntrophobotulus glycolicus
DSM 8271]
gi|324964192|gb|ADY54971.1| flagellar biosynthetic protein FliR [Syntrophobotulus glycolicus
DSM 8271]
Length = 259
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 2/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI CR +M+ P +P V+L AMA S+VL P + +Q V+
Sbjct: 11 LTLFLLIFCRWAGMVMIAPVFGARGVPNLVKLGLAMALSVVLYPTVLSMT-VQVPVDTLL 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y L++ E+ +G V GL+I + T +Q G +I IG L ++ + + + +
Sbjct: 70 YIGLIIKEVTVGLVIGLVINLLTSVMQTAGELIDYQIGFTLGNTIDPINGMQSPMTGNFL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + L I+ HH + A+VKSY IP+ + + ++ ++ + +++ P
Sbjct: 130 MVLTTMLLLAINAHHLIIAAMVKSYSYIPVNTGILPKG-MTFYIQIVGQVIALGAQIAMP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ ++ +GLL+K VPQ+ I+ + P I G L LSI + S+
Sbjct: 189 IFGALFLADVGVGLLSKTVPQLNIFSVIFPVKIIFGLTLLFLSIPYLGSTVSNL 242
>gi|74317630|ref|YP_315370.1| flagellar biosynthesis protein FliR [Thiobacillus denitrificans
ATCC 25259]
gi|74057125|gb|AAZ97565.1| flagellar biosynthesis protein FliR [Thiobacillus denitrificans
ATCC 25259]
Length = 262
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 106/241 (43%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ ++S + R+ +M+ P +P +V++ + +++ P L + +
Sbjct: 11 VWLISFIWPLTRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPPMPAV--GLGS 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +++ + +G G ++R+ ++ G +I +GL + + L
Sbjct: 69 WHGLFILVQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSAGQTLVLAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ +L + ++ H + LV+S+ +PI E F + T F + L+L+
Sbjct: 129 FFNMLAVLLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTIFSLGLQLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+L + PQ+ I+ I P +G+G + L +++ QF G
Sbjct: 189 LPLIAILLMTNLTLGILTRSAPQLNIFAIGFPITLGVGLIMLDVTLPYFAPQFEQLIASG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|90021815|ref|YP_527642.1| flagellar biosynthetic protein FliR [Saccharophagus degradans 2-40]
gi|89951415|gb|ABD81430.1| flagellar biosynthetic protein FliR [Saccharophagus degradans 2-40]
Length = 261
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ FL CR+G+ + +P L + +VRL A +++++P L + +
Sbjct: 14 LLQQYFLPFCRIGAMFLAMPILGSQLVSPRVRLGLAFIVTLMVVPMLGSIPKVSGLSVQT 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ LG G +V G +I+ +GL + + + T ++
Sbjct: 74 --FIYISQEILLGLAAGYCFQVAFQVFVLAGQLIAMKMGLGFASMNDPVNGVQTTAISQF 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L ++ H + LV+S+ T P G + N N+ F L ++
Sbjct: 132 YLMLVTLMFVSVNGHLVMINMLVESFVTFPPGGFIFSTNTMWKIANVGTWLFAAGLLMAL 191
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P L + NI+ G++++ PQ+ I+ I P+ + G L + L + F GF
Sbjct: 192 PVLTALLFINIAFGIMSRAAPQLNIFAIGFPFTLLCGLLMIWLGLVTFDSNFESVMDDGF 251
>gi|121533744|ref|ZP_01665571.1| flagellar biosynthetic protein FliR [Thermosinus carboxydivorans
Nor1]
gi|121307735|gb|EAX48650.1| flagellar biosynthetic protein FliR [Thermosinus carboxydivorans
Nor1]
Length = 260
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/246 (21%), Positives = 104/246 (42%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ + LI RV + P L IP+ + FA+ S +L P + +
Sbjct: 4 ITIMQSQLGFFLLIFTRVTGILTTAPILGSRNIPVYTKAGFALILSYILTPIVVQRSHII 63
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
Y LV+ EL +G + G + + +Q G ++ IG + +
Sbjct: 64 VPDQFGAYVFLVIGELLIGLILGYISSMIFYAVQMAGQLLDMQIGFGIVNIIDPQSGQQL 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ + I LL + + HH + AL S+ T+P+G + + +++ + +I
Sbjct: 124 PLIGNFKYIFSLLVFFATNGHHILLSALFTSFKTVPVGAAVFRPQLADLVIDITFSVLII 183
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L++S P L + +I++G+L +++PQ+ I+ + P I +G L L++ +
Sbjct: 184 ALKISLPILVAIFLTDIAMGILARIMPQMNIFIVGIPGKIIVGIFMLALTLPFYITLLEV 243
Query: 242 SFLYGF 247
F +
Sbjct: 244 GFSAMY 249
>gi|116694512|ref|YP_728723.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
gi|113529011|emb|CAJ95358.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
Length = 261
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 97/240 (40%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + R+ + I P S IP + ++ + ++V+ P + + +
Sbjct: 12 WLAAFLWPFFRILALIGTAPLFGESTIPRRAKIALSAMVAVVVSPTIAQLPVVPVYSFGG 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+++ E+ +G G +R+ +Q G +I +GL+ + + L+
Sbjct: 72 --LMIILNEVGIGLATGFAMRLVFATVQQAGEIIGLQMGLSFASFFDRAAGGQTMVLSRF 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +I +L +D H + ALV S+ +PIG + F L L+
Sbjct: 130 LNLIAMLLFLALDGHLLMLGALVDSFSGLPIGGTPLSAGGAMAVARAGGMVFSSGLLLAL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++G+LN+ PQ+ I+ + P + G L L L + + H G
Sbjct: 190 PMIAALLTLNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLMLVMPQMGTYMQHMIGAGL 249
>gi|313896132|ref|ZP_07829686.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 137
str. F0430]
gi|320529416|ref|ZP_08030504.1| flagellar biosynthetic protein FliR [Selenomonas artemidis F0399]
gi|312975557|gb|EFR41018.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 137
str. F0430]
gi|320138382|gb|EFW30276.1| flagellar biosynthetic protein FliR [Selenomonas artemidis F0399]
Length = 260
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 109/247 (44%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + L++ R+ ++ P IPM R+ A+A S+VL P +
Sbjct: 3 LYELLQGHIAAFLLMLTRISGIFLISPFFGSMNIPMFFRVGIALAMSVVLFPVVDGLGTP 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + V+ ELF+G + G + + + G V+ +G + + +
Sbjct: 63 ETPPSIIMFGAAVLGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAVVNVVDPTSGQQ 122
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ S + + ++ L V + HH + ALV+S+ +P+ ++ N T F+
Sbjct: 123 IPLIGSFLYNLAVIILLVTNGHHMLIAALVESFRAVPLAGLEANISLALIIANFTGTIFL 182
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
++++ P F ++ N+ +G+L++ +PQ+ I+ + P + +G L + + V
Sbjct: 183 TGMKIAMPITFAILLTNVGLGILSRTMPQMNIFVVGIPMQLMIGLFVLSMIMPFYVLFLD 242
Query: 241 HSFLYGF 247
F +
Sbjct: 243 VLFNEMY 249
>gi|89075525|ref|ZP_01161936.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
gi|89048797|gb|EAR54368.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
Length = 260
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 96/240 (40%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M + ++ ++RL A+A + +LP L ++ A
Sbjct: 11 WIANYFWPFTRISSMVMAMTFFGARFVSPKIRLYLALAITFAVLPVLPKVPQDIELLSLA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + +L +G GL+ + T G ++ L + + ++ L
Sbjct: 71 GFI-VTTQQLIIGVAMGLVTQFITQIFVLLGQILGMQSSLGFASMVDPANGQNTPVLGQF 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +L D H ++ A+V S+ T+PIG+ + + F + ++
Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVVSFKTLPIGEAMLQPKDYYQLAGWFGHMFKAGVNMAL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N+S G++ + PQ+ I+ + + + LG + I+ Q+ + G
Sbjct: 190 AGVIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLGILPQYEAIWQVGL 249
>gi|254785482|ref|YP_003072911.1| flagellar biosynthetic protein FliR [Teredinibacter turnerae T7901]
gi|237685643|gb|ACR12907.1| flagellar biosynthetic protein FliR [Teredinibacter turnerae T7901]
Length = 257
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 102/240 (42%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ FL R+G +++P + +VRL A +++++P L + +A
Sbjct: 11 FIQQYFLPFVRIGVMFLVMPVFGSRIVSPRVRLVLAFLITVLVVPLLPALPSVPPLSWQA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ V E+ LG G +V G ++ +GL + ++ + T L+
Sbjct: 71 LFF--VAQEVVLGAAVGFTFQVVFQMFVLGGQFMAMKMGLGFASMNDPTNGVQTTVLSQF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L ++ H + +V S+ T+ G+ + + F V + F L ++
Sbjct: 129 FLMLVTLMFVAVEGHLVLISLIVDSFHTLQPGRFVFASSNFYEIVKLGSWMFAAALLMAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + NI+ G++++ PQ+ I+ + P+ + G L + L + F + YGF
Sbjct: 189 PVITSLLFVNIAFGIMSRAAPQLNIFAVGFPFTLMCGLLLIWLGLTHFSEIFETAITYGF 248
>gi|86573910|gb|ABD08467.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris
HaA2]
Length = 283
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 70/234 (29%), Positives = 122/234 (52%), Gaps = 1/234 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ RVG+ +MLLP L S IP +++L A+ ++++LP + + +
Sbjct: 41 AAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQVD-MSSLTPL 99
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L++ E+ +G V G RV LQ GSVI+ +GL T++ + + + +
Sbjct: 100 LVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLT 159
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I+G+ L+ D HH V AL SY G+ LN G++ + +F I ++L++PF
Sbjct: 160 ILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAASFKIGMQLAAPF 219
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L F +VFNI +G+L +L+PQ+ +YF+ P I +G + + ++ F F
Sbjct: 220 LVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGTFLAYF 273
>gi|120554899|ref|YP_959250.1| flagellar biosynthesis protein FliR [Marinobacter aquaeolei VT8]
gi|120324748|gb|ABM19063.1| flagellar biosynthetic protein FliR [Marinobacter aquaeolei VT8]
Length = 261
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 99/241 (41%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ S +M++P +P +VRL A+ +I++ P + ++
Sbjct: 13 QWVGQHIWPLFRLASFLMVIPIFGTQLVPARVRLGLALLMTILIAPMIPPVPQVEALSAD 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G G + G +I+ +GL + + ++ + L
Sbjct: 73 A--VVITLQQILIGIGLGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVNVPVLAQ 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L V++ H F ++S+ T+PIG E + + + + F + L+
Sbjct: 131 IYTITITLLFLVMNGHLVAFEVFIESFYTLPIGLEGLGQDGVWALAHRISWMFASAMLLA 190
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ NIS G++ + PQ+ I+ + P + G + + + F
Sbjct: 191 LPAVTAVLIVNISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFDQYTRET 250
Query: 247 F 247
F
Sbjct: 251 F 251
>gi|303240270|ref|ZP_07326789.1| flagellar biosynthetic protein FliR [Acetivibrio cellulolyticus
CD2]
gi|302592180|gb|EFL61909.1| flagellar biosynthetic protein FliR [Acetivibrio cellulolyticus
CD2]
Length = 261
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 109/232 (46%), Gaps = 2/232 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI R+ ++ P S + IP +++ F+ +++L+ + + + N N ++
Sbjct: 15 FLLIFIRMAGLFVIAPIFSRANIPTYLKIGFSFMLALILVNTISNQNIVIN--NIYEFAA 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV+ E +G G + + G +I IG + + ++ + ++ I+
Sbjct: 73 LVIREFVVGITLGYVSYTIFNAIYIAGELIDMQIGFGVVNVIDPISNIQVSITSTFYFIL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L + + HH + AL SY +P+GQ + + S + + F+I ++++P L
Sbjct: 133 CMLVFILCNGHHILIRALFSSYEYVPLGQAVFGSGLQSRILEIFGGIFLIAFKIAAPMLT 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ ++++G+++K VPQ+ ++ + P I LG + L++ + +
Sbjct: 193 AILITDVALGVISKTVPQLNVFVVGMPLKIILGLAVMVLTMPLFISIVETLI 244
>gi|332524234|ref|ZP_08400460.1| flagellar biosynthetic protein FliR [Rubrivivax benzoatilyticus
JA2]
gi|332107569|gb|EGJ08793.1| flagellar biosynthetic protein FliR [Rubrivivax benzoatilyticus
JA2]
Length = 253
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 95/241 (39%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L R + +P L +P +VR+ A + P L + +
Sbjct: 11 GWITPLIWPFLRALALFTAMPVLGTRSVPTRVRIGLAGLIAFAAQPSLPAVEPVPLDSPQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A LV+ ++ +G G +R+ ++F G ++ +GLN T +
Sbjct: 71 A--FVLVVQQVVIGLSLGFAVRIVFAAVEFAGEIVGLQMGLNFAAFFDPIRGGTATATSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G VI+ H V ALV+S+ P+G E + F + ++
Sbjct: 129 FYGTTIAWLFIVINGHLLVIAALVQSFTAFPVGPEPFGFLKEARPHLWAAEIFSTGVWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L + NI +G ++++ PQ+ ++ + P +G+G + + L++ + F+ +
Sbjct: 189 LPLLAMLLFVNIVLGAVSRVAPQMNVFSVGFPITLGVGLVGILLTLPAMQGPFTVALERL 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|209522298|ref|ZP_03270925.1| flagellar biosynthetic protein FliR [Burkholderia sp. H160]
gi|209497274|gb|EDZ97502.1| flagellar biosynthetic protein FliR [Burkholderia sp. H160]
Length = 260
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 104/240 (43%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ + I P +P +V++ A +I++ P + + F
Sbjct: 11 VWLTAFLWPFARIAALIATAPIFGNMSLPSRVKIGLAAFATIIVAPTIGALPQVTVFSAA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + + +G G+ +++ + TG I +GL T + + ++
Sbjct: 71 GVWILV--NQFLIGIALGVTMQIVFQAIDATGYFIGLGMGLGFATFFDQQATGSGVVISR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L +D H Q+ ALV ++ ++P+ L + + + N + F L L+
Sbjct: 129 YMTTIATLVFLAVDGHLQMIAALVTTFQSVPVSANLLAPHGWQTLANWGGSIFSAGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P + +G L + L + ++ F F G
Sbjct: 189 LPVVVALLIANLALGILNRAAPQIGVFQIGFPLTMLVGLLLVQLMLPNMIPFFVRLFDSG 248
>gi|193222345|emb|CAL62040.2| Flagellar biosynthetic protein FliR [Herminiimonas arsenicoxydans]
Length = 263
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S + R+ I + P +P +V++ + ++++ P + +
Sbjct: 11 TWIASFLWPLTRILGLISVAPLFGNVSVPARVKISLGIMLALIIAPTVPALPAMDPMSPA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L +G G +R+ G++ G + +GL + + ++
Sbjct: 71 GLLILVQQ--LLIGLTMGFAMRIVFAGVEMAGEITGMTMGLGFASFFDPQTRARSSAISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ L+ + H V L +S+ +PI F V F ++LS
Sbjct: 129 FLALLILMIYLSTNLHLVVLSTLAQSFELLPISSNFVSTEGFFQVVKWGGRIFSAGVQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ NI++G+L + PQ+ I+ I P IG+G + + + + ++ F + G
Sbjct: 189 LPMVAALLMTNIALGILTRAAPQLNIFGIGFPITIGVGFIMIAIVLPYLMNPFINLMQEG 248
>gi|167617385|ref|ZP_02386016.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis
Bt4]
Length = 260
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + L P P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAVEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +PI +L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|90579939|ref|ZP_01235747.1| flagellar biosynthesis protein [Vibrio angustum S14]
gi|90438824|gb|EAS64007.1| flagellar biosynthesis protein [Vibrio angustum S14]
Length = 260
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 96/240 (40%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M + ++ ++RL A+A + +LP L ++ A
Sbjct: 11 WIANYFWPFTRISSMMMAMTFFGARFVSPKIRLYLALAITFAVLPVLPKVPQDIELLSLA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + +L +G GL+ + T G ++ L + + ++ L
Sbjct: 71 GFI-VTTQQLIIGVAMGLVTQFITQIFVLLGQILGMQSSLGFASMVDPANGQNTPVLGQF 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +L D H ++ A+V S+ T+PIG+ + + F + ++
Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVLSFKTLPIGEAMLQPKDYYQLAGWFGHMFKAGVNMAL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N+S G++ + PQ+ I+ + + + LG + IV Q+ + G
Sbjct: 190 AGVIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLGIVPQYEAIWQVGL 249
>gi|147678409|ref|YP_001212624.1| flagellar biosynthesis protein FliR [Pelotomaculum
thermopropionicum SI]
gi|146274506|dbj|BAF60255.1| flagellar biosynthesis pathway, component FliR [Pelotomaculum
thermopropionicum SI]
Length = 254
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 102/236 (43%), Gaps = 2/236 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + FL+ R + + P ++ +P ++ F +A + V+ P L ++ ++
Sbjct: 6 YLAAFFLVFLRTAAFMTAGPLYALRGVPPLLKAAFCLALAAVIFPVL--DLNEPLPLDAW 63
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y E LG + G + + + G +I IG ++ T L+
Sbjct: 64 GYGLAAARETGLGLLLGTAVTMILNSFRMAGQIIDFQIGYSMAALADPQYGTQNTLLSQY 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ L+ V+D H+ + LV+SY +P+ + G S + M +F I L++S+
Sbjct: 124 LYLLALVFFLVVDGHYSLIAGLVESYRLVPLNAAVFNGAAASVLLRMFSGSFAIALQVSA 183
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P L ++ ++++G L + PQ+ ++ P I G L L I ++
Sbjct: 184 PVLAVLVICDLTLGFLARTAPQLNVFLTGFPVKIAAGLLTLSFLIPLLGTVLRSLL 239
>gi|167579279|ref|ZP_02372153.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis
TXDOH]
Length = 260
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + L P P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +PI +L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|71277858|ref|YP_268256.1| flagellar biosynthesis protein FliR [Colwellia psychrerythraea 34H]
gi|71143598|gb|AAZ24071.1| flagellar biosynthetic protein FliR [Colwellia psychrerythraea 34H]
Length = 260
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M L R+ + IM + G S IP +V++ ++ +I ++P + +
Sbjct: 10 QYMADFVLPFSRISALIMTMIGFSSKTIPGRVKVFLCISITIAVMPAIPP--ASVTNLMS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G + G + + G +I+ GL + + + + +
Sbjct: 68 LNTAILLGQQMIIGVMLGFVTIMVVNTFTLAGQIIAMQSGLGFASLVDPASGMNVPAIGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L WV+D H +V S+ T+PI E + V F L L+
Sbjct: 128 FFLILSSLLFWVMDGHLAYLQFIVASFDTLPIPTEHLSSIKYREVVEWGGWMFATALSLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N S G++ + PQ+ I+ I P + G L + L+ F +
Sbjct: 188 LAPITAMLLINFSFGIMTRAAPQLNIFAIGFPITMMAGLLIMWLTFGNFFTHFELQWQRA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|167900655|ref|ZP_02487860.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei NCTC
13177]
Length = 260
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 104/240 (43%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + + P P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +P+ +L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFKLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|107021597|ref|YP_619924.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia AU
1054]
gi|116688059|ref|YP_833682.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia
HI2424]
gi|170731409|ref|YP_001763356.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia
MC0-3]
gi|254246636|ref|ZP_04939957.1| Flagellar biosynthesis protein FliR [Burkholderia cenocepacia
PC184]
gi|105891786|gb|ABF74951.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia AU
1054]
gi|116646148|gb|ABK06789.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia
HI2424]
gi|124871412|gb|EAY63128.1| Flagellar biosynthesis protein FliR [Burkholderia cenocepacia
PC184]
gi|169814651|gb|ACA89234.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia
MC0-3]
Length = 260
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P++V++ A ++V+ P L D+ F +
Sbjct: 11 GWLTAFLWPFVRMLALVATAPMVGHAAVPVRVKIGVAAFMALVVAPTLGAMPDVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + + +G G +++ ++ G I ++GL T S A +
Sbjct: 71 GIWILV--NQFLIGVAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPAMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA +D H QVF AL S+ ++P+ +L + + T F + L LS
Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALAASFQSLPVSADLLHAPGWRTLAAFGATVFEMGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI +Y I P + +G L + L I +V SH F G
Sbjct: 189 LPVVVALLIANLALGILNRAAPQIGMYQIGFPVTLIVGLLLVQLMIPNLVPFVSHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|120613019|ref|YP_972697.1| flagellar biosynthetic protein FliR [Acidovorax citrulli AAC00-1]
gi|120591483|gb|ABM34923.1| flagellar biosynthetic protein FliR [Acidovorax citrulli AAC00-1]
Length = 247
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 99/240 (41%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + M+ P SM IP++ ++ A ++ L D +
Sbjct: 2 AWLSPVLWPFLRVLAVFMVAPVFSMRSIPVRAKVGLAFLVAVCAQAVLPDQPVVSVNGRE 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A V ++ +G G +R+ ++ G V+ +GLN + S S + +
Sbjct: 62 A--LGAVAQQVAVGMSVGFAVRLVFTAVELAGEVVGLQMGLNFASFFDPSTSGQVSAVGR 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G + +L VI+ H V A+VKS+ + P+ + + F L ++
Sbjct: 120 FFGHMAMLLFVVINGHLMVLMAVVKSFDSFPVDGNFLQSIGQMRLHELGASLFSSALWIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++
Sbjct: 180 LPMIALLMFVNLALGVISRVAPQMNIYAVGFPVTLTVGLLGIAATLPMLEQPVLTLMQQS 239
>gi|126442304|ref|YP_001057089.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 668]
gi|126455304|ref|YP_001064319.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1106a]
gi|134281514|ref|ZP_01768222.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305]
gi|167717399|ref|ZP_02400635.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
DM98]
gi|167813517|ref|ZP_02445197.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 91]
gi|167843672|ref|ZP_02469180.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
B7210]
gi|167892143|ref|ZP_02479545.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
7894]
gi|167916914|ref|ZP_02504005.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
BCC215]
gi|237814427|ref|YP_002898878.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
MSHR346]
gi|242317745|ref|ZP_04816761.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1106b]
gi|254194718|ref|ZP_04901149.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei S13]
gi|254298635|ref|ZP_04966086.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
406e]
gi|126221797|gb|ABN85303.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 668]
gi|126228946|gb|ABN92486.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1106a]
gi|134247181|gb|EBA47267.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305]
gi|157808738|gb|EDO85908.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
406e]
gi|169651468|gb|EDS84161.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei S13]
gi|237506029|gb|ACQ98347.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
MSHR346]
gi|242140984|gb|EES27386.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1106b]
Length = 260
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 104/240 (43%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + + P P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +P+ +L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|94968668|ref|YP_590716.1| flagellar biosynthetic protein FliR [Candidatus Koribacter
versatilis Ellin345]
gi|94550718|gb|ABF40642.1| flagellar biosynthetic protein FliR [Candidatus Koribacter
versatilis Ellin345]
Length = 253
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 4/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E+ + S+ L+ R+ + ++ P S + IP +V+ + +I+L P + ++
Sbjct: 5 EVWVQSIVLVGTRIAALVLFAPFFSHAAIPPRVKGGLVVLLTILLYPSVIS----ATVLS 60
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ +V+ E F+G + GL + +QF G + +GL+L + + L+
Sbjct: 61 ASEVVGVVLHETFIGMLIGLSSVLVFEAVQFAGQCLGIEVGLSLVSVLDPQTQADSPVLS 120
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ I LL ++ HH + AL SY IP G G + F + +++
Sbjct: 121 VLLQTILLLLFLDLNVHHWLLRALADSYRLIPPGAGRLTGVVVQDLFQQAGMIFALGVQI 180
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++P L ++ +I L K PQ+P+ + P LG L + F +F
Sbjct: 181 AAPVLAATLLADIVFAFLAKASPQMPVLLLGMPVKFVLGLTTLWAGLRFWPVIFDRNFAL 240
Query: 246 GF 247
Sbjct: 241 AL 242
>gi|53717671|ref|YP_106657.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243]
gi|76810974|ref|YP_331662.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1710b]
gi|167908875|ref|ZP_02495966.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 112]
gi|254258615|ref|ZP_04949669.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1710a]
gi|52208085|emb|CAH34015.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243]
gi|76580427|gb|ABA49902.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1710b]
gi|254217304|gb|EET06688.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1710a]
Length = 260
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + + P P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPIPVATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +P+ L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|88800469|ref|ZP_01116033.1| flagellar biosynthesis protein [Reinekea sp. MED297]
gi|88776799|gb|EAR08010.1| flagellar biosynthesis protein [Reinekea sp. MED297]
Length = 263
Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 97/236 (41%), Gaps = 2/236 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ R+G+ +++P L IP++VRL A + + P L D ++ +
Sbjct: 17 WVSHFMWPFFRLGAFFVIVPVLGARLIPVRVRLGLAFVITYTIYPLLPDMPIIEAVDVQT 76
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ ++ +G G L+ V G IS +GL + + ++ ++ L+
Sbjct: 77 FMI--ILEQILIGTTLGFLVFVILQIFILAGQTISMQMGLGFASMVDPANGVSVAVLSQW 134
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L I+ H +V S+ T+P+GQ L + F L L+
Sbjct: 135 YQVLVTLVYLAINGHLLTLEVVVDSFYTLPVGQGLFTVESWRLLSEFGAWLFRASLMLAL 194
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + ++ N++ G++ + PQ+ ++ + P + G + + +S
Sbjct: 195 PAVTALLLVNLTFGVMTRAAPQLNVFALGFPITMLGGLVIVWVSYAAAAPLVRQYL 250
>gi|53724241|ref|YP_104208.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC
23344]
gi|67641566|ref|ZP_00440342.1| flagellar biosynthetic protein FliR [Burkholderia mallei GB8 horse
4]
gi|121598912|ref|YP_994548.1| flagellar biosynthetic protein FliR [Burkholderia mallei SAVP1]
gi|124384712|ref|YP_001027836.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC
10229]
gi|126448436|ref|YP_001082216.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC
10247]
gi|167001621|ref|ZP_02267415.1| flagellar biosynthetic protein FliR [Burkholderia mallei PRL-20]
gi|254175309|ref|ZP_04881970.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC
10399]
gi|254206623|ref|ZP_04912974.1| flagellar biosynthetic protein FliR [Burkholderia mallei JHU]
gi|254357356|ref|ZP_04973630.1| flagellar biosynthetic protein FliR [Burkholderia mallei
2002721280]
gi|52427664|gb|AAU48257.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC
23344]
gi|121227722|gb|ABM50240.1| flagellar biosynthetic protein FliR [Burkholderia mallei SAVP1]
gi|124292732|gb|ABN02001.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC
10229]
gi|126241306|gb|ABO04399.1| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC
10247]
gi|147752165|gb|EDK59231.1| flagellar biosynthetic protein FliR [Burkholderia mallei JHU]
gi|148026420|gb|EDK84505.1| flagellar biosynthetic protein FliR [Burkholderia mallei
2002721280]
gi|160696354|gb|EDP86324.1| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC
10399]
gi|238522519|gb|EEP85963.1| flagellar biosynthetic protein FliR [Burkholderia mallei GB8 horse
4]
gi|243062631|gb|EES44817.1| flagellar biosynthetic protein FliR [Burkholderia mallei PRL-20]
Length = 260
Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + + P P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +P+ L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|269103166|ref|ZP_06155863.1| flagellar biosynthesis protein FliR [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163064|gb|EEZ41560.1| flagellar biosynthesis protein FliR [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 260
Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 99/240 (41%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + R+ S +M + ++ ++RL A+ + ++P L ++
Sbjct: 11 WLANYMWAFIRISSMMMTMTFFGARFVSAKIRLYLALTITFAVVPVLPQVPQDIALLSLH 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G GL+ + T G +++ L + + ++ L L
Sbjct: 71 GFI-ITTQQIVIGAAIGLVTQFITQSFVLLGQILAMQSSLGFASMVDPANGQNTPVLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ + D H ++ +VKS+ T+PIG+ + G + F + L ++
Sbjct: 130 YLFLAIILFLMTDGHLEMLELIVKSFTTLPIGKAMFNGQDYYQLALWFGHMFKMALSMAL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N+S G++ + PQ+ I+ + + + +G + + ++ + + +G
Sbjct: 190 AGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLIGFVISWFVVRGLLPHYEQYWQFGL 249
>gi|83721282|ref|YP_440592.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis
E264]
gi|83655107|gb|ABC39170.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis
E264]
Length = 260
Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 103/240 (42%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + L P P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVALAPVTGHRATPVRVKIGLAGFMALVVAPTLPPMPAATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAVEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF LV S+ +PI +L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAVLVDSFRLVPISADLLRAAGWQTLVAFGSAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|217424090|ref|ZP_03455590.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 576]
gi|254184097|ref|ZP_04890688.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1655]
gi|184214629|gb|EDU11672.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1655]
gi|217393153|gb|EEC33175.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 576]
Length = 260
Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + + P S P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTSHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +P+ +L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|167822059|ref|ZP_02453530.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 9]
gi|226193326|ref|ZP_03788936.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
Pakistan 9]
gi|225934926|gb|EEH30903.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
Pakistan 9]
Length = 260
Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + + P P++V++ A ++V+ P L F +
Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPVATVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +P+ L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHVQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDTG 248
>gi|77463636|ref|YP_353140.1| flagellar protein FliR [Rhodobacter sphaeroides 2.4.1]
gi|126462468|ref|YP_001043582.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC
17029]
gi|332558492|ref|ZP_08412814.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides WS8N]
gi|3435111|gb|AAC32324.1| flagellar protein FliR [Rhodobacter sphaeroides]
gi|77388054|gb|ABA79239.1| Flagellar protein FliR [Rhodobacter sphaeroides 2.4.1]
gi|126104132|gb|ABN76810.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC
17029]
gi|332276204|gb|EGJ21519.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides WS8N]
Length = 269
Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 95/235 (40%), Gaps = 2/235 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
F+ R+G+ ++ P ++P+ VR+ + ++ +L + + + L
Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRIVATVILTLPVLGRV--ELPPPEELASLAAIPL 80
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+M E+ +G GL++ + G I++ GL + S + + G+
Sbjct: 81 MMQEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAGGQTPVVAQIFGLAL 140
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
+D H L++SY ++P G G + + F++ L++ P +
Sbjct: 141 TTVFLALDGHLTALDILLRSYESLPPGAPFAPGRFLEAGIGAGGRMFLLGLQIMMPVVAA 200
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
I+ N++IG++ + PQ+ ++ P + + L L+ + FS
Sbjct: 201 LILINVTIGIVTRSAPQLNVFSFGFPVTMSATLILLFLTAPGTMGAFSGLVEESL 255
>gi|302389678|ref|YP_003825499.1| flagellar biosynthetic protein FliR [Thermosediminibacter oceani
DSM 16646]
gi|302200306|gb|ADL07876.1| flagellar biosynthetic protein FliR [Thermosediminibacter oceani
DSM 16646]
Length = 254
Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 102/242 (42%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E I+++ L+ R+ +L P P+Q RL + +++L P + + N
Sbjct: 2 EFIIVNFLLVFFRILGFFILTPVFGRREFPVQGRLGVSALIAVILYPVVN---KIPLPDN 58
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L + E +G G + V + G +I +G + + + +
Sbjct: 59 LWDTVILFIRETAVGLSIGFITFVVFSAVYICGEIIDLQMGFGIVNVIDPQTNAQIPVMG 118
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I+ +L I+ HH + AL+KSY +P+G + + F +++
Sbjct: 119 NFFYILTILIFLSINGHHVLLNALMKSYDILPLGGAGLHDSFLEGMLKSFFEMFAAGVKM 178
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P + + + ++G++ + VPQ+ ++ + P+ I +G + L +++ + V F
Sbjct: 179 SIPVVAATFLADFALGVIARTVPQMNVFIVGLPFKIIIGFIALIIALPMYVLALDVLFSG 238
Query: 246 GF 247
+
Sbjct: 239 SY 240
>gi|253996311|ref|YP_003048375.1| flagellar biosynthetic protein FliR [Methylotenera mobilis JLW8]
gi|253982990|gb|ACT47848.1| flagellar biosynthetic protein FliR [Methylotenera mobilis JLW8]
Length = 263
Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 109/241 (45%), Gaps = 3/241 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ ++SL + R+ + I ++P LS + IP +V+L ++ +I+++P + + F
Sbjct: 10 QTWVISLLWPLTRILAVIAIVPILSHATIPRRVKLGLSVLLTIIIVPTIPPLPQFEAFSL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ +G G +R+ + G +I +GL + T LN
Sbjct: 70 EGLLILV--QQVIIGFAIGFSMRLVFAAVDLAGQLIGLTMGLGFAQFFDPQTNGQSTALN 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ +L +D H + A+ +S+ T+PIG + T F L L
Sbjct: 128 QLLVLLAMLIFLSLDGHLIIVSAMARSFITMPIGLGGAGIDAMQ-IALWGNTIFSAGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ N+++G+L + PQ+ ++ I P + +G + + LS+ ++
Sbjct: 187 ALPAVCALLITNMALGILTRTAPQLNLFGIGFPITLSMGFVVVALSLSSMLQPIIKFIEQ 246
Query: 246 G 246
G
Sbjct: 247 G 247
>gi|145598594|ref|YP_001162670.1| flagellar biosynthesis protein FliR [Yersinia pestis Pestoides F]
gi|108779103|gb|ABG13161.1| flagellar biosynthetic protein FliR [Yersinia pestis Antiqua]
gi|145210290|gb|ABP39697.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides F]
Length = 284
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + F + RV + I P LS I +V++ + + ++ P L + +
Sbjct: 34 SVWVSQYFWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSLP---PVNIPLF 90
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + + ++ +G G+ ++ ++ +G VI +GL+ T S L+
Sbjct: 91 SSAALWVAIQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLS 150
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ I+ L D H + L S+ T+PI GN F + FM L L
Sbjct: 151 RLLNILVTLLFLSFDGHLWLISLLADSFHTLPIQFAPLNGNGFLTLAQSGSMIFMNGLML 210
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F
Sbjct: 211 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFSE 270
Query: 246 GF 247
F
Sbjct: 271 FF 272
>gi|330961235|gb|EGH61495.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 258
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 114/242 (47%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + L + R+ S +M +P + + +P +VRL A+A ++V+ P L + +Q
Sbjct: 10 STWVAAFMLPLFRIISLLMTMPIIGTTLVPRRVRLYLAVAITVVVAPALPNMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SA--LLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLSMNGHLVVLEILVESFTTMPVGSGLLVNNFWE-LANGLGWVLSSGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + +G + L L+I I+ Q+
Sbjct: 187 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWLTIGDILNQYQPIASQ 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|220932507|ref|YP_002509415.1| flagellar biosynthetic protein FliR [Halothermothrix orenii H 168]
gi|219993817|gb|ACL70420.1| flagellar biosynthetic protein FliR [Halothermothrix orenii H 168]
Length = 259
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 1/237 (0%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
LI+ R ++ P P++V++ A+ + + LP + ++
Sbjct: 13 QFLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQT-VELPQQTVGIL 71
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
V+ E +G + G + + +Q G I +G + M + + I
Sbjct: 72 LDVIRESLIGFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAPVVGQFKNI 131
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+ +L I+ HH + L +S+ IP+ +F+ F+I +++ P +
Sbjct: 132 MAILVFLAINGHHLLLEGLYRSFQIIPLRGLTLGSEVFNLLFRTTGNMFIIAFKIALPVM 191
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ ++ G L + VPQ+ I+ I P I +G + L LS+ + VY F F +
Sbjct: 192 GTLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFFQDLFSEFY 248
>gi|319764503|ref|YP_004128440.1| flagellar biosynthetic protein flir [Alicycliphilus denitrificans
BC]
gi|317119064|gb|ADV01553.1| flagellar biosynthetic protein FliR [Alicycliphilus denitrificans
BC]
Length = 254
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + P SM IP++VR+ A ++ L +
Sbjct: 11 AWLSPVLWPFLRVLALFTSAPVFSMRAIPVRVRIGLAFLVALCAQAALPGQPVIDLNGRE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + V+ ++ +G G +R+ + ++ G VI +GLN + + + + +
Sbjct: 71 A--AGAVLQQVGVGLAIGFAVRLVFVAVELAGEVIGLQMGLNFASFFDPASNAQVSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G I +L V++ H V A+VKS+ + P+ + + F L ++
Sbjct: 129 FFGNIAMLLFVVVNGHLMVLMAVVKSFESFPVDGHFLQAVAQMRLHELGASVFASGLWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++
Sbjct: 189 LPMIALLLFVNLTLGVISRVAPQMNIYAVGFPVTLTVGMLGITATLPMLEQPMLTLLQQA 248
>gi|118581842|ref|YP_903092.1| flagellar biosynthetic protein FliR [Pelobacter propionicus DSM
2379]
gi|118504552|gb|ABL01035.1| flagellar biosynthetic protein FliR [Pelobacter propionicus DSM
2379]
Length = 264
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 109/243 (44%), Gaps = 1/243 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + ++ L++ R+ LP +P+Q+R+ MA S++ P L
Sbjct: 5 LPFPSQREIILFALVLGRMAGMFSALPVFGGKRLPLQIRVVAVMAMSLICFPLLNVNAP- 63
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + L + E+ +G + ++ ++F+G +I +G + M +
Sbjct: 64 NIPDDTISLALLALREVMIGITLSFVTQIIFSAVEFSGQIIGMQMGFTMAAIMDPTHGTQ 123
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
++ + ++ L + HH A+V S+ IP+G G I + F+
Sbjct: 124 SQVMSVMQSLLATLMFLCMSIHHLFIRAIVDSFHIIPLGVWHLNGEIITFLTRATADVFV 183
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +RL++P + ++ ++++G++ + PQ+ ++ IS P IG+G + L ++ + +
Sbjct: 184 LGVRLAAPVMVALLLTSVTLGIMARSFPQMNVFMISFPLNIGIGFIILGATLPMFFHVLE 243
Query: 241 HSF 243
SF
Sbjct: 244 VSF 246
>gi|330876031|gb|EGH10180.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330964681|gb|EGH64941.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 258
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 111/242 (45%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q
Sbjct: 10 STWVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SG--LLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLSMNGHLVVLEILVESFTTMPVGGGLLVNNFWE-LANGLGWALSSGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+
Sbjct: 187 VLPAVTALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQPIATQ 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|326319059|ref|YP_004236731.1| flagellar biosynthetic protein FliR [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375895|gb|ADX48164.1| flagellar biosynthetic protein FliR [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 256
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 99/240 (41%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + M+ P SM IP++ ++ A ++ L D +
Sbjct: 11 AWLSPVLWPFLRVLAVFMVAPVFSMRSIPVRAKIGLAFLVAVCAQAVLPDQPVISVNGRG 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A V ++ +G G +R+ ++ G V+ +GLN + S S + +
Sbjct: 71 A--LGAVAQQVAVGMSVGFAVRLVFSAVELAGEVVGLQMGLNFASFFDPSTSGQVSAVGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G + +L VI+ H V A+VKS+ + P+ ++ + F L ++
Sbjct: 129 FFGHMAMLLFVVINGHLMVLMAVVKSFDSFPVDGNFLQSIGQMRLHDLGASLFSSALWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + N+++G+++++ PQ+ IY + P + +G L + ++ ++
Sbjct: 189 LPMIALLTFVNLALGVISRVAPQMNIYAVGFPVTLTVGLLGIAATLPMLEQPVLTLMQQS 248
>gi|197120183|ref|YP_002140610.1| flagellar biogenesis protein FliR [Geobacter bemidjiensis Bem]
gi|197089543|gb|ACH40814.1| flagellar biogenesis protein FliR [Geobacter bemidjiensis Bem]
Length = 261
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 107/243 (44%), Gaps = 1/243 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ ++ ++ L L++ RV +P +P +V++ A ++++ P + + +
Sbjct: 5 LPLTSLADLIPLALVLARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKPHV-V 63
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
N + LV+ E +G G + + ++F G ++ T +G+++ +
Sbjct: 64 PNVSDSLGLMLLVLQETLIGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPATQNN 123
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ G + L + H +V SY +P+G G + V F+
Sbjct: 124 VPTMAIFQGALATLLFLAFNVHEYFIRGIVDSYRVVPLGAWHVSGGLLKFLVETSTGIFI 183
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I ++L++P + ++++G++ + P + ++ +S P IG+G + L +S+ + V
Sbjct: 184 IAIKLAAPVSVALLATSVALGIVARSFPAMNVFMVSMPLNIGIGFVILGISLPVFVRVLQ 243
Query: 241 HSF 243
SF
Sbjct: 244 GSF 246
>gi|326204608|ref|ZP_08194464.1| flagellar biosynthetic protein FliR [Clostridium papyrosolvens DSM
2782]
gi|325985175|gb|EGD46015.1| flagellar biosynthetic protein FliR [Clostridium papyrosolvens DSM
2782]
Length = 265
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 99/235 (42%), Gaps = 1/235 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI R+ + P IP+ ++ FA + +L + + N N ++
Sbjct: 15 FLLIFVRMTGLFVTAPIFGRRNIPVYFKVGFAF-ITAILASSVIKVDHIINTDNFLIFAL 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
++ E +G + G + + G +I IG + ++ +L I+
Sbjct: 74 YILKEFLVGIIIGFVAYAVFTCIYLAGQIIDMQIGFGMVNVFDPMSNIQIPVTANLYFIL 133
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
++ V + HH + AL +S+ +P+G + + ++ F + ++++P +
Sbjct: 134 AMIIFLVTNGHHMLIKALFESFQLVPLGSGVIGPKFTDDVIGLISGVFSMGFKIAAPVVA 193
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ +G+++K +PQ+ ++ + P I LG L + ++I VY +
Sbjct: 194 AIFITDVVLGIISKTIPQMNVFILGMPLKIFLGILIVMITIPAFVYIVTVITDDM 248
>gi|167560943|ref|ZP_02353859.1| flagellar biosynthetic protein FliR [Burkholderia oklahomensis
EO147]
gi|167568202|ref|ZP_02361076.1| flagellar biosynthetic protein FliR [Burkholderia oklahomensis
C6786]
Length = 260
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P P++V++ A ++V+ P L + F +
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVTGHRATPVRVKIGLAGFMALVVAPTLGPMPVVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHASGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +LA D H QVF ALV S+ +PI L + + V F + L L+
Sbjct: 129 FLNAIAILAFLAFDGHLQVFAALVDSFRLVPISAGLLRAPGWQTIVAFGAAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ + P + +G L + L +V F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLVPFVGRLFDTG 248
>gi|189426337|ref|YP_001953514.1| flagellar biosynthetic protein FliR [Geobacter lovleyi SZ]
gi|189422596|gb|ACD96994.1| flagellar biosynthetic protein FliR [Geobacter lovleyi SZ]
Length = 265
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 114/241 (47%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ + + LI+CR+G LP +P ++++ +A ++V LP L T
Sbjct: 8 LPSQSDVFLFALILCRIGGLFAALPVFGGKRLPTRIKIAAVLAITLVCLPVLKITPP-PL 66
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
+ LVM E+ +G + ++ ++F+G +I +G ++ + + S
Sbjct: 67 PGDAFTLGLLVMREMLIGLTLAFITQIIFAAVEFSGQIIGLQMGFSISSVLDPSMGTQTQ 126
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
++ + ++ L ++ HH A+V S+ IP+G + VN F++
Sbjct: 127 IMSVVQSLLATLFFLSLNIHHVFISAIVDSFTVIPLGGWKMSEALIHFLVNATSEVFILG 186
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+RL++P + ++ ++ +G++ + PQ+ ++ +S P IGLG + L +++ + + S
Sbjct: 187 IRLAAPVMVALLLTSVVLGIMARAFPQMNVFMVSFPLNIGLGFMVLGMTLLLFFHVLELS 246
Query: 243 F 243
F
Sbjct: 247 F 247
>gi|289629018|ref|ZP_06461972.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|298487819|ref|ZP_07005859.1| Flagellar biosynthesis protein fliR [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157544|gb|EFH98624.1| Flagellar biosynthesis protein fliR [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330880587|gb|EGH14736.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 258
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q
Sbjct: 10 STWVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SG--LLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLSMNGHLVVLEVLVESFTTMPVGGGLLVNNFWE-LANGLGWALSSGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+
Sbjct: 187 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQPIASQ 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|257484901|ref|ZP_05638942.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289651608|ref|ZP_06482951.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
aesculi str. 2250]
gi|320325129|gb|EFW81198.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329388|gb|EFW85381.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866460|gb|EGH01169.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330889045|gb|EGH21706.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. mori
str. 301020]
gi|330986504|gb|EGH84607.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011079|gb|EGH91135.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 261
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q
Sbjct: 13 STWVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDL 72
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 73 SG--LLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 131 QFFTMLVTLLFLSMNGHLVVLEVLVESFTTMPVGGGLLVNNFWE-LANGLGWALSSGLRL 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+
Sbjct: 190 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQPIASQ 249
Query: 246 GF 247
Sbjct: 250 AL 251
>gi|157145256|ref|YP_001452575.1| flagellar biosynthesis protein FliR [Citrobacter koseri ATCC
BAA-895]
gi|157082461|gb|ABV12139.1| hypothetical protein CKO_00993 [Citrobacter koseri ATCC BAA-895]
Length = 264
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L ++++ P L V
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERTVPKRVKLGLGFMITLIIAPSLPAN---NVPVFST 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 EALWLAMQQIMIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSRLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG + N F + F+ L L+
Sbjct: 129 LDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGGDPVNSNAFLALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+S+GLLN++ PQ+ ++ I P + +G L + + +I H F F
Sbjct: 189 PVITLLLTLNLSLGLLNRMAPQLSVFVIGFPLTLSVGILLITALMPLIAPFCEHLFGEIF 248
>gi|258514017|ref|YP_003190239.1| flagellar biosynthesis protein FliR [Desulfotomaculum acetoxidans
DSM 771]
gi|257777722|gb|ACV61616.1| flagellar biosynthetic protein FliR [Desulfotomaculum acetoxidans
DSM 771]
Length = 255
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 106/239 (44%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ FL+ R+ + +M P IP +++ F++ + ++ P + T
Sbjct: 6 LLVVFFLVFIRITAFMMTAPFFEYRNIPNLLKIGFSLLLAGIVFPVIK-TSGFSVPGGVL 64
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y VM E +G + GL+ G++ G +I IG + + T +
Sbjct: 65 GYILAVMAEAGVGLMLGLIASFIFHGIRMAGQLIDLQIGFAMAMVFDPLSEMQTTIIARF 124
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ L+ ++ H+ + +LVKSY +P+ + + V F + ++S+
Sbjct: 125 LNLLALIFFLNVNGHYYLIESLVKSYDLVPLTAMAIKSGVVLTVVKFFSGMFALAFQISA 184
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ ++S+G +++ VPQ+ ++ + P I +G L L + + ++ F
Sbjct: 185 PIIAVLVIIDLSLGFVSRTVPQLNVFMLGFPVKIVVGILTLSVVVPVLGTLLQDVFKTM 243
>gi|28869178|ref|NP_791797.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967545|ref|ZP_03395693.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv.
tomato T1]
gi|301382882|ref|ZP_07231300.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
tomato Max13]
gi|302061092|ref|ZP_07252633.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
tomato K40]
gi|302131292|ref|ZP_07257282.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28852418|gb|AAO55492.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927846|gb|EEB61393.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv.
tomato T1]
Length = 258
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 110/242 (45%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q
Sbjct: 10 STWVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SG--LLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLSMNGHLVALEILVESFTTMPVGGGLLVNNFWE-LANGLGWALSAGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+
Sbjct: 187 VLPAVTALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQPIATQ 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|167834872|ref|ZP_02461755.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis
MSMB43]
Length = 260
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + + P P++V++ A ++V+ P L + F +
Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRATPVRVKIGLAGFMALVVTPTLPPMPVVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 GVWI--IVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHASGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QVF ALV S+ +PI +L + + V F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVFAALVDSFRLVPISADLLRAAGWQTLVAFGAAIFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ + P + +G L + L +V F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMAPNLVPFVGRLFDTG 248
>gi|70729045|ref|YP_258779.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens Pf-5]
gi|68343344|gb|AAY90950.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens Pf-5]
Length = 255
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + RV S +M++P + +P +VRL FA+A ++V+ P L ++
Sbjct: 7 STWVASFMLPLFRVTSLLMVMPVFGTTLVPRRVRLYFALAITVVIAPGLPPMPEVHALDL 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
LV ++ +G V G ++++ G +++ +G+ + + ++ ++ +
Sbjct: 67 SG--LLLVAEQILIGAVLGFSLQLFFQAFVVAGQIVAIQMGMGFASMVDPTNGVSVAVIG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H VF L +S+ T+P+G L N + L L L
Sbjct: 125 QFFTMLVTLLFLAMNGHLVVFEVLTESFTTLPVGGGLMV-NHYWELAGKLGWVLGAALLL 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + +V NI+ G++ + PQ+ I+ I P + LG + +S+ I+ Q+
Sbjct: 184 VLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIVWISLADILNQYQPLASE 243
Query: 246 GF 247
Sbjct: 244 AL 245
>gi|308068670|ref|YP_003870275.1| flagellar biosynthetic protein fliR [Paenibacillus polymyxa E681]
gi|305857949|gb|ADM69737.1| Flagellar biosynthetic protein fliR [Paenibacillus polymyxa E681]
Length = 261
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 7/243 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
LI CR+ S ++ P S +P ++ + ++V+ + V
Sbjct: 8 FPVFLLIFCRITSFFVVAPIFSTRGVPNIFKVGISGFLALVVYLTYGTHQQVPTDVA--- 64
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LV E+ +G + G ++ +Q GS I +G + + + +
Sbjct: 65 YVLLVGREVLIGLLLGFTAYLFMTAIQTAGSFIDLQVGFGMASVFDPMTGASTPLTGNFK 124
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN----FGNIFSSFVNMLQTTFMIMLR 184
I +L I+ HH + A++ SY +P+ + G++ V +FM+ +
Sbjct: 125 FAIAVLFFLSINGHHHLLNAILYSYDWVPLTNDFFVKLYGGSVTEFLVRSFAESFMLAFQ 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + + ++ +G L K PQ I+ I P I +G L L + + F F
Sbjct: 185 IAAPIVVATFLTDVGLGFLAKTAPQFNIFVIGVPLKIIVGLFMLLLLMPSFAFIFERLFS 244
Query: 245 YGF 247
F
Sbjct: 245 VMF 247
>gi|254436544|ref|ZP_05050038.1| flagellar biosynthetic protein FliR [Octadecabacter antarcticus
307]
gi|198251990|gb|EDY76304.1| flagellar biosynthetic protein FliR [Octadecabacter antarcticus
307]
Length = 275
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 99/240 (41%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
M+ FL + R+ + M P + IP+Q R+ ++ + L + + N +
Sbjct: 25 FMLIFFLHILRLSAFFMAAPFFGAAAIPVQARIIISVLIAFSLYGLI--EVPDPNQLPFL 82
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++V++E+ +G GL + + G I+ + GL + + ++
Sbjct: 83 ALIEVVLIEIAIGVSLGLTFTILFASVAMAGEQIAISAGLGFAAQVDPNSGGQTPVVSQF 142
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + A ++ H V + S+ +P+G+ NF + S + F+I RL+
Sbjct: 143 LNLFAIAAFLSLNGHLHVIGVIRMSFEILPLGEPFNFSGLISGGLTAGGHMFVIASRLAL 202
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ NI++G++ + PQ+ ++ P I + L S + +
Sbjct: 203 PIVSILLLANITVGVVTRSAPQLNLFSFGFPLTILTCFVALYFSTTPFAAGIADMIEFML 262
>gi|187925752|ref|YP_001897394.1| flagellar biosynthetic protein FliR [Burkholderia phytofirmans
PsJN]
gi|187716946|gb|ACD18170.1| flagellar biosynthetic protein FliR [Burkholderia phytofirmans
PsJN]
Length = 260
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 109/240 (45%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P L +P++V++ A +I++ P L + F
Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQVTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G+ +++ + TG + +GL T + + L+S
Sbjct: 71 GVWI--IVNQFLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDAQAASSSQVLSS 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +L VID H Q+ AL+ ++ ++P+ + + + N T F L LS
Sbjct: 129 YMNTIAMLVFLVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGSTVFSAGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+S+G+LN+ PQI ++ I P + +G L L L + ++ F+ F G
Sbjct: 189 LPVVAALLITNLSLGILNRAAPQIGVFQIGFPLTMLIGMLLLQLMVPNMIPFFTRLFEVG 248
>gi|161523218|ref|YP_001578230.1| flagellar biosynthetic protein FliR [Burkholderia multivorans ATCC
17616]
gi|189348925|ref|YP_001944553.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
17616]
gi|221214542|ref|ZP_03587512.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD1]
gi|160340647|gb|ABX13733.1| flagellar biosynthetic protein FliR [Burkholderia multivorans ATCC
17616]
gi|189332947|dbj|BAG42017.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
17616]
gi|221165432|gb|EED97908.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD1]
Length = 260
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 106/241 (43%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P +V++ A ++++ P L + F
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHASVPARVKIGVAAFMALIVAPTLGPMPAVTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G G +++ ++ G I ++GL T S A +
Sbjct: 71 GIWI--VVTQFLIGTAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA +D H QV AL S+ ++P+ +L + + T F + L L+
Sbjct: 129 FLNAVAMLAFLAVDGHLQVLAALTASFQSLPVSADLLHAPGWRTLATFGATVFGMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ + P + +G L + L + +V S F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|71735042|ref|YP_275526.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555595|gb|AAZ34806.1| flagellar biosynthetic protein FliR [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 258
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VRL A A ++V+ P L +Q
Sbjct: 10 STWVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SG--LLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLFMNGHLVVLEVLVESFTTMPVGGGLLVNNFWE-LANGLGWALSSGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +S+ I+ Q+
Sbjct: 187 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQPIASQ 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|302185377|ref|ZP_07262050.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
syringae 642]
Length = 258
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 114/242 (47%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q
Sbjct: 10 STWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SA--LLLIGEQIIIGAGMGLSLQLFFHIFVVAGQIISTQMGMGFASMVDPTNGVSSATIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNNFWE-LANGLGWVLSSGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+
Sbjct: 187 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQPIATQ 246
Query: 246 GF 247
G
Sbjct: 247 GL 248
>gi|261407966|ref|YP_003244207.1| flagellar biosynthetic protein FliR [Paenibacillus sp. Y412MC10]
gi|261284429|gb|ACX66400.1| flagellar biosynthetic protein FliR [Paenibacillus sp. Y412MC10]
Length = 262
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/246 (19%), Positives = 110/246 (44%), Gaps = 7/246 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + LI CR+ S ++ P + IP ++ + ++++ + ++
Sbjct: 5 QQSLPVFMLIFCRITSFFVISPVFASRGIPSSYKIALSAIIALIVYLSFGLGEVVPQDLS 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
Y+ L++ E+ +G + G + +Q G++I IG ++ + + +
Sbjct: 65 ---YAILIVQEVLVGLLLGFTAYLIMAVVQTAGALIDIQIGFSMANVIDPFTGTSTPLIG 121
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMI 181
+ + LL ++ HH +F A++ SY IPI ++ GN+ V +F++
Sbjct: 122 NFKYYLALLVFLSMNGHHYLFDAIMYSYDWIPITGDVFGKIHEGNVTDFLVRTFSHSFVL 181
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+++++P + + ++ +G L + PQ ++ I I +G + L L + ++V F H
Sbjct: 182 AIQMAAPLVAALFLTDVGLGFLARTAPQFNVFVIGIIIKIIVGLVLLMLLMPMLVSLFDH 241
Query: 242 SFLYGF 247
F F
Sbjct: 242 LFAKMF 247
>gi|83647844|ref|YP_436279.1| flagellar biosynthesis protein FliR [Hahella chejuensis KCTC 2396]
gi|83635887|gb|ABC31854.1| Flagellar biosynthesis pathway, component FliR [Hahella chejuensis
KCTC 2396]
Length = 261
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 107/241 (44%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ S +M P L +P +VRL ++ +I+++P L ++
Sbjct: 11 AWVGMHLWPLFRISSFMMTTPILGTQIVPARVRLALSLLMTILIVPSLPPVPEVDPLSVN 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +++ ++ +G G + + TG +++ +GL + + ++ + T L+
Sbjct: 71 S--VAIIIQQVLIGLAMGFAVLLLFQLFVVTGQIVAMNMGLGFASMVDPTNGITVTALSQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L + H +F A+V+S+ +PI + + + + F L ++
Sbjct: 129 FYLMLVTLLFLSMGGHLVMFEAVVESFRFLPISAQEVDVWSWWYLASRISWMFASALMIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ NIS G++ + PQ+ I+ I P + G + +SI I+ QF+
Sbjct: 189 LPAVTALLIVNISFGVMTRAAPQMNIFSIGFPMTVLFGLVVFWISIGGILPQFTVLSENT 248
Query: 247 F 247
F
Sbjct: 249 F 249
>gi|220934506|ref|YP_002513405.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. HL-EbGR7]
gi|219995816|gb|ACL72418.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. HL-EbGR7]
Length = 257
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 108/241 (44%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL R+ + ++ P + ++VRL A ++V+ P + ++
Sbjct: 10 AWIGSLLWPFLRISAMLLAAPLYGAGTVTVRVRLAIAFILALVVAPLIPLPPAVEPLSLA 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G G ++++ L G I+ ++GL + + + ++S
Sbjct: 70 G--LVVSVQQILIGLTIGFVLQMVFAALTQAGEAIALSMGLGFASMVDPQSGVQVPVVSS 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L ++ H + + S+ +P+G E + V+ T F+ L ++
Sbjct: 128 YFVIMSTLLFLALNGHVALIELTLLSFQALPVGVEGVTREGLWALVSWGSTMFLYALLVA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+S+G++ + PQ+ I+ + P +I LG + L L+ +++ +F+ G
Sbjct: 188 LPAVASMLLVNLSMGVITRAAPQLNIFAVGFPMMIMLGFILLLLTTPVLLPKFTELLASG 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|121608109|ref|YP_995916.1| flagellar biosynthetic protein FliR [Verminephrobacter eiseniae
EF01-2]
gi|121552749|gb|ABM56898.1| flagellar biosynthetic protein FliR [Verminephrobacter eiseniae
EF01-2]
Length = 256
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 90/240 (37%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + + P S +P++ ++ A ++ L D +
Sbjct: 10 AWLSPVLWPFLRVLALFSVAPVFSARQLPLRAKIGLAFLVALCAQGVLTDQPVISVNGRE 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A V ++ +G G +R+ ++ G +I +GLN + + +
Sbjct: 70 A--LGAVAQQVAVGLAIGFALRLVFTAVELAGEIIGLQMGLNFASFFDPVAHAQISAVTR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ LL V + H V A+V S+ P+ + F L ++
Sbjct: 128 FFDNLVLLLFIVGNGHLLVLMAVVDSFDRFPVDGNFLQALGQMRLHTLGSAIFSSALWIA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++
Sbjct: 188 LPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGLLGITATLPMLESPVLALMQQA 247
>gi|188592194|ref|YP_001796792.1| flir: flagellar biosynthesis inner membrane protein. flir/mope/spar
family. [Cupriavidus taiwanensis LMG 19424]
gi|170938568|emb|CAP63555.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR
family [Cupriavidus taiwanensis LMG 19424]
Length = 265
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/245 (18%), Positives = 99/245 (40%), Gaps = 6/245 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + I P S IP + ++ + ++V+ P + + +
Sbjct: 11 GWLAAFLWPFFRILALIGTAPLFGESTIPRRAKIALSALIAMVVSPTIAQVPVVPVYSFG 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+++ E+ +G G ++R+ +Q G +I +GL+ + + L+
Sbjct: 71 G--LMIILNEVGIGLATGFVMRLVFATVQQAGEIIGLQMGLSFASFFDRAAGGQTMVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIP----IGQELNFGNIFSSFVNMLQTTFMIM 182
+ +I +L +D H + ALV S+ ++P G + F
Sbjct: 129 FLNLIAVLLFLALDGHLLMLGALVDSFNSLPIGGNPGGTPLSAGGAMAVARAGGMVFASG 188
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
L L+ P + ++ N+++G+LN+ PQ+ I+ + P + G L L L + + H
Sbjct: 189 LLLALPMIAALLILNLAMGILNRASPQLSIFAVGFPVTLSGGLLVLMLVMPQMGSYMQHM 248
Query: 243 FLYGF 247
G
Sbjct: 249 IEAGL 253
>gi|315648121|ref|ZP_07901222.1| flagellar biosynthetic protein FliR [Paenibacillus vortex V453]
gi|315276767|gb|EFU40110.1| flagellar biosynthetic protein FliR [Paenibacillus vortex V453]
Length = 262
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 108/246 (43%), Gaps = 7/246 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + LI CR+ S ++ P + +P ++ + ++++ + ++
Sbjct: 5 QQSLPVFMLIFCRITSFFVISPVFTSRSVPTSYKIALSAIIALIVYFSFGLGEVVPQDLS 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
Y L++ E+ +G + G + +Q G++I IG ++ + + +
Sbjct: 65 ---YVILIVQEVLVGLLLGFTAYLIMAVVQTAGALIDIQIGFSMANVIDPFTGASTPLIG 121
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMI 181
+ + LL ++ HH + A++ SY IPI ++ GN+ V +F++
Sbjct: 122 NFKYYLALLVFLSMNGHHYLLDAIMYSYDWIPITGDVFGKIHDGNVTDFLVRTFSHSFVL 181
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L++++P + + ++ +G L + PQ ++ I I +G + L L + ++V F H
Sbjct: 182 ALQMAAPLVAALFLTDVGLGFLARTAPQFNVFVIGIIIKIIVGLVLLMLLMPMLVSLFDH 241
Query: 242 SFLYGF 247
F F
Sbjct: 242 LFAKMF 247
>gi|302878287|ref|YP_003846851.1| flagellar biosynthetic protein FliR [Gallionella capsiferriformans
ES-2]
gi|302581076|gb|ADL55087.1| flagellar biosynthetic protein FliR [Gallionella capsiferriformans
ES-2]
Length = 260
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 107/242 (44%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+I + +L + R+ + I P L +P +V++ ++ +IV+ P L D+ +
Sbjct: 10 DIWLSTLLYPMVRLLAMISSAPILGNKQVPARVKIGLSVLMAIVIAPTLAPMPDIP--LG 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+++ ++ +G G +R+ ++ G +GL + + + T
Sbjct: 68 SPQSLLIMVQQIIIGVSMGFTMRIVFTAVEMAGEFSGLQMGLGFASFYNPQSASSSTVTA 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+GII LA ++ H + + +S+ T+P+GQ + + +++ T F L+L
Sbjct: 128 QFMGIIATLAFLSMNGHLMLLALVTESFHTLPVGQMMATKSFYTA-AQWGATIFAYGLQL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P L ++ N+++G++ + Q+ + I P + +G L LS+ +
Sbjct: 187 SMPLLAALLITNLALGIMTRAAQQLNPFAIGFPITLTVGFFVLSLSLPYLAPMLDRMTTE 246
Query: 246 GF 247
G
Sbjct: 247 GL 248
>gi|330899443|gb|EGH30862.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 258
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 113/242 (46%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q
Sbjct: 10 STWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SA--LLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNNFWE-LANGLGWALASGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+
Sbjct: 187 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQYQPIATQ 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|66046671|ref|YP_236512.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
syringae B728a]
gi|63257378|gb|AAY38474.1| Flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
syringae B728a]
Length = 261
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 113/242 (46%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q
Sbjct: 13 STWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDL 72
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 73 SA--LLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 131 QFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNNFWE-LANGLGWVLASGLRL 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+
Sbjct: 190 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQYQPIATQ 249
Query: 246 GF 247
Sbjct: 250 AL 251
>gi|330953764|gb|EGH54024.1| flagellar biosynthesis protein FliR [Pseudomonas syringae Cit 7]
gi|330972451|gb|EGH72517.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 258
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 113/242 (46%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q
Sbjct: 10 STWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SA--LLLIGEQIIIGAGMGLSLQLFFHIFVVAGQIISTQMGMGFASMVDPTNGVSSATIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNNFWE-LANGLGWVLASGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ I+ Q+
Sbjct: 187 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQPIATQ 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|221639479|ref|YP_002525741.1| Flagellar biosynthetic protein FliR [Rhodobacter sphaeroides KD131]
gi|221160260|gb|ACM01240.1| Flagellar biosynthetic protein FliR [Rhodobacter sphaeroides KD131]
Length = 269
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/235 (17%), Positives = 95/235 (40%), Gaps = 2/235 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
F+ R+G+ ++ P ++P+ VR+ + ++ +L + + + L
Sbjct: 23 FVASLRIGAFLIASPAFGGRFVPLPVRIVATVILTLPVLGRV--ELPPPEALASLAAIPL 80
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+M E+ +G GL++ + G I++ GL + S + + G+
Sbjct: 81 MMQEIAVGLSAGLVLTILFSAAALAGDRIASTAGLGFAAQIDPSAGGQTPVVAQIFGLAL 140
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
+D H L++SY ++P G G + + F++ L++ P +
Sbjct: 141 TTVFLALDGHLTALDILLRSYESLPPGAPFAPGRFLEAGIGAGGRMFLLGLQIMMPVVAA 200
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
I+ N++IG++ + PQ+ ++ P + + L L+ + FS
Sbjct: 201 LILINVTIGIVTRSAPQLNVFSFGFPVTMSATLILLFLTAPGTMGAFSGLVEESL 255
>gi|227328346|ref|ZP_03832370.1| flagellar biosynthesis protein FliR [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 261
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + I P + I +V++ ++++ P+L V
Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGALITLLVAPYLPLNTTPIFSVAG- 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G GL +++ ++ G +I +GL T + +
Sbjct: 71 --VWLLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I+ +L D H + L S+ T+PI + F + F+ L L+
Sbjct: 129 LNILAILLFLTFDGHLWMISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++G+LN++ PQ+ ++ + P + +G + L L + ++ H F F
Sbjct: 189 PIITLLLTINLALGMLNRVAPQLSVFVVGFPITLTVGIMTLGLLLPLVPPFAEHLFSEVF 248
>gi|172059102|ref|YP_001806754.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MC40-6]
gi|171991619|gb|ACB62538.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MC40-6]
Length = 260
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/241 (23%), Positives = 110/241 (45%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P++V++ A ++V+ P L D+ F
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAP 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G G +++ ++ G I ++GL T + A +
Sbjct: 71 GIWI--VVTQFLIGVALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +LA +D H QVF AL S+ T+P+ +L + + T F + L L+
Sbjct: 129 FLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|87119471|ref|ZP_01075368.1| flagellar biosynthesis protein [Marinomonas sp. MED121]
gi|86164947|gb|EAQ66215.1| flagellar biosynthesis protein [Marinomonas sp. MED121]
Length = 260
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +S L R+G+ ++ LP + ++R+ FA +I++ P +
Sbjct: 11 GLTVSFLLPFFRIGAFLLALPLFGTQLVSTRIRIAFAFVIAIIVTPSVPVPSYDPV---S 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y+ L+ ++ +G V G ++ V G + + GL S ++ ++ L
Sbjct: 68 PYFVLLIAEQIIIGIVLGFVVSVLFQVFSLAGQLAAMKAGLGFAMSNDPANGISVATLGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ LA + D HH +F LV+S+ PIG+ N + V + F L +
Sbjct: 128 YYLTMVGLAFLLTDGHHVMFEYLVESFDYWPIGEGFNS-EYYYDIVLLGGWMFEKALLMV 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P +V N+S G++ K PQ+ I+ + P ++ F + +E + + F
Sbjct: 187 LPLAIAVLVMNLSFGVVAKASPQLNIFALGFPVIMLFSLFFFWIMLEDFLDIYRLFFTE 245
>gi|330826719|ref|YP_004390022.1| flagellar biosynthetic protein FliR [Alicycliphilus denitrificans
K601]
gi|329312091|gb|AEB86506.1| flagellar biosynthetic protein FliR [Alicycliphilus denitrificans
K601]
Length = 254
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + P SM IP++VR+ A ++ L +
Sbjct: 11 AWLSPVLWPFLRVLALFTSAPVFSMRAIPVRVRIGLAFLVALCAQAALPGQPVIDLGGRE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + V+ ++ +G G +R+ + ++ G VI +GLN + + + + +
Sbjct: 71 A--AGAVLQQVGVGLAIGFAVRLVFVAVELAGEVIGLQMGLNFASFFDPASNAQVSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G I +L V++ H V A+VKS+ + P+ + F L ++
Sbjct: 129 FFGNIAMLLFVVVNGHLMVLMAVVKSFESFPVDGHFLQAVAQMRLHELGAAVFASGLWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++
Sbjct: 189 LPMIALLLFVNLTLGVISRVAPQMNIYAVGFPVTLTVGMLGITATLPMLEQPMLTLLQQA 248
>gi|261821161|ref|YP_003259267.1| flagellar biosynthesis protein FliR [Pectobacterium wasabiae
WPP163]
gi|261605174|gb|ACX87660.1| flagellar biosynthetic protein FliR [Pectobacterium wasabiae
WPP163]
Length = 261
Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 100/240 (41%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + I P + I +V++ + ++++ P+L V
Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGVLITLLVAPYLPLNTTPIFSVAG- 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G GL +++ ++ G +I +GL T + +
Sbjct: 71 --VWLLIQQILIGITLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMPVIARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I+ +L D H + L S+ T+PI + F + F+ L L+
Sbjct: 129 LNILAILLFLTFDGHLWLISLLADSFHTLPISTSPINSHAFLALARAGGLIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++G+LN++ PQ+ I+ + P + +G + L L + +I H F F
Sbjct: 189 PIITLLLTINLALGMLNRMAPQLSIFVVGFPITLTVGIMTLGLLLPLIPPFAEHLFSEVF 248
>gi|330502778|ref|YP_004379647.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina NK-01]
gi|328917064|gb|AEB57895.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina NK-01]
Length = 258
Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 109/242 (45%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L + R+ + +M++P + +P +VRL A+A S+VL+P L +
Sbjct: 10 SGWVGQFLLPLFRIAAMLMVMPIIGTQLVPTRVRLYLALAISVVLVPTLPPMPQVDALSL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
R+ +++ ++ +G + G +++++ G +I+ +GL + + ++ ++ L
Sbjct: 70 RS--LLMILEQVLIGAMFGFILQLFFHLFAVAGQIIAMQMGLGFASMVDPTNGVSVPVLG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L I+ H V L +S+ ++P GQ + N + + L L L
Sbjct: 128 QFMLMLVTLLFLAINGHLVVLEILAESFISLPPGQGMMV-NHYWTLAGKLSWVIGAGLLL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + +V N++ G++ + PQ+ I+ I P + +G + + + F
Sbjct: 187 TLPMVTALLVINLAFGVMTRAAPQLNIFSIGFPLTLAMGLVIFWVGLSDFGSLFQALASE 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|258404719|ref|YP_003197461.1| flagellar biosynthetic protein FliR [Desulfohalobium retbaense DSM
5692]
gi|257796946|gb|ACV67883.1| flagellar biosynthetic protein FliR [Desulfohalobium retbaense DSM
5692]
Length = 260
Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 1/233 (0%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
S L RV + I +P LS P ++R A+ ++++ P + TI NF
Sbjct: 13 SFLLCFIRVAAIIGSMPVLSGGQTPARLRAGLALVLAVIIFPAVDGTIPDINF-APLRLF 71
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
L E+ LG + G + R+ L QF G+++ +G + ++ +
Sbjct: 72 VLGSQEVLLGLMLGFIGRLLFLAAQFGGTILGFQMGFAAANILDPQSQQQIQLMSQFQNV 131
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+ L +D HH +L +S+ +P G L+ + S V M F++ L+L++P
Sbjct: 132 LASLVFLAVDGHHVFLRSLARSFEVVPPGGGLHLQDAVPSMVAMTGEMFVLGLQLTAPIY 191
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
I+ + +G+++++ PQ+ + + P IG+ FL LS E IV F
Sbjct: 192 VILILSDFILGIMSRIFPQLNAFMLKFPINIGVAFFFLGLSAEFIVSILISEF 244
>gi|237799250|ref|ZP_04587711.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022105|gb|EGI02162.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 258
Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 112/235 (47%), Gaps = 3/235 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + L + R+ + + +P + + +P +VR+ A A ++V+ P L D +Q
Sbjct: 10 STWVAAFMLPLFRIIALLTTMPVIGTTLVPRRVRMYLAFAITVVVAPALPDMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SA--LLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ ++P+G L N + N L LRL
Sbjct: 128 QFFTLLVTLLFLSMNGHLVVLEILVESFTSMPVGSGLLVNNFWE-LANGLGWVLGSGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
P + ++ NI+ G++ + PQ+ I+ I P + +G + L +++ I+ Q+
Sbjct: 187 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWMTMGDILNQYQ 241
>gi|330976010|gb|EGH76076.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 258
Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 114/242 (47%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L +Q
Sbjct: 10 STWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G GL ++++ G +IST +G+ + + ++ ++ +
Sbjct: 70 SA--LLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H V LV+S+ T+P+G L N + N L LRL
Sbjct: 128 QFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNNFWE-LANGLGWALASGLRL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ G++ + PQ+ I+ I P + LG++ L +++ ++ Q+
Sbjct: 187 VLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGTVILWMTMGDMLNQYQPIATQ 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|329929261|ref|ZP_08283014.1| flagellar biosynthetic protein FliR [Paenibacillus sp. HGF5]
gi|328936630|gb|EGG33073.1| flagellar biosynthetic protein FliR [Paenibacillus sp. HGF5]
Length = 264
Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 48/246 (19%), Positives = 109/246 (44%), Gaps = 7/246 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + LI CR+ S ++ P + IP ++ + ++++ + ++
Sbjct: 7 QQSLPVFMLIFCRITSFFVISPVFASRGIPSSYKIALSAIIALIVYLSFGLGEVVPQDLS 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
Y L++ E+ +G + G + +Q G++I IG ++ + + +
Sbjct: 67 ---YVILIVQEVLVGLLLGFTAYLIMAVVQTAGALIDIQIGFSMANVIDPFTGTSTPLIG 123
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMI 181
+ + LL ++ HH +F A++ SY IPI ++ GN+ V +F++
Sbjct: 124 NFKYYLALLVFLSMNGHHYLFDAIMYSYDWIPITGDVFGKIHEGNVTDFLVRTFSHSFVL 183
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+++++P + + ++ +G L + PQ ++ I I +G + L L + ++V F H
Sbjct: 184 AIQMAAPLVAALFLTDVGLGFLARTAPQFNVFVIGIIIKIIVGLVLLMLLMPMLVSLFDH 243
Query: 242 SFLYGF 247
F F
Sbjct: 244 LFAKMF 249
>gi|119899018|ref|YP_934231.1| flagellar biosynthesis protein FliR [Azoarcus sp. BH72]
gi|119671431|emb|CAL95344.1| flagellar biosynthesis protein FliR [Azoarcus sp. BH72]
Length = 270
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 2/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + +L + R+ P S IP+++R MA I L Q
Sbjct: 10 DAWLAALMFPLARLLGLFATAPVFSNRAIPVRIR--LTMALGIALALLPALPAMPQTPPG 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+++ ++F+G G +IR+ + GS+I +GL+ L+
Sbjct: 68 GGIGLLVMVQQMFIGIAIGFMIRIVFAAIDMAGSLIGMQMGLSFAVFFDPDAGGQTAVLS 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L I+ H + AL++S+ +PIG + + ++ F L L
Sbjct: 128 DFLSLVATLLFLSINGHLMLVAALIRSFEWLPIGLNVVSASGWAYIARAGAAVFATGLLL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P + +V NI++G+L + PQ+ ++ I P + +G + L L + F +
Sbjct: 188 SLPIVAVLLVANIALGILTRAAPQLNLFAIGFPVTLAMGFMGLILIMTNFGPVVVSLFEH 247
Query: 246 GF 247
GF
Sbjct: 248 GF 249
>gi|126665003|ref|ZP_01735986.1| flagellar biosynthesis protein R [Marinobacter sp. ELB17]
gi|126630373|gb|EBA00988.1| flagellar biosynthesis protein R [Marinobacter sp. ELB17]
Length = 259
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ S +M++P +P +VRL A+ +I+++P + +
Sbjct: 13 QWVGQHLWPLFRIASFLMVIPVFGTQLVPARVRLGLALLMTIIVVPMIPPVPQIDALSAD 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G G + G +I+ +GL + + ++ + L
Sbjct: 73 A--VVITLQQILIGVGLGFALTALWQLFVIAGQMIAMQMGLGFASMVDPANGVNVAVLAQ 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L ++ H F ++S+ T+PIG E + + F+ + ++
Sbjct: 131 IYTITITLLFLAMNGHLVAFEVFIESFRTLPIGLEGLGQAGMWQLAHRISWMFVSAMLMA 190
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ +IS G++ + PQ+ I+ + P + G + + + F
Sbjct: 191 LPAVTAVLIVSISFGVMTRAAPQMNIFALGFPIGLIFGLFAIWVLHANFLPHFEVYARQT 250
Query: 247 F 247
F
Sbjct: 251 F 251
>gi|221201781|ref|ZP_03574818.1| flagellar biosynthetic protein FliR [Burkholderia multivorans
CGD2M]
gi|221207714|ref|ZP_03580722.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2]
gi|221172560|gb|EEE04999.1| flagellar biosynthetic protein FliR [Burkholderia multivorans CGD2]
gi|221178201|gb|EEE10611.1| flagellar biosynthetic protein FliR [Burkholderia multivorans
CGD2M]
Length = 260
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 107/241 (44%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P +V++ A ++++ P L + F +
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHASVPARVKIGVAAFMALIVAPTLGPMPAVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G G +++ ++ G I ++GL T S A +
Sbjct: 71 GIWI--VVTQFLIGTAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA +D H QV AL S+ ++P+ +L + + T F + L L+
Sbjct: 129 FLNAVAMLAFLAVDGHLQVVAALTASFQSLPVSADLLHAPGWRTLAAFGATVFGMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ + P + +G L + L + +V S F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|227112529|ref|ZP_03826185.1| flagellar biosynthesis protein FliR [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 261
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + I P + I +V++ ++++ P+L V
Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGALITLLVAPYLPLNTTPIFSVAG- 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G GL +++ ++ G +I +GL T + +
Sbjct: 71 --VWLLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I+ +L D H + L S+ T+PI + F + F+ L L+
Sbjct: 129 LNILAILLFLTFDGHLWMISLLADSFYTLPISANPINSHAFLALARAGGLIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++G+LN++ PQ+ ++ + P + +G + L L + ++ H F F
Sbjct: 189 PIITLLLTINLALGMLNRVAPQLSVFVVGFPITLTVGIMTLGLLLPLVPPFAEHLFSEVF 248
>gi|170694402|ref|ZP_02885556.1| flagellar biosynthetic protein FliR [Burkholderia graminis C4D1M]
gi|170140825|gb|EDT08999.1| flagellar biosynthetic protein FliR [Burkholderia graminis C4D1M]
Length = 260
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 108/240 (45%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P L +P++V++ A +I++ P L + F
Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPLRVKIGLAAFVTIIVAPTLGALPQVTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G+ +++ + TG + +GL T S + L++
Sbjct: 71 GVWI--IVNQFLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDAQASSSSQVLST 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +L VID H Q+ AL+ ++ T+P+ + + + N T F L LS
Sbjct: 129 YMYTIAMLVFLVIDGHLQMISALLATFNTLPVSANILGSPGWRTLANFGSTIFSAGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P + +G L L L ++ F+ F G
Sbjct: 189 LPVVAALLITNLALGILNRAAPQIGVFQIGFPLTMLIGMLLLQLMTPNMIPFFARLFTVG 248
>gi|188586037|ref|YP_001917582.1| flagellar biosynthetic protein FliR [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350724|gb|ACB84994.1| flagellar biosynthetic protein FliR [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 257
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 2/236 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L++ R+ IM P +Y+P Q+++ F++ ++V LP L +
Sbjct: 12 VLFILLLTRISGMIMTAPIFGSNYMPNQIKIAFSLILTLVFLPVLSPEGLSDYHI--MNV 69
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+EL +G G++ + +Q G +I +G + M +
Sbjct: 70 ILFAFMELMVGIAIGMIANLVFSSIQIAGQLIDVQMGFAMARVMDPQYETQVPLIGQFKY 129
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I+ ++ VI+ HH + ++ +SY +PIG + G + + T F++ +++S+P
Sbjct: 130 ILAIMIFLVINGHHLLIRSVYESYQLLPIGNIFDLGAGGVALNELFSTVFVLAIQVSAPA 189
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
L + NI++G+L + VPQ+ ++ I P I +G L L L + + F +
Sbjct: 190 LGTLFLTNIALGVLARTVPQMNVFIIGFPVKIFVGFLSLVLLMPTYTLVLGNLFQH 245
>gi|104782806|ref|YP_609304.1| flagellar biosynthesis protein FliR [Pseudomonas entomophila L48]
gi|95111793|emb|CAK16517.1| flagellar biosynthetic protein FliR [Pseudomonas entomophila L48]
Length = 258
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 104/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + RV + +M +P +P +VRL A+A ++V++P L ++ R
Sbjct: 11 TWVATFILPLFRVTALLMTMPIFGTKMLPARVRLYAAVAITVVIVPGLPPLPEIDPLSLR 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G + G +++ G +++ +G+ + + ++ + ++
Sbjct: 71 G--VLLCGEQIIVGALFGFSLQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVAVVSQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + V++ H F L +S+ T+P+G L N F L L L
Sbjct: 129 FMTMLVSVLFLVMNGHLVAFEILTESFTTLPVGNALVV-NHFWEMAGRLSWVLGAGLLLI 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ G++ + PQ+ I+ I P + LG + + I+ +
Sbjct: 188 LPAIAALLVVNVAFGVMTRAAPQLNIFSIGFPLTLVLGLGIFWVGLADILSHYQALASEA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|221309515|ref|ZP_03591362.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313839|ref|ZP_03595644.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318762|ref|ZP_03600056.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323034|ref|ZP_03604328.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767371|ref|NP_389519.2| flagellar biosynthesis protein FliR [Bacillus subtilis subsp.
subtilis str. 168]
gi|321315404|ref|YP_004207691.1| flagellar biosynthesis protein FliR [Bacillus subtilis BSn5]
gi|239938629|sp|P35537|FLIR_BACSU RecName: Full=Flagellar biosynthetic protein fliR
gi|225184998|emb|CAB13510.2| component of the flagellar export machinery [Bacillus subtilis
subsp. subtilis str. 168]
gi|320021678|gb|ADV96664.1| flagellar biosynthesis protein FliR [Bacillus subtilis BSn5]
Length = 259
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P +P R+ FA +++ + L+
Sbjct: 7 LFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEI---DE 63
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+Y L E +G GL+ + +Q GS I +G ++ + +
Sbjct: 64 HYMLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQF 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN---IFSSFVNMLQTTFMIMLR 184
I + LL + ++ HH + + S+ I + Q F+I +
Sbjct: 124 IYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQ 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+S+P + + ++++G++ + VPQ+ ++ + P I + + L + + +I + F
Sbjct: 184 MSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNVF 242
>gi|283785720|ref|YP_003365585.1| flagellar biosynthesis protein FliR [Citrobacter rodentium ICC168]
gi|282949174|emb|CBG88782.1| flagellar biosynthesis protein FliR [Citrobacter rodentium ICC168]
Length = 264
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + I P LS IP +V+L + ++V+ P L V
Sbjct: 11 QWLSLYFWPLLRVLALISTAPILSERVIPKRVKLGLGIIITVVIAPALPPH---NVPVFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L M ++ +G G ++ ++ G +I +GL+ T + L L
Sbjct: 68 FNALWLAMQQILIGIALGFTMQFTFAAVRTAGEIIGLQMGLSFATFVDPGSRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+I ++ +L + H + LV ++ T+PIG + N F + + F+ L L+
Sbjct: 128 IIDMLAMLLFLTFNGHLWLISLLVYTFHTLPIGGDPVNSNAFLALASAGSLIFLNGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F
Sbjct: 188 LPVITMLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGMTLIAALMPLIAPFCEHLFSEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|253702492|ref|YP_003023681.1| flagellar biosynthetic protein FliR [Geobacter sp. M21]
gi|251777342|gb|ACT19923.1| flagellar biosynthetic protein FliR [Geobacter sp. M21]
Length = 261
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 107/243 (44%), Gaps = 1/243 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ ++ ++ L L++ RV +P +P +V++ A ++++ P + +
Sbjct: 5 LPLTSLADLIPLALVLARVAGLFSAIPMFGARLVPARVKMGLIFAMTLLIFPVIKPH-AV 63
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
N + LV+ E +G G + + ++F G ++ T +G+++ +
Sbjct: 64 PNVSDSLGLMLLVLQEALVGLTLGAVSQFIFAAVEFCGQLVGTQMGISMAAQFDPATQNN 123
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ G + L + H +V SY IP+G G + F+ F+
Sbjct: 124 VPTMAIFQGALATLLFLAFNVHEHFIRGIVDSYRVIPLGAWHVSGGLMKFFIETSTGIFI 183
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I ++L++P + ++++G++ + P + ++ +S P IG+G + L +S+ + V
Sbjct: 184 IGIKLAAPVSVALLATSVALGIVARSFPAMNVFMVSMPLSIGIGFVILGISLPVFVRVLQ 243
Query: 241 HSF 243
SF
Sbjct: 244 GSF 246
>gi|78064696|ref|YP_367465.1| flagellar biosynthesis protein FliR [Burkholderia sp. 383]
gi|77965441|gb|ABB06821.1| Flagellar biosynthesis protein FliR [Burkholderia sp. 383]
Length = 260
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 110/241 (45%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P++V++ A ++V+ P L D+ F +
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGLAAFMALVVAPTLGAMPDVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + + +G G +++ ++ G I ++GL T S A +
Sbjct: 71 GIWILV--TQFLIGAAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHTSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA +D H QVF AL S+ ++P+ +L + + T F + L L+
Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALTASFQSLPVSADLLHAPGWRTLAGFGTTVFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P + +G L + L I +V +H F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQIGFPVTMLVGLLLVQLMIPNLVPFVAHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|325525520|gb|EGD03319.1| flagellar biosynthetic protein FliR [Burkholderia sp. TJI49]
Length = 260
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 106/241 (43%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + +P++V++ A ++++ P L + F
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHPSVPVRVKIGVAAFMALIVAPTLGAMPPVTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G G +++ ++ G I ++GL T S A +
Sbjct: 71 GIWI--VVTQFLIGAAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA +D H QVF AL S+ ++P+ L + + T F + L L+
Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALAASFQSLPVSAALLHAPGWRTLAAFGATVFGMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P + +G L + L + +V S F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQIGFPVTMLVGLLLVQLMVPNLVPFVSRLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|170698075|ref|ZP_02889156.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria
IOP40-10]
gi|170137036|gb|EDT05283.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria
IOP40-10]
Length = 260
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 57/241 (23%), Positives = 111/241 (46%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P++V++ A ++V+ P L D+ F +
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G G +++ ++ G I ++GL T + A +
Sbjct: 71 GIWI--VVTQFLIGVALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +LA +D H QVF AL S+ T+P+ +L + + T F + L L+
Sbjct: 129 FLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|308048764|ref|YP_003912330.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799]
gi|307630954|gb|ADN75256.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799]
Length = 261
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 97/239 (40%), Gaps = 3/239 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ S+ + R+ + IM++ + S +P +VRL ++ + + P L ++
Sbjct: 11 WLRSVLWPLFRISAMIMVMVTIGGSSVPARVRLLLSVMITAAVAPILPAPPPVELLSAEG 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G G + + G +I L + + S+ +
Sbjct: 71 FLIS--AQQVVIGIAIGFVSVLVLNTFVLAGQIIGMQTSLGFASMVDPSNGQQVPLVGQF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L + +D H + LV S+ T+PIG+ L + + V F L LS
Sbjct: 129 YLLLSTLLFFGVDGHLLMIRMLVASFETLPIGEGL-SPSGLDAIVKFGGLMFASALTLSL 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
++ N S G++ + PQ+ I+ I P + G L L L++ ++ F + G
Sbjct: 188 SAATALLLINFSFGVMTRAAPQLNIFAIGFPITMLSGLLILWLTLGGVLSHFYSVWDAG 246
>gi|50120647|ref|YP_049814.1| flagellar biosynthesis protein FliR [Pectobacterium atrosepticum
SCRI1043]
gi|49611173|emb|CAG74619.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
SCRI1043]
Length = 261
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 100/240 (41%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + I P + I ++++ + ++++ P+L V
Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRIKIGLGVLITLLVAPYLPLNTTPIFSVAG- 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G GL +++ ++ G +I +GL T + +
Sbjct: 71 --VWLLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVIARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I+ +L D H + L S+ T+PI + F + F+ L L+
Sbjct: 129 LNILAILLFLTFDGHLWLISLLADSFYTLPISTNPINSHAFLALARAGGLIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++G+LN++ PQ+ I+ + P + +G + L L + +I H F F
Sbjct: 189 PIITLLLTINLALGMLNRMAPQLSIFVVGFPITLTVGIMTLGLLLPLIPPFAEHLFSEVF 248
>gi|289208349|ref|YP_003460415.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. K90mix]
gi|288943980|gb|ADC71679.1| flagellar biosynthetic protein FliR [Thioalkalivibrio sp. K90mix]
Length = 253
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 106/241 (43%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + ++ R+G+ ++++P + VR+ FA+ +I + +
Sbjct: 6 VWVGAVMWPFARIGAMLLVMPVFGGDQLTATVRILFALVLAIFVAMQGPALPAVDPISIE 65
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G V G ++++ L G VI+ ++GL + + + + +++
Sbjct: 66 G--VVVTVHQILIGLVMGFILQMVFSALTQAGEVIALSMGLGFASIVDPAQGVQVPVVST 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I+ L ++ H L+ S+ T+P+ +S + F + ++
Sbjct: 124 IFVIMATLIFLAMNGHLIALELLLTSFETLPVAPSGLDAEALASLIAFGSVMFQGAVLVA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+S+G++ + PQ+ I+ + P +I +G + L L++ + + G
Sbjct: 184 IPAVASLLLVNLSMGVITRASPQLNIFAVGFPMMILMGFILLMLTMPGLPERLGDLLFDG 243
Query: 247 F 247
F
Sbjct: 244 F 244
>gi|171316885|ref|ZP_02906094.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MEX-5]
gi|171097966|gb|EDT42784.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria MEX-5]
Length = 260
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P++V++ A ++V+ P L D+ F +
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G GL +++ ++ G I ++GL T + A +
Sbjct: 71 GIWI--VVTQFLIGVALGLTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +LA +D H QVF AL S+ T+P+ +L + + T F + L L+
Sbjct: 129 FLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|239997096|ref|ZP_04717620.1| flagellar biosynthesis protein FliR [Alteromonas macleodii ATCC
27126]
Length = 259
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L R+ + + GLS IP QVR + +++++P + + +
Sbjct: 10 QFLADMLLPFMRISGLFVAMIGLSAKSIPPQVRALLGIMLTLIIMPVVPPSP--IENLVD 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+V+ +L +G G + + G VI+ GL + + + + +
Sbjct: 68 VGTFLIVVQQLLIGIAIGFISMMVLNTFVLAGQVIAMQTGLGFASIVDPVNGINVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L W +D H + +V S+ PIG+ G F + F+ + LS
Sbjct: 128 FYLILATLLFWTLDGHLSMIQMIVMSFEAFPIGEAWWTGEQFRDIAHWAGWMFISAVTLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N++ G++ K PQ+ I+ I +G L + ++++ F +
Sbjct: 188 LAPIVSLLIVNLAFGVMTKAAPQLNIFSIGFSIAQVMGLLIIWITLDNFTAHFETQWFRA 247
>gi|332140594|ref|YP_004426332.1| flagellar biosynthesis protein FliR [Alteromonas macleodii str.
'Deep ecotype']
gi|327550616|gb|AEA97334.1| flagellar biosynthesis protein FliR [Alteromonas macleodii str.
'Deep ecotype']
Length = 259
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 95/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L R+ + + GLS IP QVR + ++V++P + +
Sbjct: 10 QFLADMLLPFMRISGLFVAMIGLSAKSIPPQVRALLGIMLTLVIMPVVPPSPIENLVSVG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ +L +G G + + G +I+ GL + + + + +
Sbjct: 70 TFLI--VIQQLLIGIAIGFISMMVLNTFVLAGQIIAMQTGLGFASIVDPVNGINVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L W +D H + +V S+ PIG+ G F + F+ + LS
Sbjct: 128 FYLILATLLFWTLDGHLSMIQMIVMSFEAFPIGEAWWTGEQFRDIAHWGGWMFVSAITLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N++ G++ K PQ+ I+ I +G L + ++++ F +
Sbjct: 188 LAPIVSLLIVNLAFGVMTKAAPQLNIFSIGFSIAQLMGLLIIWITLDNFTAHFETQWFRA 247
>gi|156933430|ref|YP_001437346.1| flagellar biosynthesis protein FliR [Cronobacter sakazakii ATCC
BAA-894]
gi|156531684|gb|ABU76510.1| hypothetical protein ESA_01248 [Cronobacter sakazakii ATCC BAA-894]
Length = 262
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + I P LS I ++V++ A+ +I L P + + +
Sbjct: 11 HWLTLYFWPLLRVLALISTAPILSERSISIRVKIGLALLITIALAPNIPGS---NVPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + ++ +G G ++ ++ G +I +GL+ T L L
Sbjct: 68 LEGLWLGLQQILIGVAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I ++ +L ++ H + L ++ T+PIG E N F + F+ + L+
Sbjct: 128 FIDMLAMLLFLTVNGHLWLISILADTFHTLPIGGEAINSNAFMALTRAGGLIFINGVMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G + L + +I H F
Sbjct: 188 LPMITLLLSLNLALGLLNRMAPQLTVFAIGFPLTLSIGIIVLAALMPLIAPFCEHLFAEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|222112238|ref|YP_002554502.1| flagellar biosynthetic protein flir [Acidovorax ebreus TPSY]
gi|221731682|gb|ACM34502.1| flagellar biosynthetic protein FliR [Acidovorax ebreus TPSY]
Length = 247
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + P SM IP++ R+ A ++ L + +
Sbjct: 2 AWLSPVLWPFLRVLALFTSAPVFSMRVIPVRTRIGLAFLVAVCAQAVLPEQPVISLNSRE 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + V+ ++ +G G +R+ ++ G +I +GLN + + + + +
Sbjct: 62 A--AGAVVQQVGIGLAMGFAVRLVFAAVELAGEIIGLQMGLNFASFFDPASNAQVSAVAR 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G I +L VI+ H V A+VKS+ + P+G + + F L ++
Sbjct: 120 FFGNISMLLFVVINGHLMVLMAVVKSFDSFPVGGNFLQAIGQMRLHELGASLFSSALWIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++
Sbjct: 180 LPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGMLGITATLPMLEQPMLALLQQS 239
>gi|115350083|ref|YP_771922.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria AMMD]
gi|115280071|gb|ABI85588.1| flagellar biosynthetic protein FliR [Burkholderia ambifaria AMMD]
Length = 260
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 57/241 (23%), Positives = 110/241 (45%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P++V++ A ++V+ P L D+ F
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGIAAFMALVVAPTLGAMPDVTVFSAP 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G G +++ ++ G I ++GL T + A +
Sbjct: 71 GIWI--VVTQFLIGIALGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +LA +D H QVF AL S+ T+P+ +L + + T F + L L+
Sbjct: 129 FLNAIAMLAFLAVDGHLQVFAALAASFQTLPVSGDLLHAPGWRTLAAFGATVFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|71906400|ref|YP_283987.1| flagellar biosynthesis protein FliR [Dechloromonas aromatica RCB]
gi|71846021|gb|AAZ45517.1| Flagellar biosynthesis protein FliR [Dechloromonas aromatica RCB]
Length = 260
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 2/241 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +++ + R+ I P S + IP + RL A++ ++ + P L +Q
Sbjct: 10 DAWIVAFVFPLARILGFIAAAPLWSTAGIPRRTRLILAISIAVAITPTLPPMPGVQPGSL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ +G G ++ G IS +GL T +S +
Sbjct: 70 PGLWIL--AQQMLIGIGMGFAAKIVFTAFDIAGEFISFQMGLGFATFYDPLNSSQTPVIT 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
I +I LL ++ H L +S+ IP+ + + + + F L L
Sbjct: 128 EFISLIALLLFLSMNGHLLYLATLAQSFSAIPVSATPLGASSWLNLAELGSKIFSAGLLL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P + ++ N+++ +L + PQ+ ++ + P + G + L +S+ + F +
Sbjct: 188 SLPIIVALMITNVALAVLTRAAPQLNLFALGFPLTLMGGFVALAISLNYLASPLQGIFEF 247
Query: 246 G 246
G
Sbjct: 248 G 248
>gi|288553047|ref|YP_003424982.1| flagellar biosynthesis protein FliR [Bacillus pseudofirmus OF4]
gi|288544207|gb|ADC48090.1| flagellar biosynthesis protein FliR [Bacillus pseudofirmus OF4]
Length = 258
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 99/242 (40%), Gaps = 7/242 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L+ RV + +LP IP ++ A+ S +++ L D + A
Sbjct: 7 LLPAFLLVFVRVLAFFSVLPIYGHRSIPTTHKIGLALMLSWIMIFTL----DTPEVLIDA 62
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ LV+ E+ +G GL+ + +Q G I +G + + +
Sbjct: 63 VFFLLVIKEILVGLSVGLIAMILLYAVQVAGGFIDFNMGFMIANVVDPQTGAQSPLIGGY 122
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLR 184
+ LL L ++ HH + + SY +P+ Q NI F+I +
Sbjct: 123 LYTFALLFLLAVNGHHLLLDGIFYSYQFVPMDQVFLPFGQENIVHYIATTFNAMFIIAFQ 182
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ P + + ++++G++++ VPQ+ ++ + P I +G L + + + + F
Sbjct: 183 MAFPIVGSLFLVDVALGMVSRAVPQMNVFVVGMPLKILVGLPLLIVYMSVFIMVVQKLFD 242
Query: 245 YG 246
Sbjct: 243 QM 244
>gi|297538206|ref|YP_003673975.1| flagellar biosynthetic protein FliR [Methylotenera sp. 301]
gi|297257553|gb|ADI29398.1| flagellar biosynthetic protein FliR [Methylotenera sp. 301]
Length = 270
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 48/245 (19%), Positives = 107/245 (43%), Gaps = 3/245 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ + ++SL + R+ I P + + IP QV+L + ++++ P L +
Sbjct: 6 SDLLQTWIVSLLWPLTRILGVIAAAPIFNHTAIPNQVKLGLGIMLTLIIAPTLPAMPHFE 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
F + + +L +G G +R+ ++ G +I ++GL
Sbjct: 66 IFSFQGLLILV--QQLVIGLAIGFSMRLVFSAVELAGQLIGMSMGLGFAGFYDPQSQGQS 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
T +N + ++ +L +D H + A+ S+ T+PI + + +T F +
Sbjct: 124 TAVNQFLVLLAMLIFLSLDGHLLIITAVANSFLTMPITVGSSGIDPLK-IAMWGETIFSV 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L L+ P + ++ N+++G+L K PQ+ ++ I P + +G + + LS+ ++ +
Sbjct: 183 GLILALPAVAALLITNMALGILTKTAPQLNLFGIGFPVTLSIGLVVIALSLPGMLKPIEN 242
Query: 242 SFLYG 246
G
Sbjct: 243 FIEQG 247
>gi|307546960|ref|YP_003899439.1| flagellar biosynthetic protein FliR [Halomonas elongata DSM 2581]
gi|307218984|emb|CBV44254.1| K02421 flagellar biosynthetic protein FliR [Halomonas elongata DSM
2581]
Length = 266
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ R+ ++ P S +P Q ++ A A ++V+ P L D+ +
Sbjct: 11 AWLVAFLWPFARITGLMLSSPLWGHSSVPRQAKIALAGALTVVIAPMLPPMPDVAIVSWQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +L +G GL++RV +Q TG I +GL T S L+
Sbjct: 71 G--LGILTEQLLIGAAMGLVMRVTLAVVQATGEFIGLQMGLAFATFFDPSSGTNMMVLSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ +I LL +D H V L S+ ++PIG F V T F + L+
Sbjct: 129 LLYMITLLMFLALDVHLVVLEVLANSFRSLPIGIGRFDPAAFMMLVRYGATIFTSGMLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+S+G+LN+ PQ+ ++ I P + +G + L + + + F G
Sbjct: 189 LPLVASLLIINLSLGILNRAAPQLTVFNIGFPTSLTVGIILLMVLMTDLDRFLERLFGQG 248
>gi|315122292|ref|YP_004062781.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495694|gb|ADR52293.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 247
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 191/247 (77%), Positives = 217/247 (87%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M SPEII+MSLFLI CR+GSCIM LPG SM Y+PMQVR F+M FSIVLLPFLWDTIDL
Sbjct: 1 MIASPEIIIMSLFLICCRIGSCIMFLPGFSMPYVPMQVRFFFSMTFSIVLLPFLWDTIDL 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q F +RAYY KLV+VELFLGCVHG+L+R+YT GLQF GSVISTAIGLNLQ+SMGISDS+
Sbjct: 61 QIFADRAYYLKLVIVELFLGCVHGVLVRIYTFGLQFMGSVISTAIGLNLQSSMGISDSIP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET +SLIG IGLLALW+IDFHHQ+FYALVKSYGT PIG+EL+F NIFSS +N+LQ TF+
Sbjct: 121 ETSFSSLIGTIGLLALWIIDFHHQIFYALVKSYGTTPIGKELHFDNIFSSLINILQMTFI 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
IMLRLSSPFLFFY+VFNISIG LNK+VPQIP+YFISTPY++GLG LFL SIE+I+YQF
Sbjct: 181 IMLRLSSPFLFFYVVFNISIGFLNKIVPQIPVYFISTPYMVGLGFLFLYSSIEMIIYQFI 240
Query: 241 HSFLYGF 247
HSF F
Sbjct: 241 HSFNGIF 247
>gi|395392|emb|CAA52219.1| flagellar biosynthetic protein [Bacillus subtilis]
Length = 259
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 96/239 (40%), Gaps = 6/239 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P +P R+ FA +++ + L+
Sbjct: 7 LFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEI---DE 63
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+Y L E +G GL+ + +Q GS I +G ++ + +
Sbjct: 64 HYMLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQF 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN---IFSSFVNMLQTTFMIMLR 184
I + LL + ++ HH + + S+ I + Q L F+I +
Sbjct: 124 IYTMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEQFAYFIAKSLNAMFIIAFQ 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+S+P + + ++++G++ + VPQ+ ++ + P I + + L + + +I + F
Sbjct: 184 MSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNVF 242
>gi|304404262|ref|ZP_07385924.1| flagellar biosynthetic protein FliR [Paenibacillus curdlanolyticus
YK9]
gi|304347240|gb|EFM13072.1| flagellar biosynthetic protein FliR [Paenibacillus curdlanolyticus
YK9]
Length = 263
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 107/243 (44%), Gaps = 7/243 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
LI CR+ + ++ P SM +P ++ ++++ ++ V A
Sbjct: 8 FPIFLLIFCRMTAFFVVAPLFSMRGVPTTFKIGLGFFLTLIVFLTYGVK---ESIVPDAT 64
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y V+ E+ +G + G ++ ++ +Q G+++ ++G + + + L +L
Sbjct: 65 YILFVIREVLVGLLLGFVVYLFFTVVQTAGALMDISMGFAMSNVVDPMTGASSPMLGNLK 124
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN----FGNIFSSFVNMLQTTFMIMLR 184
+I +L ++ HH + AL+ SY +P+ +L G + V TFM+ +
Sbjct: 125 YMILVLVFLSMNGHHYMLTALMDSYKWMPLDNDLFARIYSGKVSEFIVLAFSETFMLAFQ 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++SP + + ++ +G L K PQ ++ I P I +G L L + + F H F
Sbjct: 185 IASPIIVAMFLTDVGLGFLAKTAPQYNVFVIGMPLKILIGVFMLTLILPSMSGVFEHLFS 244
Query: 245 YGF 247
F
Sbjct: 245 TMF 247
>gi|78485087|ref|YP_391012.1| flagellar biosynthetic protein FliR [Thiomicrospira crunogena
XCL-2]
gi|78363373|gb|ABB41338.1| flagellar biosynthetic protein FliR [Thiomicrospira crunogena
XCL-2]
Length = 247
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 2/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
M F R+ ++++P LS SY+PM VRL A+ + + P L + F +
Sbjct: 1 MGLYFWPFIRISGMLLMVPILSGSYVPMNVRLLLAVFITFAVAPSLALPPPVDPFT--WH 58
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L++ +L +G GL+ + G + S ++GL + + + + + +
Sbjct: 59 GILLIVQQLGIGVAIGLIFALIFQAFVIAGHLASMSMGLAMASMVDPATGVNTPIIGRYF 118
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
II L +++ H VF A+++S+ T+PIG + F + ++ P
Sbjct: 119 TIIATLLFLLMNGHVLVFKAVLQSFETLPIGLHFFTQDSLKLIYGFGSQMFESGVTIALP 178
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ ++ NI+ G++ + P + I+ + P + +G + L ++
Sbjct: 179 LVTALLLVNIAFGVVARAAPALNIFAVGFPVTLLVGLIMLVFITPLLYPNLQILM 233
>gi|302392377|ref|YP_003828197.1| flagellar biosynthetic protein FliR [Acetohalobium arabaticum DSM
5501]
gi|302204454|gb|ADL13132.1| flagellar biosynthetic protein FliR [Acetohalobium arabaticum DSM
5501]
Length = 258
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 109/247 (44%), Gaps = 1/247 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M ++ ++ LI+ R+ + P IP +++ A +++L P + D +L
Sbjct: 1 MDLALIELIYQGALIMLRLTGLFLTAPFFGSRVIPKRIKAALAFLVTLILSPVV-DGSNL 59
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ N + EL +G + G + + +Q G +IS +GL + M + +
Sbjct: 60 ELPTNILILLFNFLSELTIGLIFGFITILIFASIQLAGQMISMRMGLAMANIMDPMNGSS 119
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ ++ L VI+ HHQ+ AL S+ IP+ +F + M F
Sbjct: 120 IAVIGQFKNVLATLLFLVINGHHQLLRALKHSFDVIPLTGLRISDALFMKLLRMAGDLFP 179
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +++ P + + +++ GL+ + VPQ+ ++ + P + +GSL L +++ + +
Sbjct: 180 LAFQIALPIIAALFLTDVAFGLVARTVPQMNVFVMGLPTKLLVGSLLLLITVPVYISLIR 239
Query: 241 HSFLYGF 247
F F
Sbjct: 240 GLFDDLF 246
>gi|113969637|ref|YP_733430.1| flagellar biosynthesis protein FliR [Shewanella sp. MR-4]
gi|113884321|gb|ABI38373.1| flagellar biosynthetic protein FliR [Shewanella sp. MR-4]
Length = 265
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S + RV S +M++ + P +VRL A+A ++ + P L D + F
Sbjct: 10 QTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVAITLAIAPVLPPVKDAELFSLS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ +G G + ++ TG +I L + + + +
Sbjct: 70 AVFIT--AQQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + LV S+ T+PI + + + F L +S
Sbjct: 128 FFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALAEWGSYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F +
Sbjct: 188 LSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEEVWASA 247
>gi|24374728|ref|NP_718771.1| flagellar biosynthesis protein FliR [Shewanella oneidensis MR-1]
gi|24349388|gb|AAN56215.1|AE015759_7 flagellar biosynthetic protein FliR [Shewanella oneidensis MR-1]
Length = 265
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S + RV S +M++ + P +VRL A+A ++ + P L D Q F
Sbjct: 10 QTIASYMWPLFRVASMLMVMVVFGAATTPTRVRLLLAIAITLAIAPVLPPVKDAQLFSLS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ +G G + ++ TG +I L + + S + +
Sbjct: 70 AVFIT--AQQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + LV S+ T+PI + S F L +S
Sbjct: 128 FFLLLATLIFLAVDGHLLMIRMLVASFDTLPISNVGLTLTSYRSLAEWGSYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F +
Sbjct: 188 LSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFDEVWASA 247
>gi|114046867|ref|YP_737417.1| flagellar biosynthesis protein FliR [Shewanella sp. MR-7]
gi|113888309|gb|ABI42360.1| flagellar biosynthetic protein FliR [Shewanella sp. MR-7]
Length = 265
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S + RV S +M++ + P +VRL A+A ++ + P L D + F
Sbjct: 10 QTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVAITLAIAPVLPPVKDAELFSLS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ +G G + ++ TG +I L + + + +
Sbjct: 70 AVFIT--AQQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + LV S+ T+PI + + S F L +S
Sbjct: 128 FFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F +
Sbjct: 188 LSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEEVWASA 247
>gi|292669765|ref|ZP_06603191.1| flagellar protein required for flagellar formation [Selenomonas
noxia ATCC 43541]
gi|292648562|gb|EFF66534.1| flagellar protein required for flagellar formation [Selenomonas
noxia ATCC 43541]
Length = 260
Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 105/247 (42%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + L + R+ ++ P I R+ A+A ++VL P + +
Sbjct: 3 LYELLQGHIAAFLLTLTRISGIFLISPFFGSMNIAPFFRVGIALAMTVVLFPVIDRLGVV 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
++ + ELF+G + G + + + G V+ +G + + +
Sbjct: 63 TAPETIIMFAVAAVGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQ 122
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ S + + ++ L V + HH + ALV+S+ +P+ +I N F+
Sbjct: 123 IPLIGSFLYNLAVIILLVTNGHHMIIAALVESFRAVPLAGMEPNLSIALLLANFTGGIFV 182
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
++++ P F ++ N+ +G+L++ +PQ+ I+ + P + +G + L + I V
Sbjct: 183 TGMKIAMPITFAILLTNVGLGILSRTMPQMNIFVVGIPMQLMIGIVVLSMIIPFYVLFLD 242
Query: 241 HSFLYGF 247
F +
Sbjct: 243 VLFNEMY 249
>gi|83814762|ref|YP_446684.1| flagellar biosynthetic protein FliR [Salinibacter ruber DSM 13855]
gi|294508620|ref|YP_003572679.1| flagellar biosynthetic protein FliR [Salinibacter ruber M8]
gi|83756156|gb|ABC44269.1| flagellar biosynthetic protein FliR [Salinibacter ruber DSM 13855]
gi|294344949|emb|CBH25727.1| flagellar biosynthetic protein FliR [Salinibacter ruber M8]
Length = 258
Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 55/245 (22%), Positives = 112/245 (45%), Gaps = 2/245 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M++ ++ + L+ RV ++ P IP++VR+ ++ + L F +
Sbjct: 1 MSLLDTEYILRVLLVFVRVSGLMLAAPFFQQKTIPVRVRVLASVVLAYSLAGFATGPLP- 59
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
++ + + +V+VE G V G R+ + F G+++ + L+L + +
Sbjct: 60 EHVTHDVGFMLVVLVEAGTGLVMGFTARIIFWAVSFAGTIMGYQMALSLAQTYNPISGTS 119
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
PL ++ LLA + D HH + AL +S+ +P+G G + + F
Sbjct: 120 SNPLGQILSYTFLLAFLLADGHHFLLRALAQSFEVVPLGGAELSGAG-PPMLGWMGDFFR 178
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +RL++PFL + +I++G+ +LVPQ ++ +S P + +G + I+ V F
Sbjct: 179 LAVRLAAPFLVILFLTDIALGIFARLVPQANLFTLSLPAKLLVGIGIFLVFIQGAVPFFP 238
Query: 241 HSFLY 245
F
Sbjct: 239 SLFGE 243
>gi|206561838|ref|YP_002232603.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia
J2315]
gi|198037880|emb|CAR53824.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia
J2315]
Length = 260
Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 108/241 (44%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P++V++ A ++V+ P L D+ F
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHAAVPVRVKIGLAAFMALVVAPTLGAMPDVTVFSAP 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + + +G G +++ ++ G I ++GL T S A +
Sbjct: 71 GIWILV--TQFLIGVAMGFTMQLVFAAVEAAGDFIGLSMGLGFATFFDPHTSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA +D H Q+F AL S+ ++P+ +L + + F + L L+
Sbjct: 129 FLNAVAMLAFLAVDGHLQMFAALAASFQSLPVSGDLLHAPGWRTLATFGAVVFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ + P + +G L + L + +V SH F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPFVSHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|121596082|ref|YP_987978.1| flagellar biosynthetic protein FliR [Acidovorax sp. JS42]
gi|120608162|gb|ABM43902.1| flagellar biosynthetic protein FliR [Acidovorax sp. JS42]
Length = 256
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + P SM IP++ R+ A ++ L + +
Sbjct: 11 AWLSPVLWPFLRVLALFTSAPVFSMRVIPVRTRIGLAFLVAVCAQAVLPEQPVISLNSRE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + V+ ++ +G G +R+ ++ G +I +GLN + + + + +
Sbjct: 71 A--AGAVVQQVGIGLAMGFAVRLVFAAVELAGEIIGLQMGLNFASFFDPASNAQVSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G I +L VI+ H V A+VKS+ + P+G + + F L ++
Sbjct: 129 FFGNISMLLFVVINGHLMVLMAVVKSFDSFPVGGNFLQAIGQMRLHELGASLFSSALWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+++++ PQ+ IY + P + +G L + ++ ++
Sbjct: 189 LPMIALLLFVNLTLGIISRVAPQMNIYAVGFPVTLTVGMLGITATLPMLEQPMLALLQQS 248
>gi|241763643|ref|ZP_04761693.1| flagellar biosynthetic protein FliR [Acidovorax delafieldii 2AN]
gi|241367118|gb|EER61484.1| flagellar biosynthetic protein FliR [Acidovorax delafieldii 2AN]
Length = 256
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + + P SM IPM+V++ A ++ L + +
Sbjct: 11 AWLSPILWPFLRVLAVFTVAPVFSMRAIPMRVKVGLAFLVALCAQAVLTNQPVISVNGRE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A V ++ +G G +R+ ++ G +I +GLN + + + + +
Sbjct: 71 A--LGAVAQQVTVGLAIGFAVRLVFSAVELAGELIGLQMGLNFASFFDPASNAQVSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G + L VI+ H V A+VKS+ + P + + F L ++
Sbjct: 129 FFGHMATLLFVVINGHLMVLMAVVKSFDSFPADGSFLQALGQMHLHELGASLFSSALWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + N+++G+++++ PQ+ IY + P + +G L + ++ ++
Sbjct: 189 LPMIALLTFVNLTLGIISRVAPQMNIYAVGFPVTLTVGLLGIAATLPMLEQPVLTLMQQA 248
>gi|330808230|ref|YP_004352692.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376338|gb|AEA67688.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 260
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + RV + +M +P + +P +VRL FA+A ++V+ P L +
Sbjct: 12 SSWVASFVLPLFRVTAVLMSMPVFGTTLVPRRVRLYFALAITVVIAPGLPPMPSVHALDL 71
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A LV ++ +G + G ++++ G +IS +G+ + + ++ + +
Sbjct: 72 SA--LMLVAEQILIGTLMGFSLQLFFQAFVVAGQIISIQMGMAFASMVDPTNGVTTAVIG 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L ++ H VF L +S+ T+P+G L N F L + L
Sbjct: 130 QFLTMLVTLLFLAMNGHLVVFEVLTESFTTMPVGSALLV-NHFWEIAGKLGWVLGAAMVL 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + +V NI+ G++ + PQ+ I+ I P ++ LG + +S+ I+ Q+ +
Sbjct: 189 VLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLILTLGMVIFWISLGDILNQYQPLAIQ 248
Query: 246 GF 247
Sbjct: 249 AL 250
>gi|39995533|ref|NP_951484.1| flagellar biosynthesis protein FliR [Geobacter sulfurreducens PCA]
gi|39982296|gb|AAR33757.1| flagellar biosynthesis protein FliR [Geobacter sulfurreducens PCA]
gi|298504534|gb|ADI83257.1| flagellar biogenesis protein FliR [Geobacter sulfurreducens KN400]
Length = 264
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 111/235 (47%), Gaps = 1/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L++ R+ +P +P ++ A ++V P + + + Q +
Sbjct: 14 VAFFTLVMGRMAGIFAAIPIFGGRRVPTPIKALLVFAMTMVCFPIIKEKMP-QLPTDVLS 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L++ E+ +G GLL + ++F G ++S IGL + T S + ++ ++
Sbjct: 73 LGFLMVQEVLVGVSLGLLSLIIFAAVEFAGQIVSVQIGLTIVTEFDPSQGGQLSIMSIIL 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L + HH ALV+SY +P+G G + V + F++ +RL++P
Sbjct: 133 EMLATLLFLSLGMHHIFIGALVQSYDVLPLGAWHMSGALLQFIVTTIGEVFVLAVRLAAP 192
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + ++ +G++ + PQ+ ++F+S P IG+G + L LS+ + ++ F
Sbjct: 193 VMVTLLATSVMLGIMARSFPQMNVFFVSMPLNIGIGFIVLGLSLPLFLHTVQGHF 247
>gi|121997284|ref|YP_001002071.1| flagellar biosynthetic protein FliR [Halorhodospira halophila SL1]
gi|121588689|gb|ABM61269.1| flagellar biosynthetic protein FliR [Halorhodospira halophila SL1]
Length = 263
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+G+ ++ P +P+QVR+ +A +I +LP + + +
Sbjct: 10 AWVGTFMYPLMRIGAAALVAPVFGNDMVPLQVRVFIGVALTIAVLPAVGEVPPVDPLSPD 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + E+ +G G+++ + G I+ A+GL T + ++ ++
Sbjct: 70 G--LLIAVQEILVGLTIGMVLALALNTAVIAGESIALAMGLGFATMVDPQTGMSVPVISQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ I L + H + L S+ +PIG+ + ++F + + ++
Sbjct: 128 LLLTIVTLLFLAVGGHLMLIQLLADSFSAVPIGEIVLDRDVFWGVAAWGTQMYAGAVLIA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL-CLSIEIIVYQFSHSFLY 245
P + +V N+S+G++ + PQ+ ++ + P I +G + + L + + + + +
Sbjct: 188 LPLVTVLLVINLSLGVMTRAAPQMNVFSVGLPLTILVGGVLMPILVLPALPARMAMMWSE 247
Query: 246 GF 247
+
Sbjct: 248 AY 249
>gi|304438442|ref|ZP_07398382.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304368525|gb|EFM22210.1| flagellar biosynthetic protein FliR [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 260
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 104/247 (42%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + L++ RV ++ P I + R+ A+A +I+L P +
Sbjct: 3 LYELLQGHIAVFLLMLVRVSGIFLISPFFGSMNISIYFRVGTALAITILLFPVVDGLGTP 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
N + + ELF+G + G + + + G V+ +G + + +
Sbjct: 63 YVPENVIMFGVTALGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQ 122
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ S + + ++ L + HH + ALV+S+ +PI ++ N T F+
Sbjct: 123 IPLIGSFLYNLAVIVLLATNGHHMILAALVESFRVVPIAGMEGNLSLAMLIANFTGTIFL 182
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
++++ P F ++ N+ +G+L++ +PQ+ I+ + P + +G L + I V
Sbjct: 183 TGMKIAMPITFAILLTNVGLGILSRTMPQMNIFVVGIPMQLMIGITVLSMIIPFYVLFLD 242
Query: 241 HSFLYGF 247
F +
Sbjct: 243 VLFNEMY 249
>gi|1066865|gb|AAB81321.1| fliR [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 264
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLRVRALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|222530121|ref|YP_002574003.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor bescii
DSM 6725]
gi|312621586|ref|YP_004023199.1| flagellar biosynthetic protein flir [Caldicellulosiruptor
kronotskyensis 2002]
gi|222456968|gb|ACM61230.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor bescii
DSM 6725]
gi|312202053|gb|ADQ45380.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
kronotskyensis 2002]
Length = 260
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 2/233 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL++ R+ ++ P IP ++ FA S++++ + N Y
Sbjct: 15 FFLVLARMSGLFIVSPIFGRRNIPAYFKIGFAFFLSLLVVSTYRFSYSAP--SNLLEYIF 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E +G + G + + + G +I AIG + + + L + + +
Sbjct: 73 VVIKEFIVGLLIGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEVQVPLLGNFLYLY 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L+ + D HH + A++ SY +PIG E +F F+I + +S P L
Sbjct: 133 MLVVFFGTDAHHLLIRAVIYSYKLVPIGYEGFRREFTWNFFRFFSELFLIGVEISLPILM 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ +I + +L++ VPQ+ ++ + P I +G L L + +
Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVIIFPFMNKMIFVLID 245
>gi|260438788|ref|ZP_05792604.1| flagellar biosynthetic protein FliR [Butyrivibrio crossotus DSM
2876]
gi|292808777|gb|EFF67982.1| flagellar biosynthetic protein FliR [Butyrivibrio crossotus DSM
2876]
Length = 258
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 49/234 (20%), Positives = 105/234 (44%), Gaps = 2/234 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI+ R+ S + P +M+ P + +L A S+++ + D + + Y+
Sbjct: 14 FLLILVRIASFVYTAPFFNMANTPQRTKLGLAFFISLIVFTLVPDR--TLEYSSILEYAI 71
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV+ E +G + G V + F G++I + IGL++ + + T +L
Sbjct: 72 LVIKESVVGLLLGFSCMVCVQTITFAGNIIDSNIGLSMASEYDPTLRDQTTVSGTLYYYT 131
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L L V + + A+V +Y IPI +++SS V ++ F+I R++ P
Sbjct: 132 VFLLLMVSGLYQFLISAIVDTYTIIPINGLSVNPSLYSSVVTLVSDYFIIGFRIALPVFV 191
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ N +G+L K+ Q+ ++ + I G + + +++ ++ + +
Sbjct: 192 SLLIVNCVLGILAKVASQLNMFAVGIQIKILAGLVIMFVTVGLLPQIANFIYQN 245
>gi|90423032|ref|YP_531402.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris
BisB18]
gi|90105046|gb|ABD87083.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris
BisB18]
Length = 256
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 123/238 (51%), Gaps = 1/238 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L+ R+ + +ML+PG + IP++++L A+ ++V+LP + +
Sbjct: 10 ALAAAFMLVFARIAAMVMLMPGFGETNIPVRIKLAIALVLTLVILPLHRSDYQVD-MTSL 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ +G V G RV LQ GSVI+ +GL TS+ + + +
Sbjct: 69 TPLIVLMLHEIVIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTSVDPTQGQQGAVIGN 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++GL L+ D HH V AL +SY G+ ++ G++ S F I ++LS
Sbjct: 129 FLTLLGLTLLFATDTHHLVIAALNESYRIFSPGEFMSSGDVASLATRAFAAAFKIGMQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+PFL F +VFNI +G+L +L+PQ+ +YF+ P I G L + +++ F F+
Sbjct: 189 APFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFAGFLIFGAVLATMMHTFLDYFI 246
>gi|146307832|ref|YP_001188297.1| flagellar biosynthesis protein FliR [Pseudomonas mendocina ymp]
gi|145576033|gb|ABP85565.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina ymp]
Length = 258
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 107/242 (44%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L + R+ + +M++P + +P +VRL A+A S+VL+P L +
Sbjct: 10 SGWVGQFLLPLFRIAAMLMVMPIIGTQLVPNRVRLYLALAISVVLVPTLPPMPQVD--AL 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L++ ++ +G + G +++++ G +I+ +GL + + ++ ++ L
Sbjct: 68 SLRSLLLILEQVLIGAMFGFILQLFFHLFAVAGQIIAMQMGLGFASMVDPTNGVSVPVLG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L I+ H V L +S+ ++P GQ L G+ + L L L
Sbjct: 128 QFMLMLVTLLFLAINGHLVVLEVLAESFVSLPPGQGLMIGHYWE-LAGKLGWVIGAGLLL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + +V N++ G++ + PQ+ I+ I P + +G + + + F
Sbjct: 187 TLPMVTALLVINLAFGVMTRAAPQLNIFSIGFPLTLAMGLVIFWIGLSDFGSLFQALASE 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|114332027|ref|YP_748249.1| flagellar biosynthetic protein FliR [Nitrosomonas eutropha C91]
gi|114309041|gb|ABI60284.1| flagellar biosynthetic protein FliR [Nitrosomonas eutropha C91]
Length = 266
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L + R+ + + P L S IP+QV+L A+ +I++ P L +
Sbjct: 11 GWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPPLPQIDPGSGV 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G G IR+ ++ G + +GL T S +
Sbjct: 71 GPIVLL--QQIIIGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQVQLVGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G++ L ID H QV L +S+ +PIG + F++ VN F + L L+
Sbjct: 129 FYGLLATLLFLAIDGHLQVIAVLAQSFTILPIGADGMNVTSFTTLVNWGAEIFTLGLHLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ N+++G+L + PQ+ I+ + P +G+G L + ++ + F
Sbjct: 189 LPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPVLTQMFQES 248
Query: 247 F 247
F
Sbjct: 249 F 249
>gi|332994109|gb|AEF04164.1| flagellar biosynthesis protein FliR [Alteromonas sp. SN2]
Length = 259
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 95/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L L R+ + + GLS IP QVR + +++++P +
Sbjct: 10 QFLADLMLPFMRISGLFVAMIGLSAQSIPPQVRALLGIMLTLIIMPVVPPAPVDDLVNLG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + +L +G G + + G +I+ GL + + + + +
Sbjct: 70 TFILGI--QQLLIGVAIGFVSMMVLNTFVLAGQIIAMQTGLGFASIVDPVNGINVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L W +D H + + +V S+ PIG+ G F + F+ + LS
Sbjct: 128 FYLILATLLFWTLDGHLAMIHMIVLSFHAFPIGEAWWTGEQFREIAHWGGWMFVSAITLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N++ G++ K PQ+ I+ I +G L + ++++ F +L
Sbjct: 188 LAPIVSLLIVNLAFGVMTKAAPQLNIFSIGFSIAQVMGLLIIWITLDNFTAHFETQWLRA 247
>gi|117919802|ref|YP_868994.1| flagellar biosynthesis protein FliR [Shewanella sp. ANA-3]
gi|117612134|gb|ABK47588.1| flagellar biosynthetic protein FliR [Shewanella sp. ANA-3]
Length = 265
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 95/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S + RV S +M++ + P +VRL A+ ++ + P L D + F
Sbjct: 10 QTIASYMWPLFRVTSMLMVMVVFGATTTPTRVRLLLAVTITLAIAPVLPPVKDAELFSLS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ +G G + ++ TG +I L + + + +
Sbjct: 70 AVFIT--AQQIIIGVAMGFVTQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + LV S+ T+PI + + S F L +S
Sbjct: 128 FFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F +
Sbjct: 188 LSAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFEEVWASA 247
>gi|331269330|ref|YP_004395822.1| flagellar biosynthetic protein FlhB [Clostridium botulinum
BKT015925]
gi|329125880|gb|AEB75825.1| flagellar biosynthetic protein FlhB [Clostridium botulinum
BKT015925]
Length = 594
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 100/227 (44%), Gaps = 1/227 (0%)
Query: 19 VGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+ S + ++P P V++ F + S +++P + D + N ++E+
Sbjct: 1 MFSFVEVVPVFFPKGTPNVVKIMFTVILSFMIIPGI-DYSSMININGNLQLIMYCLIEIT 59
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
G G + + +++ G+ + +G + T + + T + L+ L+ +
Sbjct: 60 TGLTFGFVTNICFSCIRYAGAFMDLQVGFAMMTMFDPNSNSNVTLIERLLYWFSLIVFTI 119
Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198
+D + ++S+ I IG+ + N +N+ F + +R++ P + I+ ++
Sbjct: 120 VDGPRMIIKIFIESFNVIHIGKFILNQNSAMHVINVFIKYFQLGIRIAIPIVLIIILTDL 179
Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++GL+ K VPQ+ I + P I LG L LS+ +I SF
Sbjct: 180 TMGLVAKTVPQLNIMILGMPVKIILGLSVLGLSLPVIFNIIISSFDN 226
>gi|134294168|ref|YP_001117903.1| flagellar biosynthetic protein FliR [Burkholderia vietnamiensis G4]
gi|134137325|gb|ABO53068.1| flagellar biosynthetic protein FliR [Burkholderia vietnamiensis G4]
Length = 260
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + +PM+V++ A ++V+ P L + F +
Sbjct: 11 GWLTAFLWPFVRMLALVATAPLVGHGAVPMRVKIGLAAFMALVVAPTLGAMPGVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G G + + ++ G I ++GL T + A +
Sbjct: 71 GIWI--VVTQFLIGVSMGFTMHLVFAAVEAAGDFIGLSMGLGFATFFDPHSNGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA +D H QVF AL S+ T+P+ EL + + T F + L L+
Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALAASFQTLPVSAELLHAPGWHTLAAFGVTVFQMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ I P + +G L + L I +V SH F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMIPNLVPFVSHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|148256776|ref|YP_001241361.1| flagellar biosynthesis protein FliR [Bradyrhizobium sp. BTAi1]
gi|146408949|gb|ABQ37455.1| Flagellar biosynthetic protein fliR [Bradyrhizobium sp. BTAi1]
Length = 255
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 1/238 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L R+G+ +MLLPGL IP++++L A+ ++++LP +
Sbjct: 10 TLAAVFMLAFARIGAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLHRQAYQVD-LQAL 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +++ E+ +G V G RV LQ GSVI+ +GL T++ + + +
Sbjct: 69 SPLLVMMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGN 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++G+ L+ D HH V AL SY G+ + G++ S F I L+LS
Sbjct: 129 FLTMLGVTLLFSTDSHHLVIAALSDSYKIFAPGEVIPSGDVASLATRAFAAAFKIGLQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+PFL F +VFNI +G+L +L+PQ+ +YF+ P I +G L L + ++ F F
Sbjct: 189 APFLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFGLVLAAMMGTFLGYFE 246
>gi|126175116|ref|YP_001051265.1| flagellar biosynthesis protein FliR [Shewanella baltica OS155]
gi|153001440|ref|YP_001367121.1| flagellar biosynthesis protein FliR [Shewanella baltica OS185]
gi|160876165|ref|YP_001555481.1| flagellar biosynthesis protein FliR [Shewanella baltica OS195]
gi|304409947|ref|ZP_07391566.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183]
gi|307302340|ref|ZP_07582098.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175]
gi|125998321|gb|ABN62396.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155]
gi|151366058|gb|ABS09058.1| flagellar biosynthetic protein FliR [Shewanella baltica OS185]
gi|160861687|gb|ABX50221.1| flagellar biosynthetic protein FliR [Shewanella baltica OS195]
gi|304351356|gb|EFM15755.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183]
gi|306914378|gb|EFN44799.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175]
gi|315268361|gb|ADT95214.1| flagellar biosynthetic protein FliR [Shewanella baltica OS678]
Length = 265
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 94/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV S +M++ + P +VRL AMA + + P L + F
Sbjct: 10 QTIAAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ +G G + ++ TG +I L + + + +
Sbjct: 70 AVFIT--AQQIIIGVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + LV S+ T+PI + + + + F L +S
Sbjct: 128 FFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALADWGSYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G L L++ ++ F +
Sbjct: 188 ISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHFDEVWAAA 247
>gi|317048611|ref|YP_004116259.1| flagellar biosynthetic protein FliR [Pantoea sp. At-9b]
gi|316950228|gb|ADU69703.1| flagellar biosynthetic protein FliR [Pantoea sp. At-9b]
Length = 262
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + P LS IP +V++ A+ + +L+P L ++ +
Sbjct: 11 HWVSQFFWPMVRLLALFASAPVLSEKSIPNRVKIGLAVLTTWILMPLLP---PVETTLFT 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L++ ++ +G GL ++ ++ G VI +GL+ T L L
Sbjct: 68 AAGFWLLLQQILIGVGLGLTMQFAFGAVRMAGEVIGLQMGLSFATFFDPGSRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ +L + H + LV S+ T+PI N F + V F+ + L+
Sbjct: 128 ILDMLAMLLFLTFNGHLWLISMLVDSFHTMPISDHPLNANAFMALVKAAGLIFLNGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ + P + +G L L L + ++ H F
Sbjct: 188 LPLIVLLLTLNMALGLLNRVTPQLSVFVVGFPITLTVGILSLGLMMPLLAPFCEHLFSEV 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|212639549|ref|YP_002316069.1| flagellar biosynthesis protein FliR [Anoxybacillus flavithermus
WK1]
gi|212561029|gb|ACJ34084.1| Flagellar biosynthesis pathway, component FliR [Anoxybacillus
flavithermus WK1]
Length = 259
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 101/243 (41%), Gaps = 6/243 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + LI RV S + +P S +P ++ FA S ++ L
Sbjct: 8 TYVPTFLLIFARVASFFVTMPLFSYRNVPNVHKIGFAFFISWLMFFSLDPKP----LDID 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y L++ E+ +G + GL+ + +Q G I +G + + +
Sbjct: 64 GTYMMLLIKEVLVGLLIGLVAFIIMSAIQIAGGFIDFQMGFAIANVIDPQTGAQSPLMGQ 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLR 184
+ I L L ++ HH + + SY IP+ ++FGN I V + Q F+I L+
Sbjct: 124 YLYTIALFFLLAVNGHHMLLDGIFYSYQFIPLDHLVSFGNEQIAEQVVRLFQAMFVIALQ 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ P + + ++++G++ + VPQ+ I+ I P I + + + + F
Sbjct: 184 MAIPIVGCLFLVDVALGIVARTVPQMNIFVIGLPVKIIVSFVLFVIVFSSMFAVTKQLFE 243
Query: 245 YGF 247
+ F
Sbjct: 244 FAF 246
>gi|84514804|ref|ZP_01002167.1| Flagellar protein FliR [Loktanella vestfoldensis SKA53]
gi|84510963|gb|EAQ07417.1| Flagellar protein FliR [Loktanella vestfoldensis SKA53]
Length = 275
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 2/237 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
M+ FL R+ + + P + IP+QVR+ ++A + + + +
Sbjct: 25 FMLVFFLHTLRLSAFFLSAPFFGAAAIPVQVRVIVSVAIAFGFYGLI--DVPDPQNLPFL 82
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ ++E+ +G GL + + TG I+ + GL M + ++
Sbjct: 83 SMIEVALIEVVIGLSLGLAFTIAFSAVALTGEKIAASAGLGFAAQMDPNSGGQTPVISQF 142
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + A +D H + + SY +P+GQ F + + F I +L
Sbjct: 143 LNLFAIAAFLSLDGHLHMIGLIRMSYEVLPLGQPFKFSAFITGGLAAAGHMFTIASQLML 202
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
P + ++ NI++G++ + PQ+ ++ P I + L +S +
Sbjct: 203 PVVSILLLANITVGVVTRSAPQLNLFSFGFPLTILTCFVALYVSTAPFASGIAEMIE 259
>gi|204931027|ref|ZP_03221853.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204320071|gb|EDZ05276.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 264
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAIQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|218549275|ref|YP_002383066.1| flagellar biosynthesis protein FliR [Escherichia fergusonii ATCC
35469]
gi|218356816|emb|CAQ89444.1| flagellar export pore protein [Escherichia fergusonii ATCC 35469]
Length = 267
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + I P LS +P + +L + ++ + P L +
Sbjct: 16 QWLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPMLPPH---DVPIFS 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G G ++ ++ G +I +GL+ T + + L L
Sbjct: 73 YAAVWVAIQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 132
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 133 ILDMLVLLLFLTFNGHLWLISILVDTFHTLPIGGEPLNSNAFLALTRAGGLIFLNGLMLA 192
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G + + +I H F
Sbjct: 193 LPVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEV 252
Query: 247 F 247
F
Sbjct: 253 F 253
>gi|217972628|ref|YP_002357379.1| flagellar biosynthesis protein FliR [Shewanella baltica OS223]
gi|217497763|gb|ACK45956.1| flagellar biosynthetic protein FliR [Shewanella baltica OS223]
Length = 265
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 94/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV S +M++ + P +VRL AMA + + P L + F
Sbjct: 10 QTITAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ +G G + ++ TG +I L + + + +
Sbjct: 70 AVFIT--AQQIIIGVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + LV S+ T+PI + + + + F L +S
Sbjct: 128 FFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALADWGSYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G L L++ ++ F +
Sbjct: 188 ISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHFDEVWAAA 247
>gi|238927447|ref|ZP_04659207.1| flagellar biosynthesis protein FliR [Selenomonas flueggei ATCC
43531]
gi|238884729|gb|EEQ48367.1| flagellar biosynthesis protein FliR [Selenomonas flueggei ATCC
43531]
Length = 260
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/247 (18%), Positives = 104/247 (42%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + L++ R ++ P IP+ R+ A++ ++VL P +
Sbjct: 3 LYELLQGHIAVFLLMLVRTSGIFLISPFFGSMNIPIFFRVGTALSMTVVLFPVVDGLGTP 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
N ++ + ELF+G + G + + + G V+ +G + + +
Sbjct: 63 YVPENLIMFALTAVGELFIGWLIGFVAYISFAAITMAGKVMDMQVGFAIVNVVDPTSGQQ 122
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ S + + + L + HH + ALV+S+ +PI ++ N T F+
Sbjct: 123 IPLIGSFLYNLAAIILLATNGHHMILAALVESFRAVPIAGMEGNVSLALLIANFTGTIFL 182
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
++++ P F ++ N+ +G+L++ +PQ+ I+ + P + +G L + I V
Sbjct: 183 TGMKIAMPITFAILLTNVGLGILSRTMPQMNIFVVGIPLQLMIGITVLSMIIPFYVLFLD 242
Query: 241 HSFLYGF 247
F +
Sbjct: 243 VLFNEMY 249
>gi|88813213|ref|ZP_01128453.1| Flagellar biosynthesis pathway, component FliR [Nitrococcus mobilis
Nb-231]
gi|88789535|gb|EAR20662.1| Flagellar biosynthesis pathway, component FliR [Nitrococcus mobilis
Nb-231]
Length = 258
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 99/242 (40%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ RV + ++ P S IP+++R+ + ++ +LP + + L
Sbjct: 10 AWLGQFLWPFIRVSAVLLTAPLFSNILIPVRLRVLLGVGLTVAVLPAVGNVPQLDPLSPE 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ +G GLL+ + + G +S +GL T + ++ + ++
Sbjct: 70 G--VLVAGQQVLIGAAIGLLLAMAFQAVAIAGETLSITMGLGFATMISPQTGVSSSVISQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I+ +L + H + L +S+ T+PI G + V F + L+
Sbjct: 128 FLLILAMLLFLAVGAHLMLIQLLAESFRTLPIAASGLGGQDVYALVGWAGEMFAGGVLLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGS-LFLCLSIEIIVYQFSHSFLY 245
P + ++ N+ IG++ + PQ+ I+ + P + G + L + + + + +
Sbjct: 188 LPAVAVLLIVNLIIGVMTRTAPQMNIFSVGLPLTLLAGFVVVLIILLPALPEHMTDLWRS 247
Query: 246 GF 247
F
Sbjct: 248 AF 249
>gi|167736441|ref|ZP_02409215.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 14]
Length = 263
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 1/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VN 65
+ + R+ + + + P P++V++ A ++V+ P L + V
Sbjct: 11 GWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPPMPPMPVATVF 70
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A +++ + +G G +++ ++ G +I ++GL T S A +
Sbjct: 71 SAQGVWIIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSSGATPVMG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ + +LA D H QVF ALV S+ +P+ +L + + V F + L L
Sbjct: 131 RFLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAIFEMGLLL 190
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ N+++G+LN+ PQI I+ + P + +G L + L ++ F
Sbjct: 191 ALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPFVGRLFDT 250
Query: 246 G 246
G
Sbjct: 251 G 251
>gi|170722842|ref|YP_001750530.1| flagellar biosynthesis protein FliR [Pseudomonas putida W619]
gi|169760845|gb|ACA74161.1| flagellar biosynthetic protein FliR [Pseudomonas putida W619]
Length = 258
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 105/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + RV + +M +P +P ++RL A+A ++V++P L + R
Sbjct: 11 TWVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYAAVAITVVIVPALPPLPEFDPLSLR 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G + G +++ G +I+ +G+ + + ++ + ++
Sbjct: 71 G--LLLCGEQIIVGALFGFSLQLLFQAFVIAGQIIAIQMGMAFASMVDPANGVNVAVVSQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + V++ H VF L +S+ T+P+G L N F L F L L
Sbjct: 129 FMTMLVSVLFLVMNGHLVVFEVLTESFTTLPVGNALVV-NHFWEMAGRLSWVFGAGLLLI 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V NI+ G++ + PQ+ I+ I P + LG + + ++ +
Sbjct: 188 LPAIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADVLSHYQALASEA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|120598262|ref|YP_962836.1| flagellar biosynthesis protein FliR [Shewanella sp. W3-18-1]
gi|146293660|ref|YP_001184084.1| flagellar biosynthesis protein FliR [Shewanella putrefaciens CN-32]
gi|120558355|gb|ABM24282.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1]
gi|145565350|gb|ABP76285.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32]
gi|319427059|gb|ADV55133.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens 200]
Length = 265
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 94/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S + RV S +M++ + P +VRL AMA + + P L + F
Sbjct: 10 QTIASYMWPLFRVASMLMVMVVFGAATTPARVRLLLAMAITFAIAPVLPPVENADLFSLS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ +G G + ++ TG +I L + + + +
Sbjct: 70 AVFIT--AQQIIIGVAMGFVSQMVMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + LV S+ T+PI + + S F L +S
Sbjct: 128 FFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRSLAEWGSYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G L L L++ ++ F +
Sbjct: 188 ISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLLILWLTLTPVMAHFDEVWAAA 247
>gi|254491753|ref|ZP_05104932.1| flagellar biosynthetic protein FliR [Methylophaga thiooxidans
DMS010]
gi|224463231|gb|EEF79501.1| flagellar biosynthetic protein FliR [Methylophaga thiooxydans
DMS010]
Length = 260
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 105/241 (43%), Gaps = 1/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
I+ + R+ + +M+ P S ++I + R+ A+A SIV++P + + + ++
Sbjct: 10 GILGAYLWPFFRIAAMVMVAPIFSSNFISQRSRILMAVAISIVIVPNIPVQVPQVDALS- 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A ++ ++ +G G ++++ G +I+ +GL + + + + ++
Sbjct: 69 AEGLLIIAHQILIGACMGFMLQLLFNAFIVAGQIIAMQMGLGFASMVDPQNGVMVPVISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ L I+ H + + +S+ T+PI F V + + ++
Sbjct: 129 FYLVFITLIFVSINGHLILIQVMSESFVTLPIAATGLSPVDFRDIVAQASWMYAAGVIIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N++ G+L++ PQI + I P I LG + + +++ + + Y
Sbjct: 189 LPAIGSLMMVNLAFGILSRAAPQISPFSIGFPMTIILGFVVMLITLPNVAGHLVNMSDYM 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|319787088|ref|YP_004146563.1| flagellar biosynthetic protein FliR [Pseudoxanthomonas suwonensis
11-1]
gi|317465600|gb|ADV27332.1| flagellar biosynthetic protein FliR [Pseudoxanthomonas suwonensis
11-1]
Length = 264
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ +M +P + +P+++R+ A A ++ L P L +
Sbjct: 16 GMIGTVMWTMLRTGALLMAMPLIGTRAVPLRLRVLVAGALAMALAPMLPKPPEFAGLDAA 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V EL +G G +R+ + G +IS +GL+ + +
Sbjct: 76 TVLG--VARELAVGVTMGFCLRLVFEAGAYAGELISHGMGLSFAQMNDPLRGTSSGVVAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRL 185
I L + D H V LV+SY +PIG ++ ++ V + L L
Sbjct: 134 WFYIAFGLLFFTSDGHLAVITMLVRSYQALPIGAAWVDAAAGLATPVELFSAVLRGGLGL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G+L K P + + P + G L L + I F
Sbjct: 194 ALPLMVAMLATNLTFGVLAKAAPSLHPVQLGLPVAVLTGLLLLSVLAGEIARPVQALFDT 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|296157444|ref|ZP_06840279.1| flagellar biosynthetic protein FliR [Burkholderia sp. Ch1-1]
gi|295892216|gb|EFG71999.1| flagellar biosynthetic protein FliR [Burkholderia sp. Ch1-1]
Length = 260
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 107/240 (44%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P L +P++V++ A +I++ P L + F
Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQVTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G+ +++ + TG + +GL T S + L+S
Sbjct: 71 GVWI--IVNQFLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDSQASSSSQVLSS 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +L VID H Q+ AL+ ++ ++P+ + + + N T F L LS
Sbjct: 129 YMNTIAMLVFLVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGSTVFSAGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P + +G L L L ++ F F G
Sbjct: 189 LPVVVALLITNLALGILNRAAPQIGVFQIGFPLTMLIGMLLLQLMTPNMIPFFMRLFDVG 248
>gi|205352325|ref|YP_002226126.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205272106|emb|CAR36959.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326627375|gb|EGE33718.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 264
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAILLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|91785624|ref|YP_560830.1| flagellar biosynthesis protein FliR [Burkholderia xenovorans LB400]
gi|91689578|gb|ABE32778.1| Flagellar biosynthesis protein FliR [Burkholderia xenovorans LB400]
Length = 260
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P L +P++V++ A +I++ P L F
Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPIRVKIGLAAFVTIIVAPTLGALPQFTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G+ +++ + TG + +GL T S + L+S
Sbjct: 71 GVWI--IVNQFLIGIALGMTMQIVFQAISATGDFVGLGMGLGFATFFDSQASSSSQVLSS 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +L VID H Q+ AL+ ++ ++P+ + + + N T F L LS
Sbjct: 129 YMNTIAMLVFLVIDGHLQMISALLATFQSVPVSANILGAPGWRTLANFGGTVFSAGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P I +G L L L ++ F F G
Sbjct: 189 LPVVVALLITNLALGILNRAAPQIGVFQIGFPLTILIGMLLLQLMTPNMIPFFMRLFDVG 248
>gi|462612|sp|P34202|FLIR_PECCC RecName: Full=Flagellar biosynthetic protein fliR; AltName:
Full=Flagellar biosynthetic protein mopE
gi|397347|emb|CAA51478.1| mopE [Pectobacterium carotovorum]
Length = 261
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 100/240 (41%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + I P + I +V++ + ++++ P+L V
Sbjct: 12 WVSQFFWPFVRILALISTAPVFNERAIGNRVKIGLGVLITLLVAPYLPLNTTPIFSVAG- 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G GL +++ ++ G +I +GL T + +
Sbjct: 71 --VWLLIQQILIGVTLGLSMQLAFAAIRHAGELIGLQMGLAFATFFDPTGGPNMQVVARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I+ +L D H + L S+ T+PI + F + F+ L L+
Sbjct: 129 LNILAILLFLTFDGHLWMISLLADSFYTLPISANPIISHAFLALARAGGLIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++G+LN++ PQ+ I+ + P + +G + L L + +I H F F
Sbjct: 189 PIITLLLTINLALGMLNRVAPQLSIFVVGFPITLTVGIMTLGLLLPLIPPFAEHLFSEVF 248
>gi|198244152|ref|YP_002215105.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197938668|gb|ACH76001.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
Length = 264
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLTMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|261855326|ref|YP_003262609.1| flagellar biosynthetic protein FliR [Halothiobacillus neapolitanus
c2]
gi|261835795|gb|ACX95562.1| flagellar biosynthetic protein FliR [Halothiobacillus neapolitanus
c2]
Length = 258
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 99/241 (41%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S ++ RV + +M++P +P + R+ A+ FS+++ P L +
Sbjct: 10 GWVGSYVWVLVRVAALLMVVPIFGARGVPKRWRILAALVFSLIIAPTLPPVPTIDPLSVA 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV ++ +G G ++ + G ++ +GL ++ + ++ ++
Sbjct: 70 G--ILLVAQQIIIGVTMGFVLGLIVSSFVVAGESMALGMGLGFAQTVDPQNGVSVPIVSQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ L +D + L S+ +PI F V Q+ F+ + ++
Sbjct: 128 FLTVVATLLFISLDGPALIVKMLADSFVWLPIAPVGLSPETFWRVVGFGQSMFINAILIA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G++ + PQ+ I+ I P + +G + +S V H
Sbjct: 188 LPVIISLLMVNLAMGVITRAAPQLNIFSIGFPATLLIGFFLILVSSPTWVPILEHFLQQT 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|74055046|gb|AAZ95851.1| FliR [Aeromonas hydrophila]
Length = 274
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 93/239 (38%), Gaps = 2/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S+ + RV +M++ P ++R+ A+A + ++ P L ++ F
Sbjct: 19 EWLSSILWPLARVSGLLMVMAVFGSRLTPARIRIGLALALTFMIAPLLPPMPKIELFSIG 78
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +L +G GL+ + G VI+ L T + + + +
Sbjct: 79 SFLVL--AQQLLIGIALGLMTQFLMESFVMAGQVIAMQTSLGFATLVDPMNGQSAPVVGQ 136
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + +V S+ ++P+ S V L + L ++
Sbjct: 137 FYLMLATLVFLAVDGHLIMLRMVVLSFDSLPVSDAGLTLPAIRSLVGFLGVMYQASLVMA 196
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ ++ N + G++ + PQ+ I+ I + G L L L+I + F +
Sbjct: 197 LSAIIALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLLILWLTIGGFLGHFDSMWER 255
>gi|16765319|ref|NP_460934.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56413106|ref|YP_150181.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62180556|ref|YP_216973.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161613450|ref|YP_001587415.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167993556|ref|ZP_02574650.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234154|ref|ZP_02659212.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168239221|ref|ZP_02664279.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244832|ref|ZP_02669764.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168259732|ref|ZP_02681705.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168462477|ref|ZP_02696408.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823024|ref|ZP_02835024.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444159|ref|YP_002041246.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449212|ref|YP_002046032.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472341|ref|ZP_03078325.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194736717|ref|YP_002115015.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197265429|ref|ZP_03165503.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362032|ref|YP_002141669.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|207856506|ref|YP_002243157.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224583520|ref|YP_002637318.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238912446|ref|ZP_04656283.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|20141401|sp|P54702|FLIR_SALTY RecName: Full=Flagellar biosynthetic protein fliR
gi|16420516|gb|AAL20893.1| putative flagellar biosynthetic protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56127363|gb|AAV76869.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62128189|gb|AAX65892.1| putative flagellar biosynthetic protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161362814|gb|ABX66582.1| hypothetical protein SPAB_01167 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402822|gb|ACF63044.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407516|gb|ACF67735.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458705|gb|EDX47544.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194712219|gb|ACF91440.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195634515|gb|EDX52867.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197093509|emb|CAR58970.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197243684|gb|EDY26304.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288058|gb|EDY27445.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|205328394|gb|EDZ15158.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331896|gb|EDZ18660.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336365|gb|EDZ23129.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205340657|gb|EDZ27421.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350805|gb|EDZ37436.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206708309|emb|CAR32612.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224468047|gb|ACN45877.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261247147|emb|CBG24970.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993970|gb|ACY88855.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158495|emb|CBW18005.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912971|dbj|BAJ36945.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224626|gb|EFX49689.1| Flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322616974|gb|EFY13882.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618213|gb|EFY15105.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625884|gb|EFY22703.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626336|gb|EFY23146.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632751|gb|EFY29496.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639093|gb|EFY35786.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640409|gb|EFY37065.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647230|gb|EFY43729.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649885|gb|EFY46307.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655530|gb|EFY51838.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660308|gb|EFY56546.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662989|gb|EFY59196.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668174|gb|EFY64333.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674067|gb|EFY70161.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675581|gb|EFY71655.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683008|gb|EFY79024.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686702|gb|EFY82680.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715032|gb|EFZ06603.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323130260|gb|ADX17690.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323195410|gb|EFZ80590.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198062|gb|EFZ83179.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204466|gb|EFZ89472.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207556|gb|EFZ92504.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211005|gb|EFZ95865.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217541|gb|EGA02260.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220726|gb|EGA05170.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226687|gb|EGA10884.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231563|gb|EGA15676.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236006|gb|EGA20085.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240576|gb|EGA24619.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245468|gb|EGA29468.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247586|gb|EGA31537.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253951|gb|EGA37775.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255521|gb|EGA39282.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262119|gb|EGA45682.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266242|gb|EGA49732.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270649|gb|EGA54090.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|332988870|gb|AEF07853.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 264
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|312884899|ref|ZP_07744589.1| flagellar biosynthesis protein FliR [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367376|gb|EFP94938.1| flagellar biosynthesis protein FliR [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 260
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ S F R+G+ +M++ ++ +VRL +A + ++P + ++ A
Sbjct: 11 WIASYFWPYTRIGAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPVIPAAPQNIELLSFA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ V+ ++ +G G + + G ++ L + + ++ L L
Sbjct: 71 GFIT-VLEQILIGVAMGTVTQFLIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ ++P+G F L F L +S
Sbjct: 130 FMFLATMFFLATDGHLKMITFVVMSFQSLPVGVGALTNVDFRELALWLGIMFQFALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L I + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYLIAGLYNHYDLLWHEG 248
>gi|229591838|ref|YP_002873957.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens SBW25]
gi|229363704|emb|CAY51086.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens SBW25]
Length = 258
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 108/242 (44%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + R+ + +M +P + +P ++RL FA+A ++VL+P L +
Sbjct: 10 STWVASFILPLFRITAMLMAMPVFGTTLVPRRIRLYFAVAITVVLVPGLPPMPPVNALDL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G + G ++++ G +IS +G+ + + ++ ++ +
Sbjct: 70 SA--LMLIAEQVLIGTLLGFSLQLFFQAFVIAGQIISIQMGMGFASMVDPTNGVSAAVIG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L ++ H F L +S+ T+P+G L N F V L L L
Sbjct: 128 QFLTMLVTLLFLAMNGHLVAFEVLTESFTTLPVGSGLVV-NHFWEVVGRLGWVLGASLLL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + +V NI+ G++ + PQ+ I+ I P + LG + + I+ Q+
Sbjct: 187 VLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADILNQYQPLATD 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|197250835|ref|YP_002146042.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|200389554|ref|ZP_03216165.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|197214538|gb|ACH51935.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|199601999|gb|EDZ00545.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 264
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + R+ + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLRILALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|162138518|ref|YP_487378.2| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris
HaA2]
Length = 255
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 70/234 (29%), Positives = 122/234 (52%), Gaps = 1/234 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ RVG+ +MLLP L S IP +++L A+ ++++LP + + +
Sbjct: 13 AAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQVD-MSSLTPL 71
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L++ E+ +G V G RV LQ GSVI+ +GL T++ + + + +
Sbjct: 72 LVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLT 131
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I+G+ L+ D HH V AL SY G+ LN G++ + +F I ++L++PF
Sbjct: 132 ILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAASFKIGMQLAAPF 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L F +VFNI +G+L +L+PQ+ +YF+ P I +G + + ++ F F
Sbjct: 192 LVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGTFLAYF 245
>gi|255099431|ref|ZP_05328408.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
difficile QCD-63q42]
Length = 516
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 101 ISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ 160
+ +GL++ + T +++L+ L+ + +D HH + + S+ IPIG+
Sbjct: 1 MDQQMGLSMINMFDPNSMTQTTLIDNLMNWTALMIFFNMDGHHVLIRGIRYSFELIPIGK 60
Query: 161 ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220
NI +N+ F+ +++ P + ++ + +GL+++ VPQ+ + + P
Sbjct: 61 PFVDNNI-DYIINIFVQCFLTGFKIAIPIVLCLLMADFILGLISRSVPQLNVMIVGMPLK 119
Query: 221 IGLGSLFLCLSIEIIVYQFSHSFLY 245
I +G +SI +IV Q SH
Sbjct: 120 ILVGIALFIISIPLIVNQISHLLSQ 144
>gi|86146124|ref|ZP_01064450.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218708835|ref|YP_002416456.1| flagellar biosynthesis protein FliR [Vibrio splendidus LGP32]
gi|85836071|gb|EAQ54203.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218321854|emb|CAV17831.1| Flagellar biosynthetic protein fliR [Vibrio splendidus LGP32]
Length = 260
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 91/240 (37%), Gaps = 1/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F R+ + +M++ ++ ++RL +A + ++P + ++
Sbjct: 10 EWLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSF 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V ++ +G G + + G ++ L + + ++ L
Sbjct: 70 QGFLT-VFEQIVIGVAMGFVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L ++ + D H ++ +V S+ T+PIG + L F L +S
Sbjct: 129 LFMLLATMFFLETDGHLKMLQLVVFSFKTLPIGSGSLTSVDYRELALWLGIMFKTALAMS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + ++
Sbjct: 189 LSGIIALLTINLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYILGGLFSHYELFWIQT 248
>gi|160896099|ref|YP_001561681.1| flagellar biosynthetic protein FliR [Delftia acidovorans SPH-1]
gi|160361683|gb|ABX33296.1| flagellar biosynthetic protein FliR [Delftia acidovorans SPH-1]
Length = 256
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + + P S IPM++++ A ++ P L D + +
Sbjct: 11 AWLSPVLWPFLRVLAMFSVAPVFSQRVIPMRLKIGLAFLVAVCAQPVLGDQPVIGINSPQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A ++ ++ +G G +R+ ++ G V+ +GLN + + + + +
Sbjct: 71 A--LGTLIQQVGVGLAVGFAVRLVFAAVEVAGEVVGLQMGLNFASFFDPTTNAQLSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L VI+ H V A++KSY P+ M F ++
Sbjct: 129 FMVQISTLLFIVINGHLLVLMAVLKSYEAFPVDGSFLQAINQMRLHEMGAAVFASAFWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+ +G+++++ PQ+ IY + P + +G L ++ ++ G
Sbjct: 189 LPMVAMLLFVNLVLGIISRVAPQMNIYAVGFPVTLTVGLTGLMATLPLLEQPLVALLQRG 248
>gi|302343744|ref|YP_003808273.1| flagellar biosynthetic protein FliR [Desulfarculus baarsii DSM
2075]
gi|301640357|gb|ADK85679.1| flagellar biosynthetic protein FliR [Desulfarculus baarsii DSM
2075]
Length = 258
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 1/236 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
M LI+ R + + LLP + IP V+ +MA ++ L P + L +
Sbjct: 12 MHFLLILTRCSALVALLPFFGSANIPDTVKAGLSMALAVFLHPIVKIDPAL-FPTGLDSF 70
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L EL +G + G +R+ +Q G + +G ++ + + +
Sbjct: 71 LILAFGELMIGAILGFAVRLLFSAVQIMGHLAGFQMGFSVANVLDPMGGEQVSVIGQFCY 130
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+I +L + + HH F A +S+ +P GQ +F M F + L+L +P
Sbjct: 131 VIAILVFFAVGGHHWFFSAAAESFAIVPPGQFAFSRILFDQLTTMTADMFELALKLGAPV 190
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + ++++G+L K VPQ+ I + P IG+G FL L++ ++ SF
Sbjct: 191 IGVLLAADVAMGVLAKTVPQMNILIVGMPLKIGVGLFFLALTMGFMIVTMGASFRD 246
>gi|212637761|ref|YP_002314286.1| flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3]
gi|212559245|gb|ACJ31699.1| Flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3]
Length = 259
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + + CR+ M++P L SY+P+ VR+ A++ S+++ P L ++
Sbjct: 10 STFIATFWWPFCRIMGAFMVMPFLGSSYVPVMVRILLAISISVLIAPILPPFPEVDAISL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+A + + +L +G + L + + + G+++S +GL + ++ + L
Sbjct: 70 QALFLGI--EQLLVGFMLALFLTIMIHVMSLVGAMMSMQMGLAMAIMNDPANGGSNPILG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ G L +D H LV S+ PIG + + + + F L
Sbjct: 128 QWFLLYGTLLFLALDGHLVALGILVDSFRLWPIGMGVFDLPLM-GLIGRISWIFAASFML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ N++ G+L++ P + ++ + P + +G L + S + ++S L
Sbjct: 187 ALPAVLAMLMVNVTFGVLSRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRYSDLCLD 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|75675329|ref|YP_317750.1| flagellar biosynthesis protein FliR [Nitrobacter winogradskyi
Nb-255]
gi|74420199|gb|ABA04398.1| Flagellar biosynthesis protein FliR [Nitrobacter winogradskyi
Nb-255]
Length = 256
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 1/235 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ RVG+ +MLLPG YIP++V+L A+ + ++LP + + A
Sbjct: 13 AAFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAAYHVD-MQSVAPL 71
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ L++ E+ +G V G RV L GSVI+ +GL TS+ + + + +
Sbjct: 72 AVLLVHEIIIGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQGQQGALMGNFLT 131
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+PF
Sbjct: 132 LLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGAFKIGLQLSAPF 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L F +VFNI +G+L +L+PQ+ +YF+ P I +G + + ++ + +
Sbjct: 192 LVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFMIFAAVLASMMGTYMDYLI 246
>gi|332305671|ref|YP_004433522.1| flagellar biosynthetic protein FliR [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173000|gb|AEE22254.1| flagellar biosynthetic protein FliR [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 259
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M + L R+ + + GLS +P VR + ++++LP + + F
Sbjct: 10 QFMGDMLLPFMRISGMLATMVGLSAKTVPTTVRALLTLFITLIILPVIPPVQVDEVFSVG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV+ +L +G G + + G V++ GL + + + + +
Sbjct: 70 TFM--LVIQQLIIGISLGFISTMVLNTFVLAGQVVAMQTGLGFASIVDPVNGINVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L W +D H + +V S+ P+G+ F + F+ + LS
Sbjct: 128 FYLILATLLFWALDGHLAMIRMVVMSFTAFPVGEAWLQPEQFREIAHWAGWMFISAVTLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N++ G++ K PQ+ I+ + +G + + ++++ Y F +
Sbjct: 188 LAPIVSLLIVNLAFGVMTKAAPQLNIFSLGFSIAQIMGLVIIWITMDNFTYHFEVQWDRA 247
>gi|148266207|ref|YP_001232913.1| flagellar biosynthetic protein FliR [Geobacter uraniireducens Rf4]
gi|146399707|gb|ABQ28340.1| flagellar biosynthetic protein FliR [Geobacter uraniireducens Rf4]
Length = 261
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/235 (21%), Positives = 110/235 (46%), Gaps = 1/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+V R+ +P +P++V+ M +++L P + I +
Sbjct: 13 LTLFSLVVGRMAGLFAAIPLFGSKSVPVRVKAAVIMVMALLLYPVIRTQIP-PLPSDSIS 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
S LV+ E +G G++ + ++F G ++ +G+++ + + + L
Sbjct: 72 LSLLVVRETLIGLTIGIISQAIFAAVEFCGQIVGMQMGISMASLFDPNTQANVPTVALLQ 131
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
GI+ +L + HH A+V+SY IP+G G + + F++ ++LS+P
Sbjct: 132 GILAMLLFLSLGVHHIFIRAIVESYRVIPVGAWHMSGGLMQFIITTTGAIFILAIKLSAP 191
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + ++++G++ + PQ+ I+ +S P IG+G L L LS+ + ++F
Sbjct: 192 IMVALLATSVALGIMARSFPQMNIFMVSMPLNIGIGFLALGLSLLTFLRTLENAF 246
>gi|145297439|ref|YP_001140280.1| lateral flagellar biosynthetic protein LfiR [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850211|gb|ABO88532.1| lateral flagellar biosynthetic protein LfiR [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 260
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/236 (20%), Positives = 103/236 (43%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + ++P IP QVRL FA S+++ P L + + F
Sbjct: 14 AWLGQWWWPFIRIATAFWVMPVFGDGRIPPQVRLLFAFIISLLIAPMLKEMPVVDPFSTG 73
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L + +L G + GL +++ + + G ++S +GL + S+ + ++
Sbjct: 74 A--LVLTVEQLLFGLLFGLCVQMLFMIMTMAGQILSMQMGLAMAVMNDPSNGDSAPIVSQ 131
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ I L ++ H LV+S + P G L+ + + + L L+
Sbjct: 132 LMLIFCSLLFLGLNGHLVTLDVLVQSLRSWPPGSSLDLLD-MKGVIGLFGWCIGAALILT 190
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ N++ G++N+ P + I+ + P + LG + + +SI + ++
Sbjct: 191 LPAVVAMLMVNLTFGVMNRTAPSLNIFSLGFPMTLLLGLVTMAISISGVPARYLDL 246
>gi|15615003|ref|NP_243306.1| flagellar biosynthesis protein FliR [Bacillus halodurans C-125]
gi|10175060|dbj|BAB06159.1| flagellar protein required for flagellar formation [Bacillus
halodurans C-125]
Length = 258
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 7/244 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L+ R+ + +M +P S IP ++ A+ + +L L I +
Sbjct: 6 QLLPMFLLVFVRMLAFLMTMPLFSYRNIPAMFKVGIALFLAWILTFSLEPEI----ILFD 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y L+M E+ +G + GL+ V +Q G+ I IG + + + S
Sbjct: 62 GTYVILIMKEVLVGLMVGLIAMVLLYAIQAAGAFIDVKIGFLIANIVDPQTGAQSPLIGS 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIML 183
+ LL + + HH + + SY IP+ Q N+ L T F+I
Sbjct: 122 YLYTFALLFMLATNGHHLLIDGMYYSYQFIPLNQPFLNVSDENMIELIATTLNTMFIIAF 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+++ P + + ++++G++++ VPQ+ ++ + P I +G L + + + S+ F
Sbjct: 182 QMAFPLVGSLFLVDVALGMVSRAVPQMNVFVVGMPLKILVGLPLLMIFMGVFFMSVSYLF 241
Query: 244 LYGF 247
Sbjct: 242 ERML 245
>gi|330445378|ref|ZP_08309030.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489569|dbj|GAA03527.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 260
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 93/240 (38%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M + ++ ++RL A+A + ++PFL ++ A
Sbjct: 11 WLANYFWPFTRISSMMMAMTFFGARFVSPKIRLYLALAITFAVMPFLPKVPQDIELLSLA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + GL+ + T G ++ L + + ++ L
Sbjct: 71 GFIITGQQIIIG-VAMGLVTQFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPVLGQF 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +L D H ++ A+V S+ T+P+G + + F L ++
Sbjct: 130 YMFLAILLFLATDGHLEMLNAVVLSFKTLPVGTAMLGQQDYYELAGWFGHMFKAGLNMAL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N+S G++ + PQ+ I+ + + + LG + IV Q+ + GF
Sbjct: 190 AGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLLGLAISWFIVLGIVPQYEALWQVGF 249
>gi|83747849|ref|ZP_00944882.1| HrcT [Ralstonia solanacearum UW551]
gi|207724593|ref|YP_002254990.1| hrp protein hrct [Ralstonia solanacearum MolK2]
gi|207739228|ref|YP_002257621.1| hrp protein hrct [Ralstonia solanacearum IPO1609]
gi|83725496|gb|EAP72641.1| HrcT [Ralstonia solanacearum UW551]
gi|206589815|emb|CAQ36776.1| hrp conserved protein hrct [Ralstonia solanacearum MolK2]
gi|206592601|emb|CAQ59507.1| hrp conserved protein hrct [Ralstonia solanacearum IPO1609]
Length = 282
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 83/232 (35%), Gaps = 4/232 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ + +LP + + R +I++ + L +N A L E
Sbjct: 30 VRIMTLFAILPATNDQMLTGIARNGVVYTLAILVA--AGQPVGLAEHLNVAQLFILTCKE 87
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+FLG G + G++I G N TP+ + + + +
Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGYNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + +S+ P+G L N + + + F ++L++P + +
Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGASLPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTLL 207
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + IGLL++ ++ +S P + L + + + Q + Y
Sbjct: 208 LIDAGIGLLSRAADKLEPASLSQPIKGAVALLMVMALVTALSTQVKGTLTYA 259
>gi|312962261|ref|ZP_07776753.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens WH6]
gi|311283598|gb|EFQ62187.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens WH6]
Length = 261
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 107/242 (44%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + RV + +M +P + +P ++RL FA+A ++V++P L +
Sbjct: 13 STWVASFILPLFRVTAMLMAMPVFGTTLVPRRIRLYFAVAITVVIVPGLPPMPAVNALDL 72
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L+ ++ +G + G + ++ G +IS +G+ + + ++ ++ +
Sbjct: 73 SA--LMLIAEQVLIGAMLGFSLSLFFQAFVIAGQIISIQMGMGFASMVDPTNGVSAAVIG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L ++ H F L +S+ T+P+G L N F V L L L
Sbjct: 131 QFLTMLVTLLFLAMNGHLVAFEVLTESFTTLPVGSGLVV-NHFWEVVGRLGWVLGASLLL 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + +V NI+ G++ + PQ+ I+ I P + LG + + I+ Q+
Sbjct: 190 VLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMWIFWVGMADILNQYQPLATD 249
Query: 246 GF 247
Sbjct: 250 AL 251
>gi|283832655|ref|ZP_06352396.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC
29220]
gi|291072329|gb|EFE10438.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC
29220]
Length = 261
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 99/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + I P LS IP +V+L + +IV+ P + +
Sbjct: 11 QWLNLYFWPLLRILALISTAPILSERAIPKRVKLGLGVIITIVIAPSIP---PADVPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
M ++ +G G ++ ++ G +I +GL+ T L L
Sbjct: 68 IGALWQAMQQILIGIALGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
LI ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 128 LIDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGGNPVNSNAFLALARAGSLIFINGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I F
Sbjct: 188 LPVMTLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCERLFSEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|324114207|gb|EGC08180.1| flagellar biosynthetic protein FliR [Escherichia fergusonii B253]
gi|325497692|gb|EGC95551.1| flagellar biosynthesis protein FliR [Escherichia fergusonii ECD227]
Length = 262
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + I P LS +P + +L + ++ + P L +
Sbjct: 11 QWLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPMLPPH---DVPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G G ++ ++ G +I +GL+ T + + L L
Sbjct: 68 YAAVWVAIQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 128 ILDMLVLLLFLTFNGHLWLISILVDTFHTLPIGGEPLNSNAFLALTRAGGLIFLNGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G + + +I H F
Sbjct: 188 LPVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEV 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|296330852|ref|ZP_06873327.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674370|ref|YP_003866042.1| flagellar export machinery protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151857|gb|EFG92731.1| flagellar biosynthesis protein FliR [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412614|gb|ADM37733.1| component of the flagellar export machinery [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 259
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 94/239 (39%), Gaps = 6/239 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P +P R+ FA +++ + L+
Sbjct: 7 LFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTIDKPPSLEI---DG 63
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y L E +G GL+ + +Q GS I +G ++ + +
Sbjct: 64 QYMLLTFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQF 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN---IFSSFVNMLQTTFMIMLR 184
I + LL + ++ HH + + S+ I + Q F+I +
Sbjct: 124 IYTMALLFMLSVNAHHLLLDGIFYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQ 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+S+P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ + F
Sbjct: 184 MSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAISFIMLIVCMSVMFVVVRNVF 242
>gi|254251036|ref|ZP_04944354.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa
AUO158]
gi|124893645|gb|EAY67525.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa
AUO158]
Length = 260
Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 107/241 (44%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + + +P + ++ A ++++ P L + F
Sbjct: 11 GWLTAFLWPFVRMLALVATAPVVGHASVPARAKIGVAAFMALIVAPTLGAMPGVTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+++ +G G +++ ++ G I ++GL T S A +
Sbjct: 71 GIWI--VVMQFLIGAAMGFTMQIVFAAVEAAGDYIGLSMGLGFATFFDPHSSGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA +D H QVF AL S+ T+P+ L + + T F + L L+
Sbjct: 129 FLNAVAMLAFLAVDGHLQVFAALAASFQTLPVSAALLHAPGWRTLAAFGATVFEMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ I P + +G L + L + +V SH F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVTMLVGLLLVQLMVPNLVPFVSHLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|312135836|ref|YP_004003174.1| flagellar biosynthetic protein flir [Caldicellulosiruptor
owensensis OL]
gi|311775887|gb|ADQ05374.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
owensensis OL]
Length = 260
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 2/224 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL++ R+ + P IP ++ FA S+++ T + + N Y
Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKVGFAFFLSMIVFTAYNFTYSIPD--NVVEYVF 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E +G + G + + + G +I AIG + + + L + + +
Sbjct: 73 VVIKEFIIGLLIGYISYMIFSAILLAGQIIDNAIGFGMANVVDPMSEVQVPLLGNFLYLY 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L+ + D HH + A+ SY +PIG SF+ F+I + LS P L
Sbjct: 133 MLVVFFGTDAHHLLIRAIFYSYKLVPIGYGGFKTEFAWSFLRFFSELFLIGVELSLPILM 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
++ +I + +L++ VPQ+ ++ + P I +G L L + + +
Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPVKIAIGFLVLVIILPFM 236
>gi|237731998|ref|ZP_04562479.1| flagellar biosynthesis protein FliR [Citrobacter sp. 30_2]
gi|226907537|gb|EEH93455.1| flagellar biosynthesis protein FliR [Citrobacter sp. 30_2]
Length = 261
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 100/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + I P LS IP +V+L + ++V+ P + + +
Sbjct: 11 HWLNLYFWPLLRVLALISTAPILSERAIPKRVKLGLGLMITVVIAPSIPA---VDVPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
M ++ +G G ++ ++ G +I +GL+ T L L
Sbjct: 68 VGALWQAMQQILIGIALGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
LI ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 128 LIDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGGNPVNSNAFLALARAGSLIFLNGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G + + +I F
Sbjct: 188 LPVMTLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPLIAPFCERLFSEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|322833208|ref|YP_004213235.1| flagellar biosynthetic protein FliR [Rahnella sp. Y9602]
gi|321168409|gb|ADW74108.1| flagellar biosynthetic protein FliR [Rahnella sp. Y9602]
Length = 261
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 100/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + I P S +P +V+L M + ++ P L + +
Sbjct: 11 GWLSMYFWPLLRILALISTAPITSEKSVPNRVKLGLGMMITFLIAPSLP---PVDTPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L M ++ +G G+ +++ ++ G ++ +G++ T S+ L L
Sbjct: 68 TPALWLAMQQIMIGTALGITMQLAFAAIRMAGEIMGLQMGISFATFYDPSNRLNTPLLAQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L + H + L S+ T+PI F + F + L+
Sbjct: 128 FLNLLAVLLFLSFNAHLWLISLLADSFHTLPISHNPVNAEGFMAVAKAGSIVFSGGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G L + L + ++ H F
Sbjct: 188 LPIVTLLLTLNMALGLLNRVTPQLSVFVIGFPLTLSIGILAISLMMPMLAPFSEHLFSEI 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|145298358|ref|YP_001141199.1| flagellar biosynthesis protein FliR [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851130|gb|ABO89451.1| flagellar biosynthetic protein FliR [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 265
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 92/239 (38%), Gaps = 2/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S+ + RV +M++ P ++R+ A+A + ++ P L ++ F
Sbjct: 10 EWLSSILWPLARVSGLLMVMAVFGSRLTPARIRIGLALALTFMIAPLLPPMPKVELFSVG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +L +G GL+ + G VI+ L T + + + +
Sbjct: 70 SFLVLT--QQLLIGIALGLMTQFLMESFVMAGQVIAMQTSLGFATLVDPMNGQSAPVVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + +V S+ T+P+ S V L + L ++
Sbjct: 128 FYLMLATLVFLAVDGHLIMLRMVVLSFETLPVSDAGLTLPAIRSLVGFLGIMYQASLVMA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ ++ N + G++ + PQ+ I+ I + G L L+I + F +
Sbjct: 188 LSAIVALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLFILWLTIGGFLGHFDSMWER 246
>gi|312126837|ref|YP_003991711.1| flagellar biosynthetic protein flir [Caldicellulosiruptor
hydrothermalis 108]
gi|311776856|gb|ADQ06342.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
hydrothermalis 108]
Length = 260
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 2/233 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL++ R+ + P IP ++ FA S++++ + + N Y
Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIF 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
V+ E +G + G + + + G +I AIG + + + L + + +
Sbjct: 73 AVIKEFIVGLLVGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFLYLY 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L+ + D HH + A+V SY +PIG E SF+ F+I + +S P L
Sbjct: 133 MLVVFFGTDAHHLLIRAVVYSYKLVPIGHESFRSEFTWSFLRFFSELFLIGVEISLPILM 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ +I + +L++ VPQ+ ++ + P I +G L L + + +
Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVIILPFMNKMIFVLID 245
>gi|193071154|ref|ZP_03052078.1| flagellar biosynthetic protein FliR [Escherichia coli E110019]
gi|192955549|gb|EDV86028.1| flagellar biosynthetic protein FliR [Escherichia coli E110019]
Length = 261
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FTLWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTQNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|148976241|ref|ZP_01812965.1| putative flagellar biosynthetic protein FliR [Vibrionales bacterium
SWAT-3]
gi|145964335|gb|EDK29590.1| putative flagellar biosynthetic protein FliR [Vibrionales bacterium
SWAT-3]
Length = 260
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 3/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L+ R ++ P IP++V+L FA FS++L P + + F
Sbjct: 11 QWLGVLWWPFVRFTGLFLIAPFFGDKAIPVRVKLLFAFIFSLLLAPMVKEVPPFNPFSID 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+L G + G + ++ G IS +GL + ++ ++ +
Sbjct: 71 TLLFS--FYQLIFGFLIGFAVMIFFTIFSIAGQAISMQMGLAMAVMNDPANGVSIAIIGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ I +L +D H V +S+ P+ F N + M+ F L ++
Sbjct: 129 IMFITSMLLFLSLDGHLVVLLVFKESFEYWPLNSPFPF-NSIEYVLKMVSWMFATGLLVA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ GL+NK P + ++ + P + LG L S+ I + L
Sbjct: 188 VPAIVVMLLSNITFGLMNKAAPSLNVFALGFPMTMLLGLFALMASLTGIGDHYFDLVLE 246
>gi|260598459|ref|YP_003211030.1| flagellar biosynthesis protein FliR [Cronobacter turicensis z3032]
gi|260217636|emb|CBA31937.1| Flagellar biosynthetic protein fliR [Cronobacter turicensis z3032]
Length = 262
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + I P LS I ++V++ A+ +I L P + + +
Sbjct: 11 HWLTLYFWPLLRVLALISTAPILSERAISIRVKIGLALLITIALAPNIPGS---NVPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + ++ +G G ++ ++ G +I +GL+ T L L
Sbjct: 68 LEGLWLGLQQMLIGVAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I ++ +L ++ H + L ++ T+PIG + N F + F+ + ++
Sbjct: 128 FIDMLAMLLFLTVNGHLWLISILADTFYTLPIGGDAINSNAFMALARAGGLIFVNGVMMA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G + L + +I H F
Sbjct: 188 LPMITLLLSLNLALGLLNRMAPQLTVFAIGFPLTLSIGIIVLAALMPLIAPFCEHLFAEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|16760925|ref|NP_456542.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141383|ref|NP_804725.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213025463|ref|ZP_03339910.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213163374|ref|ZP_03349084.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213417180|ref|ZP_03350324.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213424993|ref|ZP_03357743.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213612733|ref|ZP_03370559.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650741|ref|ZP_03380794.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855266|ref|ZP_03383506.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|25346403|pir||AF0753 flagellar biosynthetic protein FliR [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503222|emb|CAD05729.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137010|gb|AAO68574.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 264
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|222833216|gb|EEE71693.1| predicted protein [Populus trichocarpa]
Length = 314
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 95/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + + P S IPM++++ A ++ P L D + +
Sbjct: 69 AWLSPVLWPFLRVLAMFSVAPVFSQRVIPMRLKIGLAFLVAVCAQPVLGDQPVIGINSPQ 128
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A ++ ++ +G G +R+ ++ G V+ +GLN + + + + +
Sbjct: 129 A--LGTLIQQVGVGLAVGFAVRLVFAAVEVAGEVVGLQMGLNFASFFDPTTNAQLSAVAR 186
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L VI+ H V A++KSY P+ M F ++
Sbjct: 187 FMVQISTLLFIVINGHLLVLMAVLKSYEAFPVDGSFLQAINQMRLHEMGAAVFASAFWIA 246
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+ +G+++++ PQ+ IY + P + + L ++ ++ G
Sbjct: 247 LPMVAMLLFVNLVLGIISRVAPQMNIYAVXFPVTLTVXLTGLMATLPLLEQPLVALLQRG 306
>gi|148976425|ref|ZP_01813131.1| flagellar biosynthesis protein R [Vibrionales bacterium SWAT-3]
gi|145964248|gb|EDK29504.1| flagellar biosynthesis protein R [Vibrionales bacterium SWAT-3]
Length = 260
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 92/240 (38%), Gaps = 1/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F R+ + +M++ ++ ++RL +A + ++P + ++
Sbjct: 10 EWLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSF 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V ++ +G G + + G ++ L + + ++ L
Sbjct: 70 QGFLT-VFEQIVIGVAMGFVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L ++ + D H ++ +V S+ T+PIG F L F L +S
Sbjct: 129 LFMLLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLTSVDFRELALWLGIMFKAALAMS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + ++ G
Sbjct: 189 LSGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLLCWYILGGLYSHYELFWMQG 248
>gi|162139929|ref|YP_339328.2| flagellar biosynthesis protein FliR [Pseudoalteromonas haloplanktis
TAC125]
Length = 259
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 99/240 (41%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L + R+ S IM++ GL +P ++++ A+ + V +P L F
Sbjct: 10 QWLSDFLLPLVRISSMIMVMAGLGAKNVPTRIKMGLAIVVTFVAVPMLPPATFTNLFS-- 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+V+ ++ +G G + G +++ GL + + S+ L+ +
Sbjct: 68 FEMILVVIQQMLIGIAIGFASTLLLNTFVLAGQILAMQTGLGFASVVDPSNGLSVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L +V + H + +V S+ +PI + + V F L LS
Sbjct: 128 FYLILATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
L +V N+S G++ + PQ+ I+ I P+ + G + + ++ V QF +L
Sbjct: 188 LAPLTAMLVINMSFGIMTRAAPQLNIFSIGFPFTLVAGLIIIWATLGNFVSQFEFQWLKM 247
>gi|114562372|ref|YP_749885.1| flagellar biosynthesis protein FliR [Shewanella frigidimarina NCIMB
400]
gi|114333665|gb|ABI71047.1| flagellar biosynthetic protein FliR [Shewanella frigidimarina NCIMB
400]
Length = 267
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 99/241 (41%), Gaps = 2/241 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + L R+ S +M++ + P +VRL ++A ++ + P L +++
Sbjct: 9 SQTIAAYLLPFFRISSMLMVMAVFGANTTPARVRLMLSVAITMAVAPILPPIENVELLAL 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + + ++ +G G + + TG +I L + + ++
Sbjct: 69 SSVFV--IAQQILIGVTMGFVTLMVMQTFVLTGQIIGMQTSLGFASMVDPGSGEQTPVVS 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L +D H + LV S+ TIPI + + + + F L +
Sbjct: 127 NFFLLLATLIFLAVDGHLLMIRMLVASFETIPISNQGISIANYRALADWGSFMFGSALTM 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S + ++ N+S G++ + PQ+ I+ I P + G L L L++ I+ F ++
Sbjct: 187 SISAIVALLLINLSFGVMTRASPQLNIFSIGFPVTMVSGLLILWLTLAPIMAHFDEVWMA 246
Query: 246 G 246
Sbjct: 247 A 247
>gi|83589640|ref|YP_429649.1| flagellar biosynthesis protein FliR [Moorella thermoacetica ATCC
39073]
gi|83572554|gb|ABC19106.1| flagellar biosynthetic protein FliR [Moorella thermoacetica ATCC
39073]
Length = 255
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 109/235 (46%), Gaps = 2/235 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL++ R + + P + +P V+ + LL D F + Y+
Sbjct: 10 FFLVLVRTTAFFVTAPFFGIRGVPTMVKAGLGFL--VALLLLPVLPADQPVFNSSWVYAL 67
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
V+ E G G L + +Q G ++ +GL + T ++ + T + I+
Sbjct: 68 AVLNESLAGLALGYLASLIFSAIQMAGQLLDIHMGLAMATLFDPQNAASTTIMGQFFAIL 127
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
GLL + +D HH + AL +S+ +P+G GN+ + V + TF + L++++P +
Sbjct: 128 GLLLFFQLDGHHTLLLALQESFRLLPLGGVHFDGNLLWAVVKLFAGTFALALQIAAPLIA 187
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
++ ++++ L+ + VPQ+ ++ + P +GLG L + + ++ FS+ F
Sbjct: 188 VLLIADLALSLVARTVPQLNVFILGFPLKVGLGLLVMIALLPLLATVFSNIFSQM 242
>gi|89094443|ref|ZP_01167383.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92]
gi|89081335|gb|EAR60567.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92]
Length = 256
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 103/241 (42%), Gaps = 2/241 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ E + + + R+GS M +P L + ++RL A+A + V+ P L +
Sbjct: 6 ILQIEQWVAAFLWPLFRIGSFFMAVPLLGSQLVNARIRLMLALAVTAVIAPMLPEMPAFN 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+Y + ++ +G + G L +V+ G +I+ +GL + ++ ++
Sbjct: 66 GLSVESYLI--IAQQVIVGAMLGFLFQVFYQVFVLGGQMIAMQMGLGFASMTDPANGISV 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
L + ++ ++ H + +V+S+ +P+ + + F F
Sbjct: 124 VMLGQFYLTLIMMIFVALNGHLIMIEIVVRSFEVLPVSLQAIDRDSFMKVALSGTWMFSA 183
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ ++ P + +V N++ G++++ PQ+ I + P+ + LG +++ + Q+
Sbjct: 184 AMLMALPAVTALLVVNMAFGIMSRAAPQLNILAVGFPFTMVLGLFINWVNLGGFLDQYMR 243
Query: 242 S 242
Sbjct: 244 I 244
>gi|17549093|ref|NP_522433.1| Hrp conserved HRCT transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|17431344|emb|CAD18023.1| hrp conserved hrct transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 282
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 79/227 (34%), Gaps = 4/227 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ + +LP + + R A +I++ + L ++ L E
Sbjct: 30 VRIMTLFSILPATNDQMLTGIARNGVVYALAILVA--AGQPVGLAAHLSAGQLFMLTCKE 87
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+FLG G + G++I G N TP+ + + + +
Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + +S+ P+G L N + + + F ++L++P + +
Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTML 207
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ + IGLL + ++ + P + L + + + Q
Sbjct: 208 LIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVKG 254
>gi|153834119|ref|ZP_01986786.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01]
gi|156975418|ref|YP_001446325.1| flagellar biosynthesis protein FliR [Vibrio harveyi ATCC BAA-1116]
gi|148869489|gb|EDL68487.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01]
gi|156527012|gb|ABU72098.1| hypothetical protein VIBHAR_03149 [Vibrio harveyi ATCC BAA-1116]
Length = 260
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 35/239 (14%), Positives = 91/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ ++RL +A + + P + ++
Sbjct: 11 WIANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFR 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MTIAEQIVIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ T+PIG F + L F L +S
Sbjct: 130 FMFLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMASWLGIMFKTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILAGLYSHYELFWAVG 248
>gi|23099028|ref|NP_692494.1| flagellar biosynthesis protein FliR [Oceanobacillus iheyensis
HTE831]
gi|22777256|dbj|BAC13529.1| flagellar protein required for flagellar formation [Oceanobacillus
iheyensis HTE831]
Length = 259
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 105/242 (43%), Gaps = 6/242 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + LI RV + +++P S +P+Q ++ + +I+++ T+D
Sbjct: 9 TLPAFLLIFVRVLAFFVIMPLFSYRSVPVQFKIGISFFLAIIMI----STVDTAGIAVNN 64
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y L++ E+ +G GL+ + +Q G I +G + +
Sbjct: 65 LYIFLIVKEILVGICIGLIAYIIVSAIQVAGGFIDFQMGFAIANVVDPQTGAQSPLTGQY 124
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185
+ II LL L ++ HH + + SY IP+ Q L FG I + T F++ ++
Sbjct: 125 LYIISLLFLLSVNGHHIIIDGIFNSYSYIPLNQFLPFGEESIVQFVLTTFNTMFLVAFQI 184
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + ++++G++ + VPQ+ ++ + P I + + + + + + F
Sbjct: 185 AIPIVGCLFLVDVALGIIARTVPQMNVFVVGLPLKILVSFAAILVFLALYINLAQRLFET 244
Query: 246 GF 247
+
Sbjct: 245 MY 246
>gi|91976175|ref|YP_568834.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris
BisB5]
gi|91682631|gb|ABE38933.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris
BisB5]
Length = 255
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 123/234 (52%), Gaps = 1/234 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ R+G+ +ML P L S IP++++L A+ ++++LP + +
Sbjct: 13 AAFMLVFARIGAMVMLFPTLGESNIPVRIKLSIALGLTLIILPLHRSAYQVD-MSSLTPL 71
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+++ E+ +G V G RV LQ GSVI+ +GL T++ + + + +
Sbjct: 72 LVMMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLT 131
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I+G+ L+ D HH V AL SY G+ L+ G++ + +F I ++L++PF
Sbjct: 132 ILGVTMLFATDSHHLVIQALSDSYKIFAPGELLSSGDVAALATKAFAASFKIGMQLAAPF 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + ++ F + F
Sbjct: 192 LVFGLVFNIGLGILARLMPQMQVYFVGVPLSIAIGFIILAAVLTTMMSTFLNYF 245
>gi|119775420|ref|YP_928160.1| flagellar biosynthesis protein FliR [Shewanella amazonensis SB2B]
gi|119767920|gb|ABM00491.1| flagellar biosynthetic protein FliR [Shewanella amazonensis SB2B]
Length = 262
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 93/240 (38%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ + M++P + P++VRL ++A + + P L + F
Sbjct: 10 ETIKAYTWPLFRISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPMPQGELFALS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G GL+ + TG +I L + L +
Sbjct: 70 SVFIS--AQQVLIGVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSGQQTPVLGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + LV S+ T+P+ + S F L +S
Sbjct: 128 FFLLLATLIFLAVDGHLTMIRMLVMSFDTLPVSMTGITLANYHSLALWGSYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P ++ G L L++ ++ F +
Sbjct: 188 LSAIVALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSHFGEIWEAA 247
>gi|300697474|ref|YP_003748135.1| Hrp conserved hrct protein, type III secretion system inner
membrane protein [Ralstonia solanacearum CFBP2957]
gi|299074198|emb|CBJ53743.1| Hrp conserved hrct protein, Type III secretion system inner
membrane protein [Ralstonia solanacearum CFBP2957]
Length = 282
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 82/232 (35%), Gaps = 4/232 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ + +LP + + R +I++ + L +N L E
Sbjct: 30 VRIMTLFAILPATNDQMLTGIARNGVVYTLAILVA--AGQPVGLAEHLNAGQLFILTCKE 87
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+FLG G + G++I G N TP+ + + + +
Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGYNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + +S+ P+G L + + + + F ++L++P + +
Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGASLPDMSAVAQSFLLQQTDSIFSTAVKLAAPVMMTLL 207
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + IGLL++ ++ +S P + L + + + Q + Y
Sbjct: 208 LIDAGIGLLSRAADKLEPASLSQPIKGAVALLMVMALVTALSTQVKGTLTYA 259
>gi|242280057|ref|YP_002992186.1| flagellar biosynthetic protein FliR [Desulfovibrio salexigens DSM
2638]
gi|242122951|gb|ACS80647.1| flagellar biosynthetic protein FliR [Desulfovibrio salexigens DSM
2638]
Length = 267
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 105/234 (44%), Gaps = 1/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+MS +L + RV + LLP + IP V+ + ++ + P + L +
Sbjct: 11 LMSFYLTLFRVSIVLFLLPFFGGNSIPKTVKAALTIVLTLGIWPHVTFEGSLM-PASPYN 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ +++ E+ LG V G+ + V +Q G++I +G ++ + E +
Sbjct: 70 IALMILGEMVLGLVMGISVHVMFAAIQTGGNLIGVQMGFSMVNVLDPLTGTNEAVTAHFL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +L I+ H + A+V+S+ IP GQ + S +++ + F++ ++++SP
Sbjct: 130 YMCAILVFLSINGHLYLMSAMVESFKYIPPGQIFISSTLTSQIMSISKDLFVLAVKVASP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ V ++ + L++K+ PQ+ + + P I G L L ++
Sbjct: 190 IIATIFVVDLGLALISKMAPQMNVLMLGFPLKILAGFFVLSLVFTVLSLHVGEF 243
>gi|226313052|ref|YP_002772946.1| flagellar biosynthesis protein FliR [Brevibacillus brevis NBRC
100599]
gi|226096000|dbj|BAH44442.1| flagellar biosynthetic protein FliR [Brevibacillus brevis NBRC
100599]
Length = 260
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 98/243 (40%), Gaps = 6/243 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L+ R+ + + P S+ +P Q ++ A +++ L ++
Sbjct: 7 YLPIFMLVFVRMSAFFVTAPFFSIRGVPNQFKIALAFIIAVISFQSLPVQGEIP---MDL 63
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ V+ E +G + G + + + +Q G ++ +GL + + +
Sbjct: 64 TFVMYVIKEALVGVILGYICEMMFIAIQVAGGLMDMQMGLAMANVIDPKTGAYIPVTGNF 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIP---IGQELNFGNIFSSFVNMLQTTFMIMLR 184
I+ +L + ID HH + ++ SY IP + N+ + V T F
Sbjct: 124 KNILAVLYFFSIDGHHMLIRGVISSYQVIPVDIMWAAFGSENVMMTAVKTFLTMFTSAFM 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + + ++S+G++ K VPQ I+ + P + G L L + + + + F
Sbjct: 184 IAAPIVVALFLVDLSLGIIAKSVPQFNIFVVGLPIKLLAGFLLLIVVMPAFLLTLNGLFG 243
Query: 245 YGF 247
F
Sbjct: 244 NMF 246
>gi|312792665|ref|YP_004025588.1| flagellar biosynthetic protein flir [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179805|gb|ADQ39975.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 260
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 2/233 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL++ R+ + P IP ++ FA S++++ + + N Y
Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIF 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E +G + G + + + G +I AIG + + + L + +
Sbjct: 73 VVIKEFIVGLLIGYISYMVFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFFYLY 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L+ + D HH + A+V SY +PIG E SF+ F+I + +S P L
Sbjct: 133 MLVVFFGTDAHHLLIRAVVYSYKLVPIGYESVKREAALSFLKFFSELFLIGVEISLPILM 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ +I + +L++ VPQ+ ++ + P I +G L L + + +
Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVIILPFMNKMIFVLID 245
>gi|312876515|ref|ZP_07736498.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796726|gb|EFR13072.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
lactoaceticus 6A]
Length = 260
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 2/224 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL++ R+ + P IP ++ FA S++++ + + N Y
Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSLLVVTTYRFSYSVP--ANLLEYIF 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E +G + G + + + G +I AIG + + + L + + +
Sbjct: 73 VVIKEFIVGLLIGYISYMIFSAILLAGQIIDNAIGFGMANVIDPMSEIQVPLLGNFLYLY 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L+ + D HH + A+V SY +P+G E SF+ F+I + +S P L
Sbjct: 133 MLVVFFGTDAHHLLIRAVVYSYKLVPLGYESVKKEAALSFLKFFSELFLIGVEISLPILM 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
++ +I + +L++ VPQ+ ++ + P I +G L L + + +
Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGLPIKIAIGFLVLVIILPFM 236
>gi|83594154|ref|YP_427906.1| flagellar biosynthesis protein FliR [Rhodospirillum rubrum ATCC
11170]
gi|83577068|gb|ABC23619.1| Flagellar biosynthesis protein FliR [Rhodospirillum rubrum ATCC
11170]
Length = 253
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 128/239 (53%), Gaps = 1/239 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+G+ +++LPGLS +Y+ + +R+ A+ ++V LP + + N A+
Sbjct: 10 LFHFLLVFVRLGTAMLVLPGLSSTYVSVNIRILLAVTITLVALPTVGAALP-PAPDNTAF 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L+ VE +G G++ + + + F G+++ + GL + + + + + +
Sbjct: 69 LVLLIAVEATIGVFLGMMAQFLLVPVSFAGNIMGFSTGLMMAQAFDPTTAQQSALIAGFL 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
G + ++ ++V HH + A+V SY P GQ + G++ V +L + F + L+L++P
Sbjct: 129 GEVAMVMVFVTGMHHLMIEAVVNSYDAFPPGQMPDTGDMVQLLVTILSSGFRLGLQLAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
F+ + I+FN ++G++ +L+PQ+ + F++ P I G L ++ ++Y F F G
Sbjct: 189 FIIYAIIFNATLGVIARLMPQLNVLFVAMPAQILFGLALLMTTVPFLIYSFLGHFERGL 247
>gi|91792696|ref|YP_562347.1| flagellar biosynthesis protein FliR [Shewanella denitrificans
OS217]
gi|91714698|gb|ABE54624.1| flagellar biosynthetic protein FliR [Shewanella denitrificans
OS217]
Length = 267
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 99/241 (41%), Gaps = 2/241 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + + R+ S +M++ + P +VRL A+AF+ + P L + +++ F
Sbjct: 9 SQTIAAYLWPLFRISSMLMIMAVFGANTTPSRVRLMLAVAFTFAIAPVLPEIKNVELFAF 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A + L ++ +G V G + + TG +I L + + +
Sbjct: 69 SAVFITL--QQILIGAVMGFVTLMLMQTFVLTGQIIGMQTSLGFASMVDPGSGEQTPVVG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L ID H +F +V S+ +IP+ + + F L +
Sbjct: 127 NFFLLLATLIFLSIDGHLLMFRMIVASFESIPVSNQGIEIANYKILAEWGGYMFGAALTM 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S + ++ N+S G++ + PQ+ I+ I P + G L L L++ I+ F +
Sbjct: 187 SMSAIVALLLINLSFGVMTRAAPQLNIFSIGFPVTMVSGLLILWLTLGPIMAHFDEVWYA 246
Query: 246 G 246
Sbjct: 247 A 247
>gi|115523574|ref|YP_780485.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris
BisA53]
gi|115517521|gb|ABJ05505.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris
BisA53]
Length = 256
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 1/226 (0%)
Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77
R+G+ +ML+PG S IP +++L A+ ++++LP + + A L++ E+
Sbjct: 21 RIGTMVMLMPGFGESNIPARIKLSIALGLTLIILPLHRSAYQVD-MTSMAPLIVLMLHEI 79
Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137
+G V G +RV LQ GSVI+ +GL T++ + + + + ++GL L+
Sbjct: 80 VIGIVLGATVRVTLAALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLTLLGLTLLF 139
Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
D HH V AL +SY G+ L G+I + F I ++L++PFL F +VFN
Sbjct: 140 ATDSHHLVIAALNESYRVFSPGELLPSGDIAALATRAFSAAFKIGMQLAAPFLVFGLVFN 199
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
I +G+L +L+PQ+ +YF+ P I +G L L + ++ F F
Sbjct: 200 IGLGVLARLMPQMQVYFVGVPLSIVVGFLILIGVLAAMMGTFMDYF 245
>gi|325917836|ref|ZP_08180015.1| flagellar biosynthetic protein FliR [Xanthomonas vesicatoria ATCC
35937]
gi|325535947|gb|EGD07764.1| flagellar biosynthetic protein FliR [Xanthomonas vesicatoria ATCC
35937]
Length = 263
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A S+VL P L + F +
Sbjct: 16 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLSMVLAPILPPVPEWDGFTAQ 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G ++++ G ++S + GL+ + +
Sbjct: 76 A--VLSIARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG + F+ + L L
Sbjct: 134 WFYIGFGLLFFAANGHLAVISLLVDSYKALPIGTAIPDARAFAEVAPTLFLQIMRGGLTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 194 ALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|37680653|ref|NP_935262.1| flagellar biosynthesis protein FliR [Vibrio vulnificus YJ016]
gi|37199402|dbj|BAC95233.1| flagellar biosynthesis pathway, component FliR [Vibrio vulnificus
YJ016]
Length = 260
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 94/239 (39%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M++ ++ ++RL ++A ++ L+P + + ++
Sbjct: 11 WIANYFWPFTRISSMLMVMTVTGARFVSPRIRLYLSLAITLALMPAIPAVPEDLQLLSFQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GFLTT-FEQIVIGVAMGMVTQFIIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ ++ S+ T+PIG F L F L +S
Sbjct: 130 FMFLSTMFFLATDGHLKMLQLVLFSFKTLPIGSGSLNAVDFRELALWLGIMFKTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + +L G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLICWYILAGLYSHYELYWLQG 248
>gi|84388123|ref|ZP_00991019.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
gi|84377190|gb|EAP94060.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
Length = 260
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 92/240 (38%), Gaps = 1/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F R+ + +M++ ++ ++RL +A + ++P + ++
Sbjct: 10 EWLANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPKEIELLSF 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V ++ +G G + + G ++ L + + ++ L
Sbjct: 70 QGFLT-VFEQIVIGVAMGFVTQFLIQTFVMLGQILGMQSSLGFASMVDPANGQNTPVLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L ++ + D H ++ +V S+ T+PIG F L F L +S
Sbjct: 129 LFMLLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLTAVDFRELALWLGIMFKTALAMS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + ++ G
Sbjct: 189 LSGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLLCWYILGGLFSHYELFWIQG 248
>gi|205373391|ref|ZP_03226195.1| flagellar biosynthesis protein FliR [Bacillus coahuilensis m4-4]
Length = 258
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 99/241 (41%), Gaps = 6/241 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
LI+ RV S + +P S IP Q RL + + ++ +++ V
Sbjct: 8 FSVYLLILMRVASFFVTMPLFSYRTIPAQHRLGLSAILAFLMY----YSVEADPLVIDGL 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y L++ E +G + G + +Q G I +G + + + +
Sbjct: 64 YFLLILKEAMVGLLIGFAAYMIISAIQIAGGFIDFQMGFAIANVVDPQTGMQSPITGQYL 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLS 186
LL L ++ HH + + SY IPI L F N I F+I ++S
Sbjct: 124 YTFALLLLLSVNGHHIMLDGIFHSYQFIPIDSMLPFENESIVLFITTAFSRVFVIAFQIS 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+P + + +I++G++ + VPQ+ I+ + P I + + L L + ++ +F Y
Sbjct: 184 APVVATLFLVDIALGIVARTVPQLNIFVVGFPIKIAVSFIILILVMGSMMIVIQQTFEYM 243
Query: 247 F 247
F
Sbjct: 244 F 244
>gi|220925377|ref|YP_002500679.1| flagellar biosynthetic protein FliR [Methylobacterium nodulans ORS
2060]
gi|219949984|gb|ACL60376.1| flagellar biosynthetic protein FliR [Methylobacterium nodulans ORS
2060]
Length = 254
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 126/242 (52%), Gaps = 1/242 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + + S L RVG+ IML+PG+ + + ++RL FA+ ++VL P + +
Sbjct: 1 MNLLLPGLAASYLLTFARVGTLIMLMPGIGEAVVSPRLRLAFALLVALVLFPAVRPLLPQ 60
Query: 61 QNFVNRAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ +++ E+ +G V GL +R LQ TG++I+ +GL ++ + +
Sbjct: 61 PDGAGAGPRLIGVLIGEVAVGLVLGLSVRAVLAALQTTGTIIAQQLGLAYAMTVDPTAAG 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L + + ++G+ + D HH + SY +P G+ + + F
Sbjct: 121 QQATLGTFLTLLGITLVLAADLHHLAIAGIRDSYALMPPVGVPATGDAADLVIRAVARGF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ +++S+PF+ F I+FN+ +G+L++L+PQ+ ++F++TP I +G + L +I +++ F
Sbjct: 181 ALAVQISAPFIAFGILFNLGLGVLSRLMPQMQVFFVATPASILIGMMVLLATIGVVMGVF 240
Query: 240 SH 241
Sbjct: 241 VD 242
>gi|255021384|ref|ZP_05293432.1| Flagellar biosynthesis protein FliR [Acidithiobacillus caldus ATCC
51756]
gi|254969247|gb|EET26761.1| Flagellar biosynthesis protein FliR [Acidithiobacillus caldus ATCC
51756]
Length = 262
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 104/243 (42%), Gaps = 3/243 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + + F R+ + + P S S +P+QVR+ A S+ + P L +
Sbjct: 10 EHWIGAFFWPFVRILALLSTAPVFSASAVPIQVRVGLAAIISVAIAPALPTLPAVHFLSG 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L++ ++ +G G + + +QF GSVIS +GL + + + L+
Sbjct: 70 AG--LVLLVEQIVIGTALGFAVTLIFSAVQFAGSVISLQMGLGFSSFFDPTTGVQVPTLS 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLR 184
+ + + LL ++ V L++S+ +P+ L + F + +
Sbjct: 128 NFLNLAVLLFFMALNGQLLVLVVLMRSFTVLPVDPNLVVHATAWHVLAAAGAAVFSLGMA 187
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P L + NI++G+L+KL PQ+ ++ + P LIG+G + L L +
Sbjct: 188 IAAPVLGALFLVNIALGVLSKLAPQLNLFVVGFPLLIGVGLIGLYLLAPALELVVRQLLD 247
Query: 245 YGF 247
Sbjct: 248 LAL 250
>gi|163750538|ref|ZP_02157776.1| flagellar biosynthesis protein [Shewanella benthica KT99]
gi|161329693|gb|EDQ00682.1| flagellar biosynthesis protein [Shewanella benthica KT99]
Length = 265
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 95/239 (39%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ S + RV S M++ + P++VR +MA + ++P L ++ F A
Sbjct: 11 TIASYMWPLFRVSSMFMVMVVFGANTTPVRVRALLSMAITFAIVPVLPPVENVALFAASA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L +L +G G + + G +I L + + S + +L
Sbjct: 71 IFITL--QQLLIGISMGFVTLMVMQCFVLAGQIIGMQTSLGFASMVDPSSGQQTPVIGNL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ + +D H + LV S+ TIPI + + F L +S
Sbjct: 129 FLLLTTMIFLAVDGHLVMIRMLVLSFETIPISDQGLSVTSYRLLAEWGGYMFGAALTMSM 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F +
Sbjct: 189 TPIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLVILWLTLTPIMEHFGEVWTSA 247
>gi|302037620|ref|YP_003797942.1| flagellar biosynthetic protein FliR [Candidatus Nitrospira
defluvii]
gi|300605684|emb|CBK42017.1| Flagellar biosynthetic protein FliR, export component [Candidatus
Nitrospira defluvii]
Length = 263
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 93/237 (39%), Gaps = 3/237 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ +++ R+ + + P L+ IPM V+ +VL P + +
Sbjct: 15 FQAFSILLVRIAGIVSVFPILNTRTIPMPVKTGLVATLGLVLAPIIHL---PNLPNDPVL 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ E +G GL +R+ G Q G +I T +G + +
Sbjct: 72 VIAGIGSEFLIGLTIGLAVRLLFSGFQVAGDMIGTQMGFSAIQMFDPMSHQNTPIIAQFQ 131
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+G L ++ H V +A+ SY +P I +++ Q + L+L++P
Sbjct: 132 LTLGSLVFLSLNAHLLVVHAIGMSYEYVPPFGASLSDGIAQDIIHLAQNMLGVALKLAAP 191
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ N + +L + VPQ+ ++ S P IG G L + L++ + F F
Sbjct: 192 VFATLLIVNTVLAILGRAVPQMNVFVTSFPITIGAGFLAMSLAMPFTLLLFEKEFET 248
>gi|238755317|ref|ZP_04616660.1| Flagellar biosynthetic protein fliR [Yersinia ruckeri ATCC 29473]
gi|238706453|gb|EEP98827.1| Flagellar biosynthetic protein fliR [Yersinia ruckeri ATCC 29473]
gi|328496287|gb|AEB21291.1| FliR [Yersinia ruckeri]
Length = 260
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
++ F + RV + I P L+ I +V++ A+ +I++ P L + V
Sbjct: 10 SHLVSQYFWPLVRVLALISTAPVLNEKSINRKVKVGLAVMITILIAPSLP---PIAIPVF 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
++M ++ +G GL ++ ++ G +I +GL+ T S L
Sbjct: 67 SVGAIWVLMQQVLIGIAIGLTMQFAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVLA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ +L ++ H + L S+ T+PI G F + + F+ L L
Sbjct: 127 RLLNLLAMLLFLSLNGHLWMISMLADSFHTLPIQFAPLNGGGFRALTEIGSLIFLSGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G L L L + + H F
Sbjct: 187 ALPMITILLTLNMALGMLNRMTPQLSVFVIGFPLTLTIGMLTLGLIMPALAPYCEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 FF 248
>gi|89098626|ref|ZP_01171508.1| flagellar biosynthesis protein R [Bacillus sp. NRRL B-14911]
gi|89086588|gb|EAR65707.1| flagellar biosynthesis protein R [Bacillus sp. NRRL B-14911]
Length = 260
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 97/238 (40%), Gaps = 7/238 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI RV S +L+P S IP ++ + ++ D F
Sbjct: 8 FPAFLLIFVRVTSFFLLMPLFSYRSIPNTHKIGLGFFLAWIIF----YAADAPAFEINGA 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y L+M E +G V G + + +Q G +I +G + + + +
Sbjct: 64 YYLLIMKEALVGLVIGFISYLILSAIQIAGGLIDFQMGFAIANVIDPQTGAQSPLMGQYL 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRL 185
I L L +++ HH + + SY IP+ Q + + + F+ ++
Sbjct: 124 YTISLFFLLMVNGHHLLIDGIFYSYQAIPLDQPWIPFGDEGMAEYMLRAFNSMFISAFQM 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S P + + ++++G++ + VPQ+ ++ + P IG+ + L + +++Y S F
Sbjct: 184 SVPVVGCLFLVDVALGIVARTVPQLNVFVVGIPLKIGVSFIVLVAVMSVLLYVVSQLF 241
>gi|302872553|ref|YP_003841189.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
obsidiansis OB47]
gi|302575412|gb|ADL43203.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
obsidiansis OB47]
Length = 260
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 2/234 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL++ R+ + P IP ++ FA S++++ N Y
Sbjct: 15 FFLVLARMSGLFIASPIFGRRNIPAYFKIGFAFFLSMIVVTT--YNFSYSVPTNVEEYIF 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E +G + G + + + G +I AIG + + + L + + +
Sbjct: 73 VVIKEFIVGLLIGYISYMIFSAILLGGQIIDNAIGFGMANVIDPMSEIQVPLLGNFLYLY 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L+ + D HH + A+ SY +PIG +F+ F+I + +S P L
Sbjct: 133 MLVMFFGTDAHHLLIRAIFYSYKLVPIGYGGFKTEFTWNFLRFFSELFLIGVEISLPILM 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ +I + +L++ VPQ+ ++ + P I +G L L + +
Sbjct: 193 SMLIVDIILAVLSRAVPQMNVFMVGIPIKITIGFLVLVIIFPFMSKMIFVLIDR 246
>gi|269961632|ref|ZP_06175994.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3]
gi|269833673|gb|EEZ87770.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3]
Length = 260
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/239 (14%), Positives = 91/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ ++RL +A + + P + ++
Sbjct: 11 WIANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFR 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MTIAEQIIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ T+PIG F + L F L +S
Sbjct: 130 FMFLATMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMASWLGIMFKTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILAGLYSHYELFWAVG 248
>gi|117619054|ref|YP_855916.1| flagellar biosynthesis protein FliR [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560461|gb|ABK37409.1| flagellar biosynthetic protein FliR [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 263
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 93/239 (38%), Gaps = 2/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S+ + RV +M++ P +VR+ A+A ++++ P L ++ F
Sbjct: 10 EWLSSIVWPLARVSGLLMVMAVFGSRLTPARVRISLALALTLMIAPLLPPMPKIELFSVG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +L +G GL+ + G +I+ L T + + + +
Sbjct: 70 SFLVL--GQQLLIGVALGLMTQFLMESFVMAGQIIAMQTSLGFATLVDPMNGQSAPVVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + +V S+ T+P+ + L + L ++
Sbjct: 128 FYLMLATLVFLAVDGHLIMLRMVVLSFDTLPVSDSGLSLPSIRDLIGFLGVMYQASLVMA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ ++ N + G++ + PQ+ I+ I + G L L L+I + F +
Sbjct: 188 LSAIVALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLLILWLTIGGFLGHFDSMWER 246
>gi|188496134|ref|ZP_03003404.1| flagellar biosynthetic protein FliR [Escherichia coli 53638]
gi|188491333|gb|EDU66436.1| flagellar biosynthetic protein FliR [Escherichia coli 53638]
Length = 261
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTQNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|219566962|dbj|BAH04993.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
Length = 282
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 79/227 (34%), Gaps = 4/227 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ + +LP + + R A +I++ + L ++ L E
Sbjct: 30 VRIMTLCSILPATNDQMLTGIARNGVVYALAILVA--AGQPVGLAAHLSAGQLFMLTCKE 87
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+FLG G + G++I G N TP+ + + + +
Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + +S+ P+G L N + + + F ++L++P + +
Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTML 207
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ + IGLL + ++ + P + L + + + Q
Sbjct: 208 LIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVKG 254
>gi|27365292|ref|NP_760820.1| flagellar biosynthesis protein FliR [Vibrio vulnificus CMCP6]
gi|320155676|ref|YP_004188055.1| flagellar biosynthesis protein FliR [Vibrio vulnificus MO6-24/O]
gi|27361439|gb|AAO10347.1| flagellar biosynthetic protein FliR [Vibrio vulnificus CMCP6]
gi|319930988|gb|ADV85852.1| flagellar biosynthesis protein FliR [Vibrio vulnificus MO6-24/O]
Length = 260
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 94/239 (39%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M++ ++ ++RL ++A ++ L+P + + ++
Sbjct: 11 WIANYFWPFTRISSMLMVMTVTGARFVSPRIRLYLSLAITLALMPAIPAVPEELQLLSFQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GFLTT-FEQIVIGVAMGMVTQFIIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ ++ S+ T+PIG F L F L +S
Sbjct: 130 FMFLSTMFFLATDGHLKMLQLVLFSFKTLPIGSGSLNAVDFRELALWLGIMFKTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + +L G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALLVGLLICWYILAGLYSHYELYWLQG 248
>gi|157961201|ref|YP_001501235.1| flagellar biosynthesis protein FliR [Shewanella pealeana ATCC
700345]
gi|157846201|gb|ABV86700.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC
700345]
Length = 266
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 90/238 (37%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + R+ S M++ + P +VRL ++ + + P L ++ F A
Sbjct: 12 IAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVTVTAAVAPVLPAMPNIDLFSLSAA 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ +G G + TG +I L + + S + +
Sbjct: 72 FVT--AQQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVVGNFF 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + +D H + ++ S+ +IP+ + + F + F L +S
Sbjct: 130 LLLTTMIFLAVDGHLLLIKMVIASFESIPVSMQGLSLASYRLFTEFVGYMFGAALTMSLS 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ I P + G L L++ I+ F +
Sbjct: 190 AIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVAGLFILWLTLSPIMSHFDEVWRET 247
>gi|159184373|ref|NP_353608.2| flagellar biosynthesis protein FliR [Agrobacterium tumefaciens str.
C58]
gi|159139686|gb|AAK86393.2| flagellar biosynthetic protein FLIR [Agrobacterium tumefaciens str.
C58]
Length = 240
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 94/236 (39%), Positives = 147/236 (62%), Gaps = 1/236 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNRAYYSK 71
FL +CR+G+C M +PG S S I Q+R+ +A S+ LLP LWDTI + ++
Sbjct: 2 FLAICRIGACFMTMPGFSSSRISPQIRMLLCVAVSMALLPVLWDTIYPKVSGASQGAVVG 61
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L+ E+ +G ++GL+ R YTLG QFTG++I +IGL+ + + E + + I
Sbjct: 62 LIFSEVLIGAMYGLIARFYTLGFQFTGALIGASIGLSAPGGADPIEDVQENQIANFITFG 121
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
GLL L+++DFHH V ALV SY P+G ++ + + + L+ +F IMLRL+SPF+
Sbjct: 122 GLLVLFMMDFHHIVLKALVDSYSATPVGALISGQKMLITLTDTLRASFSIMLRLASPFVI 181
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ ++FN+++GL+NKL PQIP++FISTP+++ G L LS+ ++ QF F F
Sbjct: 182 YGLMFNVAVGLINKLAPQIPVFFISTPFVLAGGLFMLYLSVAALIRQFVDGFGPVF 237
>gi|318605251|emb|CBY26749.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 260
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + F + R+ + I P LS I +V++ A+ + ++ P L + +
Sbjct: 10 SVWVSQYFWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSLP---PVNIPLV 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 67 SSGALWVAGQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ +L D H + L S+ T+PI E GN F + FM L L
Sbjct: 127 RLLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSWIFMNGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F
Sbjct: 187 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 FF 248
>gi|316932837|ref|YP_004107819.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris
DX-1]
gi|315600551|gb|ADU43086.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris
DX-1]
Length = 268
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 123/237 (51%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L+ R+G+ +ML+P L S IP +++L A+ ++++LP + +
Sbjct: 23 ALAATFMLVFARIGAMVMLMPALGESNIPTRIKLSIALLLTMIMLPLHRSAYQID-MSSL 81
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ +G V G RV LQ G+VI+ +GL +++ + + +
Sbjct: 82 TPLLVLMVQEIAIGIVLGATARVTLSALQVAGAVIAQQLGLGFVSAVDPTQGQQGVLVGN 141
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++G+ L+ D HH V AL SY G+ LN G++ + F + L+L+
Sbjct: 142 FLTLLGVTMLFATDMHHLVIQALSDSYKVFAPGELLNTGDVAALATQAFAAAFKLGLQLA 201
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+PFL F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + + ++ F F
Sbjct: 202 APFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIVIGFIVLAVVLTTMMGAFLGYF 258
>gi|163801857|ref|ZP_02195754.1| flagellar biosynthesis protein R [Vibrio sp. AND4]
gi|159174365|gb|EDP59169.1| flagellar biosynthesis protein R [Vibrio sp. AND4]
Length = 260
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 92/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ ++RL +A + + P + ++
Sbjct: 11 WIANYFWPYTRISAMLMVMTVTGARFVSPRIRLYLGLAITFAVAPAIPAVPQDIELLSFR 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ + L L
Sbjct: 71 GF-MTIAEQIIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQSTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ T+PIG F L F L +S
Sbjct: 130 FMFLVTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNALDFRELAGWLGIMFKTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G LF + + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFTFALIIGLLFCWYILAGLYSHYELFWNVG 248
>gi|238025695|ref|YP_002909926.1| flagellar biosynthetic protein FliR [Burkholderia glumae BGR1]
gi|237874889|gb|ACR27222.1| Flagellar biosynthetic protein FliR [Burkholderia glumae BGR1]
Length = 259
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 106/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ + + P + + +P++V++ + +I + P L F
Sbjct: 11 VWLTAFLWPFVRILALVAAAPLIGNAAVPVRVKIGLSALTAIAVAPALGPLPQATVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + + +G G ++++ ++ G I +GL T +
Sbjct: 71 GIWILV--NQFLIGVSMGFVMQIVFAVVEAAGDYIGLQMGLGFATFFDPHAGT-TPMMGR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ +LA D H Q+ ALV+S+ ++PI +L + + F + L L+
Sbjct: 128 ILNAFAMLAFVAFDGHLQLIAALVESFASVPISADLLHPAGWQTLAGAGINVFAMGLLLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI I+ I P L+ +G L + L + ++ FS F G
Sbjct: 188 LPVVAALLIANLALGILNRAAPQIGIFQIGFPVLMLVGLLLVQLMVPNMMPFFSRLFDNG 247
Query: 247 F 247
+
Sbjct: 248 Y 248
>gi|323703183|ref|ZP_08114836.1| flagellar biosynthetic protein FliR [Desulfotomaculum nigrificans
DSM 574]
gi|323531842|gb|EGB21728.1| flagellar biosynthetic protein FliR [Desulfotomaculum nigrificans
DSM 574]
Length = 255
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 104/239 (43%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + FL+ R+ S P ++ IP V+ + +I++ P + +
Sbjct: 5 TLITTFFLVFMRMVSFTFACPLYAIPGIPPLVKAGLSFILAILITPMVKP-VSADLPGGL 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +V E+ +G V GL+ ++ G ++ IG + + M T ++
Sbjct: 64 WGFGLVVFSEVGVGLVLGLVCTFVFNVIRMAGQLLDFQIGFAMASVMDPLSGSVNTLVSR 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + L+ +D HH + AL KSY +P+ G + + + TF + +++
Sbjct: 124 FLYFLTLVLFLNVDGHHVLIRALAKSYELVPLNAAGINGEVTLLIIRIFADTFALAVQIC 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+P + ++ ++++GL+ K PQ+ I+ + P I +G L + + + F F
Sbjct: 184 APVVAVLVITDLAMGLVGKTAPQMNIFQLGFPLKIAVGVASLAILLPALTSVFKILFDT 242
>gi|299069239|emb|CBJ40499.1| Hrp conserved hrct protein, Type III secretion system inner
membrane protein [Ralstonia solanacearum CMR15]
Length = 282
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 79/227 (34%), Gaps = 4/227 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ + +LP + + R A +I++ + L ++ L E
Sbjct: 30 VRIMTLFSILPATNDQMLTGVARNGVVYALAILVA--AGQPVGLAAHLSAGQLFMLTCKE 87
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+FLG G + G++I G N TP+ + + + +
Sbjct: 88 IFLGACLGFAASTVFWVAETAGTIIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + +S+ P+G L N + + + F ++L++P + +
Sbjct: 148 YAAGGMLFLLGVVFESFTWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTVL 207
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ + IGLL + ++ + P + L + + + Q
Sbjct: 208 LIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVMALVSALSTQVKG 254
>gi|23016624|ref|ZP_00056378.1| COG1684: Flagellar biosynthesis pathway, component FliR
[Magnetospirillum magnetotacticum MS-1]
Length = 254
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 118/247 (47%), Gaps = 1/247 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+T ++ + FL+ R+G+ +ML PGL S + ++RL A+A + V++P +
Sbjct: 2 LTDLLQLDIFRFFLVFTRIGAALMLFPGLGGSLVSTRIRLLLALAVAFVIMPVVAPVFPA 61
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ V E +G G ++ L GS+I GL S
Sbjct: 62 -VPKSVGGMLLSVFGEAVVGAYIGTVVMFIMSTLNMAGSMIGYQTGLTNAFSFDPISQQQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
L + IGL+A++ D HH +F A +SY P GQ L FG+ + ++ TF
Sbjct: 121 SQLLTGFLSNIGLVAVFATDLHHLMFQAAYESYALFPPGQPLQFGDYAETLGHLATDTFK 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ + ++P + F +VF +GLL++LVPQ+ ++F++ P + +G ++I +++ F
Sbjct: 181 VGTQFAAPLVVFGLVFYTGLGLLSRLVPQLQVFFVAMPVQVMVGMWLFMVTIPLVISLFL 240
Query: 241 HSFLYGF 247
F G
Sbjct: 241 RFFESGL 247
>gi|222053618|ref|YP_002535980.1| flagellar biosynthetic protein FliR [Geobacter sp. FRC-32]
gi|221562907|gb|ACM18879.1| flagellar biosynthetic protein FliR [Geobacter sp. FRC-32]
Length = 260
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 110/235 (46%), Gaps = 1/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
L+V R+ +P +PM++++ M+ +++L P + + +
Sbjct: 12 FTLFSLVVGRMAGLFSAIPLFGGKSVPMRIKMAVIMSMALLLFPIIKMQVP-PLPGDSIS 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
LV+ E +G G++ + ++ G ++ +G+++ + ++
Sbjct: 71 IGLLVIRETLIGLTLGIISQAIFAAVEMCGQIVGMQMGISIAALFDPNTQSNVPTMSLFQ 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
GI+ +L + HH A+V+SY IP+G G + F+ + F++ ++L++P
Sbjct: 131 GILAMLLFVALGVHHIFIRAIVESYQVIPVGAWHMSGELMQFFITSIGAVFILGVKLAAP 190
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + ++++G++ + PQ+ I+ +S P IG+G L L LS+ + +SF
Sbjct: 191 VMVALLATSVALGIMARAFPQMNIFMVSMPLNIGIGFLALGLSLLAFLRTLQNSF 245
>gi|22126371|ref|NP_669794.1| flagellar biosynthesis protein FliR [Yersinia pestis KIM 10]
gi|45441392|ref|NP_992931.1| flagellar biosynthesis protein FliR [Yersinia pestis biovar
Microtus str. 91001]
gi|108812466|ref|YP_648233.1| flagellar biosynthesis protein FliR [Yersinia pestis Nepal516]
gi|149366234|ref|ZP_01888269.1| flagellar biosynthetic protein FliR [Yersinia pestis CA88-4125]
gi|162100178|ref|YP_651106.2| flagellar biosynthesis protein FliR [Yersinia pestis Antiqua]
gi|165926001|ref|ZP_02221833.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938779|ref|ZP_02227334.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010957|ref|ZP_02231855.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166210878|ref|ZP_02236913.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401187|ref|ZP_02306690.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167420441|ref|ZP_02312194.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425768|ref|ZP_02317521.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467508|ref|ZP_02332212.1| flagellar biosynthesis protein FliR [Yersinia pestis FV-1]
gi|218928939|ref|YP_002346814.1| flagellar biosynthesis protein FliR [Yersinia pestis CO92]
gi|229896263|ref|ZP_04511433.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides A]
gi|229897200|ref|ZP_04512356.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897927|ref|ZP_04513078.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902842|ref|ZP_04517959.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516]
gi|270486629|ref|ZP_06203703.1| flagellar biosynthetic protein FliR [Yersinia pestis KIM D27]
gi|294504014|ref|YP_003568076.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
gi|21959356|gb|AAM86045.1|AE013852_7 flagellar biosynthesis protein [Yersinia pestis KIM 10]
gi|45436252|gb|AAS61808.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Microtus str. 91001]
gi|108776114|gb|ABG18633.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516]
gi|115347550|emb|CAL20459.1| flagellar biosynthetic protein FliR [Yersinia pestis CO92]
gi|149292647|gb|EDM42721.1| flagellar biosynthetic protein FliR [Yersinia pestis CA88-4125]
gi|165913393|gb|EDR32015.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922205|gb|EDR39382.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990301|gb|EDR42602.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166208058|gb|EDR52538.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166962136|gb|EDR58157.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049576|gb|EDR60984.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055167|gb|EDR64964.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229680289|gb|EEO76388.1| flagellar biosynthetic protein FliR [Yersinia pestis Nepal516]
gi|229688968|gb|EEO81033.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693537|gb|EEO83586.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701186|gb|EEO89215.1| flagellar biosynthetic protein FliR [Yersinia pestis Pestoides A]
gi|262361800|gb|ACY58521.1| flagellar biosynthesis protein [Yersinia pestis D106004]
gi|262366064|gb|ACY62621.1| flagellar biosynthesis protein [Yersinia pestis D182038]
gi|270335133|gb|EFA45910.1| flagellar biosynthetic protein FliR [Yersinia pestis KIM D27]
gi|294354473|gb|ADE64814.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
gi|320015444|gb|ADV99015.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 260
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + F + RV + I P LS I +V++ + + ++ P L + +
Sbjct: 10 SVWVSQYFWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSLP---PVNIPLF 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + + ++ +G G+ ++ ++ +G VI +GL+ T S L+
Sbjct: 67 SSAALWVAIQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLS 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ I+ L D H + L S+ T+PI GN F + FM L L
Sbjct: 127 RLLNILVTLLFLSFDGHLWLISLLADSFHTLPIQFAPLNGNGFLTLAQSGSMIFMNGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F
Sbjct: 187 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFSE 246
Query: 246 GF 247
F
Sbjct: 247 FF 248
>gi|332981451|ref|YP_004462892.1| flagellar biosynthetic protein FliR [Mahella australiensis 50-1
BON]
gi|332699129|gb|AEE96070.1| flagellar biosynthetic protein FliR [Mahella australiensis 50-1
BON]
Length = 259
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 106/240 (44%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ +L P +P +++ + ++VLL + + N
Sbjct: 9 YIPTFLLVFMRMTGLFVLSPVFGRRNVPAYLKIGMSFMMAMVLLNTIPLQ-SIDIVNNIW 67
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y ++ E+ +G G + + + G ++ IG + + + +A + +L
Sbjct: 68 LYVWILFKEMLIGLAMGYITTLAFSAILIAGQIMDFQIGFGMVNAFDPVNEVAVPIVGNL 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I ++ LL + ++ HH + L SY +PIG +I + + TF+ ++L+
Sbjct: 128 INMMALLLFFGMNGHHVLISLLFDSYTVLPIGDFSIKPDILWYILEIFVQTFVWAIKLAI 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ + +G+L++ +PQ+ ++ + P + +G + L L + + + F F
Sbjct: 188 PLMAVLLLTEVMLGVLSRALPQMNVFVMGMPIRLMIGLIMLLLVLPVYINLMEPLFADMF 247
>gi|330828811|ref|YP_004391763.1| flagellar biosynthetic protein fliR [Aeromonas veronii B565]
gi|328803947|gb|AEB49146.1| Flagellar biosynthetic protein fliR [Aeromonas veronii B565]
Length = 265
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 95/239 (39%), Gaps = 2/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S+ + RV S +M++ P +VR+ A+A + ++ P L ++ F
Sbjct: 10 EWLSSILWPLARVSSLLMVMAVFGSRLAPARVRMGLALAITFLIAPLLPKMPPIELFSAG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +L +G GL+ + G VI+ L T + + + +
Sbjct: 70 SFLVL--GQQLLIGIALGLMTQFLMESFVMAGQVIAMQTSLGFATLVDPMNGQSAPVVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + ++ S+ T+P+ + + + L + L +S
Sbjct: 128 FYLMLATLVFLALDGHLVMLRLVILSFETLPVSEHGLSVSSMKTLSAFLGVMYQAALVMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ ++ N + G++ + PQ+ I+ I + G L L L+I + F +
Sbjct: 188 LSAIVALLLINFAFGVMTRAAPQLNIFSIGFAVSMMSGLLILWLTIGGFLGHFDIMWER 246
>gi|226944500|ref|YP_002799573.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
gi|226719427|gb|ACO78598.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
Length = 264
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 2/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +++ F CR+ + ++ P S +P +V++ A+ S++L P L ++ F
Sbjct: 10 QQWLLAFFWPFCRITAFLLATPLFGHSGVPARVKIALAVLLSVLLGPNLPPLPEVALFSW 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + ++ +G G+++RV Q G +I +GL T L+
Sbjct: 70 PG--LGITVEQMLIGLAIGMVMRVTFAAAQTAGDIIGLQMGLGFATFFSPDTGTNSMVLS 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ I LL D H L ++ ++PIG + + T F+ L L
Sbjct: 128 RLLYTIALLLFLAFDGHLLELELLAGTFASLPIGLPRLDPSAWEMLARYGGTLFVSGLLL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ N+++G+LN+ PQ+ ++ + P + LG L L + + +
Sbjct: 188 ALPLVASLLIVNLAMGILNRSAPQLTVFSVGFPLSLSLGLLLLTVLMGNLGGFIQGLLRA 247
Query: 246 GF 247
G
Sbjct: 248 GL 249
>gi|121592128|gb|ABD36818.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens]
Length = 261
Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 106/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S L + RV S +M++P + +P +VRL FA+A ++V+ P L +
Sbjct: 13 STWVASFMLPLFRVASMLMVMPVFGTTLVPRRVRLYFALAITVVITPNLPPMPAVSPLDL 72
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ ++ +G V G ++++ G +++ +G+ + + ++ ++ +
Sbjct: 73 SG--LLLIGEQILVGAVLGFSLQLFFQAFAVAGQIVAIQMGMGFASMVDPANGVSVAVIG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H VF L +S+ T+P+G L + L L L
Sbjct: 131 QFFTMLVTLLFLSMNGHLVVFEVLTESFTTLPVGGGLMTAQYWE-LAGKLGWVLGAALLL 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + +V NI+ G++ + PQ+ I+ I P + LG + + + I+ Q+
Sbjct: 190 VLPAVTALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGLFIVWVGLADILNQYQPLASE 249
Query: 246 GF 247
Sbjct: 250 AL 251
>gi|149191145|ref|ZP_01869403.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1]
gi|148834983|gb|EDL51962.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1]
Length = 259
Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 3/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L+ R+ ++ P + IP++V+L FA FS++L P + + F
Sbjct: 10 QWLGILWWPFVRLTGLFLIAPFFGDNAIPVRVKLLFAFIFSLLLAPLVHEVPPFNPFSID 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L +L G + G + ++ G IS +GL + ++ ++ +
Sbjct: 70 TLLFSL--YQLIFGFLVGFAVMIFFTIFSIAGQAISMQMGLAMAVMNDPANGISIAIIGR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ I +L +D H V +S+ P+ F +I + M+ F L ++
Sbjct: 128 IMFITSMLLFLSLDAHLVVLLVFKESFTYWPLDSTFPFSSI-DYVLKMVSWMFATGLLVA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ NI+ GL+NK P + ++ + P + LG L S+ I + L
Sbjct: 187 VPAIVVMLLSNITFGLMNKAAPSLNVFALGFPMTMLLGLFALMASLTGIGDHYFDLVLE 245
>gi|90406807|ref|ZP_01214999.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
gi|90312044|gb|EAS40137.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
Length = 264
Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 98/240 (40%), Gaps = 1/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + CR+ + +M++ + P+++RL +A+A +I +LP L + +
Sbjct: 10 ELLATYLWSFCRIAAMLMVMVAVGSRTTPVRIRLFYALAITIAVLPVL-PIVQTNIELFS 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +++ +L +G G + G +I+ L + + + +
Sbjct: 69 LGSAFIILQQLLIGIAIGTISVFVVQTFVVAGQIIAMQTSLGFASMADPMNGQSSPVVGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L + +D H + +++S+ T+P+ + F L S
Sbjct: 129 FYVLLVTLLFFGVDGHLLMIEFIIRSFDTLPVSMHGLLATDYKKLAGWFSVMFSAALAFS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ K PQ+ I+ + + G L +++ + F + +L G
Sbjct: 189 LASMVAMLLVNLSFGIMTKAAPQLNIFSLGFSISMVFGLFVLWVTLVNVPAHFENQWLRG 248
>gi|213580028|ref|ZP_03361854.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 253
Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 1 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 57
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 58 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 117
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 118 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 177
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 178 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 237
>gi|322421719|ref|YP_004200942.1| flagellar biosynthetic protein FliR [Geobacter sp. M18]
gi|320128106|gb|ADW15666.1| flagellar biosynthetic protein FliR [Geobacter sp. M18]
Length = 261
Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 102/235 (43%), Gaps = 1/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ L++ RV M +P +P +V+ A ++++ P + + +
Sbjct: 13 LIPFALVLARVAGLFMAIPMFGARLVPNRVKAVLIFALALLIFPIIRLH-AIPAADDSLS 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
LV+ E +G G + + ++F G ++ T +G+++ + +
Sbjct: 72 LMLLVLRESLIGLTLGAISQFVFAAVEFCGQLVGTQMGISIAAQFDPTTQNNVPTMAIFQ 131
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
G + L + HH +V+SY IP+G G + + F+I ++L++P
Sbjct: 132 GALATLIFLSLGVHHFFIRGIVESYQLIPLGAWHTSGGLLKFLIEASTGIFVIGIKLAAP 191
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ ++ +G++ + P + ++ +S P IG+G L L +S+ + + SF
Sbjct: 192 VSVALLATSVVLGIVARSFPAMNVFMVSMPLNIGIGFLILGISLPVFLRVLQGSF 246
>gi|167464150|ref|ZP_02329239.1| flagellar biosynthesis protein FliR [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 259
Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 103/245 (42%), Gaps = 7/245 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + L+ CR+ + +++P S +P Q ++ ++ ++++ L +
Sbjct: 5 QLLPNAMLVFCRITAFFVVVPTFSSRNVPSQFKIGLSLVITLIVFTALGMNNPV---TMD 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y + E+ +G G + ++ +Q GS I +G + + + L +
Sbjct: 62 GTYLLAIFREILVGITLGFVAYLFFTAVQIAGSFIDIQMGFGIANVIDPMTGASAPILGN 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPI----GQELNFGNIFSSFVNMLQTTFMIM 182
+I L + HH + A++ SY +P+ + G + V T F +
Sbjct: 122 FKYMIATLLFLSFNGHHLLLQAIMNSYDWVPMTNEVFARVFEGQVSEWIVRSFTTMFGLA 181
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+L++P + ++ +GLL ++ PQ I+ + P+ + LG + L + + + F
Sbjct: 182 FQLAAPIAAALFLTDLGLGLLTRVAPQFNIFVVGAPFKMLLGFVLLLMLLPELGSMFEKV 241
Query: 243 FLYGF 247
F F
Sbjct: 242 FTTMF 246
>gi|51596027|ref|YP_070218.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis IP
32953]
gi|153948291|ref|YP_001401273.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis IP
31758]
gi|170024629|ref|YP_001721134.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis
YPIII]
gi|186895132|ref|YP_001872244.1| flagellar biosynthesis protein FliR [Yersinia pseudotuberculosis
PB1/+]
gi|51589309|emb|CAH20930.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP
32953]
gi|152959786|gb|ABS47247.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP
31758]
gi|169751163|gb|ACA68681.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis
YPIII]
gi|186698158|gb|ACC88787.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis
PB1/+]
Length = 260
Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + F + RV + I P LS I +V++ + + ++ P L + +
Sbjct: 10 SVWVSQYFWPLVRVLALIGTAPLLSEKQINKKVKIGLGVLITFLIAPSLP---PVNIPLF 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + + ++ +G G+ ++ ++ +G VI +GL+ T S L+
Sbjct: 67 SSAALWVAIQQILIGVALGVTMQFAFAAVRLSGEVIGLQMGLSFATFFDPSGGPNMPVLS 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ I+ L D H + L S+ T+PI GN F + FM L L
Sbjct: 127 RLLNILVTLLFLSFDGHLWLISLLADSFHTLPIQFAPLNGNGFLTLAQSGSMIFMNGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F
Sbjct: 187 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 FF 248
>gi|294140215|ref|YP_003556193.1| flagellar biosynthetic protein FliR [Shewanella violacea DSS12]
gi|293326684|dbj|BAJ01415.1| flagellar biosynthetic protein FliR [Shewanella violacea DSS12]
Length = 265
Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ S + RV S M++ + P++VR +MA + ++P L +++ F A
Sbjct: 11 TIASYMWPLFRVSSMFMVMAVFGANTTPVRVRALLSMAITFAIVPVLPPVENVELFAASA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L +L +G G + + TG +I L + + S + +L
Sbjct: 71 MFITL--QQLLIGIAMGFVTLLVMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ + +D H + LV S+ TIPI + + + F L +S
Sbjct: 129 FLLLTTMIFLAVDGHLVMIRMLVMSFETIPISDQGLSITSYRMLADWGGYMFGAALTMSI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F+ +
Sbjct: 189 TPIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLVILWLTLTPIMEHFNEVWTSA 247
>gi|311030113|ref|ZP_07708203.1| flagellar biosynthesis protein FliR [Bacillus sp. m3-13]
Length = 258
Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 7/244 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L++ RV + + LP S +P ++ F++V+ L DL
Sbjct: 7 YFPAFLLVLTRVTAFFVTLPLFSYRNVPSTFKVGLGFFFALVMSFSL----DLPIIGIDG 62
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y LV+ EL +G + GL+ + +Q G I +G + + + +
Sbjct: 63 TYILLVIKELMVGLLIGLVAYMVLSAIQIAGGFIDFQMGFAIANVIDPQTGIQSPIMGQF 122
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLR 184
LL L ++ HH + + SY I + Q +F + + T F+I L+
Sbjct: 123 FYTFALLLLLAVNGHHLMMDGIFYSYEMIAVTQAWIPLGEAQVFEFVLKTINTMFVIALQ 182
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L+ P + + ++++G++ + VPQ+ ++ + P IG+ + + S+ I+ F F
Sbjct: 183 LAIPIVGVLFLVDVALGIVARTVPQLNVFVVGLPLKIGVSFITIIFSLTILFTLFYKLFE 242
Query: 245 YGFF 248
+
Sbjct: 243 LMLY 246
>gi|319649549|ref|ZP_08003705.1| flagellar biosynthetic protein fliR [Bacillus sp. 2_A_57_CT2]
gi|317398711|gb|EFV79393.1| flagellar biosynthetic protein fliR [Bacillus sp. 2_A_57_CT2]
Length = 258
Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 102/242 (42%), Gaps = 7/242 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI RV S +++P S IP ++ + ++ + D+
Sbjct: 8 FPAFLLIFVRVTSFFLMMPLFSYRSIPAAHKIGLGFFLAWIMFLGM----DVPMLEIDGT 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
YS L++ E +G + G + + +Q G I +G + + + +
Sbjct: 64 YSLLIIKEALVGLMVGFIAYLILSAIQIAGGFIDFQMGFAIANVIDPQTGAQSPLMGQYL 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRL 185
I L L ++ HH + + SY IP+ Q ++ + L T F+I ++
Sbjct: 124 YTIALFFLLTVNGHHLMLDGVFYSYDFIPLDQAWISFGDEDMAEYVIKALNTMFVIAFQM 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P + + ++++G++ + VPQ+ ++ + P IG+ + L + + +++Y S +F
Sbjct: 184 SIPVVGSLFLVDVALGIVARTVPQLNVFVVGLPLKIGVSFIVLIIVMSVLMYAVSLAFET 243
Query: 246 GF 247
Sbjct: 244 ML 245
>gi|127512309|ref|YP_001093506.1| flagellar biosynthesis protein FliR [Shewanella loihica PV-4]
gi|126637604|gb|ABO23247.1| flagellar biosynthetic protein FliR [Shewanella loihica PV-4]
Length = 265
Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 95/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV S +M++ + P +VRL ++A + + P L +++ F
Sbjct: 10 QTLSAYMWPLFRVSSMLMVMAVFGANTTPTRVRLLLSVAITFAIAPMLPVNTEVELFSLG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G G + + TG +I L + + + +
Sbjct: 70 AVFVTV--QQILIGVAMGFVTLLIMQTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ + +D H + LV S+ TIP+ + + F L +S
Sbjct: 128 FFLLLTTMIFLAVDGHLVMIRMLVASFDTIPVSMQGISIASYRRLAEWGAYMFGAALTMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F +
Sbjct: 188 ISAIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLIILWLTLTPIMAHFDEVWRSA 247
>gi|5921666|gb|AAD01928.2| FliR [Pseudomonas putida]
Length = 258
Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 109/241 (45%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + RV + +M++P L +P +VRL A+A ++V++P L + +
Sbjct: 11 TWVATFMLPLFRVVAMMMVMPILGTRMLPSRVRLYAAVAITVVIVPGLPPLPEFDPLSVQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G + GL +++ G +++ +G+ + + ++ + ++
Sbjct: 71 G--LLLCAEQIIVGTLFGLSLQLLFQVFVLAGQIVAIQMGMAFASMVDPANGVNVAVISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + +++ H +F L +S+ T+P+G L N F L F L L
Sbjct: 129 FMSMLVSVLFLLMNGHLVMFEVLTESFTTLPVGNALMI-NHFWEIAGRLSWVFGAGLLLI 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ G++ + PQ+ I+ I P + +G L + + I+ +
Sbjct: 188 LPAIAALLVVNVAFGVMTRAAPQLNIFSIGFPLTLVMGMLIFWIGLADILSHYQALASEA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|300693819|ref|YP_003749792.1| hrp conserved hrct protein, type III secretion system inner
membrane protein [Ralstonia solanacearum PSI07]
gi|299075856|emb|CBJ35165.1| Hrp conserved hrct protein, Type III secretion system inner
membrane protein [Ralstonia solanacearum PSI07]
Length = 282
Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 35/227 (15%), Positives = 81/227 (35%), Gaps = 4/227 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ + +LP + + R A +I++ + L + A L E
Sbjct: 30 VRIMTLFAILPATNDQMLTGVARNGVVYALAILVA--AGQPVGLAAHLGAAQLFMLTCKE 87
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+FLG G + G++I G N TP+ + + + +
Sbjct: 88 IFLGACLGFAASTVFWVAETAGTIIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLAVTLF 147
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + +S+ P+G L N+ + + + F + ++L++P + +
Sbjct: 148 YAAGGMLFLLGVVFESFQWWPLGAALPDMNVVAQSFLLQQTDSIFSMAVKLAAPVMMTVL 207
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ + IGLL + ++ + P + L + + + Q
Sbjct: 208 LIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVKG 254
>gi|313200555|ref|YP_004039213.1| flagellar biosynthetic protein flir [Methylovorus sp. MP688]
gi|312439871|gb|ADQ83977.1| flagellar biosynthetic protein FliR [Methylovorus sp. MP688]
Length = 256
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/245 (19%), Positives = 101/245 (41%), Gaps = 2/245 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
T + ++ L + R+ + I + P LS I +V++ A+ ++ LLP L L
Sbjct: 6 TDILQSWIVLLLWPMTRILAMIAVAPVLSHRSISARVKISMALMMTLALLPSLPQPPLLD 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
F ++ ++ +G G +R+ ++ G +I +GL
Sbjct: 66 IFS--WKGILVLAQQMVIGFAIGFSMRIVFAAVEMAGQMIGMTMGLGFAMFYDPQTQGQS 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
++ + ++ L +D H + A+++S+ P+ E G F N F
Sbjct: 124 NAISQFMVLLTTLIFLSLDGHLLMISAVMESFANFPLSAEWQGGLDFMKMANWGGKIFSA 183
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L +S P + ++ N+++G+L + PQ+ ++ I P I +G + + L + I+
Sbjct: 184 GLLISLPAIAALLITNMALGILTRTAPQLNLFGIGFPVTIAIGYVVVALVLPGILQPILQ 243
Query: 242 SFLYG 246
Sbjct: 244 LIQES 248
>gi|331006681|ref|ZP_08329959.1| Flagellar biosynthesis protein FliR [gamma proteobacterium
IMCC1989]
gi|330419513|gb|EGG93901.1| Flagellar biosynthesis protein FliR [gamma proteobacterium
IMCC1989]
Length = 258
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 95/239 (39%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ FL + R+ S M P S + ++RL ++ +I+++P L +
Sbjct: 12 WVSQYFLPLVRLASFFMAAPIFSTRIVSTRIRLILTLSITILIVPILPPAPLVSGIDVSM 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+V ++ +G G +V G I+ +GL + S+ ++ T ++
Sbjct: 72 --FIIVAQQILIGVALGFTFQVVFQLFVLAGQYIAMKLGLGFASMNDPSNGVSVTIVSQF 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ L + H + LV S+ IPIG + V + F L +S
Sbjct: 130 YLLTTTLLFLSFNGHLILIQILVDSFTAIPIGTVGISTSNIYRIVELGGWMFGSALVISM 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L +V N++ G++++ PQ+ I+ + P + G + + + + F G
Sbjct: 190 PVLTALLVVNVAFGVMSRSAPQMNIFAVGFPITLIFGLMIMWVGFSAFLSSFELFIDEG 248
>gi|292493585|ref|YP_003529024.1| flagellar biosynthetic protein FliR [Nitrosococcus halophilus Nc4]
gi|291582180|gb|ADE16637.1| flagellar biosynthetic protein FliR [Nitrosococcus halophilus Nc4]
Length = 258
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/246 (17%), Positives = 102/246 (41%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ ++ + CR+G+ +M +P + +P++VRL A+A ++V+ P + T
Sbjct: 5 SDEISALIGAYLWPFCRIGALLMAVPLFGSAVVPVRVRLVLALALTVVIAPVIPTTPVSP 64
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+ L++ + +G ++++ G ++ +GL + + ++
Sbjct: 65 LSLQGG---LLIIQQFLIGIAMAFVLQMVFQAFVIGGQTVAMQMGLGFASMIDPQHGVSV 121
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ ++ L I+ L +D H V L +S+ +P+G + F V F
Sbjct: 122 SMISQLYQILITLVFLALDGHLVVIQVLAESFYRLPLGMSGLNSDNFWQLVGGGSWMFAG 181
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ ++ P + ++ N++ G++ + PQ+ + I P + LG L ++ +
Sbjct: 182 SMLIALPAIGALLLVNLTFGVMTRAAPQLNPFSIGFPLTLILGFGILLFTLPSTSSHLVN 241
Query: 242 SFLYGF 247
Sbjct: 242 LVDTAL 247
>gi|251789176|ref|YP_003003897.1| flagellar biosynthetic protein FliR [Dickeya zeae Ech1591]
gi|247537797|gb|ACT06418.1| flagellar biosynthetic protein FliR [Dickeya zeae Ech1591]
Length = 260
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+I F + R+ + I P S I +V+L + +I ++P + T
Sbjct: 6 SIDMIGWFNQFFWPLVRILALISTAPIFSERAITRRVKLGLGVLITIAIMPAIPHT---S 62
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+ A ++ ++ +G + G +++ ++ G +I +GL+ T S
Sbjct: 63 IPIFSAAGIWMLFQQVVIGVMLGFTMQLAFTAIRLAGEIIGLQMGLSFATFFDPSGGPNM 122
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ + ++ LL ++ H + L S+ TIPIG GN+F S F
Sbjct: 123 PVIARFMNLLALLLFLTMNGHLWLISLLADSFHTIPIGAGPVSGNVFMSLAEAGGRIFSN 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L L+ P + + N+++GLL++L PQ+ I+ I P + G + + I +I
Sbjct: 183 GLMLALPLITLLLTINMALGLLSRLAPQLTIFAIGFPITLFTGIITVGFLIFLISPYAEK 242
Query: 242 SFLYGF 247
F +
Sbjct: 243 LFGETY 248
>gi|307824491|ref|ZP_07654716.1| flagellar biosynthetic protein FliR [Methylobacter tundripaludum
SV96]
gi|307734475|gb|EFO05327.1| flagellar biosynthetic protein FliR [Methylobacter tundripaludum
SV96]
Length = 238
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 2/231 (0%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ + + +P S+ +P +VRL ++ ++V++P L ++ F + + + +
Sbjct: 1 MRISAMFVAVPLFSIKAVPARVRLILSVVITLVVMPLLPPLPSVEMFSYAGFMTAIA--Q 58
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ +G G ++++ F G ++ ++GL + + L + L
Sbjct: 59 VMIGLTTGFILQLVFAAAVFAGQSVALSMGLGFSMMVDPQSGQQVPVIAQLYTVTTTLIF 118
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
+D H + L+ S+ T+PIG + S + F L L+ P + ++
Sbjct: 119 ISLDGHLLLIQMLLDSFKTLPIGIDGIDKAGIWSIIAWSSRMFAGGLLLTMPIIASLLLV 178
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
NI G+ + PQ+ I+ + P + LG L + ++ ++ QFS +
Sbjct: 179 NIIFGVAARAAPQLQIFSVGIPVTLMLGLLLIWKTLPDVLDQFSGMLTDAY 229
>gi|253998480|ref|YP_003050543.1| flagellar biosynthetic protein FliR [Methylovorus sp. SIP3-4]
gi|253985159|gb|ACT50016.1| flagellar biosynthetic protein FliR [Methylovorus sp. SIP3-4]
Length = 256
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 100/245 (40%), Gaps = 2/245 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
T + ++ L + R+ + I + P LS I +V++ A+ ++ LLP L L
Sbjct: 6 TDILQSWIVLLLWPMTRILAMIAVAPVLSHRSISARVKISMALMMTLALLPSLPQPPLLD 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
F R ++ +G G +R+ ++ G +I +GL
Sbjct: 66 IFSWRGMLVL--AQQMVIGFAIGFSMRIVFAAVEMAGQMIGMTMGLGFAMFYDPQTQGQS 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
++ + ++ L +D H + A+++S+ P+ E G F N F
Sbjct: 124 NAISQFMVLLTTLIFLSLDGHLLMISAVMESFANFPLSAEWQGGLDFMKMANWGGKIFSA 183
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L +S P + ++ N+++G+L + PQ+ ++ I P I +G + + L + I+
Sbjct: 184 GLLISLPAIAALLITNMALGILTRTAPQLNLFGIGFPVTIAIGYVVVALVLPGILQPILQ 243
Query: 242 SFLYG 246
Sbjct: 244 LIQES 248
>gi|149182521|ref|ZP_01860994.1| flagellar biosynthesis protein R [Bacillus sp. SG-1]
gi|148849781|gb|EDL63958.1| flagellar biosynthesis protein R [Bacillus sp. SG-1]
Length = 258
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 7/243 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ RV + + LP S IP Q R+ FA + ++ TID A
Sbjct: 8 LSIFLLVFMRVSAFFVTLPLFSYRSIPAQHRVGFAGVIAWIMY----YTIDASPMPIDAA 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y L+M E +G + G + +Q GS I +G + + + +
Sbjct: 64 YILLIMKEAMIGLLIGFTAYMIISAIQVAGSFIDFQMGFAIANVIDPQTGAQSPLVGQYL 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRL 185
LL L +D HH + + SY IP+ Q N+ V + F+I ++
Sbjct: 124 YTFALLLLLALDGHHLLLDGVFYSYQFIPVDQPWIPFGNENLVEYIVKTFNSVFIIAFQM 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P + + ++++G++ + VPQ+ ++ + P I + L L + + ++ F
Sbjct: 184 SIPVVATLFLVDVALGIVARTVPQLNVFVVGFPIKIAVSFLVLFIVLGAMMTVMQQMFEL 243
Query: 246 GFF 248
+
Sbjct: 244 MMY 246
>gi|89895722|ref|YP_519209.1| hypothetical protein DSY2976 [Desulfitobacterium hafniense Y51]
gi|219670146|ref|YP_002460581.1| flagellar biosynthetic protein FliR [Desulfitobacterium hafniense
DCB-2]
gi|89335170|dbj|BAE84765.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540406|gb|ACL22145.1| flagellar biosynthetic protein FliR [Desulfitobacterium hafniense
DCB-2]
Length = 260
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI+ R IML P +P V+L A++ SI+L P + Q
Sbjct: 11 LTLFLLILSRWAGMIMLAPVFGARGVPAMVKLGLAVSISIILYPLIMAAGP-QIPSETLP 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y+ L++ E+ +G V G +I T L+ G +I +G N+ ++ + + +
Sbjct: 70 YAALLIKEIVVGLVIGFVIYAITAVLEGAGQLIDMQMGFNMSGAIDPIFGVQSAMMGNFQ 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
I+ ++ L + HH + A+VKSY +PI + + ++ +++ F + ++L+ P
Sbjct: 130 MILAIMLLLATNSHHYLIAAMVKSYTYVPINPGALPQGL-NYYIFLIREIFTLSVQLALP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ +I +GLL + VPQ+ I+ + P I G L L I + F
Sbjct: 189 VIGALVLTDIGVGLLMRTVPQMNIFTVIFPVKIIFGFTILFLGIGFFGETVNMLFERA 246
>gi|254506950|ref|ZP_05119089.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus 16]
gi|219550235|gb|EED27221.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus 16]
Length = 260
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 95/239 (39%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++P +VRL +A + ++P + ++
Sbjct: 11 WLANYFWPYTRISAMLMVMSVTGARFVPTRVRLYLGLALTFAVMPVIPAVPKEIELLSFE 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G + + G ++ L + + ++ L L
Sbjct: 71 GFLTL-LEQIVIGVAMGTVTQFMIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ ++PIG F + L F + L +S
Sbjct: 130 FMFLATMFFLATDGHLKMIMLVVMSFQSLPIGAGSLTTVDFRELASWLGIMFKVSLSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + +L G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILGGLYSHYELFWLQG 248
>gi|258621116|ref|ZP_05716150.1| flagellar biosynthesis protein [Vibrio mimicus VM573]
gi|258626189|ref|ZP_05721037.1| flagellar biosynthesis protein [Vibrio mimicus VM603]
gi|261209857|ref|ZP_05924158.1| flagellar biosynthesis protein FliR [Vibrio sp. RC341]
gi|262166222|ref|ZP_06033959.1| flagellar biosynthesis protein FliR [Vibrio mimicus VM223]
gi|262170892|ref|ZP_06038570.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451]
gi|262404467|ref|ZP_06081022.1| flagellar biosynthesis protein FliR [Vibrio sp. RC586]
gi|258581544|gb|EEW06445.1| flagellar biosynthesis protein [Vibrio mimicus VM603]
gi|258586504|gb|EEW11219.1| flagellar biosynthesis protein [Vibrio mimicus VM573]
gi|260841043|gb|EEX67568.1| flagellar biosynthesis protein FliR [Vibrio sp. RC341]
gi|261891968|gb|EEY37954.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451]
gi|262025938|gb|EEY44606.1| flagellar biosynthesis protein FliR [Vibrio mimicus VM223]
gi|262349499|gb|EEY98637.1| flagellar biosynthesis protein FliR [Vibrio sp. RC586]
Length = 260
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/239 (14%), Positives = 92/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++P +VRL +A + ++P + ++
Sbjct: 11 FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L +
Sbjct: 71 GF-MITFEQIVIGMAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQM 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L D H ++ +V S+ ++PIG + L F L +S
Sbjct: 130 FMLLATLFFLSSDGHLKMIQLVVFSFKSLPIGSGSLTTVDYRELALWLGIMFKASLAVSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + +
Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYILSGLYTHYEIYWQET 248
>gi|152997435|ref|YP_001342270.1| flagellar biosynthetic protein FliR [Marinomonas sp. MWYL1]
gi|150838359|gb|ABR72335.1| flagellar biosynthetic protein FliR [Marinomonas sp. MWYL1]
Length = 260
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 4/237 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+S L R+G+ M LP + +VR+ F+ +I++ P + Y
Sbjct: 14 ISFLLPFFRIGAFFMALPLFGSRLVSPRVRIAFSFLVAIIITPVIDVPNYDPI---SPAY 70
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L+ +L +G V G ++ + G + + GL S ++ ++ L
Sbjct: 71 IVLIAEQLVIGFVLGFVVTILFQLFSLAGQLAAMKAGLGFAMSNDPANGISVATLGQYYL 130
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ LA + H + L +S+ PIG + + V + F L + P
Sbjct: 131 SMVALAFLGTNGHLVMIEYLAESFNYWPIGSGFDSQR-YWQLVLLGGWMFEKALLIVLPL 189
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+V N+S G++ K PQ+ ++ + P ++ F + ++ + + F
Sbjct: 190 AVAVLVINLSFGVVAKASPQLNVFALGFPIIMLFSLFFFWIMLDDFLNIYLLFFGEM 246
>gi|85711030|ref|ZP_01042090.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
gi|85694943|gb|EAQ32881.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
Length = 260
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 95/240 (39%), Gaps = 1/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV S +M + S + + ++++ ++A + + P L D
Sbjct: 10 EWLQQHLWPLTRVSSMLMSMALFSGTLVNSRIKVLLSLAITFAISPALPDVNPGVEIFTV 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ +G GLL ++ G +I+ IGL + + ++ +
Sbjct: 70 GGML-VTAQQIVIGVALGLLSLLFLQTFVLGGQIIAMQIGLGFASMVDPTNGQQVPVIAQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L +D H + +V S+ ++P+ + F + + F L
Sbjct: 129 FFLMLASLIFLALDGHLLMIQMVVASFDSVPVAMTGLNADAFRMIADWGSSMFSAALTAM 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G + L L++ ++ F + +
Sbjct: 189 LSGIIALLLINLSFGVMTRAAPQLNIFAIGFPITMVSGLIVLWLTLGGFIFHFENQWQEA 248
>gi|212634379|ref|YP_002310904.1| flagellar biosynthesis protein FliR [Shewanella piezotolerans WP3]
gi|212555863|gb|ACJ28317.1| Flagellar biosynthetic protein FliR [Shewanella piezotolerans WP3]
Length = 266
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/237 (17%), Positives = 91/237 (38%), Gaps = 2/237 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + R+ S M++ + P +VRL ++ + ++P L D++ F A
Sbjct: 12 IAGYMWPLTRISSMFMVMAVFGANTTPSRVRLLLSLTVTAAVVPVLPPMPDIELFSLSAV 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ +G G + TG +I L + + + +
Sbjct: 72 FVT--FQQIIIGVSMGFSTLLLMQTFVLTGQIIGMQTSLGFASMIDPGSGQQTPVVANFF 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + +D H + +V S+ +IP+ E + F + F L +S
Sbjct: 130 LLLTTMIFLAVDGHLILIKMVVASFDSIPVSMEGLSLASYRMFTEFVGYMFGAALTMSLS 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + N+S G++ + PQ+ I+ I P + G L L++ I+ F +
Sbjct: 190 AIVALLTINLSFGVMTRASPQLNIFAIGFPVTMVSGLFILWLTLTPIMAHFDEVWRE 246
>gi|311068159|ref|YP_003973082.1| flagellar biosynthesis protein FliR [Bacillus atrophaeus 1942]
gi|310868676|gb|ADP32151.1| flagellar biosynthesis protein FliR [Bacillus atrophaeus 1942]
Length = 259
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P +P R+ FA +++ L ++
Sbjct: 7 LFPAFLLVFIRISAFFVTIPLFGHRNVPAVHRIGFAFFLAVICFSTLDQAPSIEI---DE 63
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+Y L + E +G GL+ + +Q GS I +G + + +
Sbjct: 64 HYMLLAVKETVVGLSLGLIAFIMIAAVQIAGSFIDFQMGFAIANVIDPQTGAQSPLIGQF 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLR 184
I + LL + ++ HH + + S+ I I Q F+I +
Sbjct: 124 IYTMALLFMLSVNAHHLLLDGIYYSFQYISIDQAFPAFGNEEFAYFIAKSFNAMFIIAFQ 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+S+P + + ++++G++ + VPQ+ ++ + P I + + L + + +I + F
Sbjct: 184 MSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFGVIQNIF 242
>gi|302384125|ref|YP_003819948.1| flagellar biosynthetic protein FliR [Brevundimonas subvibrioides
ATCC 15264]
gi|302194753|gb|ADL02325.1| flagellar biosynthetic protein FliR [Brevundimonas subvibrioides
ATCC 15264]
Length = 257
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 116/235 (49%), Gaps = 1/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + LI R+G+ ++ LPG+ SY+P ++RL A+ S+ L P + ++
Sbjct: 10 VWAGGLIFARIGAILLSLPGIGESYVPPRIRLSLALVVSLALWPIVSPSLPA-LPETIGG 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ E+ G + G ++R +T L G ++S L+ + + +++ +
Sbjct: 69 MVGWIIREVVTGLMIGAILRAFTGALATAGEIVSLQTTLSFAQTANPLQAQPGATISAFL 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
I+G + ++ + HH LV SY I + L + + + +FM+ ++L++P
Sbjct: 129 MILGTVLVFATNTHHLFIAGLVGSYELIAPARPLIMADFTELAIRTIADSFMLGVQLAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ F ++FN++ GL+ +++PQ ++F + P + LG LS+ ++ F +
Sbjct: 189 VIVFALIFNLASGLVARVMPQFQVFFAAAPLSVILGLSIFALSLGVMGTVFIDRY 243
>gi|58582236|ref|YP_201252.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58426830|gb|AAW75867.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 263
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A ++VL P L + F +
Sbjct: 16 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQ 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G ++++ G ++S + GL+ + +
Sbjct: 76 A--VLSIARELAIGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG L F+ + L L
Sbjct: 134 WFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L+K P + + P + LG L F
Sbjct: 194 ALPMMVAMLAVNLAFGALSKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|238751769|ref|ZP_04613257.1| Flagellar biosynthetic protein fliR [Yersinia rohdei ATCC 43380]
gi|238710040|gb|EEQ02270.1| Flagellar biosynthetic protein fliR [Yersinia rohdei ATCC 43380]
Length = 260
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + R+ + I P LS I +V++ A+ + ++ P L + +
Sbjct: 12 WVSLYFWPLIRILALITTAPVLSEKQINRKVKVGLAVLITFLIAPSLP---PVNIPLFST 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 69 AGLWVAAQQILIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I+ +L D H + L S+ T+PI E GN F + F+ L L+
Sbjct: 129 LNILAMLLFLCFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++G+LN++ PQ+ ++ I P + +G + + L + ++ H F F
Sbjct: 189 PLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISIGLIMPLLAPFTEHLFGEFF 248
>gi|54307251|ref|YP_128271.1| flagellar biosynthetic protein FliR [Photobacterium profundum SS9]
gi|46911671|emb|CAG18469.1| Hypothetical flagellar biosynthetic protein FliR [Photobacterium
profundum SS9]
Length = 259
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ ++ R+G+ ++++P S IP QVR+ A S++ P + +
Sbjct: 11 AWLGQIWWPFFRLGAAMLMMPVFGGSTIPTQVRVGLAFCISLLAAPLMPPMPSVDPLSLD 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L + ++ +G + GL++ + G ++S +GL + S + ++ L
Sbjct: 71 A--LILGVQQMIIGGIMGLMLELLFGVFTTMGQILSMQMGLGMAMSNDPINGVSIPTLGK 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ LL +D H +V+S+ P+G+ + + S V L L+
Sbjct: 129 YYQLYILLLFLALDGHLVALDVVVQSFNVWPVGE-MPSQDALYSVVMRLGWLIAAAFLLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N + G++N+ PQ+ ++ + P + LG + L ++ I F+
Sbjct: 188 LPAVCAMLLVNGAFGMMNRAAPQLNVFALGFPMTMLLGLMCLLITTSSIPENFTRLCSET 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|323698076|ref|ZP_08109988.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. ND132]
gi|323458008|gb|EGB13873.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans
ND132]
Length = 262
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 96/235 (40%), Gaps = 2/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++S FL + R+ + LLP IP V+ + S+ L P L +
Sbjct: 11 LLSYFLTLFRISVVLFLLPFFGGQSIPKVVKAALVLVLSMALWPQL--SFPGSLMPTGWN 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + + EL LG + G+L+ +Q G +I +G + + + +
Sbjct: 69 IAIMFLGELVLGLILGMLVNFLFAAVQLGGQIIGFQMGFAMVNVVDPITGTSNAVSAHFL 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +L V++ H + A+ S+ IP G L + + + F + +++++P
Sbjct: 129 YMCTMLTFLVLNGHLYLLKAVGMSFQYIPPGTLLLQPELANDIFHFSNLMFTLAIKIAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + ++S+ L+++ PQ+ + + P I +G FL I+
Sbjct: 189 VMAALFLVDLSLALISRAAPQMHVLILGFPIKITVGFFFLGFIFSIMAQYVGDYL 243
>gi|134300233|ref|YP_001113729.1| flagellar biosynthesis protein FliR [Desulfotomaculum reducens
MI-1]
gi|134052933|gb|ABO50904.1| flagellar biosynthetic protein FliR [Desulfotomaculum reducens
MI-1]
Length = 255
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 101/239 (42%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + FL+ R+ S I P ++ IP V+ ++ + + P +
Sbjct: 5 VYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPA-AASFPGGL 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ +G GL+ ++ G ++ IG + M T ++
Sbjct: 64 WGLGLAVFSEVGVGLAIGLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSR 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + L+ +D HH + ALVKSY +P+ G + + + TF + +++
Sbjct: 124 FLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAMNGELTLLIIRIFTDTFALAVQIC 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+P + ++ ++++GL+ K PQ+ I+ + P I +G L + + + F + F
Sbjct: 184 APVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLFDT 242
>gi|332531135|ref|ZP_08407049.1| flagellar biosynthetic protein FliR [Hylemonella gracilis ATCC
19624]
gi|332039420|gb|EGI75832.1| flagellar biosynthetic protein FliR [Hylemonella gracilis ATCC
19624]
Length = 255
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 91/240 (37%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L RV + P S P++ R+ A+ ++ L +
Sbjct: 11 AWLTPLLWPFLRVLAVFTSAPIFSTRAFPVRARILLALLVAVCAQATLPPMPVISLNSPE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G G ++R+ + G VI +GL + + S +
Sbjct: 71 A--LGVTVQQVAIGLAIGFVVRLVFASFELAGEVIGFQMGLGFASFFDPALSGQSNAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G I L V++ H V A+ S+ P+ + + F L ++
Sbjct: 129 FFGYIAALLFVVLNGHLLVLMAVTHSFVAFPVSPDFLSNVRSMQIHLLGGELFASALWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+++++ PQ+ ++ I P I +G + L ++ ++ F
Sbjct: 189 LPMIGLMLFANLALGIISRVAPQMNVFAIGFPLTIFVGLIGLTATLPMLDGPFQSLLERM 248
>gi|74101642|gb|AAZ99732.1| FliRL [Aeromonas hydrophila]
Length = 260
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + ++P IP QVRL A S+++ P L + F
Sbjct: 14 AWLGQWWWPFIRIATAFWVMPVFGDGRIPPQVRLLLAFIVSLLIAPMLKKMPVVDPFSTG 73
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L + +L G + GL +++ + + G ++S +G + S+ ++
Sbjct: 74 A--LVLTVEQLLFGLLFGLCVQMLFMIMTMAGQILSMQMGPAMAVMNDPSNGDFAPIVSQ 131
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ I L ++ H LV+S + P G L+ + + + L L+
Sbjct: 132 LMLIFCSLLFLGLNGHLVTLDVLVQSLRSWPPGSSLDLLD-MKGIIGLFGWCIGAALILT 190
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ N++ G++N+ P + I+ + P + LG + + +SI + ++
Sbjct: 191 LPAVVAMLMVNLTFGVMNRTAPSLNIFSLGFPMTLLLGLVTMAISISGVPARYLDL 246
>gi|254462422|ref|ZP_05075838.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium
HTCC2083]
gi|206679011|gb|EDZ43498.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium
HTCC2083]
Length = 273
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/234 (18%), Positives = 100/234 (42%), Gaps = 2/234 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ FL R+ + + P + IP+QVR+ ++ S+ + + +
Sbjct: 27 LVFFLHTIRLSAFFLSAPFFGAASIPVQVRVMVSILISVSFFGKV--EVPDPQTLPFLLL 84
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+++MVE+ +G + GL++ V + G ++++ GL + + ++ L+
Sbjct: 85 VEVIMVEIAMGLLLGLILTVLFSSVALAGEKVASSAGLGFAAQVDPNLGGQTPVISQLLN 144
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ G++ +D H + SY +P+G+ NF + +S + F + LS P
Sbjct: 145 LFGIVLFLAMDGHLVCIALIKGSYDLMPLGRPFNFQALIASGLTSGGHMFSMASLLSFPI 204
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ ++ NI++G++ + PQ+ ++ P I L + + +
Sbjct: 205 VAILLLANITVGVITRSAPQLNLFSFGFPLTILACFFALYFATTPMAFATRDLL 258
>gi|332161330|ref|YP_004297907.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325665560|gb|ADZ42204.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861096|emb|CBX71363.1| flagellar biosynthetic protein fliR [Yersinia enterocolitica
W22703]
Length = 260
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + F + R+ + I P LS I +V++ A+ + ++ P L + +
Sbjct: 10 SVWVSQYFWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSLP---PVNIPLV 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 67 SSGALWVAGQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ +L D H + L S+ T+PI E GN F + FM L L
Sbjct: 127 RLLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTEAGSLIFMNGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F
Sbjct: 187 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 FF 248
>gi|126653731|ref|ZP_01725649.1| flagellar biosynthesis protein R [Bacillus sp. B14905]
gi|126589695|gb|EAZ83831.1| flagellar biosynthesis protein R [Bacillus sp. B14905]
Length = 257
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 103/242 (42%), Gaps = 6/242 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L++ RV + + +P S IP QV++ A+ + ++ TID++ F
Sbjct: 8 LTVFLLVLVRVSAFFVTVPFFSYRTIPPQVKITLALVLAWMMY----YTIDVEPFAFNDE 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LVM E +G + GL+ + +Q GS I +G + + +
Sbjct: 64 YILLVMKEALVGLLLGLVGYIIMSAIQIAGSFIDFQMGFAIANIIDPQTGAQSPLIGQFF 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLS 186
++ L L I+ HH + + SY +P+ Q +F N + F I +++
Sbjct: 124 NMLAFLLLLAINGHHMILDGIYYSYQFLPMDQFPSFTNEGFPQFIITTFTAVFAIAFQMA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+P + + ++++G+ K VPQ+ I+ + P I + L L + +++
Sbjct: 184 APVVATLFLVDLALGITAKTVPQLNIFVVGFPIKIAVSFLVLFTMMAVMIQVIQKLITIM 243
Query: 247 FF 248
+
Sbjct: 244 IY 245
>gi|169827138|ref|YP_001697296.1| flagellar biosynthesis protein FliR [Lysinibacillus sphaericus
C3-41]
gi|168991626|gb|ACA39166.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
Length = 257
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 104/242 (42%), Gaps = 6/242 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L++ RV + + +P S IP QV++ A+ + ++ TID++ F
Sbjct: 8 LTVFLLVLVRVSAFFVTVPFFSYRTIPPQVKITLALVLAWMMY----YTIDVEPFAFNDD 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LVM E +G + GL+ + +Q GS I +G + + +
Sbjct: 64 YILLVMKEALVGLLLGLVGYIIMSAIQIAGSFIDFQMGFAIANIIDPQTGAQSPLIGQFF 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRLS 186
++ L L I+ HH + + SY +P+ Q +F N + F I +++
Sbjct: 124 NMLAFLLLLAINGHHMILDGIYYSYQFLPMDQFPSFTNDSFPQFIITTFTAVFAIAFQMA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+P + + ++++G+ K VPQ+ I+ + P IG+ L L + +++
Sbjct: 184 APVVATLFLVDLALGITAKTVPQLNIFVVGFPIKIGVSFLVLFTMMAVMIQVIQKLITIM 243
Query: 247 FF 248
+
Sbjct: 244 IY 245
>gi|15642120|ref|NP_231752.1| flagellar biosynthesis protein FliR [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121586827|ref|ZP_01676609.1| flagellar biosynthetic protein FliR [Vibrio cholerae 2740-80]
gi|121727225|ref|ZP_01680392.1| flagellar biosynthetic protein FliR [Vibrio cholerae V52]
gi|147673452|ref|YP_001217642.1| flagellar biosynthesis protein FliR [Vibrio cholerae O395]
gi|153213230|ref|ZP_01948642.1| flagellar biosynthetic protein FliR [Vibrio cholerae 1587]
gi|153803024|ref|ZP_01957610.1| flagellar biosynthetic protein FliR [Vibrio cholerae MZO-3]
gi|153818966|ref|ZP_01971633.1| flagellar biosynthetic protein FliR [Vibrio cholerae NCTC 8457]
gi|153822888|ref|ZP_01975555.1| flagellar biosynthetic protein FliR [Vibrio cholerae B33]
gi|153825611|ref|ZP_01978278.1| flagellar biosynthetic protein FliR [Vibrio cholerae MZO-2]
gi|153828645|ref|ZP_01981312.1| flagellar biosynthetic protein FliR [Vibrio cholerae 623-39]
gi|227082246|ref|YP_002810797.1| flagellar biosynthetic protein FliR [Vibrio cholerae M66-2]
gi|229507794|ref|ZP_04397299.1| flagellar biosynthesis protein FliR [Vibrio cholerae BX 330286]
gi|229511969|ref|ZP_04401448.1| flagellar biosynthesis protein FliR [Vibrio cholerae B33]
gi|229513772|ref|ZP_04403234.1| flagellar biosynthesis protein FliR [Vibrio cholerae TMA 21]
gi|229519105|ref|ZP_04408548.1| flagellar biosynthesis protein FliR [Vibrio cholerae RC9]
gi|229522074|ref|ZP_04411491.1| flagellar biosynthesis protein FliR [Vibrio cholerae TM 11079-80]
gi|229524123|ref|ZP_04413528.1| flagellar biosynthesis protein FliR [Vibrio cholerae bv. albensis
VL426]
gi|229607339|ref|YP_002877987.1| flagellar biosynthesis protein FliR [Vibrio cholerae MJ-1236]
gi|254226358|ref|ZP_04919947.1| flagellar biosynthetic protein FliR [Vibrio cholerae V51]
gi|254291357|ref|ZP_04962150.1| flagellar biosynthetic protein FliR [Vibrio cholerae AM-19226]
gi|254849206|ref|ZP_05238556.1| flagellar biosynthesis protein FliR [Vibrio cholerae MO10]
gi|255745140|ref|ZP_05419089.1| flagellar biosynthesis protein FliR [Vibrio cholera CIRS 101]
gi|262153470|ref|ZP_06028600.1| flagellar biosynthesis protein FliR [Vibrio cholerae INDRE 91/1]
gi|262167480|ref|ZP_06035186.1| flagellar biosynthesis protein FliR [Vibrio cholerae RC27]
gi|262191370|ref|ZP_06049560.1| flagellar biosynthesis protein FliR [Vibrio cholerae CT 5369-93]
gi|298497857|ref|ZP_07007664.1| flagellar biosynthetic protein FliR [Vibrio cholerae MAK 757]
gi|9656671|gb|AAF95266.1| flagellar biosynthetic protein FliR [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121548994|gb|EAX59033.1| flagellar biosynthetic protein FliR [Vibrio cholerae 2740-80]
gi|121630470|gb|EAX62863.1| flagellar biosynthetic protein FliR [Vibrio cholerae V52]
gi|124116030|gb|EAY34850.1| flagellar biosynthetic protein FliR [Vibrio cholerae 1587]
gi|124121422|gb|EAY40165.1| flagellar biosynthetic protein FliR [Vibrio cholerae MZO-3]
gi|125621108|gb|EAZ49453.1| flagellar biosynthetic protein FliR [Vibrio cholerae V51]
gi|126510461|gb|EAZ73055.1| flagellar biosynthetic protein FliR [Vibrio cholerae NCTC 8457]
gi|126519584|gb|EAZ76807.1| flagellar biosynthetic protein FliR [Vibrio cholerae B33]
gi|146315335|gb|ABQ19874.1| flagellar biosynthetic protein FliR [Vibrio cholerae O395]
gi|148875916|gb|EDL74051.1| flagellar biosynthetic protein FliR [Vibrio cholerae 623-39]
gi|149740762|gb|EDM54861.1| flagellar biosynthetic protein FliR [Vibrio cholerae MZO-2]
gi|150422687|gb|EDN14641.1| flagellar biosynthetic protein FliR [Vibrio cholerae AM-19226]
gi|227010134|gb|ACP06346.1| flagellar biosynthetic protein FliR [Vibrio cholerae M66-2]
gi|227014017|gb|ACP10227.1| flagellar biosynthetic protein FliR [Vibrio cholerae O395]
gi|229337704|gb|EEO02721.1| flagellar biosynthesis protein FliR [Vibrio cholerae bv. albensis
VL426]
gi|229340999|gb|EEO06004.1| flagellar biosynthesis protein FliR [Vibrio cholerae TM 11079-80]
gi|229343794|gb|EEO08769.1| flagellar biosynthesis protein FliR [Vibrio cholerae RC9]
gi|229348953|gb|EEO13910.1| flagellar biosynthesis protein FliR [Vibrio cholerae TMA 21]
gi|229351934|gb|EEO16875.1| flagellar biosynthesis protein FliR [Vibrio cholerae B33]
gi|229355299|gb|EEO20220.1| flagellar biosynthesis protein FliR [Vibrio cholerae BX 330286]
gi|229369994|gb|ACQ60417.1| flagellar biosynthesis protein FliR [Vibrio cholerae MJ-1236]
gi|254844911|gb|EET23325.1| flagellar biosynthesis protein FliR [Vibrio cholerae MO10]
gi|255736970|gb|EET92366.1| flagellar biosynthesis protein FliR [Vibrio cholera CIRS 101]
gi|262024052|gb|EEY42747.1| flagellar biosynthesis protein FliR [Vibrio cholerae RC27]
gi|262030707|gb|EEY49341.1| flagellar biosynthesis protein FliR [Vibrio cholerae INDRE 91/1]
gi|262032745|gb|EEY51293.1| flagellar biosynthesis protein FliR [Vibrio cholerae CT 5369-93]
gi|297542190|gb|EFH78240.1| flagellar biosynthetic protein FliR [Vibrio cholerae MAK 757]
gi|327484649|gb|AEA79056.1| Flagellar biosynthesis protein FliR [Vibrio cholerae LMA3894-4]
Length = 260
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 93/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++P +VRL +A + ++P + ++
Sbjct: 11 FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L V D H ++ +V S+ ++PIG F L F L +S
Sbjct: 130 FMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + +
Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEA 248
>gi|297584053|ref|YP_003699833.1| flagellar biosynthetic protein FliR [Bacillus selenitireducens
MLS10]
gi|297142510|gb|ADH99267.1| flagellar biosynthetic protein FliR [Bacillus selenitireducens
MLS10]
Length = 259
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/250 (19%), Positives = 103/250 (41%), Gaps = 7/250 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M I + + L++ RV + ++ LP S IP + ++ FA S +++ + D
Sbjct: 1 MEIEIIEWIPAFLLVLVRVSAFMVTLPFFSYQTIPNRFKIGFAAFLSWIMI----FSGDW 56
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ L + E +G GL+ + +Q G +I +G + +
Sbjct: 57 PIIELNYEFVLLAIKEALVGLTVGLIALLLLYAIQVAGGLIDLKLGFLIANVVDPQTGTQ 116
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQT 177
+ S + LL L + HH + + SY IP+ Q + + T
Sbjct: 117 APLIGSYLYTFALLFLLATNAHHLLLDGVYYSYEFIPLDQTFLPLGSEDYVEFIGVTMNT 176
Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
F+I ++S P + + ++++G + + VPQ+ ++ I P I LG +F+ +++ +
Sbjct: 177 MFIIAFQMSMPIMGSIFLVDVALGFIARTVPQVNVFVIGFPVKIFLGFVFMIVTMPVFFV 236
Query: 238 QFSHSFLYGF 247
++
Sbjct: 237 LVNNLIETVL 246
>gi|149928150|ref|ZP_01916396.1| Bacterial export protein, family 1 [Limnobacter sp. MED105]
gi|149823135|gb|EDM82373.1| Bacterial export protein, family 1 [Limnobacter sp. MED105]
Length = 254
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 5/238 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
EI + S R+ + + P + + R+ A +I+++P L ++
Sbjct: 10 EIWIASFLWPFIRILAILATAPVFDNRTVQRRTRVGLAALIAILMMPLL----PAPPVLS 65
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A +++ ++ +G G +R+ + G ++ +GL + + +
Sbjct: 66 SAQAIPVLIQQILIGVAMGFSMRLVFAAFEMAGDLLGLQMGLAFAQFIDPARGTQTPLIG 125
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
S +G++ +L VID H V A+V+S+ IPI L N S FM+ L++
Sbjct: 126 SFLGVLAMLTFLVIDGHLLVIAAVVQSFELIPISANLAVVNS-QSIAMAGSIMFMLALQI 184
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S P + ++ NI +G+L + PQ+ + I IG+G L +S+ + +
Sbjct: 185 SLPVMAAVLISNIVLGILARAAPQLNVMSIGFSITIGVGLWILWVSLPYFIAGIDGAI 242
>gi|154686054|ref|YP_001421215.1| flagellar biosynthesis protein FliR [Bacillus amyloliquefaciens
FZB42]
gi|154351905|gb|ABS73984.1| FliR [Bacillus amyloliquefaciens FZB42]
Length = 259
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 99/239 (41%), Gaps = 6/239 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P +P R+ FA S++ L +++
Sbjct: 7 LFPAFLLVFIRISAFFVTVPVFGHRNLPAVHRIGFAFFLSVICFSTLKHAPEIEI---GE 63
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y LV+ E +G GL+ + +Q GS I +G ++ + +
Sbjct: 64 QYMLLVIKEAVVGLSLGLIAFMMMTAIQIAGSFIDFQMGFSIANVIDPQSGTQSPLIGQF 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLR 184
+ + LL + I+ H+ + + S+ IP+ Q + F+I +
Sbjct: 124 VYTLALLFMLSINAHYLLLDGIYYSFQYIPLDQAFPSFGNDHFGLFIAKSFNAMFIIAFQ 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+S+P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ + F
Sbjct: 184 MSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMAVMFVVVRNIF 242
>gi|307131601|ref|YP_003883617.1| flagellar biosynthesis protein fliR [Dickeya dadantii 3937]
gi|306529130|gb|ADM99060.1| Flagellar biosynthesis protein fliR [Dickeya dadantii 3937]
Length = 260
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+I F + R+ + I P S I +V++ + +IV+ P + T
Sbjct: 6 SIDMIGWFNQFFWPLVRILALISTAPIFSERSITRRVKIGLGVLITIVITPSIPHT---S 62
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
V A ++ ++ +G + G +++ ++ G +I +GL+ T S
Sbjct: 63 IPVFSAAGIWMLFQQVLIGVMLGFAMQLAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNM 122
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ L+ ++ LL ++ H + LV S+ TIPI E GN+F + F
Sbjct: 123 PVIARLMNLLALLLFLSMNGHLWLISLLVDSFHTIPISAEPISGNVFMTLAEAGGRIFSN 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L L+ P + + N+++GLL++L PQ+ I+ I P + G + + I ++
Sbjct: 183 GLMLALPLITLLLTINMALGLLSRLAPQLTIFAIGFPITLFAGIITVGFLIFLLSPYAEK 242
Query: 242 SFLYGF 247
F +
Sbjct: 243 LFGETY 248
>gi|323490156|ref|ZP_08095376.1| flagellar biosynthesis protein FliR [Planococcus donghaensis
MPA1U2]
gi|323396204|gb|EGA89030.1| flagellar biosynthesis protein FliR [Planococcus donghaensis
MPA1U2]
Length = 259
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 6/239 (2%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L++ R+ S +L P SM +P Q ++ A + V + L + + + Y
Sbjct: 11 FLLMLVRLTSFFLLAPVFSMRGVPTQFKVGIAAFLAFVAVSTLPIG---ETILLDSSYIL 67
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ EL G G + +Q G+ I +G ++ + + ++
Sbjct: 68 LIIKELATGLALGFTAALVLYTVQIAGAFIDFQMGFSMANVLDPQTGAQVPIIGHFKYMM 127
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSSP 188
LL L ++ HH + +++S P+ + G+I ++ FMI L+++ P
Sbjct: 128 ALLFLLTVNGHHLMLDGVMQSLRVFPVERLAISVEAGDIAQFMTSLFVEMFMIALQIALP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + +I++G+L K VPQ+ I+ + P I +G + L L++ + Y F
Sbjct: 188 IVGALFLVDIALGILAKTVPQLNIFAVGLPLKIFVGFIMLFLTMPVFFYILQILFEKLL 246
>gi|299534769|ref|ZP_07048099.1| flagellar biosynthesis protein FliR [Lysinibacillus fusiformis ZC1]
gi|298729857|gb|EFI70402.1| flagellar biosynthesis protein FliR [Lysinibacillus fusiformis ZC1]
Length = 257
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 6/242 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L++ RV + +P S IP QV++ A+ + ++ TID++ F
Sbjct: 8 LTVFLLVLVRVSAFFATVPFFSYRTIPPQVKITLALVLAWMMY----YTIDVEPFAFNDD 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LVM E +G + GL+ + +Q GS I +G + + +
Sbjct: 64 YILLVMKEALVGLLLGLMGYIIMSAIQIAGSFIDFQMGFAIANIIDPQTGAQSPLIGQFF 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLS 186
++ LL L ID HH + + SY P+ Q N + F I +++
Sbjct: 124 NMLALLLLLAIDGHHMILNGIYYSYQFFPMDQFPSFMNENFPQFIITTFTAVFAIAFQMA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+P + + ++++G+ K VPQ+ I+ + P IG+ L L + +++
Sbjct: 184 APVVATLFLVDLALGITAKTVPQLNIFVVGFPIKIGVSFLVLFTMMAVMIQVIQKLITIM 243
Query: 247 FF 248
+
Sbjct: 244 IY 245
>gi|68164508|gb|AAY87237.1| predicted flagellar biosynthetic protein [uncultured bacterium
BAC17H8]
Length = 270
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 100/241 (41%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ FL R+G+ ++ P ++P++VR+ A + ++ + D + +
Sbjct: 19 GVLLQYFLASLRIGAFLLSAPIFGARWLPLKVRIIMAFTLAAAIVGDVPDV--GTDLLTS 76
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ +E+ +G GL + ++ + G I+++ GL + + ++
Sbjct: 77 SVGVSMMFIEIAIGLTAGLTLTIWFAAVLLAGEKIASSAGLGYAAQVDPATGGQTPVVSQ 136
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ + L+ ID H +++SY +P+G + + +S + + F+ +
Sbjct: 137 ILYLFLLVIFLSIDGHLLAIGTMLESYRILPVGASVAPEVLIASGITAAGSMFLAATIIM 196
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P ++ N++IG++ + PQ+ ++ P + L L S
Sbjct: 197 LPITTVLLMINVAIGIITRSAPQLNLFSFGFPISLLAVFLLLFFSAGAFGTSSQSLIDSA 256
Query: 247 F 247
Sbjct: 257 L 257
>gi|325920562|ref|ZP_08182484.1| flagellar biosynthetic protein FliR [Xanthomonas gardneri ATCC
19865]
gi|325548955|gb|EGD19887.1| flagellar biosynthetic protein FliR [Xanthomonas gardneri ATCC
19865]
Length = 263
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A S+VL P L + F +
Sbjct: 16 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLSMVLAPLLPPVPEWDGFTAQ 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A V EL +G G ++++ G ++S + GL+ + +
Sbjct: 76 A--VLSVARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPLRGVTSGVIAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG + F+ + L L
Sbjct: 134 WFYIGFGLLFFAANGHLAVISLLVDSYKALPIGTAVPDAAAFAEVAPTLFLQILRGGLTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 194 ALPMMVAMLAVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|308173600|ref|YP_003920305.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
gi|307606464|emb|CBI42835.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens DSM 7]
gi|328553468|gb|AEB23960.1| flagellar biosynthesis protein FliR [Bacillus amyloliquefaciens
TA208]
gi|328911741|gb|AEB63337.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens LL3]
Length = 259
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 96/239 (40%), Gaps = 6/239 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P +P R+ FA S++ L +
Sbjct: 7 LFPAFLLVFIRISAFFVTVPVFGHRNLPAVHRIGFAFFLSVICFSTLKHAPAIDI---GE 63
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y LV+ E +G GL+ + +Q GS I +G ++ + +
Sbjct: 64 QYMLLVIKEAVVGLSLGLIAFMMMAAIQIAGSFIDFQMGFSIANVIDPQSGTQSPLIGQF 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN---IFSSFVNMLQTTFMIMLR 184
+ + LL + ++ H+ + + S+ IP+ Q F+I +
Sbjct: 124 VYTLALLFMLSVNAHYLLLDGIYYSFQYIPLDQAFPSFGNDRFGLFIAKSFNAMFIIAFQ 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+S+P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ + F
Sbjct: 184 MSAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMAVMFVIVRNIF 242
>gi|307945651|ref|ZP_07660987.1| flagellar biosynthetic protein FliR [Roseibium sp. TrichSKD4]
gi|307771524|gb|EFO30749.1| flagellar biosynthetic protein FliR [Roseibium sp. TrichSKD4]
Length = 257
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 1/239 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
L+ R+G+ IML+P L + IP ++RL A+ ++VL P + + N A
Sbjct: 13 AIFLLMFARIGTLIMLMPALGETSIPTRIRLTIALGITLVLYPVISGSYPAGLTDNPARL 72
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE-TPLNSLI 128
+ E+ +G GL IR++T LQ G +++ GL +++ + T + +
Sbjct: 73 LVFMGGEMIIGFAVGLCIRLFTTTLQTAGVIMANQSGLAFAFGADLANGGQQGTLFGNYL 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++G+ ++ D H+ V AL S+ P G+ + G+ ++ N + F I LR+S+P
Sbjct: 133 SMVGIAMVFATDSHYLVIAALHDSFTLFPPGELVPVGDFVTNATNTVAEVFSIALRMSAP 192
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
F+ +VF +GLLNKL+PQ+ I+FI+ P I +G L + + ++ + F
Sbjct: 193 FIVMGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIGFFLLMVLLSTLMAFYLDHFEGAL 251
>gi|317129191|ref|YP_004095473.1| flagellar biosynthetic protein FliR [Bacillus cellulosilyticus DSM
2522]
gi|315474139|gb|ADU30742.1| flagellar biosynthetic protein FliR [Bacillus cellulosilyticus DSM
2522]
Length = 259
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 99/243 (40%), Gaps = 7/243 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L++ RV + ++ LP S IP +++ A+ S ++ D
Sbjct: 6 QWLPAFMLVLVRVSAFLITLPFFSYQNIPAPLKIGLALFISWIMFFA----GDWPALEIN 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ L++ E +G GL+ + +Q G +I +GL + + S
Sbjct: 62 YHFYLLIIKEALVGLTVGLIAMILLYAIQVAGGIIDYKMGLMIANVIDPQTGAQSPLTGS 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIML 183
+ +L L D HH + + SY IP+ Q I V T F+I
Sbjct: 122 YLYTFSILFLLATDAHHLLLDGVFYSYQFIPMDQLFIPFGNEAILDHVVVTFSTMFLIAF 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+++ P + + ++++G++++ VPQI ++ + P + +G + L L + +
Sbjct: 182 QMAMPIVGSIFLVDLALGMVSRAVPQINVFVVGMPLKVLVGFILLLLVMAPFFMVVNQLI 241
Query: 244 LYG 246
Sbjct: 242 ETM 244
>gi|157376186|ref|YP_001474786.1| flagellar biosynthesis protein FliR [Shewanella sediminis HAW-EB3]
gi|157318560|gb|ABV37658.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3]
Length = 265
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 96/239 (40%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ S + RV S +M++ + P++VRL +MA + + P L +++ F +
Sbjct: 11 TIASYMWPLFRVSSMLMVMAVFGANTTPVRVRLLLSMAITFAIAPVLPPVENIELFALSS 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G G + + TG +I L + + S + +
Sbjct: 71 VFVT--AQQILIGVAMGFVTLLVMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ + +D H + LV S+ TIPI + + F L +S
Sbjct: 129 FLLLTTMIFLSVDGHLVLIRMLVVSFETIPISDQGLSITSYKLLAEWGAYMFGAALTMSI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G + L L++ I+ F +
Sbjct: 189 TAIVALLLINLSFGVMTRASPQLNIFAIGFPVTMVSGLIILWLTLTPIMEHFGEVWRAA 247
>gi|289666113|ref|ZP_06487694.1| flagellar biosynthetic protein FliR [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 263
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A ++VL P L + F +
Sbjct: 16 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQ 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + EL +G G ++++ G ++S + GL+ + +
Sbjct: 76 S--VLSIARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG L F+ + L L
Sbjct: 134 WFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 194 ALPMMVAMLAVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|167552786|ref|ZP_02346537.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205322619|gb|EDZ10458.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 264
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + V + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLCVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|157959921|ref|YP_001499955.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC
700345]
gi|157844921|gb|ABV85420.1| flagellar biosynthetic protein FliR [Shewanella pealeana ATCC
700345]
Length = 259
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 105/246 (42%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ + + + CR+ M++P LS +YIP+ VR+ A+ S ++ P L ++
Sbjct: 6 STELSTFIGTFWWPFCRIMGAFMVMPFLSSTYIPVTVRILLALTLSALIAPMLPPLPEVD 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+A L + +L +G + L + + + G ++S +GL + S +
Sbjct: 66 AISIQA--LLLAIEQLLVGFMMALFLTIMLYVMTQLGEMLSMQMGLAMAVMNDPSSGGSH 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
L + G L V+D H LV S+ P+G + + + + F +
Sbjct: 124 PILGQWFLLYGTLVFLVLDGHLVAIGVLVDSFRLWPVGMGVFDLPLM-GLIGRISWLFAV 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L+ P + ++ NI+ G+L++ P + ++ + P + +G L + S + ++S
Sbjct: 183 SFMLAIPSILAMLMVNITFGVLSRSAPSLNVFALGFPMSMLMGLLCVFFSFSGLPSRYSD 242
Query: 242 SFLYGF 247
L
Sbjct: 243 LCLDAL 248
>gi|52842014|ref|YP_095813.1| flagellar biosynthetic protein FliR [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|148359331|ref|YP_001250538.1| flagellar biosynthetic protein FliR [Legionella pneumophila str.
Corby]
gi|296107378|ref|YP_003619078.1| flagellar biosynthetic protein FliR [Legionella pneumophila 2300/99
Alcoy]
gi|52629125|gb|AAU27866.1| flagellar biosynthetic protein FliR [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|148281104|gb|ABQ55192.1| flagellar biosynthetic protein FliR [Legionella pneumophila str.
Corby]
gi|295649279|gb|ADG25126.1| flagellar biosynthetic protein FliR [Legionella pneumophila 2300/99
Alcoy]
gi|307610487|emb|CBX00059.1| flagellar biosynthetic protein fliR [Legionella pneumophila 130b]
Length = 256
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 110/239 (46%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+M + R+G ++ +P LS + +P ++++ F S V ++ + +NF
Sbjct: 11 LMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENF--NG 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y ++ EL LG + G ++++ G +IS GL + + + + ++ L
Sbjct: 69 LYLVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L ++ H + L++S+ +PIG+ ++ S + F + +S
Sbjct: 129 YLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSVVWSTIMFSGWMFKEAVLISI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ ++S G++ ++ PQ+ ++ + P + +G + + + + + + S +G
Sbjct: 189 PAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEMVESIKHG 247
>gi|309779457|ref|ZP_07674218.1| flagellar biosynthetic protein FliR [Ralstonia sp. 5_7_47FAA]
gi|308921698|gb|EFP67334.1| flagellar biosynthetic protein FliR [Ralstonia sp. 5_7_47FAA]
Length = 264
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 96/241 (39%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV + I + P + + IP +++ F + ++ L P L +
Sbjct: 11 GWIAMYWWPLVRVLAFIAIAPPFANTEIPTSIKVAFGVVITVALAPMLPVPAGVSVGSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV ++ +G V G +++ + G V+S +GL + + + + + L
Sbjct: 71 GLWITLV--QVLIGLVLGFCVQLVFSAISGAGEVMSVQMGLGFASLLDPTQTESSMLLGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + A D H + +AL S+ +P+ + + F + LR++
Sbjct: 129 FLSLTAVTAFIAGDGHLVLLHALFDSFTALPVSAAPLGNPGWQTLAGGGTIVFALALRIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+ +L++ + + + + +G + + + + + S +
Sbjct: 189 LPIIAIMMIVNLGFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|161502897|ref|YP_001570009.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864244|gb|ABX20867.1| hypothetical protein SARI_00956 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 264
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + LV ++ T+PIG N F + F+ L L+
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALAKAGGLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 189 PIITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 248
>gi|224370772|ref|YP_002604936.1| FliR [Desulfobacterium autotrophicum HRM2]
gi|223693489|gb|ACN16772.1| FliR [Desulfobacterium autotrophicum HRM2]
Length = 262
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/234 (20%), Positives = 99/234 (42%), Gaps = 1/234 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L++ RV + +LP + P V+ AM S++L + DL
Sbjct: 15 FLLVLARVSIVLFMLPIFGTTMFPTMVKAGLAMVISMLLYSVVQLDPDLLPETAMGMGIF 74
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV E +G GL +R++ Q G VI +G ++ + + + L +
Sbjct: 75 LV-SEAMIGLTLGLCVRLFFGSFQLAGEVIGFQMGFSMINVVDPQSGANVSLMEQLAYWV 133
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
LL ++ HH + +LV S+ + G + + + + F++ +++ +P +
Sbjct: 134 ALLVFLAMNGHHIMLLSLVDSFELVQPGSFVFQQIMVDKVIFLGSQMFILAIKIGAPVIA 193
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ +++ GL K PQ+ + ++ P I +G + LS+EII+ +
Sbjct: 194 ALLFTSVAFGLTAKFSPQMNVMIVAFPLKIIVGLVLFGLSLEIIIIVARTYIIE 247
>gi|254502657|ref|ZP_05114808.1| flagellar biosynthetic protein FliR [Labrenzia alexandrii DFL-11]
gi|222438728|gb|EEE45407.1| flagellar biosynthetic protein FliR [Labrenzia alexandrii DFL-11]
Length = 257
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 1/239 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ R+G+ IMLLP L S IP + RL A+A ++VL P N A
Sbjct: 13 AAFMLMFARLGTMIMLLPALGESSIPTRFRLTIALAMTLVLYPVGSQLYPADLVSNPAQL 72
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL-NSLI 128
L++ E+ +G GL ++ T +Q G +++ GL IS+ + L + +
Sbjct: 73 GVLLISEIVIGVAIGLCAKLVTSAVQIAGVIMANQSGLAFALGTDISNEGQQGALYGNFL 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++G+ ++ D H+ V AL S+ P G G+ +F + F I +R+S+P
Sbjct: 133 ALVGITLIFTTDTHYLVIAALHDSFTLFPPGSMPPVGDFSENFAETVAMVFSIAVRMSAP 192
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
FL +VF +GLLNKL+PQ+ I+FI+ P I +G L + I ++ +
Sbjct: 193 FLVVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIGFFLLMVLISTLMMFYLEHVQQAL 251
>gi|309388836|gb|ADO76716.1| flagellar biosynthetic protein FliR [Halanaerobium praevalens DSM
2228]
Length = 261
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 90/237 (37%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ FLI+ R ++L P S I + ++ A+ + P + N
Sbjct: 11 LYFFFLILSRYLGMMLLTPFFSSQVIFYRAKILIALTLAAFSYPLVLSIYQPLAPANNLS 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ E +G GL + + +Q G +I +G + + + L
Sbjct: 71 LIIEIISEFSIGLFMGLAVFLVFSAIQLGGQIIDMRMGFRIANVVDPFSGANSPVIGQLK 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
I L ++ H + L S+ IP G+ ++ F F++ ++++ P
Sbjct: 131 NIFVTLIFLALNGHLYLIKHLYNSFKIIPPGRVKFSNQLWQYFFRRSADMFVLAIKIALP 190
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+I + L + VPQ+ ++ I P I G + L + + ++ + ++ +
Sbjct: 191 IAGAIFFIDIILAFLARSVPQMNLFVIGLPIKIMAGLILLYILMPVLNHYYAEIIMN 247
>gi|89899373|ref|YP_521844.1| flagellar biosynthetic protein FliR [Rhodoferax ferrireducens T118]
gi|89344110|gb|ABD68313.1| flagellar biosynthetic protein FliR [Rhodoferax ferrireducens T118]
Length = 240
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 90/234 (38%), Gaps = 2/234 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
RV + P S P++ R+ A + P L + ++
Sbjct: 2 IWPFLRVLAVFTAAPLFSSKAFPLRARIGLAFFIAFAAQPSLQGQPIIS--ISGPEAMGA 59
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
V ++ +G G +R+ ++ G V+ +GL + + + + + G +
Sbjct: 60 VAQQVGIGLAIGFTVRLVFAAVELAGEVVGFQMGLGFASFFNPALNTQSSAVARFFGQMA 119
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
V++ H V A++KS+ P+ Q + F L ++ P +
Sbjct: 120 TFLFVVMNGHLMVLMAVIKSFDKFPVNQNFLEAIGQMKIYDFGTDLFASGLWIALPMVGM 179
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ N+++G+++++ PQ+ I+ I P + +G + + ++ ++ F
Sbjct: 180 LLFANLALGIVSRVAPQMNIFAIGFPVTLTVGMVGIAATLPMLDQPFMTLMERA 233
>gi|271500074|ref|YP_003333099.1| flagellar biosynthetic protein FliR [Dickeya dadantii Ech586]
gi|270343629|gb|ACZ76394.1| flagellar biosynthetic protein FliR [Dickeya dadantii Ech586]
Length = 260
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/246 (21%), Positives = 103/246 (41%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+I F + R+ + I P S I +V++ + +IV+ P +
Sbjct: 6 SIDMIGWFNQFFWPLVRILALISTAPIFSERAITRRVKIGIGVLITIVIAPNIP---HAS 62
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+ A ++ ++ +G + G +++ ++ G +I +GL+ T S
Sbjct: 63 IPIFSATGVWMLFQQVVIGVMLGFTMQLAFAAIRLAGEIIGLQMGLSFATFFDPSGGPNM 122
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ + ++ LL ++ H + LV S+ TIPIG GN+F + F
Sbjct: 123 PVIARFMNLLALLLFLSMNGHLWLISLLVDSFHTIPIGASPVSGNVFMTLAGAGGRIFSN 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L L+ P + + N+++GLL++L PQ+ I+ I P + G + + I +I
Sbjct: 183 GLMLALPLITLLLTINMALGLLSRLAPQLTIFAIGFPITLFTGIITVGFLIFLISPYAEK 242
Query: 242 SFLYGF 247
F +
Sbjct: 243 LFGETY 248
>gi|297582019|ref|ZP_06943938.1| flagellar biosynthetic protein FliR [Vibrio cholerae RC385]
gi|297533714|gb|EFH72556.1| flagellar biosynthetic protein FliR [Vibrio cholerae RC385]
Length = 260
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 95/239 (39%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++P +VRL +A ++ ++P + ++
Sbjct: 11 FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTLAVMPAIPAVPSGIALLSLQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MITLEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L V D H ++ +V S+ ++PIG F L F L +S
Sbjct: 130 FMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + +
Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEA 248
>gi|92114090|ref|YP_574018.1| flagellar biosynthetic protein FliR [Chromohalobacter salexigens
DSM 3043]
gi|91797180|gb|ABE59319.1| flagellar biosynthetic protein FliR [Chromohalobacter salexigens
DSM 3043]
Length = 261
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 91/241 (37%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F R+ + + P + +P Q + + + P L D
Sbjct: 11 EWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPPMPDTPIVSIG 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+++ E+ +G G+++RV +Q G I +GL T L+
Sbjct: 71 G--LGILIQEMLIGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVG-NSMVLSR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ +I LL ++ H L S+ T+P+G G+ F + ++
Sbjct: 128 IFQMITLLMFLALNGHLIALEILANSFQTLPVGGPRVDGSAGEVIARWGGEIFTSGVLMA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQ+ I+ I P + G + L + ++ F
Sbjct: 188 LPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRFLEILFSNS 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|78047542|ref|YP_363717.1| flagellar biosynthesis pathway component FliR [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325925987|ref|ZP_08187353.1| flagellar biosynthetic protein FliR [Xanthomonas perforans 91-118]
gi|78035972|emb|CAJ23663.1| flagellar biosynthesis pathway component FliR [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325543583|gb|EGD15000.1| flagellar biosynthetic protein FliR [Xanthomonas perforans 91-118]
Length = 263
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A ++VL P L + F +
Sbjct: 16 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQ 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G ++++ G ++S + GL+ + +
Sbjct: 76 A--VLSIARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
+ L + + H V LV SY +PIG L F+ + L L
Sbjct: 134 WFYLGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 194 ALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|150390467|ref|YP_001320516.1| flagellar biosynthesis protein FliR [Alkaliphilus metalliredigens
QYMF]
gi|149950329|gb|ABR48857.1| flagellar biosynthetic protein FliR [Alkaliphilus metalliredigens
QYMF]
Length = 263
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 104/237 (43%), Gaps = 2/237 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L++ R+ ++ P S + IPM ++ F++ ++++LP + + D A
Sbjct: 15 FILLIVRISGIFIIAPIFSRNNIPMMSKIIFSVFLALIILPLVTISEDFAANTFFALMVY 74
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ E LG G + +Y G ++ T IG + + + ++ ++
Sbjct: 75 AI-QEFALGITIGFIGSIYFSTFYLAGMIVDTQIGFGMVNVFDPQMNTQLPIMGNVYNLL 133
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
L ++ HH + A+ SY +PIG Q + + FM+ +LS+P L
Sbjct: 134 ISLVFLAVNGHHLLIKAMFDSYDVLPIGFQFQVSEALIMHLTIIFMEIFMMAFKLSAPIL 193
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ N+ +G+L + +PQ+ ++ + P I +G + + +++ +V + F F
Sbjct: 194 ATIFLANVLLGILARTMPQMNVFIVGMPLKIIVGLVTIMIALPFLVPFGNALFEKMF 250
>gi|123442776|ref|YP_001006753.1| flagellar biosynthesis protein FliR [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089737|emb|CAL12590.1| flagellar biosynthetic protein FliR [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 260
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + F + R+ + I P LS I +V++ A+ + ++ P L + +
Sbjct: 10 SVWVSQYFWPLIRILALISTAPVLSEKQINRKVKVGLAVLITFLIAPSLP---PVNIPLV 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 67 SSGALWVAGQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ +L D H + L S+ T+PI E GN F + FM L L
Sbjct: 127 RLLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMNGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F
Sbjct: 187 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFTEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 FF 248
>gi|238764400|ref|ZP_04625350.1| Flagellar biosynthetic protein fliR [Yersinia kristensenii ATCC
33638]
gi|238697426|gb|EEP90193.1| Flagellar biosynthetic protein fliR [Yersinia kristensenii ATCC
33638]
Length = 260
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + F + R+ + I P LS I +V++ A+ + ++ P L + +
Sbjct: 10 SVWVSQYFWPLIRILALISTAPVLSEKQINRKVKVGLAILITFLIAPSLP---PVNIPLV 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + ++ +G GL ++ ++ +G VI +GL+ T S L
Sbjct: 67 SSGAVWVAGQQILIGAAIGLTMQFAFAAIRLSGEVIGLQMGLSFATFFDPSGGPNMPVLA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ +L D H + L S+ T+PI E GN F + FM L L
Sbjct: 127 RLLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALAQAGSLIFMNGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L++ ++ H F
Sbjct: 187 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLAMPLLAPFTEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 FF 248
>gi|322432983|ref|YP_004210232.1| flagellar biosynthetic protein FliR [Acidobacterium sp. MP5ACTX9]
gi|321165210|gb|ADW70914.1| flagellar biosynthetic protein FliR [Acidobacterium sp. MP5ACTX9]
Length = 258
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/246 (20%), Positives = 101/246 (41%), Gaps = 3/246 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M I I+ + I R+ ++ P L + IP +++ +A + V+ P + ++
Sbjct: 1 MQIPFADIIQAFLAIGVRLSGLMLFAPFLGSAVIPARIKAVLVVALTFVIYPLVSRSLTP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q + LV EL +G G+ V +Q G ++S +G +L + + +
Sbjct: 61 QPLNDWP---LLVFRELLVGVSIGIATSVVFEAVQMAGQILSIQMGYSLINILDPNTQVD 117
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
T + I +L +D H + A+ S+ +P G + +
Sbjct: 118 TTVIAMFHQSIAMLIFLRLDVHLWLIRAIGNSFTYLPPGGAQLSRPFMFTLIGAGSAILS 177
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I +++++P L ++ +I +GLL K PQ+P+ + LG L S++ F
Sbjct: 178 IGVQIAAPVLSATLLTDIVLGLLGKASPQLPLMLLGPAVKSLLGLAILFTSLKYWPDMFR 237
Query: 241 HSFLYG 246
F+
Sbjct: 238 VLFIDS 243
>gi|126176174|ref|YP_001052323.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155]
gi|125999379|gb|ABN63454.1| flagellar biosynthetic protein FliR [Shewanella baltica OS155]
Length = 259
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 109/240 (45%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ SL+ CR+ M++P L SY+P VR+ A++ + ++ P L + +
Sbjct: 12 LIGSLWWPFCRIMGAFMIMPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVDALSLGS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + +L +G + L + + + G+++S +GL + ++ L+
Sbjct: 72 LF--LAVEQLLIGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTNPILSEW 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I G L +D H +V S+ PIG + + ++ + F L L+
Sbjct: 130 LQIFGTLIFLALDGHLVGLNIIVDSFRLWPIGNGIFDLPLM-GLISRMGWLFAASLMLAI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ NI+ G+L++ P + I+ + P + +G + + LS+ I ++S L
Sbjct: 189 PAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRYSDLCLDAL 248
>gi|54297700|ref|YP_124069.1| flagellar biosynthetic protein fliR [Legionella pneumophila str.
Paris]
gi|53751485|emb|CAH12903.1| Flagellar biosynthetic protein fliR [Legionella pneumophila str.
Paris]
Length = 256
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 110/239 (46%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+M + R+G ++ +P LS + +P ++++ F S V ++ + +NF
Sbjct: 11 LMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENF--NG 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y ++ EL LG + G ++++ G +IS GL + + + + ++ L
Sbjct: 69 LYLVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L ++ H + L++S+ +PIG+ +I S + F + +S
Sbjct: 129 YLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIVWSTIMFSGWMFKEAVLISI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ ++S G++ ++ PQ+ ++ + P + +G + + + + + + S +G
Sbjct: 189 PAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEMVESIKHG 247
>gi|220903477|ref|YP_002478789.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867776|gb|ACL48111.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 263
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 1/239 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ ++SL L + RV + +LP S + IP+QV+ + F++ + P L +
Sbjct: 8 QAEVLSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAVTLVFTLGVWPHL-ALPGSSMPAH 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+V+ E LG V G+ + +G+Q G ++ +G +
Sbjct: 67 PFDLVLMVLGEAVLGLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGNQTGITA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ LL +D H + S+ +P G NI +++ F++ L++
Sbjct: 127 FFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPGALFIGSNILWQILHLAAQMFVLALQI 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++P + + +++GL+ + PQI I P IG+G F+ L + I+ L
Sbjct: 187 AAPVMVALFMVEVALGLVARTSPQIHIMEFGFPAKIGVGFFFVGLLLVIMADHVETFIL 245
>gi|77457778|ref|YP_347283.1| flagellar biosynthesis protein FliR [Pseudomonas fluorescens Pf0-1]
gi|77381781|gb|ABA73294.1| flagellar biosynthetic protein FliR [Pseudomonas fluorescens Pf0-1]
Length = 261
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 106/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + L + RV S +M++P + +P ++RL FA A ++V+ P L +
Sbjct: 13 STWVATFMLPLFRVASMLMVMPVFGTTLVPRRIRLYFAFAITVVITPNLPPMPAVSPLDL 72
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ ++ +G V G ++++ G +++ +G+ + + ++ ++ +
Sbjct: 73 SG--LLLIAEQILVGAVLGFSLQLFFQAFVVAGQIVAIQMGMGFASMIDPTNGVSVAVIG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
++ L ++ H VF L +S+ T+P+G L + + L L L
Sbjct: 131 QFFTMLVTLLFLSMNGHLVVFEVLTESFTTLPVGGGLMTTHYWE-LAGKLGWVLGAALLL 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + +V NI+ G++ + PQ+ I+ I P + LG + + + I+ Q+
Sbjct: 190 VLPAVTALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGLFIVWVGLADILNQYQPLATE 249
Query: 246 GF 247
Sbjct: 250 AL 251
>gi|78224287|ref|YP_386034.1| flagellar biosynthesis protein FliR [Geobacter metallireducens
GS-15]
gi|78195542|gb|ABB33309.1| Flagellar biosynthesis protein FliR [Geobacter metallireducens
GS-15]
Length = 264
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 111/235 (47%), Gaps = 1/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L++ R+ +P +PM +++ A ++V P + I Q +
Sbjct: 14 VAFFALVLGRMAGIFAAIPLFGGRRVPMNIKVLAIFALTVVCFPLIKAKIP-QLPADMLS 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L++ E +G GLL + ++F G + +GL++ + + S + ++
Sbjct: 73 LGMLMIREALVGTCLGLLSLIIFAAVEFCGQICGIQMGLSIVSEIDPSRGSQLSIISIFQ 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L ++ HH ALV+SY +P+G + + V + F++ ++LS+P
Sbjct: 133 EMFATLLFLSLNVHHVFINALVESYAVLPVGAWTMSEGLLNFLVVTIGQVFILAIKLSAP 192
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ ++ ++ +G++ + PQ+ ++F+S P IG+G + L LS+ + ++ SF
Sbjct: 193 IMVTLLLTSVMLGIMARAFPQMNVFFVSMPLNIGIGFIILGLSLTVFLHTLRGSF 247
>gi|226941265|ref|YP_002796339.1| FliR1 [Laribacter hongkongensis HLHK9]
gi|226716192|gb|ACO75330.1| FliR1 [Laribacter hongkongensis HLHK9]
Length = 264
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + + RV ++ P +P +V++ A+A +++L+P L +
Sbjct: 12 LLSTYLWPLFRVMGFLLADPLFGTKAVPRRVKVVLAIALTLLLVPLLPPMPAVPVVSGEG 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +L +G G +R+ ++ G++I +GL L+ L
Sbjct: 72 VFI--IVQQLLIGVAMGFAMRLVITAVELAGAMIGMQMGLGFAMQFDPMMGAQVPSLSRL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + L L + H + + +S+ PI + + L LS
Sbjct: 130 LTLSTYLVLLSFNGHLIMLGTVAESFTLFPISLDPLPAAGLQLVAAWGGKMLALALWLSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ N++IG++ + PQ I+ P + +G + L ++ + +L GF
Sbjct: 190 PVVVALLITNLAIGVMTRAAPQFNIFSFGFPLTLLIGFVVLYYALPFMGQALQQLYLQGF 249
>gi|294339802|emb|CAZ88165.1| Flagellar biosynthetic protein FliR [Thiomonas sp. 3As]
Length = 264
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 105/248 (42%), Gaps = 4/248 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+I E + + F RV + + L P SM +P VR+ A+ ++ + P L +Q
Sbjct: 6 SIQIETWIGAFFWPFVRVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPAMPPVQ 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
A+ L L +G GL + + + F GSVI +G+ T +
Sbjct: 66 FGTATAWMLLLQQ--LLVGGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQGVQV 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM--LQTTF 179
T L S + ++ +L ++ H + + +S+ +P+ L + F
Sbjct: 124 TSLASFLNMVTMLLFLAVNGHLILLAVIARSFTLLPVAPNLGLAAQTWFTLAQQGGSAIF 183
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ L L++P + ++ N+ +G+L KL PQ+ ++ + P +G L L L + ++
Sbjct: 184 SLGLALAAPVIGVLLIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQNVV 243
Query: 240 SHSFLYGF 247
H G
Sbjct: 244 QHLVDVGL 251
>gi|118133499|gb|ABK60543.1| flagellar biosynthetic protein FlhB [Clostridium novyi NT]
Length = 575
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 92/207 (44%), Gaps = 1/207 (0%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98
++ F + +++ + + + + + ++E+ G + G + + +++ G
Sbjct: 2 KVMFGVILGFMIITGIDYSY-VNDINSNLMIIMYAIIEISTGVILGFITNICFSCIRYAG 60
Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158
+ + +G + + + + T + ++ L+ ++D + + LV+S+ + I
Sbjct: 61 AFMDLQVGFAMMSMFDPNANSNTTLIERMLYWFSLIVFIIVDGPNMLIKILVESFKVVHI 120
Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218
GQ + +N+ F + +R++ P + I+ ++++GL+ K VPQ+ + + P
Sbjct: 121 GQFILNQQSAMHVINVFIKYFQLGIRIAIPIVLIIILTDLTMGLVAKSVPQLNVMILGMP 180
Query: 219 YLIGLGSLFLCLSIEIIVYQFSHSFLY 245
I LG L L + +I +F
Sbjct: 181 VKIVLGLGVLSLCLPVIFNIIGSAFDN 207
>gi|299531249|ref|ZP_07044659.1| flagellar biosynthetic protein FliR [Comamonas testosteroni S44]
gi|298720656|gb|EFI61603.1| flagellar biosynthetic protein FliR [Comamonas testosteroni S44]
Length = 254
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L RV + P S IPM++++ A ++ P L + + +
Sbjct: 11 AWLSPLIWPFVRVLALFTTAPVFSQKAIPMRLKVGLAFLVALCAQPVLGEQTVVSIASAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A ++ ++ +G G +R+ ++ G VI +GLN + + + + +
Sbjct: 71 A--LGTLVQQVVIGLSVGFAVRLVMAAIEVAGEVIGLQMGLNFASFFDPTSNAQLSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L VI+ H V A++KS+ P+ M F ++
Sbjct: 129 FMVQIATLLFIVINGHLLVLMAVLKSFEAFPVDGNFLQAISQMRIHEMGSAVFASAFWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+ +G+++++ PQ+ IY + P + +G L L ++ ++ G
Sbjct: 189 LPMIAMLLFVNLVLGIISRVAPQMNIYAVGFPVTLTVGLLGLTATLPLLEQPLVALLQKG 248
>gi|238758101|ref|ZP_04619281.1| Flagellar biosynthetic protein fliR [Yersinia aldovae ATCC 35236]
gi|238703639|gb|EEP96176.1| Flagellar biosynthetic protein fliR [Yersinia aldovae ATCC 35236]
Length = 260
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
++ F + RV + I P L+ I +V++ + + ++ P L + +
Sbjct: 10 SALVSQYFWPLIRVLALISTAPILNEKQINRKVKIGLGVLITFLIAPSLP---PVNIPIA 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 67 SIGAIWVAGQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ +L D H + L S+ TIPI E GN F + + FM L L
Sbjct: 127 RLLNLLAMLLFLSFDGHLWLISLLADSFHTIPIQLEPLNGNGFLALTQVGSLIFMSGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + + L + ++ H F
Sbjct: 187 ALPMITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTIGIISMGLMMPLLAPFAEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 IF 248
>gi|194365645|ref|YP_002028255.1| flagellar biosynthetic protein FliR [Stenotrophomonas maltophilia
R551-3]
gi|194348449|gb|ACF51572.1| flagellar biosynthetic protein FliR [Stenotrophomonas maltophilia
R551-3]
Length = 263
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 90/242 (37%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R+G+ M +P + +P +VR+ A +I L P L D F
Sbjct: 16 GMIGTVLWTMLRIGAVAMAMPMVGTRAVPARVRVVLAGTLAIALAPLLPPVPDWTGFD-- 73
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G L+R+ G +I+ GL +
Sbjct: 74 AATVLTIARELAIGVSIGFLLRLVFEAGAMAGELIAQGTGLAFAQMSDPLRGGTSGVIGQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
++ L + + H + +V SY +PIG L + F S L T L L
Sbjct: 134 WFYLLFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + N++ G+L + P + + P + LG L L + F
Sbjct: 194 AIPLTVAMLAVNLAFGVLARAAPALNPIQLGLPVSLLLGLFLLALLAGEMGPPVQRLFDA 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|54294674|ref|YP_127089.1| flagellar biosynthetic protein fliR [Legionella pneumophila str.
Lens]
gi|53754506|emb|CAH15990.1| Flagellar biosynthetic protein fliR [Legionella pneumophila str.
Lens]
Length = 256
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 110/239 (46%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+M + R+G ++ +P LS + +P ++++ F S V ++ + +NF
Sbjct: 11 LMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENF--NG 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y ++ EL LG + G ++++ G +IS GL + + + + ++ L
Sbjct: 69 LYLVYLIQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L ++ H + L++S+ +PIG+ +I S + F + +S
Sbjct: 129 YLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSIIWSTIMFSGWMFKEAVLISI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ ++S G++ ++ PQ+ ++ + P + +G + + + + + + S +G
Sbjct: 189 PAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEMVESIKHG 247
>gi|294500922|ref|YP_003564622.1| flagellar biosynthetic protein FliR [Bacillus megaterium QM B1551]
gi|294350859|gb|ADE71188.1| flagellar biosynthetic protein FliR [Bacillus megaterium QM B1551]
Length = 258
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 103/239 (43%), Gaps = 7/239 (2%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
+ L++ RV S + +P S IP ++ + + S+++ TIDL A +
Sbjct: 10 AFLLVLVRVTSFFITVPLFSYKTIPAVHKVGLSASLSVIIA----TTIDLPVVSLDAQFV 65
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
LV+ E +G GL V+ + +Q G +I IG + + L + +
Sbjct: 66 LLVVKECAVGLFIGLTAYVFIMAIQIAGGLIDFQIGFAIANVIDPQTGAQSPILGQYLYV 125
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSS 187
LL L + HH + + SY IP+ + + + + + F++ +++S
Sbjct: 126 FALLFLLSTNGHHLLIDGIYNSYLIIPLDKTAFPVGSQAFATHIITVFSSMFLVAVQMSL 185
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + +I++G++ + VPQ+ I+ + P I + + L + + + Y F
Sbjct: 186 PLVGSLFLVDIALGIVARTVPQLNIFVVGFPVKIIVAFILLIVVMGSMFYMMQIIFEQM 244
>gi|294668047|ref|ZP_06733172.1| flagellar biosynthesis pathway component FliR [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292601886|gb|EFF45708.1| flagellar biosynthesis pathway component FliR [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 263
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A ++VL P L + F +
Sbjct: 16 AMVGAIMWTMLRTGALLTAMPLIGTRTVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQ 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G ++++ G ++S + GL+ + +
Sbjct: 76 A--VLSIARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
+ L + + H V LV SY +PIG L F+ + L L
Sbjct: 134 WFYLGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLAL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 194 ALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|84624129|ref|YP_451501.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188576797|ref|YP_001913726.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576989|ref|YP_001913918.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84368069|dbj|BAE69227.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188521249|gb|ACD59194.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521441|gb|ACD59386.1| flagellar biosynthetic protein FliR [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 257
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A ++VL P L + F +
Sbjct: 10 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQ 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G ++++ G ++S + GL+ + +
Sbjct: 70 A--VLSIARELAIGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG L F+ + L L
Sbjct: 128 WFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L+K P + + P + LG L F
Sbjct: 188 ALPMMVAMLAVNLAFGALSKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 247
Query: 246 GF 247
F
Sbjct: 248 AF 249
>gi|325273554|ref|ZP_08139784.1| flagellar biosynthesis protein FliR [Pseudomonas sp. TJI-51]
gi|324101314|gb|EGB98930.1| flagellar biosynthesis protein FliR [Pseudomonas sp. TJI-51]
Length = 258
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 106/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + RV + +M +P +P +VRL A+A ++V++P L + R
Sbjct: 11 TWVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLR 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G + GL +++ G +++ +G+ + + + + T ++
Sbjct: 71 G--LLLCAEQIIVGTLFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPGNGVNVTVISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + +++ H VF L +S+ T+P+G L N F + F L L
Sbjct: 129 FMTMLVSVLFLLMNGHLVVFEVLTESFSTLPVGNALVV-NHFWELAGRMGWVFGAGLLLI 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V NI+ G++ + PQ+ I+ I P + +G + + ++ +
Sbjct: 188 LPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSHYQALASET 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|78355425|ref|YP_386874.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78217830|gb|ABB37179.1| flagellar biosynthetic protein FliR [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 261
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 1/239 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E +S L + R+ + LLP + P V+ M ++ L P L + L +
Sbjct: 8 EASFLSFLLTLMRISLVVFLLPVFGGNSAPRLVKGALCMVLTLALWPHLSFSGSL-LPGH 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ E+ +G + GLL+R + G+Q G ++ +G + + + + +
Sbjct: 67 PFGIALMLAGEIIMGIMLGLLVRFFFAGIQTGGELLGFQMGFTMVSVADPLSGQSTSISS 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ LL V+D H + L S+ +P GQ + + + + F++ + +
Sbjct: 127 HFMYMVSLLIFLVLDGHLVMLKGLTDSFALVPPGQLVFRHASLHNMLTLAGGMFVMAVHI 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++P + + +++ L+ + PQ+ + I P IG+G LF+ L I+ +Q L
Sbjct: 187 AAPVMAALFLVELALALMGRAAPQMNLLMIGFPLKIGVGFLFMGLLFTIMRHQVQDFIL 245
>gi|255263738|ref|ZP_05343080.1| flagellar biosynthetic protein FliR [Thalassiobium sp. R2A62]
gi|255106073|gb|EET48747.1| flagellar biosynthetic protein FliR [Thalassiobium sp. R2A62]
Length = 260
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/238 (22%), Positives = 120/238 (50%), Gaps = 3/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +I RVG+ + +LPGL +P +VRL A+A ++++ P + + V+
Sbjct: 15 WLFGAAVIFLRVGAMMAVLPGLGERSVPARVRLGLAIALTVLVTPLIAPDLPEPEEVSN- 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L+++E +G + G+ +R++ L G++ + + L+ G + + A+ + +
Sbjct: 74 -LVGLLLIEASIGLLLGMSLRLFVFTLSTAGAIAAQSTSLSQIFG-GSAGAEAQPAIGHV 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ GL + + H +V +V SYG+ P G L+ + V+ + +F L++
Sbjct: 132 LVTGGLTIAMITELHLRVVEFIVMSYGSFPTGVPLSATFVADFGVSRVAASFAFAFTLAA 191
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
PF +++N+++G++N+ +PQ+ + F+ P + G + L LS ++ + +F
Sbjct: 192 PFFIASLIYNVTLGVINRAMPQLMVSFVGAPVITAGGLVLLALSAPTLLGLWIDAFHD 249
>gi|146296298|ref|YP_001180069.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409874|gb|ABP66878.1| flagellar biosynthetic protein FliR [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 260
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 99/233 (42%), Gaps = 2/233 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL++ R+ + P IP ++ A SI+++ L + N +
Sbjct: 15 FFLVLARMSGIFIASPIFGRRNIPAYFKIGLAFFLSIIVV--LLYHFEYTVPQNLLEFIF 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V E +G + G + + + G +I AIG + + + L + + +
Sbjct: 73 VVTKEFIVGIIIGFISYMIFSTILLAGQIIDNAIGFGIANVIDPMSEIQVPLLGNFLYLY 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L+ + D HH + A+V SY +P+G + F+ F+I + +S P L
Sbjct: 133 MLVIFFATDAHHTLIRAVVYSYKVVPLGYSNILPKLSQKFITFFIELFVIGIEISLPILM 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ +I +G+L++ VPQ+ ++ + P I +G + L + + I+
Sbjct: 193 SMLIVDIILGILSRAVPQMNVFMVGIPIKIAIGFVVLVIVLPIMNKMIFVLLD 245
>gi|315179474|gb|ADT86388.1| flagellar biosynthesis protein [Vibrio furnissii NCTC 11218]
Length = 260
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 95/240 (39%), Gaps = 1/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F R+ + +M++ ++ ++RL +A + ++P + ++
Sbjct: 10 EFIANYFWPYARISAMLMVMTVTGARFVSTRIRLYLGLAITFAVMPAIPAVPPDLELLSF 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G G++ + G ++ L + + ++ L
Sbjct: 70 NGFLTT-LNQIIIGVAMGMVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L + L V D H ++ + +V S+ ++PIG F L T F + L +S
Sbjct: 129 LFMFLATLFFLVSDGHLKMIHLVVLSFKSLPIGTHSLTAVDFRELALWLGTMFKVALSMS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 189 LSGIVALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLCWYILSGLFSHYELFWAEG 248
>gi|295399826|ref|ZP_06809807.1| flagellar biosynthetic protein FliR [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111662|ref|YP_003989978.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y4.1MC1]
gi|294978229|gb|EFG53826.1| flagellar biosynthetic protein FliR [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216763|gb|ADP75367.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y4.1MC1]
Length = 257
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 6/241 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
LI RV S LP S IPM ++ + S ++ +
Sbjct: 8 FPVFLLIFARVASFFATLPLFSYRTIPMAHKIGLSFFLSWMMFFAISK----PTVALDEM 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LV+ E+ +G GL + +Q G +I +G + + +
Sbjct: 64 YVLLVVKEVLVGLCIGLFAFMIISAIQIVGGLIDFQMGFAIANVIDPQTGAQNPLMGQYF 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFMIMLRLS 186
+ LL L ++ HH + + SY IP+ + G++ V F I ++S
Sbjct: 124 YMFALLLLLSVNGHHLLLDGVFYSYRFIPLDHWPRLDHGHVAEYIVKSFSAMFAIAFQMS 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + ++++G++ + VPQ+ I+ + P I +G + L +++ I H F
Sbjct: 184 VPLVGCLFLVDVALGIVARTVPQLNIFVVGFPVKIAVGFILLIVTMAAIFLAVRHLFDTM 243
Query: 247 F 247
F
Sbjct: 244 F 244
>gi|148546752|ref|YP_001266854.1| flagellar biosynthesis protein FliR [Pseudomonas putida F1]
gi|148510810|gb|ABQ77670.1| flagellar biosynthetic protein FliR [Pseudomonas putida F1]
Length = 258
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + RV + +M +P +P +VRL A+A ++V++P L + R
Sbjct: 11 TWVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLR 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G + GL +++ G +++ +G+ + + ++ + T ++
Sbjct: 71 G--LLLCAEQIIVGALFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPANGVNVTVISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + +++ H VF L +S+ T+P+G L N F + F L L
Sbjct: 129 FMTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLI 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V NI+ G++ + PQ+ I+ I P + +G + + I+ +
Sbjct: 188 LPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMAIFWIGLADILSHYQALASEA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|300311363|ref|YP_003775455.1| flagellar biosynthesis protein FliR [Herbaspirillum seropedicae
SmR1]
gi|300074148|gb|ADJ63547.1| FliR component of the flagellar biosynthesis pathway
[Herbaspirillum seropedicae SmR1]
Length = 267
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 93/240 (38%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + +PM V++ +A V+ P + ++
Sbjct: 11 VWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPIPPAIEPTSMT 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + + L G +R+ ++ G ST +GL+ ++
Sbjct: 71 GIMILLQQLLIGL--SMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQGRTAVISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + ++ H + + +S+ T+PI + F V F + L+LS
Sbjct: 129 VFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKIFSMGLQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ N ++G+L + PQ+ ++ I + G + + +++ ++ G
Sbjct: 189 LPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTPVQKLLSDG 248
>gi|295706268|ref|YP_003599343.1| flagellar biosynthetic protein FliR [Bacillus megaterium DSM 319]
gi|294803927|gb|ADF40993.1| flagellar biosynthetic protein FliR [Bacillus megaterium DSM 319]
Length = 258
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 103/239 (43%), Gaps = 7/239 (2%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
+ L++ RV S + +P S IP ++ + + S+++ TIDL A +
Sbjct: 10 AFLLVLVRVTSFFITVPLFSYKTIPAVHKVGLSASLSVIIA----TTIDLPVVSLDAQFL 65
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
LV+ E +G GL V+ + +Q G +I +G + + L + +
Sbjct: 66 LLVVKECAVGLFIGLTAYVFIMAIQIAGGLIDFQVGFAIANVIDPQTGAQSPILGQYLYV 125
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRLSS 187
LL L + HH + + SY IP+ + + + + + F++ +++S
Sbjct: 126 FALLFLLSTNGHHLLIDGIYNSYLIIPLDKVAFPVGSQAFATHIITVFSSMFLVAVQMSL 185
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + +I++G++ + VPQ+ I+ + P I + + L + + + Y F
Sbjct: 186 PLVGSLFLVDIALGIVARTVPQLNIFVVGFPVKIIVAFILLIVVMGSMFYMMQIIFEQM 244
>gi|264676606|ref|YP_003276512.1| flagellar biosynthetic protein FliR [Comamonas testosteroni CNB-2]
gi|262207118|gb|ACY31216.1| flagellar biosynthetic protein FliR [Comamonas testosteroni CNB-2]
Length = 254
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L RV + P S IPM++++ A ++ P L + + +
Sbjct: 11 AWLSPLIWPFVRVLALFTTAPVFSQKAIPMRLKVGLAFLVALCAQPVLGEQTVVSIASAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A ++ ++ +G G +R+ ++ G V+ +GLN + + + + +
Sbjct: 71 A--LGTLVQQVVIGLSVGFAVRLVMAAIEVAGEVVGLQMGLNFASFFDPTSNAQLSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L VI+ H V A++KS+ P+ M F ++
Sbjct: 129 FMVQIATLLFIVINGHLLVLMAVLKSFEAFPVDGNFLQAISQMRIHEMGSAVFASAFWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+ +G+++++ PQ+ IY + P + +G L L ++ ++ G
Sbjct: 189 LPMIAMLLFVNLVLGIISRVAPQMNIYAVGFPVTLTVGLLGLTATLPLLEQPLVALLQKG 248
>gi|21231362|ref|NP_637279.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768585|ref|YP_243347.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991604|ref|YP_001903614.1| hypothetical protein xccb100_2210 [Xanthomonas campestris pv.
campestris str. B100]
gi|21113024|gb|AAM41203.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573917|gb|AAY49327.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167733364|emb|CAP51565.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 263
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ ++ L P L + F
Sbjct: 16 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLTGTLAMALAPILPPVPEWDGFNAT 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G ++R+ G ++S A GL+ + +
Sbjct: 76 A--VLSIARELAVGASMGFMLRLIFEAGALAGELVSQATGLSFAQMSDPLRGVTSGVIAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG + F+ +L L L
Sbjct: 134 WFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTAVPDAAAFAEVAPTLLLQVLRGGLTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 194 ALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRLFDS 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|197285501|ref|YP_002151373.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
gi|227355992|ref|ZP_03840384.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
gi|194682988|emb|CAR43426.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
gi|227163980|gb|EEI48882.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
Length = 260
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F R+ + P S P + R+ A + ++ P L + Q +
Sbjct: 11 GYISDFFWPFVRILALFSTAPLFSEKQTPKKFRIGLAFLTTALIAPGLPQS---QVPLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+++ ++ +G + GL +++ ++ G VI +GL+ T + S L
Sbjct: 68 IMAFWVLIQQILIGTILGLSMQLAFASVRHAGEVIGLQMGLSFATFVDPSGGPNMPILAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L V D H + L ++ +PIG + + V T F+ + L+
Sbjct: 128 IFNMLTMLLFMVFDGHLWLLSVLADTFYVVPIGNQTFNSLGILTLVQSGGTIFINGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N+S+G+LN++ PQ+ ++ + P + +G L L L + + F
Sbjct: 188 MPLITLLLVLNLSLGILNRMTPQLSVFVVGFPLTLTIGMLALSLIMPALPVFTERVFSDT 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|296135633|ref|YP_003642875.1| flagellar biosynthetic protein FliR [Thiomonas intermedia K12]
gi|295795755|gb|ADG30545.1| flagellar biosynthetic protein FliR [Thiomonas intermedia K12]
Length = 266
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 4/248 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ E + + F RV + + L P SM +P VR+ A+ ++ + P L +Q
Sbjct: 6 STQIETWIGAFFWPFLRVLAMLSLAPVFSMGSLPTMVRVGLAVLIAVAIAPALPAMPPVQ 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
A+ L L +G GL + + + F GSVI +G+ T +
Sbjct: 66 FGTATAWMLLLQQ--LLVGGAIGLSMTLILSAVMFAGSVIGLQMGMGFATLFDPVQGVQV 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM--LQTTF 179
T L S + ++ +L ++ H + + +S+ +P+ L + F
Sbjct: 124 TSLASFLNMVTMLLFLAVNGHLILLAVIARSFTLLPVAPNLGLAAQTWFTLAQQGGSAIF 183
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ L L++P + ++ N+ +G+L KL PQ+ ++ + P +G L L L + ++
Sbjct: 184 SLGLALAAPVIGVLLIANLGLGVLTKLAPQLNLFAVGFPMFFIMGFLALYLVMPVMQNVV 243
Query: 240 SHSFLYGF 247
H G
Sbjct: 244 QHLVDVGL 251
>gi|229528867|ref|ZP_04418257.1| flagellar biosynthesis protein FliR [Vibrio cholerae 12129(1)]
gi|229332641|gb|EEN98127.1| flagellar biosynthesis protein FliR [Vibrio cholerae 12129(1)]
Length = 260
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 93/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++P +VRL +A + ++P + ++
Sbjct: 11 FIANYFWPYMRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L V D H ++ +V S+ ++PIG F L F L +S
Sbjct: 130 FMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + +
Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEA 248
>gi|238788322|ref|ZP_04632116.1| Flagellar biosynthetic protein fliR [Yersinia frederiksenii ATCC
33641]
gi|238723568|gb|EEQ15214.1| Flagellar biosynthetic protein fliR [Yersinia frederiksenii ATCC
33641]
Length = 260
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
I + F + RV + I P LS I +V++ A+ + ++ P L + +
Sbjct: 10 SIWVSQYFWPLVRVLALITTAPVLSEKQINRKVKVGLAVLITFLIAPSLP---PVNIPLV 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A + ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 67 SAGAVWVAAQQVLIGVAIGLTMQFAFAAVRLAGEVIGLQMGLSFATFFDPSGGPNMPVLA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ +L D H + L S+ T+PI E GN F + FM L L
Sbjct: 127 RLLNLLAMLLFLAFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMNGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + L L + ++ H F
Sbjct: 187 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISLGLIMPLLAPFSEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 FF 248
>gi|167034910|ref|YP_001670141.1| flagellar biosynthesis protein FliR [Pseudomonas putida GB-1]
gi|166861398|gb|ABY99805.1| flagellar biosynthetic protein FliR [Pseudomonas putida GB-1]
Length = 258
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + RV + +M +P +P +VRL A+A ++V++P L + R
Sbjct: 11 TWVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLR 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G + GL +++ G +++ +G+ + + ++ + T ++
Sbjct: 71 G--LLLCAEQIIVGALFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPANGVNVTVISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + +++ H VF L +S+ T+P+G L N F + F L L
Sbjct: 129 FMTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFAAGLLLI 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V NI+ G++ + PQ+ I+ I P + LG + + ++ +
Sbjct: 188 LPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMFIFWVGLADVLSHYQALASET 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|238794005|ref|ZP_04637623.1| Flagellar biosynthetic protein fliR [Yersinia intermedia ATCC
29909]
gi|238726637|gb|EEQ18173.1| Flagellar biosynthetic protein fliR [Yersinia intermedia ATCC
29909]
Length = 260
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + F + RV + I P LS I +V++ A+ + ++ P L + +
Sbjct: 10 SVWVSQYFWPLIRVLALITTAPVLSEKQINRKVKVGLALLITFLIAPSLP---PVNIPLV 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 67 STGAVWVAAQQVLIGVAIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNMPVLA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ ++ LL D H + L S+ T+PI E GN F + FM L L
Sbjct: 127 RLLNLLALLLFLTFDGHLWLISLLADSFHTLPIQFEPLNGNGFLALTQAGSLIFMNGLML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+++G+LN++ PQ+ ++ I P + +G + + L + ++ H F
Sbjct: 187 ALPLITLLLTLNMALGMLNRMTPQLSVFVIGFPLTLTVGIISIGLIMPLLPPFAEHLFGE 246
Query: 246 GF 247
F
Sbjct: 247 VF 248
>gi|152987229|ref|YP_001349233.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PA7]
gi|150962387|gb|ABR84412.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa PA7]
Length = 258
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S L + RV + +M +P + +P++VRL A+ +VL+P L + +
Sbjct: 11 GWIASFVLPLFRVAALLMTMPVIGTQLVPVRVRLYLALGICVVLVPNLPPMPQVDALSVK 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G + G +++ G +IS +GL + + ++ ++ L
Sbjct: 71 SML--LIGEQILVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANGVSVPVLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L ++ H VF + +S+ T+P+G+ L GN F L L L+
Sbjct: 129 FFTMLVTLLFLAMNGHLVVFEVIAESFVTLPVGEGL-SGNHFWVIAGKLGWVMGAALLLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ G + + PQ+ I+ I P + LG L + ++ Q+
Sbjct: 188 LPAITALLVVNLAFGAMTRAAPQLNIFSIGFPLTLVLGLGILWIGTADLLGQYQVLAGEA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|221069286|ref|ZP_03545391.1| flagellar biosynthetic protein FliR [Comamonas testosteroni KF-1]
gi|220714309|gb|EED69677.1| flagellar biosynthetic protein FliR [Comamonas testosteroni KF-1]
Length = 254
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L RV + P S IPM++++ A ++ P L + + +
Sbjct: 11 AWLSPLIWPFVRVLALFTAAPVFSQKAIPMRLKVGLAFLVALCAQPVLGEQTVVSIASAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A ++ ++ +G G +R+ ++ G V+ +GLN + + + + +
Sbjct: 71 A--LGTLVQQVVVGLSVGFAVRLVMAAIEVAGEVVGLQMGLNFASFFDPTSNAQLSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I L VI+ H V A++KS+ P+ M F ++
Sbjct: 129 FLVQIATLLFIVINGHLLVLMAVLKSFQAFPVDGNFLQAISQMRIHEMGSAIFSSAFWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+ +G+++++ PQ+ IY + P + +G L L ++ ++ G
Sbjct: 189 LPMIAMLLFVNLVLGIISRVAPQMNIYAVGFPVTLTVGLLGLTATLPLLEQPLVALLQKG 248
>gi|187926925|ref|YP_001893270.1| flagellar biosynthetic protein FliR [Ralstonia pickettii 12J]
gi|241665254|ref|YP_002983613.1| flagellar biosynthetic protein FliR [Ralstonia pickettii 12D]
gi|187728679|gb|ACD29843.1| flagellar biosynthetic protein FliR [Ralstonia pickettii 12J]
gi|240867281|gb|ACS64941.1| flagellar biosynthetic protein FliR [Ralstonia pickettii 12D]
Length = 262
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 33/241 (13%), Positives = 93/241 (38%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV + I + P + + +P +++ + ++ L P L + +
Sbjct: 11 GWIAMYWWPLVRVLAFIAMAPPFANTEVPTSIKIALGVIITVALAPMLPVPVGVSVGSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ + +G G +++ + G V+S +GL + + + + L
Sbjct: 71 GLWITLL--QAVIGLSLGFCVQLVFSAISGAGEVMSVQMGLGFASLLDPQQTESSMLLGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I + + A D H + +AL S+ +P+ + + F + +R++
Sbjct: 129 FISLTAITAFIAGDGHLVLLHALFDSFTALPVSAAPLANPGWQTLAGGGTMVFALAVRIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N+ +L++ + + + + +G + + + + + S +
Sbjct: 189 LPIIAIMLVVNLGFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|78777992|ref|YP_394307.1| flagellar biosynthesis protein FliR [Sulfurimonas denitrificans DSM
1251]
gi|78498532|gb|ABB45072.1| Flagellar biosynthesis protein FliR [Sulfurimonas denitrificans DSM
1251]
Length = 254
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 106/243 (43%), Gaps = 3/243 (1%)
Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ ++ L+ R + + +P S + IP+ ++ A F+IV + L +
Sbjct: 8 SDTYIVGFILLFFRFAALFIAVPIFSHNNIPISIKTSLAFFFTIVFYSSMP---PLTMVI 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
++ EL G G+++++ + F G IS +G ++ +++ ++ +
Sbjct: 65 TVPSIVMAILSELLFGLAIGVILQIAFNAITFAGGQISFMMGFSMASAIDPQSGISMPII 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
+ + ++ L+ L+ ID HH + + S IP+G + N+F+ + + F++
Sbjct: 125 SQFLSLMALMMLFAIDMHHWILLFIDSSLQNIPLGGFVMSENLFTYIIKAMSNMFLVGFM 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ P ++ +I G+L K +PQ + I P I + L +I I+ +
Sbjct: 185 IAFPITALGLLADIIFGMLMKTMPQFNLLVIGFPIKIMVSFAVLIATISAIMLIIKGQMV 244
Query: 245 YGF 247
F
Sbjct: 245 EAF 247
>gi|323496543|ref|ZP_08101597.1| flagellar biosynthesis protein FliR [Vibrio sinaloensis DSM 21326]
gi|323318387|gb|EGA71344.1| flagellar biosynthesis protein FliR [Vibrio sinaloensis DSM 21326]
Length = 260
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 37/239 (15%), Positives = 94/239 (39%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ +VRL +A + ++P + + ++
Sbjct: 11 WLANYFWPYTRISAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPAIPAVPEDIQLLSFQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G + + G ++ L + + ++ L L
Sbjct: 71 GFMTL-LEQIVIGVAMGTVTQFMIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ ++PIG F L F + L +S
Sbjct: 130 FMFLATMFFLATDGHLKMIMLVVMSFKSLPIGAGSLTTVDFRELALWLGIMFKVALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + +L G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALIVGLLLCWYILGGLYSHYELFWLQG 248
>gi|331671780|ref|ZP_08372576.1| flagellar biosynthetic protein FliR [Escherichia coli TA280]
gi|331070769|gb|EGI42128.1| flagellar biosynthetic protein FliR [Escherichia coli TA280]
Length = 277
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 29 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 88
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 89 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 146
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 147 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 205
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + +G + + + + H
Sbjct: 206 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLLYNLPDHYLHL 260
>gi|153836975|ref|ZP_01989642.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AQ3810]
gi|149749748|gb|EDM60493.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AQ3810]
Length = 260
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M++ ++ ++RL +A + ++P + ++
Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIQLLSFR 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MTIAEQMIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ T+PIG F L F L +S
Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDVAGWLGIMFKTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYILAGLYSHYELYWALG 248
>gi|304412526|ref|ZP_07394132.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183]
gi|307307185|ref|ZP_07586923.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175]
gi|304349168|gb|EFM13580.1| flagellar biosynthetic protein FliR [Shewanella baltica OS183]
gi|306910424|gb|EFN40855.1| flagellar biosynthetic protein FliR [Shewanella baltica BA175]
Length = 259
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 109/240 (45%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ SL+ CR+ M++P L SY+P VR+ A++ + ++ P L + +
Sbjct: 12 LIGSLWWPFCRIMGAFMIIPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVDALSLGS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + +L +G + L + + + G+++S +GL + ++ L+
Sbjct: 72 LF--LAVEQLLIGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTNPILSEW 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I G L +D H +V S+ PIG + + ++ + F L L+
Sbjct: 130 LQIFGTLIFLALDGHLVGLNIIVDSFRLWPIGNGIFDLPLM-GLISRMGWLFAASLMLAI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ NI+ G+L++ P + I+ + P + +G + + LS+ I ++S L
Sbjct: 189 PAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRYSDLCLDAL 248
>gi|323527704|ref|YP_004229857.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1001]
gi|323384706|gb|ADX56797.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1001]
Length = 260
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 109/240 (45%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P L +P++V++ + +I++ P L + F
Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPLRVKIGLSAFVTIIVAPTLGALPQVTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G+ +++ + TG + +GL T S + L+S
Sbjct: 71 GVWI--IVNQFLIGIALGVTMQIVFQAISATGDFVGLGMGLGFATFFDAQASSSSQVLSS 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +L VID H Q+ AL+ S+ ++P+ + + + N T F L LS
Sbjct: 129 YMYTIAMLVFLVIDGHLQMISALLASFNSLPVSANILGSPGWRTLANFGSTIFSAGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P + +G L L L I ++ F+ F G
Sbjct: 189 LPVVAALLITNLALGILNRAAPQIGVFQIGFPLTMLIGLLLLQLMIPNMIPFFARLFAVG 248
>gi|149188097|ref|ZP_01866392.1| flagellar biosynthesis protein R [Vibrio shilonii AK1]
gi|148838085|gb|EDL55027.1| flagellar biosynthesis protein R [Vibrio shilonii AK1]
Length = 260
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/239 (14%), Positives = 90/239 (37%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F R+ + +M++ +++ ++RL +A ++ ++P + +
Sbjct: 10 EWISNYFWPYVRISAMLMVMSVTGANFVSPRIRLFLGLALTLAVMPSIPAVPQTIELFSF 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V ++ +G G+ G ++ L + + ++ L
Sbjct: 70 QGFLT-VAEQILIGTAMGMTTVFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L + + D H ++ +V S+ T+PIG F L F L ++
Sbjct: 129 LFMFLATMFFLATDGHLKMIQLVVMSFKTLPIGSGHLSSADFREMAGWLSIMFQTALSMA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + N+S G++ + PQ+ I+ + + + +G + + + + +L
Sbjct: 189 LAGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLIGLMICWYIMAGLYSHYQLYWLE 247
>gi|206603140|gb|EDZ39620.1| flagellar biosynthesis protein, FliR [Leptospirillum sp. Group II
'5-way CG']
Length = 262
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 102/239 (42%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ ++ RV ++ +P LS +P++++ A+A + ++ P + + +
Sbjct: 10 TLLLYVWVLARVSGLVVSMPVLSGKAVPVRIKALIAVALAFLIEPVVLGNVSPPRLFSA- 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E F+G G + + F G + +G L + L +
Sbjct: 69 -WLGSLVTEFFVGVALGFSSYLVFAAVSFAGELAGVQVGFGLVDVINPLGLAEVPLLGTF 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ L H + +AL +SY +P G+ + ++ + ++ + L++
Sbjct: 128 QNSVAFLVFLASGTHEALIWALGRSYAVVPPGEGRFRTIFYEGYLGVFAHFMVLGITLAA 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
PFL IV N+++G L++++PQ+ + + P L+ G L LS+ + SF
Sbjct: 188 PFLVGGIVLNLAMGFLSRMMPQMNLISVGFPVLVLGGLGLLILSLPFLGSVLEDSFFRM 246
>gi|166712020|ref|ZP_02243227.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 263
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A ++VL P L + F +
Sbjct: 16 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQ 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G ++++ G ++S + GL+ + +
Sbjct: 76 A--VLSIARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG L F+ + L L
Sbjct: 134 WFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTVLPDAGAFAEVAPTLFLQILRGGLTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 194 ALPMMVAMLAVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 253
Query: 246 GF 247
Sbjct: 254 AL 255
>gi|331640692|ref|ZP_08341839.1| flagellar biosynthetic protein FliR [Escherichia coli H736]
gi|331040066|gb|EGI12274.1| flagellar biosynthetic protein FliR [Escherichia coli H736]
Length = 277
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 29 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 88
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 89 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 146
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 147 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 205
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 206 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 260
>gi|254497496|ref|ZP_05110289.1| flagellar biosynthetic protein FliR [Legionella drancourtii LLAP12]
gi|254353311|gb|EET12053.1| flagellar biosynthetic protein FliR [Legionella drancourtii LLAP12]
Length = 256
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 99/239 (41%), Gaps = 2/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + R+G ++ +P S +P +V++ F S V P + + + NF
Sbjct: 11 VISQVMWPFARIGGLLLSVPVFSSVLLPSRVKVIFLFVLSWVCSPLVPEELTFLNF--NG 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y + EL LG + G +++ G +IS G+ + + + + L
Sbjct: 69 AYIVYIAQELLLGLLMGFVLQFTFQVFILGGQIISMQAGMGFAVMVDPASKASVPLVGQL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ L ++ H + L+ S+ +P+G ++ + + F L +S
Sbjct: 129 YLIMMTLIFLALNGHLMIIETLMDSFKKMPVGHSGVTSSMLWHVITISSWMFKKALLISI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L +V ++S G++ + PQ+ I+ + P + +G + + + + + Q G
Sbjct: 189 PALLSLLVVSLSFGVMARAAPQLNIFSLGFPITLLMGIVVIKIGLPSVAAQMVDIIDEG 247
>gi|289670561|ref|ZP_06491636.1| flagellar biosynthetic protein FliR [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 257
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A ++VL P L + F +
Sbjct: 10 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQ 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + EL +G G ++++ G ++S + GL+ + +
Sbjct: 70 S--VLSIARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG L F+ + L L
Sbjct: 128 WFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 188 ALPMMVAMLAVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 247
Query: 246 GF 247
F
Sbjct: 248 AF 249
>gi|146341891|ref|YP_001206939.1| flagellar biosynthesis protein FliR [Bradyrhizobium sp. ORS278]
gi|146194697|emb|CAL78722.1| Flagellar biosynthetic protein fliR [Bradyrhizobium sp. ORS278]
Length = 255
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 1/238 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L R+ + +MLLPGL IP++++L A+ ++++LP +
Sbjct: 10 TLAAVFMLAFARIAAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLNRQAYQVD-LQAL 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +++ E+ +G V G RV LQ GSVI+ +GL T++ + + +
Sbjct: 69 SPLVVMMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQGQQGVLIGN 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++G+ L+ D HH V AL SY G+ + G++ S F I L+LS
Sbjct: 129 FLTMLGVTLLFATDSHHLVIAALSDSYKIFAPGELVPSGDVASLATKAFAAAFKIGLQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+PFL F +VFNI +G+L +L+PQ+ +YF+ P I +G L L + ++ F F
Sbjct: 189 APFLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFALVLTAMMGTFLGYFE 246
>gi|300696943|ref|YP_003747604.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR
family [Ralstonia solanacearum CFBP2957]
gi|299073667|emb|CBJ53187.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR
family [Ralstonia solanacearum CFBP2957]
Length = 262
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV + I + P S + IP +++ F +A ++ L P L +
Sbjct: 11 GWIALYWWPLVRVLAFIAMAPPFSNTEIPTSIKVAFGVALTVALAPMLPVPQGVSVGSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G G +++ + G ++S IGL T + + + L
Sbjct: 71 GLWITLL--QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I + + A D H + +AL S+ +P+ G + + F + +R++
Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAVFALAVRIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N++ +L++ + + + + +G + + + + + S +
Sbjct: 189 LPIIAIMMIVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|317153079|ref|YP_004121127.1| flagellar biosynthetic protein FliR [Desulfovibrio aespoeensis
Aspo-2]
gi|316943330|gb|ADU62381.1| flagellar biosynthetic protein FliR [Desulfovibrio aespoeensis
Aspo-2]
Length = 261
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 102/237 (43%), Gaps = 1/237 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
M+S FL + R+ + L+P + IP V+ + S+ + P L N
Sbjct: 11 MLSFFLTLFRISVVLFLMPFFGGNSIPTLVKGALVLVLSLAVWPQLSF-PGSMLPANGLD 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + + E+ LG + GL + +QF G +I +G + + + +
Sbjct: 70 ITIMFLGEVLLGLILGLTVNFLFGAIQFGGQIIGFQMGFAMVSVVDPISGTTNAVTAHFL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +L V++ H Q+ AL S+ IP G L ++ + F+++ F + +R+++P
Sbjct: 130 YMCTMLTFLVLNGHLQLINALGMSFQYIPPGGLLITPSLATQFLSLSAIMFTLAIRIAAP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + ++++ L+++ PQ+ + + P I +G FL I+
Sbjct: 190 VMAALFLVDLALALISRAAPQMHVLILGFPIKITVGFFFLGFLFTIMSLYVQEFIQD 246
>gi|91223557|ref|ZP_01258822.1| flagellar biosynthesis protein R [Vibrio alginolyticus 12G01]
gi|91191643|gb|EAS77907.1| flagellar biosynthesis protein R [Vibrio alginolyticus 12G01]
Length = 260
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M++ ++ ++RL +A + ++P + ++
Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIELLSFR 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MTIAEQIIIGIAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ T+PIG F L F L +S
Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMAGWLGIMFQTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILAGLYSHYEMFWTVG 248
>gi|254292631|ref|YP_003058654.1| flagellar biosynthetic protein FliR [Hirschia baltica ATCC 49814]
gi|254041162|gb|ACT57957.1| flagellar biosynthetic protein FliR [Hirschia baltica ATCC 49814]
Length = 247
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/230 (25%), Positives = 113/230 (49%), Gaps = 1/230 (0%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
L+ CR+GS +ML PG S +P Q RL A+ ++ L+P L D + + + L+
Sbjct: 9 LLFCRIGSVLMLAPGWGESSVPAQFRLSAALLATMALVPNLIDQMPPVPELVSQS-ALLI 67
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ E+ +G + G R+ LQ G +I + GL + T + + + + + +
Sbjct: 68 ISEILIGIMMGAGARILMSALQVGGQIIGISSGLAMATQFDPTIGSSSAIIGVFMSMTAI 127
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
+ + + H + A V SY G+ L G+ + + + F + L++++P L
Sbjct: 128 VLIMIAGIHRDMLQAAVDSYQLFKPGEPLPIGDAAQWELGAMSSAFKLGLQIAAPILVVA 187
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+VFN+SIGL+ +L+PQ+ ++FI+ P + LG + + + + +
Sbjct: 188 LVFNLSIGLVARLIPQVQVFFIAMPIQVMLGLSIMTFILGGGLLVWLDAL 237
>gi|320354334|ref|YP_004195673.1| flagellar biosynthetic protein FliR [Desulfobulbus propionicus DSM
2032]
gi|320122836|gb|ADW18382.1| flagellar biosynthetic protein FliR [Desulfobulbus propionicus DSM
2032]
Length = 259
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 1/244 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ P L + RV + + +P + S I ++++ A+A S++L P + I
Sbjct: 5 LFPLQQFQEFLLCLARVLALVAAIPAFAGSAISGRIKIGLAVATSLLLFPAMAPHIPKVA 64
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
F + L++ E+ LG + GL+ ++ + F G+VI +G + +
Sbjct: 65 FTLT-EFGLLIVNEVLLGVMIGLVTQMVFAAVSFGGTVIGYQMGFAAANIFDPQTTQQLS 123
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
++ I+ LL +D HH F ALV+SY +P G + + F++
Sbjct: 124 LMSQFANILALLVFLALDMHHFFFRALVESYHLLPPGPLDFSHGAVEELMRLASRMFVLG 183
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++ S+P L ++ N+ +G+L ++ PQ+ ++ +S P IG+ L + L++
Sbjct: 184 VKFSAPVLTLLLLTNLVLGILARVFPQLNVFMLSFPLNIGIAFLVIGLTLGATFSVLRRE 243
Query: 243 FLYG 246
F
Sbjct: 244 FDTM 247
>gi|28899011|ref|NP_798616.1| flagellar biosynthesis protein FliR [Vibrio parahaemolyticus RIMD
2210633]
gi|260365243|ref|ZP_05777800.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030]
gi|260878793|ref|ZP_05891148.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AN-5034]
gi|260897388|ref|ZP_05905884.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
Peru-466]
gi|260899947|ref|ZP_05908342.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AQ4037]
gi|4322009|gb|AAD15912.1| polar flagellar assembly protein FliR [Vibrio parahaemolyticus]
gi|28807230|dbj|BAC60500.1| polar flagellar assembly protein FliR [Vibrio parahaemolyticus RIMD
2210633]
gi|308088233|gb|EFO37928.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
Peru-466]
gi|308094303|gb|EFO43998.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AN-5034]
gi|308107282|gb|EFO44822.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AQ4037]
gi|308115400|gb|EFO52940.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030]
Length = 260
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M++ ++ ++RL +A + ++P + ++
Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIQLLSFR 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MTIAEQMIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ T+PIG F L F L +S
Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDMAGWLGIMFKTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYILAGLYSHYELYWALG 248
>gi|260767694|ref|ZP_05876629.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972]
gi|260617203|gb|EEX42387.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972]
Length = 260
Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 95/240 (39%), Gaps = 1/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F R+ + +M++ ++ ++RL +A + ++P + ++
Sbjct: 10 EFIANYFWPYARISAMLMVMTVTGARFVSTRIRLYLGLAITFAVMPAIPAVPSDLELLSF 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G G++ + G ++ L + + ++ L
Sbjct: 70 NGFLTT-LNQIIIGVAMGMVTQFMIQTFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L + L V D H ++ + +V S+ ++PIG F L T F + L +S
Sbjct: 129 LFMFLATLFFLVSDGHLKMIHLVVLSFKSLPIGTHSLTAVDFRELALWLGTMFKVALSMS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 189 LSGIVALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLCWYILSGLFSHYELFWAEG 248
>gi|224826620|ref|ZP_03699721.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002]
gi|224601221|gb|EEG07403.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002]
Length = 258
Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ R+ ++ P S P + + FA+ +++L+P L +
Sbjct: 11 ALVSLFVWPFARIMGVLLADPLFSSRSAPARFKAGFALLLTLLLVPLLPPQPAIPVVSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+++ +L +G GL++RV ++ G V+ T +GL + ++ +
Sbjct: 71 G--VAVLVQQLLIGLALGLVMRVVITAVEMAGFVMGTQMGLGFASFYDPINAAQVPTIAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ + L ++ H V L++S+ T+PIG L + + F L L+
Sbjct: 129 ILTLFTFLLFLLMGGHQVVIEILLESFRTLPIGMTLPP-DRLKALAEWGGHIFNWGLWLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++IG++ + PQ I+ P + +G L LS+ ++V +
Sbjct: 188 LPVVAALLVTNLAIGVMTRASPQFNIFTFGFPLTLLVGFAALYLSVPLMVPAIESIYREA 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|330505668|ref|YP_004382537.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina NK-01]
gi|328919954|gb|AEB60785.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina NK-01]
Length = 264
Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 104/237 (43%), Gaps = 4/237 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + CR+ + + + P + + ++VR+ A+A ++ L L D + +
Sbjct: 13 TSLQAYWWPFCRIAALLSMAPLFNHKAVSVRVRVLLALALTVALGAALPDMPQIDPLSLK 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS-LAETPLN 125
+ L ++ G + GL +++ G V+ST +G+++ + + + +
Sbjct: 73 GLMTAL--EQIAFGVLLGLTLQLVFTIFMLVGEVVSTQMGMSMARYNDPVNGVSSSSIIY 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L I+ +L + ID H L +S+ P+G L+F SF+ + +
Sbjct: 131 QLYFILLVLLFFAIDGHLVTVSVLYQSFLFWPVGSGLHFQG-AQSFIQAFPWVLAAAVLV 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P +F + GLLN++ P + ++ + P I +G L + L++ + + H
Sbjct: 190 TLPVVFCLTLVQFCFGLLNRISPAMNLFSLGFPISILMGLLCIYLTLPNLPDSYLHL 246
>gi|167585024|ref|ZP_02377412.1| flagellar biosynthetic protein FliR [Burkholderia ubonensis Bu]
Length = 260
Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 104/241 (43%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + + P + +P +V++ A ++V+ P L + F +
Sbjct: 11 AWLTAFLWPFVRMLALVAVAPVTGHASVPGRVKIGVAAFMALVVAPTLGAMPAVTVFSAQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ V+ + +G G +++ Q G I ++GL T S A +
Sbjct: 71 GIWI--VVTQFLIGVAMGFTMQIVFAAAQAAGDAIGLSMGLGFATFFDPHASGATPVMGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +LA D H QV AL S+ +P+ EL + + T F + L L+
Sbjct: 129 FLNAVAILAFLAFDGHLQVLAALAASFQALPVSAELLHAPGWRTLAAFGATVFQMGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQ+ I+ + P + +G L + L + +V F F G
Sbjct: 189 LPVVAALLIANLALGILNRAAPQVGIFQVGFPVTMLVGLLLVQLMVPNMVPFFGRLFDMG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|83309717|ref|YP_419981.1| flagellar biosynthesis protein FliR [Magnetospirillum magneticum
AMB-1]
gi|82944558|dbj|BAE49422.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1]
Length = 254
Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 119/247 (48%), Gaps = 1/247 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+T ++ + FL+ R+G+ +ML PGL S + ++RL A++ + V+LP + +
Sbjct: 2 LTDLLQLDIFRFFLVFTRIGAALMLFPGLGGSLVSTRIRLLLALSVAFVMLPVVGASFPA 61
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ V E +G G +I L GS+I GL S
Sbjct: 62 -VPRSVGGMLLAVFGEAVVGVYLGTVIMFIMSTLNMAGSMIGYQTGLTNAFSFDPIAQQQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
L + IGL+A++ D HH +F A+ +SY P GQ L FG+ + ++ TF
Sbjct: 121 SQLLTGFLANIGLVAVFATDMHHLMFQAVFESYYLFPPGQPLQFGDYAETLGHLATDTFK 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ + ++P + F +VF +GLL++LVPQ+ ++F+ P + +G +++ +++ F
Sbjct: 181 VGTQFAAPLVVFGLVFYTGLGLLSRLVPQLQVFFVGMPVQVMVGMWLFMVTMPLVISLFL 240
Query: 241 HSFLYGF 247
F G
Sbjct: 241 RFFESGL 247
>gi|312879605|ref|ZP_07739405.1| flagellar biosynthetic protein FliR [Aminomonas paucivorans DSM
12260]
gi|310782896|gb|EFQ23294.1| flagellar biosynthetic protein FliR [Aminomonas paucivorans DSM
12260]
Length = 259
Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 91/229 (39%)
Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77
R + P P+ VR AM ++V+ P + + F + + E
Sbjct: 19 RFLGLLFSNPVFLAPAWPLPVRFWTAMLLAVVVTPGVGLSYPGPLFAHWGFLFVAAGREF 78
Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137
+G GL + LQ +G T +GL + T + + ++G+ +
Sbjct: 79 LIGVTLGLFAGLPLYALQMSGFFEGTQMGLGIATFFDPMSETQVALIGQMKYLLGVWFFF 138
Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ H + AL +S IP+ + G + LQ F++ L+++ P ++ +
Sbjct: 139 HWNGHLLLIEALTESLRLIPLAKGTWGGGAAIPWGIWLQKLFVLSLQMALPLFGALLLAD 198
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ +G + + VPQ+ ++ + P IGLG L + + V F +
Sbjct: 199 VGMGFVARTVPQMNLFVLGIPLKIGLGLFILLAVLPLTVDLFHSTVERA 247
>gi|239817149|ref|YP_002946059.1| flagellar biosynthetic protein FliR [Variovorax paradoxus S110]
gi|239803726|gb|ACS20793.1| flagellar biosynthetic protein FliR [Variovorax paradoxus S110]
Length = 264
Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 91/241 (37%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P + Q+++ A ++ + P L +
Sbjct: 14 AWLTAFLWPFVRMLALVSTAPVFGEPGVARQIKVAIAALLAVAIAPTLGPMPAVPVVSAG 73
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ ++ +G G +R+ + G I +GL+ + A +
Sbjct: 74 GVWI--IVQQVLIGGAIGFTMRMVFAAVLAAGEYIGLQMGLSFASFFDPMAGGATMVVAR 131
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ ++ +L +D H + AL +S+ T+PI + V+ F L L+
Sbjct: 132 LMHMLAILLFLAVDGHLLMLAALAESFHTLPIADAPLAAQGWMLLVSGGGRIFANGLMLA 191
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN+ PQ I+ + P + G L L + + F
Sbjct: 192 LPLVTALLTLNLAMGILNRASPQFSIFAVGFPLTLLAGIGMLQLLMPQLGAFLEPRFAAA 251
Query: 247 F 247
Sbjct: 252 L 252
>gi|170743255|ref|YP_001771910.1| flagellar biosynthetic protein FliR [Methylobacterium sp. 4-46]
gi|168197529|gb|ACA19476.1| flagellar biosynthetic protein FliR [Methylobacterium sp. 4-46]
Length = 252
Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 128/241 (53%), Gaps = 1/241 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + + + L RVG+ +ML+PG+ + + ++RL FA+ ++VL PF+ +
Sbjct: 1 MNLLLPGLAAAYLLTFARVGTLVMLMPGIGETVVAPRLRLAFALLVALVLFPFVRPLLPQ 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q A +++ E+ +G V GL +R LQ TG++++ +GL ++ + S
Sbjct: 61 QAGTGPA-LIGVLIGEIAVGLVLGLSVRAVLAALQTTGTIVAQQLGLAYAMTVDPTTSGQ 119
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L S + ++G+ + D HH + SY +P G+ + + + F
Sbjct: 120 QATLGSFLTMLGITLVLAADLHHLAIAGIRDSYALMPPIGVPATGDAAAFAIRAVARGFA 179
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +++++PF+ F I+FN+ +G+L++L+PQ+ ++F++TP I +G L S+ +++ F
Sbjct: 180 LAVQIAAPFIAFGILFNLGLGVLSRLMPQMQVFFVATPASILIGMAVLLASLGVVMGVFV 239
Query: 241 H 241
Sbjct: 240 E 240
>gi|308273531|emb|CBX30133.1| hypothetical protein N47_D29420 [uncultured Desulfobacterium sp.]
Length = 260
Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 41/229 (17%), Positives = 106/229 (46%), Gaps = 1/229 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
I+ RVG + L+P + IP+ V+ + +++L P +
Sbjct: 14 FLFILIRVGVILFLMPFFNSRIIPVPVKAGLTIILAMILFPVSGPYTGV-YPDTTWGMFG 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ EL G + GL+ + + G++ G + IG ++ + + L+++ ++
Sbjct: 73 LIIGELITGMILGLMTQFFFEGIRMMGQIAGMEIGFSIANVLDPQSGFQTSILSNIAYLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
++ +++ H+ + A+ +S+ I G +F ++ F+I +++ +P +
Sbjct: 133 AIVLFLILNGHYIILNAIRESFAIIQPGSVHLTQQVFKEMLHRSGEMFVIAIQIGAPVIS 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ ++ GL+ +L+PQ+ + ++ P I G +F +S+ ++++
Sbjct: 193 AILFIQLAFGLITRLLPQMNVMVVAFPLQIVTGLIFFGISLWVMLHFIE 241
>gi|85716546|ref|ZP_01047516.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
gi|85696547|gb|EAQ34435.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
Length = 256
Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 120/234 (51%), Gaps = 1/234 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ R+G+ +MLLPG +IP++V+L A+ ++++LP + + A
Sbjct: 13 AAFMLVFARIGAMVMLLPGFGEGFIPVRVKLAIALLLTLIILPLHRTAYHVDT-QSIAPL 71
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ L++ E+ +G V G RV L GS+I+ +GL TS+ + + + +
Sbjct: 72 TVLLVHEIIIGVVLGATARVTLAALHVAGSIIAQQLGLGFVTSVDPTQGQQGALMGNFLT 131
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+PF
Sbjct: 132 LLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGAFKIGLQLSAPF 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L F +VFNI +G+L +L+PQ+ +YF+ P I +G + + ++ +
Sbjct: 192 LVFGLVFNIGLGVLARLMPQMQVYFVGVPLSILIGFMIFAAVLASMMGTYMDYL 245
>gi|251797426|ref|YP_003012157.1| flagellar biosynthetic protein FliR [Paenibacillus sp. JDR-2]
gi|247545052|gb|ACT02071.1| flagellar biosynthetic protein FliR [Paenibacillus sp. JDR-2]
Length = 264
Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 104/245 (42%), Gaps = 6/245 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
LI CR+ S ++ P +M +P ++ S+++ + + Q
Sbjct: 6 EYFPIFLLIFCRMTSFFVVAPLFNMRGVPSTFKIGLGFFLSLIVF--MTYGLKEQTVPMD 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A Y + E+ +G + G ++ ++ +Q G+++ IG + + ++ L +
Sbjct: 64 AEYILYIFREVLIGLLMGYIVYLFMTVVQTAGALMDMQIGFAMSNVIDPMTGVSAPLLGN 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIM 182
++ ++ ++ HH + L+ SY +P+ EL G+I + F++
Sbjct: 124 FKYMLLIMVFLAVNGHHYLLTGLMDSYKWMPLSNELFSRIYDGSITDFLSRAVGNAFLLA 183
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+++++P + + ++ +G L K PQ ++ I P + LG L L + I F
Sbjct: 184 MQVAAPLVIAMFLTDVGLGFLAKTAPQYNVFVIGIPLKLLLGLGLLILVLPGISAIFERL 243
Query: 243 FLYGF 247
F F
Sbjct: 244 FAIMF 248
>gi|83858791|ref|ZP_00952313.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
gi|83853614|gb|EAP91466.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
Length = 252
Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 59/238 (24%), Positives = 119/238 (50%), Gaps = 1/238 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + ++ R+G +ML+PG+ + IP+++RL FA+AFS V+ P + ++ A
Sbjct: 10 TIFAAAMVFARMGGILMLMPGIGETSIPVRLRLAFALAFSFVIGPIVAPSLPAP-PDTLA 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ V +E +G + G R+ G +I GL + S + A
Sbjct: 69 GVAITVGLETLIGVMIGAASRILLTAGAIAGQIIGYQTGLAMAQSFDPAQGQAGVLPAQF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +I ++ + V H ++ A SY +P GQ +G+ + + F+I ++++S
Sbjct: 129 LNLIFIVIVLVTPLHQEMLLAAAGSYELMPAGQPPMWGDAAYWALELFIDAFVIGVQIAS 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + F +VF + +G+L++L+PQ I+FI+ P I +G + +S+ +V ++ +
Sbjct: 189 PLIVFGLVFYLGLGVLSRLMPQAQIFFIAMPLNILIGFSIMAMSLGAMVMLWTDRYER 246
>gi|146282914|ref|YP_001173067.1| flagellar biosynthesis protein FliR [Pseudomonas stutzeri A1501]
gi|145571119|gb|ABP80225.1| flagellar biosynthetic protein FliR [Pseudomonas stutzeri A1501]
gi|327481254|gb|AEA84564.1| flagellar biosynthesis protein FliR [Pseudomonas stutzeri DSM 4166]
Length = 258
Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 110/241 (45%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L + R+ + +M +P + +P++VRL A+A ++VL+P L +++
Sbjct: 11 GWVGQFLLPLFRIAALLMSMPLIGTQLVPVRVRLYLALAIALVLVPTLPPMPVVESLS-- 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ +L +G + G +++++ +G +++ +GL + + ++ ++ L
Sbjct: 69 LASLLLIAEQLLIGVMFGFVLQLFFHVFIVSGQLLAMQMGLGFASMVDPANGISVPVLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ +L ++ H V L +S+ T+P+G L N F L L L
Sbjct: 129 FFNMLVILLFLSVNGHLVVLEILAESFVTLPVGGGL-STNHFWEVAGKLGWVLGAGLLLV 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ GL+ + PQ+ I+ I P + LG + + + + I Q+
Sbjct: 188 LPAITALLVVNLAFGLMTRAAPQLNIFSIGFPLTLVLGLIIVWIGMADIFAQYQIFVSEA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|83747645|ref|ZP_00944681.1| FliR [Ralstonia solanacearum UW551]
gi|207739726|ref|YP_002258119.1| flagellar biosynthetic protein flir [Ralstonia solanacearum
IPO1609]
gi|83725697|gb|EAP72839.1| FliR [Ralstonia solanacearum UW551]
gi|206593108|emb|CAQ60014.1| flagellar biosynthetic protein flir [Ralstonia solanacearum
IPO1609]
Length = 262
Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 96/241 (39%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV + I + P S + IP +++ F + ++ L P L +
Sbjct: 11 GWIALYWWPLVRVLAFIAMAPPFSNTEIPTSIKVAFGVVLTVALAPMLPVPQGVSVGSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G G +++ + G ++S IGL T + + + L
Sbjct: 71 GLWITLL--QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I + + A D H + +AL S+ +P+ G + + F + +R++
Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAVFALAVRIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ +L++ + + + + +G + + + + + S +
Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|148553142|ref|YP_001260724.1| flagellar biosynthetic protein FliR [Sphingomonas wittichii RW1]
gi|148498332|gb|ABQ66586.1| flagellar biosynthetic protein FliR [Sphingomonas wittichii RW1]
Length = 260
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + + + R G+ + P +PMQ+R A+A I L + + V
Sbjct: 10 ETQLWLWMIAMIRPGAAFIAAPVFGAPQVPMQLRAVVALAIGIPALANTPFVMPVGGIVT 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ LV E+ G G +++ G VI A+GL M + ++
Sbjct: 70 IEGF-LLVAGEILAGLALGFAVQIGFSAALVAGEVIGNAMGLGFAGMMDPATGSPSPAVS 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ H Q+ +V+SY +P G+ F L +
Sbjct: 129 QYLSLLATFLFLATGGHLQLAAIIVESYRALPPGEAWLGARSIQGLALFGGDLFAAGLAI 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F I+ + + +L + PQ+ I+ + P + G + L ++ ++ + +
Sbjct: 189 ALPVGFALILVQLVMAMLARSAPQMNIFSVGLPATLMAGLVLLAIAAPVMADGITAAIQR 248
Query: 246 GF 247
G
Sbjct: 249 GL 250
>gi|239826630|ref|YP_002949254.1| flagellar biosynthesis protein FliR [Geobacillus sp. WCH70]
gi|239806923|gb|ACS23988.1| flagellar biosynthetic protein FliR [Geobacillus sp. WCH70]
Length = 257
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 6/241 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ RV S LP S IP ++ + S ++ +
Sbjct: 8 FPAFLLVFARVASFFATLPLFSYRTIPAVHKIGLSFFLSWMMFFSISK----PAIPLDGM 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LV+ E+ +G GL + +Q G +I +G + + + +
Sbjct: 64 YVLLVVKEVLVGLFIGLFAYMIVSAIQIVGGLIDFQMGFAIANVIDPQTGAQSPLVGQYL 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLS 186
LL L +D HH + + SY IP+ +F G++ V T F+I ++S
Sbjct: 124 YTFALLLLLSVDGHHLLLDGVFYSYRFIPLDHWPHFDHGHVAKYIVKSFSTMFIIAFQMS 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + ++++G++ + VPQ+ I+ + P I + L +++ + H F
Sbjct: 184 VPLVGSLFLVDVALGIVARTVPQLNIFVVGFPVKIAAAFILLIVTMATLFIAVRHLFDMM 243
Query: 247 F 247
F
Sbjct: 244 F 244
>gi|163758040|ref|ZP_02165128.1| flagellar biosynthesis protein R [Hoeflea phototrophica DFL-43]
gi|162284329|gb|EDQ34612.1| flagellar biosynthesis protein R [Hoeflea phototrophica DFL-43]
Length = 251
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 97/247 (39%), Positives = 142/247 (57%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M PE +++LF CR+G CIM+LPG S +P+Q+RL A+A S+ LLP LW+T+
Sbjct: 1 MMSDPEGTILALFAAFCRIGGCIMVLPGFSSFRVPVQIRLFIAVAISMALLPMLWETLYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ EL +G GL+ R L LQF G+ +S AIG N G+ ++
Sbjct: 61 NVQTGGGIYIGLIGTELLIGVTFGLIARYIVLALQFAGTGLSMAIGFNAAPGGGLLETEQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E + SLI +L L++ DFHH V AL++SY +P+G + + + L FM
Sbjct: 121 EGNITSLITFTAVLLLFLSDFHHMVIEALLRSYDFMPLGSGFDPQMALMTLTDTLAGAFM 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
++LRL+SPFL + + FN+SIGL+NKL P IP+YFI+ P+++ G L L + QF
Sbjct: 181 LVLRLASPFLVYSMAFNLSIGLINKLAPAIPVYFITIPFILAGGLLLLFFGSQEFFKQFL 240
Query: 241 HSFLYGF 247
F+ F
Sbjct: 241 DGFVPLF 247
>gi|207728356|ref|YP_002256750.1| flagellar biosynthetic protein flir [Ralstonia solanacearum MolK2]
gi|206591602|emb|CAQ57214.1| flagellar biosynthetic protein flir [Ralstonia solanacearum MolK2]
Length = 262
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 96/241 (39%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV + I + P S + IP +++ F + ++ L P L +
Sbjct: 11 GWIALYWWPLVRVLAFIAMAPPFSNTEIPTSIKVAFGVVLTVALAPMLPVPQGVSVGSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G G +++ + G ++S IGL T + + + L
Sbjct: 71 GLWITLL--QVAIGMALGFCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I + + A D H + +AL S+ +P+ G + + F + +R++
Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGSAIFALAVRIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ +L++ + + + + +G + + + + + S +
Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|327394277|dbj|BAK11699.1| flagellar biosynthetic protein FliR [Pantoea ananatis AJ13355]
Length = 261
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 104/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + + P LS + +V++ A + +L+P L + +
Sbjct: 11 HWVSQFFWPLVRILALLATAPVLSEKAVSKRVKIGLAAMITWILIPNLP---PVNVTLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ ++ +G G ++ ++ G +I +GL+ T + L L
Sbjct: 68 PAGFMLLIQQMLIGIAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPASRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L + H + L S+ T+PIG E N F + V F+ + L+
Sbjct: 128 FLDMLAMLLFLTFNGHLWLISLLSDSFHTLPIGGEPLQANAFMALVKSGSMIFLNGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+ +GLLN+L PQ+ I+ I P + +G L + L + ++ H F
Sbjct: 188 LPLIVLLLTINMVLGLLNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFGEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|118588697|ref|ZP_01546105.1| flagellar biosynthesis protein R [Stappia aggregata IAM 12614]
gi|118438683|gb|EAV45316.1| flagellar biosynthesis protein R [Stappia aggregata IAM 12614]
Length = 257
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 1/237 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ R+G+ +MLLP L S IP + RL A+A ++VL P ++ N
Sbjct: 15 FMLMFARLGTMVMLLPALGESTIPTRFRLTIALALTMVLYPVGSQYYPVEVTSNTYRMIA 74
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-SLAETPLNSLIGI 130
L+ E+ +G GL ++ T LQ G +++ GL ++ + + I
Sbjct: 75 LLFGEVAIGLGIGLCAKMITSVLQIAGMIMANQSGLAFALGTDFANQGQQGALFGNFLSI 134
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+G+ ++V D H+ V AL S+ P G G+ + + F I +R+S+PFL
Sbjct: 135 LGITLVFVSDSHYLVIAALHDSFMIFPPGLAPPVGDFSQNATETVAHVFSIAVRMSAPFL 194
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+VF +GLLNKL+PQ+ I+FI+ P I +G L + I ++ + F
Sbjct: 195 VVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIAIGLFMLMVLITTLMMFYLDHFQEAL 251
>gi|52080240|ref|YP_079031.1| flagellar biosynthesis protein FliR [Bacillus licheniformis ATCC
14580]
gi|52785617|ref|YP_091446.1| flagellar biosynthesis protein FliR [Bacillus licheniformis ATCC
14580]
gi|52003451|gb|AAU23393.1| flagellar protein [Bacillus licheniformis ATCC 14580]
gi|52348119|gb|AAU40753.1| FliR [Bacillus licheniformis ATCC 14580]
Length = 258
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 96/241 (39%), Gaps = 6/241 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ + + +P S IP ++ FA ++V + L
Sbjct: 7 FPAFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSFQAIEKPPHLDV---DGI 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y L M E +G + GL+ + +Q GS I +G + + + +
Sbjct: 64 YMMLAMKEALIGLLLGLIAYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVGQFL 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE---LNFGNIFSSFVNMLQTTFMIMLRL 185
+ LL + ++ HH + + SY IP+ + T F+ +L
Sbjct: 124 YTMALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSFGSEEFAEFIAKSFNTMFITAFQL 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ H F +
Sbjct: 184 SAPVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHVFEF 243
Query: 246 G 246
Sbjct: 244 A 244
>gi|6066713|emb|CAB58259.1| HrpC protein [Ralstonia solanacearum]
gi|1097292|prf||2113360U hrpC gene
Length = 282
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 80/227 (35%), Gaps = 4/227 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ + +LP + + R A +I++ + L ++ L E
Sbjct: 30 VRIMTLFSILPATNDQMLTGIARNGVVYALAILVA--AGQPVGLAALLSAGQLFMLTCKE 87
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+FLG G + G++I G N TP+ + + +G+ L
Sbjct: 88 IFLGACLGFAASTVFWVAETAGTLIDNVSGFNNVQMTNPLRGDQNTPIGNTLVNLGVTLL 147
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + +S+ P+G L N + + + F ++L++P + +
Sbjct: 148 YAAGGMLFLLGVVFESFKWWPLGAALPDMNAVAQSFLLQQTDSIFSTAVKLAAPVMMTML 207
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ + IG + + ++ + P + L + + + Q
Sbjct: 208 LIDAGIGFVARAADKLEPTSLGQPIKGAVALLMVMALVTALSTQVKG 254
>gi|107100882|ref|ZP_01364800.1| hypothetical protein PaerPA_01001912 [Pseudomonas aeruginosa PACS2]
gi|116049393|ref|YP_791804.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218892679|ref|YP_002441548.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa LESB58]
gi|254234547|ref|ZP_04927870.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa C3719]
gi|254239798|ref|ZP_04933120.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 2192]
gi|296390185|ref|ZP_06879660.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PAb1]
gi|313106447|ref|ZP_07792678.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 39016]
gi|115584614|gb|ABJ10629.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166478|gb|EAZ51989.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa C3719]
gi|126193176|gb|EAZ57239.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 2192]
gi|218772907|emb|CAW28719.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa LESB58]
gi|310879180|gb|EFQ37774.1| flagellar biosynthetic protein FliR [Pseudomonas aeruginosa 39016]
Length = 258
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S L + RV + +M +P + +P++VRL A+ +VL+P L + +
Sbjct: 11 GWIASFVLPLFRVAALLMTMPVIGTQLVPVRVRLYLALGVCVVLVPNLPPMPQVDALSMK 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L+ ++ +G + G +++ G +IS +GL + + ++ ++ L
Sbjct: 71 AML--LIGEQILVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANGVSVPVLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L ++ H VF + +S+ T+P+G+ L GN F L L L+
Sbjct: 129 FFTMLVTLLFLAMNGHLVVFEVIAESFVTLPVGEGL-SGNHFWIIAGKLGWVMGAALLLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ G + + PQ+ I+ I P + LG + L + ++ Q+
Sbjct: 188 LPAITALLVVNLAFGAMTRAAPQLNIFSIGFPLTLVLGLVILWIGTADLLSQYQVLAGEA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|225375341|ref|ZP_03752562.1| hypothetical protein ROSEINA2194_00966 [Roseburia inulinivorans DSM
16841]
gi|225212830|gb|EEG95184.1| hypothetical protein ROSEINA2194_00966 [Roseburia inulinivorans DSM
16841]
Length = 259
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI+ RV + + P MS +P QV++ + ++++ F + + Y+
Sbjct: 14 FILILVRVSCFVYIAPFYGMSNVPNQVKIGLSAMIALLVSGF--ADVSQVEYTGLIGYAV 71
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E G + GL V + F G++I IGL++ T ++ T +L
Sbjct: 72 IVLKEGITGLLIGLAANVCNSIILFAGNIIDMDIGLSMATEFDPINNAQVTLTGNLYNYF 131
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
L+ L V D HH + A V ++ IP+ GQ ++ ++ S + F+I R+ P
Sbjct: 132 ILMLLVVTDMHHYILRAFVDAFTVIPVNGQVFDWEHLMRSMTTYMGDMFVIAFRIILPVF 191
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
++ N +G++ K+ PQ+ ++ + I +G + L L++ ++ + F
Sbjct: 192 ACIMILNCILGIMAKVSPQMNMFAVGMQMKIMVGFVVLFLTVSLLPSVANFIFTEM 247
>gi|21242685|ref|NP_642267.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri
str. 306]
gi|21108158|gb|AAM36803.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 257
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R G+ + +P + +P +VR+ A ++VL P L + F +
Sbjct: 10 AMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQ 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G ++++ G ++S + GL+ + +
Sbjct: 70 A--VLSIARELAVGASMGFMLKLMFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
I L + + H V LV SY +PIG L F+ + L L
Sbjct: 128 WFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + + P + LG L F
Sbjct: 188 ALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDT 247
Query: 246 GF 247
F
Sbjct: 248 AF 249
>gi|146277692|ref|YP_001167851.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC
17025]
gi|145555933|gb|ABP70546.1| flagellar biosynthetic protein FliR [Rhodobacter sphaeroides ATCC
17025]
Length = 266
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SLF R+G+ ++ P ++P+ VR+ + ++ +L + +
Sbjct: 14 GSLTSLFFATLRIGAFLLASPAFGGRFVPLPVRIMATVVLTLPVLG--RADLPGPEALAS 71
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++M E+ +G GL++ V G I+ GL + S +
Sbjct: 72 LSAVPMMMQEIAIGLSAGLVLTVLFSAAALAGDRIAATAGLGFAAQIDPSAGGQTPVVAQ 131
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ G+ +D H F L++SY ++P G G + + F++ L++
Sbjct: 132 IFGLALTTVFLALDGHLSAFEILLRSYESLPPGAPFAPGPFLEAGIGAGGRMFLVGLQIM 191
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ NI+IG++ + PQ+ ++ P + + L L++ + FS
Sbjct: 192 MPVVAALVLINITIGVITRSAPQLNVFSFGFPVTMSATLILLFLTVPGTMGAFSSLVADS 251
Query: 247 F 247
Sbjct: 252 L 252
>gi|299131772|ref|ZP_07024967.1| flagellar biosynthetic protein FliR [Afipia sp. 1NLS2]
gi|298591909|gb|EFI52109.1| flagellar biosynthetic protein FliR [Afipia sp. 1NLS2]
Length = 259
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 61/237 (25%), Positives = 119/237 (50%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L+ R+G+ +MLLPG + +P+++RL A+ ++++LP +
Sbjct: 10 ALAATFMLVFARIGAMMMLLPGFGEANVPVRLRLGIALMLTLIMLPLHRAAYHVDLSSMT 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ +V E+ +G V G R L GS+I+ +GL T++ + + +
Sbjct: 70 SVMVLMV-HEIIVGVVLGATARFTLAALSVAGSIIAQQVGLGFVTAVDPTQDQQSVIVAN 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I+G+ ++ D H+ V AL SY G+ + G++ + F I ++LS
Sbjct: 129 FLTILGIALIFATDTHYLVLAALSDSYTLFSPGELMPSGDVAALATKAFTVAFKIGVQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+PF+ F +VFN+ +G+L +++PQ+ +YF+ P I G L L + + ++ F F
Sbjct: 189 APFIIFGLVFNLGLGMLARMMPQMQVYFVGVPLSILAGFLLLGVVLVAVMGTFLTYF 245
>gi|169831896|ref|YP_001717878.1| flagellar biosynthetic protein FliR [Candidatus Desulforudis
audaxviator MP104C]
gi|169638740|gb|ACA60246.1| flagellar biosynthetic protein FliR [Candidatus Desulforudis
audaxviator MP104C]
Length = 253
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L+ R+ + I P +M IP V+ A S+ LLP +
Sbjct: 4 LVTFLLVFTRLAAFIAACPVFAMREIPPTVKAGLAFVLSLALLP--SAGTAAPPLDSFLG 61
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+S + E +G G+ + GL G I IG + M ++ L+
Sbjct: 62 FSLALAKEAAVGLGLGIFTSLVFHGLLLAGQYIGFQIGFAIAEMMSPGTEGERAIVSRLM 121
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L+ ID HH + L KS+ +P+G + F+I L +++P
Sbjct: 122 WLFALVFFVSIDGHHLLIAGLAKSFELVPLGAAVAQMKTTLFMAKAYGGLFVIALTIAAP 181
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ +V + +GL+ ++VPQI ++ + P+ + G L ++I +I + + F
Sbjct: 182 VMAVLLVTDAILGLMVRMVPQINVFMLGFPFKVFAGLFALMVTIPVIGWALTRVFGRM 239
>gi|90418351|ref|ZP_01226263.1| putative flagellar biosynthesis protein FliR [Aurantimonas
manganoxydans SI85-9A1]
gi|90338023|gb|EAS51674.1| putative flagellar biosynthesis protein FliR [Aurantimonas
manganoxydans SI85-9A1]
Length = 251
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 86/246 (34%), Positives = 137/246 (55%), Gaps = 1/246 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59
M++ ++ SLFLI CR GSC++L+PG S S +P+QVRL ++A S+ L P L T+
Sbjct: 1 MSVELSELVFSLFLIFCRFGSCLLLMPGFSSSRVPLQVRLFLSLAVSVALSPALLPTLQP 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
L + L++ E+ G GLL R + + LQF G V++ +IG+ +Q + I +S
Sbjct: 61 LVAAADDNGKLALMISEILNGLFIGLLGRSFMIALQFAGHVVANSIGMGMQMGVPIDESD 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ SLI + ++V++ H ++ ALV SY +P + + + L F
Sbjct: 121 PMPAVASLITLTATTLIFVLNLHAEIARALVASYTAMPAAAGFSIRGSLVNITDNLDEAF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++ LR+SSPF+ + +V N +IGL NKL P IPIYFIS P+++ G + L +I + F
Sbjct: 181 LLCLRISSPFVLYGVVVNFAIGLANKLTPTIPIYFISLPFVLAGGLVLLGYTISDFLILF 240
Query: 240 SHSFLY 245
F
Sbjct: 241 MQDFER 246
>gi|90415340|ref|ZP_01223274.1| Bacterial export protein, family 1 [marine gamma proteobacterium
HTCC2207]
gi|90332663|gb|EAS47833.1| Bacterial export protein, family 1 [marine gamma proteobacterium
HTCC2207]
Length = 256
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 107/239 (44%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+L + RV + ++ P S+ + ++VR+ A ++++ P + I A
Sbjct: 12 FYTLLWPMIRVSAFLLASPFFSLRAVNVRVRVLLAALLTLMIYPLVDWPIIDPY---SAA 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + ++ +G V G+L+++ L G +S+A+GL + + + ++
Sbjct: 69 GLREIFNQILIGTVMGMLLQIVNASLVIGGQAVSSAMGLGMANMIDPNMG-NVPVISQFF 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
I L I H V +++S+ T+P+GQ L + + + F+ L L+ P
Sbjct: 128 IICSTLIFMGIGGHVLVISLILESFKTLPVGQMLAPDMLMAVLLQWSSMIFLGGLLLALP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + NI +G++ + P + I+ + P +I +G + L S+ I Y+ + F
Sbjct: 188 IMVSLLFVNIGVGVITRAAPALNIFAVGFPAMIMVGMVLLATSMTSIGYRIQWLWRESF 246
>gi|51246525|ref|YP_066409.1| flagellar biosynthetic protein (FliR) [Desulfotalea psychrophila
LSv54]
gi|50877562|emb|CAG37402.1| related to flagellar biosynthetic protein (FliR) [Desulfotalea
psychrophila LSv54]
Length = 260
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 104/243 (42%), Gaps = 1/243 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ P +++ RV + +P +S P Q+++ A + ++VL P + I ++
Sbjct: 5 LIPIEQFQLFLVVLSRVAGFVGAIPVISSVQSPKQIKIALACSVALVLFPIMSPVIHIKE 64
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
+ ++ L++ E+ +G G ++ ++F +VI +G
Sbjct: 65 LTMPS-FALLIVAEVLVGTTIGFAAKLIFTSIEFGATVIGYQMGFAAANVFDPQTKGQVA 123
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
++ +L ID HH + SY +P GQ G + + F +
Sbjct: 124 LISQFQNSFAILIFLAIDGHHIFIHTASISYQFLPPGQFNYSGGAVPYLIELTAHMFQMG 183
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++ S+P L ++ + +G+L+++ PQ+ ++ +S P IGL + L++ ++ S
Sbjct: 184 IQFSAPVLAVLLLSGLILGILSRVFPQLNVFMLSFPINIGLAFTVISLTLGLLAMLLSRE 243
Query: 243 FLY 245
F
Sbjct: 244 FDQ 246
>gi|254228443|ref|ZP_04921869.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25]
gi|262393600|ref|YP_003285454.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25]
gi|269965691|ref|ZP_06179804.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B]
gi|151939031|gb|EDN57863.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25]
gi|262337194|gb|ACY50989.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25]
gi|269829759|gb|EEZ83995.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B]
Length = 260
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M++ ++ ++RL +A + ++P + ++
Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAVPQDIELLSFR 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MTIAEQMIIGIAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ T+PIG F L F L +S
Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGSLNAVDFREMAGWLGIMFQTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLLCWYILAGLYSHYEMFWTVG 248
>gi|95929866|ref|ZP_01312607.1| flagellar biosynthetic protein FliR [Desulfuromonas acetoxidans DSM
684]
gi|95134162|gb|EAT15820.1| flagellar biosynthetic protein FliR [Desulfuromonas acetoxidans DSM
684]
Length = 260
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 106/243 (43%), Gaps = 1/243 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + P + + + RV + + +P +P + ++ A+ + ++ P + +
Sbjct: 3 LLLFPVDKLQLALICLARVAAILGSMPVFGSGQVPARAKVILALFMTFLIFPGVEPLLPS 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+F L+ E LG + G + R+ ++F G+++ +G +
Sbjct: 63 YSF-EPLPLMLLIANEALLGIMMGFIARLIFTAVEFGGTIVGYQMGFAAANVYDPQNQRQ 121
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ ++ + +L +D HH A+V SY +P G + + F+
Sbjct: 122 VSLISQFQNVFAILVFLALDVHHLFIEAMVDSYRQLPPGLLDFSSEAVPFIMELTGHMFV 181
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +R S+P L ++ + +G+L ++ PQ+ ++ +S P IG+ + + L++ ++V +
Sbjct: 182 LAIRFSAPILAVLLLSGLVLGILARVFPQLNVFLLSFPINIGMAFIIIGLTMNMVVAMLN 241
Query: 241 HSF 243
F
Sbjct: 242 REF 244
>gi|298528401|ref|ZP_07015805.1| flagellar biosynthetic protein FliR [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512053|gb|EFI35955.1| flagellar biosynthetic protein FliR [Desulfonatronospira
thiodismutans ASO3-1]
Length = 262
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S +L RV + LLP +P+ ++ + S+ L P L +
Sbjct: 9 ETVFSFWLTFFRVSLVVFLLPFFGGEAMPVPIKAALCIVLSLALWPHLSFDAQY-FPEHP 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++M EL LG + GL++ +Q G +I+ +G + + L E+
Sbjct: 68 AQIAVMIMGELVLGLILGLIVHFLFAAIQTGGDLIAFQMGFKMMNVVDPLTGLQESITTQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +L I+ H + L +S+ IP G + + + F++ +++
Sbjct: 128 FLYMCSMLVFLSINGHLYMLMGLTQSFDLIPPGGLFITPELINQIIYYSSQIFVLAFKIA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
SP + + N+ + + + PQ+ + + P I +G LFL L ++I S
Sbjct: 188 SPIIATVFLVNLGLAFMARTAPQMNVLLLGFPIKIAVGLLFLSLVFQLISLYVSGFISD 246
>gi|300722652|ref|YP_003711942.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus
nematophila ATCC 19061]
gi|297629159|emb|CBJ89755.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus
nematophila ATCC 19061]
Length = 260
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 106/246 (43%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ + ++ F + R+ + + P S +P++VR+ A+ + +L+P +
Sbjct: 6 SETLSRLVSDFFWPLVRLLALFSIAPIFSEKQMPIKVRIGLALVITALLVPSIP---SPH 62
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+ +++ ++ +G GL I++ ++ G ++ +GL+ T +
Sbjct: 63 IPIFSIAGIWVLIQQILIGVALGLTIQIAFAVVRHAGEILGLQMGLSFATFFDPTGGPNM 122
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
L+ ++ ++ +L D H + LV ++ TIPI F F+
Sbjct: 123 PILSRILNMLMMLLFLAFDGHLWLLSILVDTFHTIPIQVTQLNPKGFLLLAQSASMIFVN 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ L+ P + ++ N ++G+LN++ PQ+ ++ + P + +G L L I ++
Sbjct: 183 GMMLAMPMITLLLILNFALGMLNRMTPQLSVFVVGFPLTLTVGIFTLSLLIPMLGPFTER 242
Query: 242 SFLYGF 247
F F
Sbjct: 243 LFGEMF 248
>gi|319645981|ref|ZP_08000211.1| flagellar biosynthetic protein fliR [Bacillus sp. BT1B_CT2]
gi|317391731|gb|EFV72528.1| flagellar biosynthetic protein fliR [Bacillus sp. BT1B_CT2]
Length = 258
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 96/241 (39%), Gaps = 6/241 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ + + +P S IP ++ FA ++V + L
Sbjct: 7 FPAFLLVFVRITAFYVTVPLFSYRTIPAVHKIGFAFFLALVSFQAIEKPPHLDV---DGI 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y L M E +G + GL+ + +Q GS I +G + + + +
Sbjct: 64 YMMLAMKEALIGLLLGLIAYMMISAVQIAGSFIDFQMGFAVANVIDPQTGAQSPLVGQFL 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE---LNFGNIFSSFVNMLQTTFMIMLRL 185
+ LL + ++ HH + + SY IP+ + T F+ +L
Sbjct: 124 YTMALLLMLSLNAHHLLLDGIYYSYQYIPVDKMALSFGSEEFAEFIAKSFNTMFITAFQL 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+P + + ++++G++ + VPQ+ ++ + P I + + L + + ++ H F +
Sbjct: 184 STPVVACLFLVDLALGIVARTVPQLNVFVVGLPLKIAITFIMLIICMAVMFSMMQHVFEF 243
Query: 246 G 246
Sbjct: 244 A 244
>gi|110632632|ref|YP_672840.1| flagellar biosynthesis protein FliR [Mesorhizobium sp. BNC1]
gi|110283616|gb|ABG61675.1| flagellar biosynthetic protein FliR [Chelativorans sp. BNC1]
Length = 248
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 90/240 (37%), Positives = 133/240 (55%), Gaps = 1/240 (0%)
Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
PE +++ FL CRVG+C ML+PGL + +PMQVRL A+ S+ LL LWD I
Sbjct: 2 PETAILAAFLAFCRVGACFMLMPGLGSARVPMQVRLFVAVGASLALLAHLWDVIAPHASD 61
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNL-QTSMGISDSLAETP 123
L+ E+ +G + GL+ R+Y L LQF GS I+ G + + I ++ +
Sbjct: 62 RPDILLLLIGSEILIGSLIGLVARLYVLALQFIGSAIALMTGFGMAAGGVAIEENEPQPA 121
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
+ +LI L+ L+V++FHH + ALV SY PI + + + L F +M+
Sbjct: 122 VAALISFSALMLLFVLNFHHAIIEALVASYRLAPIEALFDPRAALTDIADTLSEAFFVMI 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
RL SPF+ + I+ N++ G +NKL PQIPIYFIS P++I G L L I + F+ F
Sbjct: 182 RLGSPFVAYAILINLAFGFINKLTPQIPIYFISLPFVIAGGLLLLYFGIGTFLSLFADGF 241
>gi|260768791|ref|ZP_05877725.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972]
gi|260616821|gb|EEX42006.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972]
gi|315180494|gb|ADT87408.1| hypothetical flagellar biosynthetic protein FliR [Vibrio furnissii
NCTC 11218]
Length = 258
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 96/239 (40%), Gaps = 3/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L+ R ++ P S +P+ ++ A+ FS++ + + F +
Sbjct: 11 EWLGILWWPFVRFSGFFLVAPVFGDSKVPLMTKVLLALCFSLLCAGMVTNVPSFNPFSLQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L + G + GL ++++ G +S +GL++ + +
Sbjct: 71 AVLFGL--YQFSFGLIFGLAVQMFITIFTLAGQALSMQMGLSMAMMNDPNSGSSVAITGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +L +D H V V S+ P+ Q F +I +++ F L +S
Sbjct: 129 IFSLTAMLLFLSMDGHLIVLDVFVDSFTLWPMNQPYPFESI-KHLISLFSWMFSSALIIS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + ++ N++ G ++++ P + ++ + P + LG L +SI I F +
Sbjct: 188 IPAIITMLLSNVTFGFMSRIAPSLNVFVLGFPMTMFLGLFALLISIYGIGDIFFNLLTE 246
>gi|260222418|emb|CBA31962.1| Flagellar biosynthetic protein fliR [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 255
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 97/237 (40%), Gaps = 2/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + P LS PM+ ++ ++ ++ + L D +
Sbjct: 11 QWLSPIIWPFLRVLAVFTSAPVLSSRAFPMRAKIGLSLLVALAIQASLPDAPVISFNDPA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A +V+ ++ +G G +R+ ++ G V+ +GLN S + + +
Sbjct: 71 A--LAVVIQQVVIGLSIGFAVRLVFSSVELAGEVVGFQMGLNFAAFFDPSMNTQSSAVAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I L V++ H V A+ +S+ P+ + F L ++
Sbjct: 129 FFAQIASLLFVVMNGHLMVMMAVTQSFVAFPVSPHFLDALAAMQLQKLGAEVFASALWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + + N+++G+++++ PQ+ I+ I P + +G + + +++ ++ F+
Sbjct: 189 LPMVGILLFTNMALGIISRVSPQMNIFAIGFPITLVVGIVGIAVTLPMLDQPFTALM 245
>gi|305431791|ref|ZP_07400958.1| flagellar biosynthetic protein FliR [Campylobacter coli JV20]
gi|304444875|gb|EFM37521.1| flagellar biosynthetic protein FliR [Campylobacter coli JV20]
Length = 255
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + L+ R+ I+ P S + IPM ++ FA+ ++ L P L+ ++
Sbjct: 12 VATFMLLFARMSGLIVFFPFFSHNSIPMIIKTTFALFLTMYLFPLA----KLEILHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + S + ++
Sbjct: 68 FIIQLLSEIVFGMIAGLMLQIVFAIVMMAGEQIAFTMGFTMASVLDPSSGTNMPITSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+I LL D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 HLIALLFFLAFDGHHLMLLFLSHSLGYINLGGFYPHENLMHYLNMGMLNIFIIGFTMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ + GLL K +PQ + I P I LG + L + +++ F L F
Sbjct: 188 ILGISLLADTIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKDLILEVF 246
>gi|300693347|ref|YP_003749320.1| flir: flagellar biosynthesis inner membrane protein. flir/mope/spar
family [Ralstonia solanacearum PSI07]
gi|299075384|emb|CBJ34679.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR
family [Ralstonia solanacearum PSI07]
Length = 262
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV + I + P + + IP +++ F + ++ L P L +
Sbjct: 11 GWIALYWWPLVRVLAFIAVAPPFANTEIPSSIKVAFGVVLTVALAPMLPVPPGVSVGSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G G+ +++ + G ++S IGL T + + + L
Sbjct: 71 GLWITLL--QVAIGMALGVCVQLVFAAISGAGELMSIQIGLGFATLLDPQQTESSMLLGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I + + A D H + +AL S+ +P+ G + + F + +R++
Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGTAVFALAVRIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ +L++ + + + + +G + + + + + S +
Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMDA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|254418936|ref|ZP_05032660.1| flagellar biosynthetic protein FliR [Brevundimonas sp. BAL3]
gi|196185113|gb|EDX80089.1| flagellar biosynthetic protein FliR [Brevundimonas sp. BAL3]
Length = 261
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 118/235 (50%), Gaps = 1/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + LI R+G+ +ML+PG +Y+P ++RL A+ S+ L P + D++
Sbjct: 10 VWAGGLIFARIGAILMLIPGFGETYVPPRIRLSLALLISLALWPVVRDSLPG-LPETLGG 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ V+ E+ +G + G+L+R++ L G ++S L+ + + + + S +
Sbjct: 69 MAGWVIREVVVGLMIGMLLRMFLTSLMTAGEIVSLQTTLSFAQTANPLQAQPGSTVGSFL 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ G+ ++ D HH +V SY I + L G+ V L +F++ ++L++P
Sbjct: 129 LLFGVTLIFATDTHHLFIAGMVGSYSLIAPAKPLIMGDFTEMAVRTLGDSFLLGVQLAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L F ++FN++ GL+ +++P +YF + P + LG LS+ + F +
Sbjct: 189 VLVFALIFNLASGLIARVMPSFQVYFAAAPLSVILGLSIFALSLGALGTVFIDRY 243
>gi|157371199|ref|YP_001479188.1| flagellar biosynthesis protein FliR [Serratia proteamaculans 568]
gi|157322963|gb|ABV42060.1| flagellar biosynthetic protein FliR [Serratia proteamaculans 568]
Length = 260
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F + R+ + I P S I +V++ I++ P L + +
Sbjct: 11 VWLSQYFWPLLRILALISTAPVFSEKQISKKVKIGLGGLIVILIAPGLPVST---VPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 68 AAGLWLAAQQILIGVALGLTMQFAFAAIRLAGEVIGMQMGLSFATFFDPSGGPNTPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ ++ +L + H + LV S+ T+PI E GN F + F+ + L+
Sbjct: 128 LLNLLAMLLFLSFNGHLWLISLLVDSFHTLPIQAEPLNGNGFLALTQAGSLIFINGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G + + + + ++ H F
Sbjct: 188 LPLICLLLTLNMALGLLNRMTPQLSVFVIGFPVTMTIGIMTIGMMMPMLAPFCEHLFGEF 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|331645395|ref|ZP_08346499.1| flagellar biosynthetic protein FliR [Escherichia coli M605]
gi|331045557|gb|EGI17683.1| flagellar biosynthetic protein FliR [Escherichia coli M605]
Length = 277
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + +VR+ ++A +I++ P + + + +
Sbjct: 29 LALGLWFPFVRIMAFLRYMPVLDNSALTARVRIILSLALAIIITPLIPH--PIPHNLLSL 86
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 87 NSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 146
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 147 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 205
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + +G + + + + H
Sbjct: 206 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLLYNLPDHYLHL 260
>gi|261252334|ref|ZP_05944907.1| flagellar biosynthesis protein FliR [Vibrio orientalis CIP 102891]
gi|260935725|gb|EEX91714.1| flagellar biosynthesis protein FliR [Vibrio orientalis CIP 102891]
Length = 260
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 95/239 (39%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ +VRL +A + ++P + D ++ A
Sbjct: 11 WIANYFWPYTRIAAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPAIPAVPDTIELLSFA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G + + G ++ L + + ++ L L
Sbjct: 71 GFMTL-LEQIIIGVAMGTVTQFMIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ L D H ++ +V S+ ++PIG F L F + L +S
Sbjct: 130 FMFLSTLFFLTTDGHLKMIMLVVMSFKSLPIGTGSLTTVDFRELALWLGIMFKVALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + ++ G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYLVAGLYNHYELFWIQG 248
>gi|157692317|ref|YP_001486779.1| flagellar biosynthesis protein FliR [Bacillus pumilus SAFR-032]
gi|157681075|gb|ABV62219.1| flagellar biosynthesis protein FliR [Bacillus pumilus SAFR-032]
Length = 259
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 99/242 (40%), Gaps = 6/242 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L+ R+ + + +P L+ IP R+ F++ +++ + + L
Sbjct: 5 ELFPAFLLVFIRITAFFVTVPLLAHRTIPAVHRVGFSLFLAVISFSTIKEPPALDI---D 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y L + E +G + GL+ + +Q GS I +G + + +
Sbjct: 62 GLYMMLAVKEAMVGLLLGLIAYIMVSAVQIAGSFIDFQMGFAIANVIDPQTGAQTPLMGQ 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIML 183
+ LL + + HH + + S+ I + Q + F+I
Sbjct: 122 FFYTVTLLLMLATNAHHLLLDGIYYSFQYIAVDQYALNFGSESFAYFIAKSFNQMFIIAF 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++S+P + + ++++G++ + VPQ+ ++ + P +G+ + + + + +I ++F
Sbjct: 182 QISAPVVASLFLVDLALGIVARTVPQMNVFVVGLPIKMGVSFIMIIICMGVIFGVVQNTF 241
Query: 244 LY 245
Sbjct: 242 DT 243
>gi|284041539|ref|YP_003391879.1| flagellar biosynthetic protein FliR [Conexibacter woesei DSM 14684]
gi|283945760|gb|ADB48504.1| flagellar biosynthetic protein FliR [Conexibacter woesei DSM 14684]
Length = 266
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 101/236 (42%), Gaps = 2/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ FL++ RV ++ P + +P + R A+AF++ L P L
Sbjct: 20 VVGFFLVLARVSPLFLVAPMFNSRQVPARARTIVALAFALGLYPLAVAGQTLP--TEAFA 77
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L++ E+ +G L + V + G+++ +G S+ L +
Sbjct: 78 IVGLIVKEMLVGLAFALCVSVMFAAVDAAGTLLDFMVGFAFGGSLDPITGNQSAVLARVY 137
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + I+ + + +++ +P+ +F +I V + T F L +++P
Sbjct: 138 SLVAVAIFIAINGDAWLIQGMSRTFDIVPLSASPDFASISQGVVAVFTTIFASALAVAAP 197
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L ++ +++ GL++++VPQ+ ++ + P + +G + + S+ + S
Sbjct: 198 VLIACVLTDVAFGLVSRVVPQMNVFAVGFPVKVIVGLVVVAASLPFVGGWISDQLQ 253
>gi|260772334|ref|ZP_05881250.1| flagellar biosynthesis protein FliR [Vibrio metschnikovii CIP
69.14]
gi|260611473|gb|EEX36676.1| flagellar biosynthesis protein FliR [Vibrio metschnikovii CIP
69.14]
Length = 260
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/239 (14%), Positives = 92/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + +M++ ++ ++RL +A ++ ++P + D ++
Sbjct: 11 FIAHYFWPFTRISAMLMVMTVTGARFVSPRIRLYLGLAITLAVMPAVPAIADDLQLLSFQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GFLTT-LEQIIIGVAMGMVTQFLIQTFVILGQILGMQASLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H + +V S+ ++PIG + L F + L +S
Sbjct: 130 FMFLATMFFLATDGHLTMIQLVVLSFTSLPIGAGSLTNVDYYELSQWLGIMFKVALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLICGYIVSGLFAHYDLFWAEG 248
>gi|269792926|ref|YP_003317830.1| flagellar biosynthetic protein FliR [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100561|gb|ACZ19548.1| flagellar biosynthetic protein FliR [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 259
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/232 (21%), Positives = 104/232 (44%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L RV +M P + P+ VR+ A+ S++++P + + +
Sbjct: 9 VLAVHLLCSIRVLGLLMSSPVFMLPSWPIPVRMWLALMLSLLMVPSVDPQVPMVLLATWT 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G + GLL + LQ +G + + +GL + T + L +
Sbjct: 69 GMAIFAVREFLVGAMVGLLSGLPLYALQLSGYLEGSQMGLAMATLFDPTQEGNVALLGQV 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++G+ L + H + A+ +S+ IP+G+ + F + F++ +R S
Sbjct: 129 KYLLGIWFLLHWNGHLVLIEAINRSFSLIPLGKGVLDLPPGQPFGRWITDLFLLAIRFSL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
P + ++ ++ +G + + VPQI ++ + P IGLG + L I +V F
Sbjct: 189 PIMGALLLADVGLGFVARTVPQINVFILGIPLKIGLGLILLMAVIPFVVDLF 240
>gi|323705429|ref|ZP_08117004.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535331|gb|EGB25107.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 260
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 104/237 (43%), Gaps = 4/237 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
++ R+ +L P +P ++ A SI++ + ID N Y +
Sbjct: 14 FLIVFVRMLGIFILTPLFGTKTLPSTFKIGLAFFTSIMIFELVNVKIDANNL---YQYVE 70
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V E +G + GL + + G +I +G ++ + + + + + I+
Sbjct: 71 IVFNEFLIGLLIGLSSMISFSAIYLAGQIIDYQLGFSIVNVLAAGEETQVPLIGNFVYIL 130
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF-SSFVNMLQTTFMIMLRLSSPFL 190
LL +ID HH++F L +SY IP+G + ++ F++ R+S+P +
Sbjct: 131 TLLLFLLIDGHHKLFQLLFQSYSMIPVGTPFLHLESINTVITKIVSDMFVLGFRISAPIV 190
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I++ ++++ +PQ+ ++ I P I +G L + + + + F +
Sbjct: 191 VSTLLTDITLSIISRTIPQLNVFMIGMPIKIFVGIFTLFIMLPMYLAVIDVLFNGMY 247
>gi|261344132|ref|ZP_05971776.1| flagellar biosynthetic protein FliR [Providencia rustigianii DSM
4541]
gi|282567724|gb|EFB73259.1| flagellar biosynthetic protein FliR [Providencia rustigianii DSM
4541]
Length = 259
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 100/240 (41%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + P + + R+ A +++ P L + + A
Sbjct: 12 WLSQGFYPFIRLLALFGTAPFFNEKQSITKARIALAFFIVLIISPQLP---VVNIPLFSA 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+++ ++ +G GL +++ ++ G VI +GL+ T + L +
Sbjct: 69 MGLWVIVQQVVIGTAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+I LL D H + Y L S+ IPI + F F+ T F+ L L+
Sbjct: 129 FNLITLLLFLSFDGHLWLIYILTNSFELIPIQTTPLNRDGFWIFLQFANTIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
PF+ +++ N+++G+LN++ PQ+ ++ + P + +G L L I I+ F
Sbjct: 189 PFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYTERLIHQAF 248
>gi|170748117|ref|YP_001754377.1| flagellar biosynthesis protein FliR [Methylobacterium radiotolerans
JCM 2831]
gi|170654639|gb|ACB23694.1| putative flagellar biosynthetic protein [Methylobacterium
radiotolerans JCM 2831]
Length = 248
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 65/239 (27%), Positives = 120/239 (50%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFVNR 66
++ +F+I CRVG C+++ PGLS + + ++RL A+ ++ + P L
Sbjct: 5 TILGVFVIFCRVGGCLLVAPGLSSARVAPRIRLLVALTVTLAVAPLLLPRFGAGLRDAAP 64
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ E G G R + L+ S ++T IGL ++D+ A + S
Sbjct: 65 VDILWWIGCETLTGLAIGFFGRSFYFALETLASGVATMIGLGGIPGNPVADTEAASLAGS 124
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
LI + + ++ +D H ++F L+ SY IP G + + V+ F + LR++
Sbjct: 125 LIVMAATILVFALDLHWELFRGLIASYDRIPPGHPFGSRLMLAGLVDRTGAAFAMALRVT 184
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
SPF+ + ++ N+++GL NKL PQIP++FI+TP+++ G L ++ QF + +
Sbjct: 185 SPFIIYSVIVNLALGLANKLTPQIPVFFIATPFILFGGLAILLFLSNDLLGQFILDYEH 243
>gi|328474452|gb|EGF45257.1| flagellar biosynthesis protein FliR [Vibrio parahaemolyticus 10329]
Length = 260
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 91/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M++ ++ ++RL +A + ++P + ++
Sbjct: 11 WIANYFWPYVRISSMLMVMTVTGARFVSPRIRLYLGLAITFAVMPAIPAISQDIQLLSFR 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G G++ + G ++ L + + ++ L L
Sbjct: 71 GF-MTIAEQMIIGVAMGMVTQFMIQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ T+PIG F L F L +S
Sbjct: 130 FMFLTTMFFLATDGHLKMLQLVVFSFKTLPIGSGTLTAVDFRDMAGWLGIMFKTALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L + + + + G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYILAGLYSHYELYWALG 248
>gi|322378523|ref|ZP_08052971.1| flagellar biosynthesis protein FliR [Helicobacter suis HS1]
gi|322379824|ref|ZP_08054119.1| flagellar biosynthesis protein FliR [Helicobacter suis HS5]
gi|321147747|gb|EFX42352.1| flagellar biosynthesis protein FliR [Helicobacter suis HS5]
gi|321149037|gb|EFX43489.1| flagellar biosynthesis protein FliR [Helicobacter suis HS1]
Length = 275
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 98/247 (39%), Gaps = 3/247 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + L+ R+ I L P + IP+ +R + ++V P L
Sbjct: 25 LAYMSDQNVEGFLLLFLRLSGVIALFPFFDNNLIPVSIRGALSFFLTLVFYPTLP---HP 81
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + E FLG ++V + F IS ++GL + ++
Sbjct: 82 PLYTTAETFLIACCAEFFLGLCASFFLQVVFHAIAFATDTISFSMGLTMASAYDPISGAQ 141
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + ++ ++ +L + HH + + S IP+G + +I + + L FM
Sbjct: 142 KAIVGQVVLLLAILIMLQTSMHHLIILWVQHSLEKIPLGGFVFTSHIAQASMQALGHLFM 201
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ ++ P L + +I G++ K PQ + I P I + L L L + I+++F
Sbjct: 202 VGFSMAFPILAIIMFGDIVFGMIMKTHPQFNLLAIGFPLKIAIALLGLILIMASIMHRFK 261
Query: 241 HSFLYGF 247
L F
Sbjct: 262 EQLLQAF 268
>gi|15596645|ref|NP_250139.1| flagellar biosynthesis protein FliR [Pseudomonas aeruginosa PAO1]
gi|9947399|gb|AAG04837.1|AE004574_8 flagellar biosynthetic protein FliR [Pseudomonas aeruginosa PAO1]
Length = 258
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 108/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S L + RV + +M +P + +P++VRL A+ +VL+P L + +
Sbjct: 11 GWIASFVLPLFRVAALLMTMPVIGTQLVPVRVRLYLALGVCVVLVPNLPSMPQVDALSMK 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L+ ++ +G + G +++ G +IS +GL + + ++ ++ L
Sbjct: 71 AML--LIGEQILVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANGVSVPVLGQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L ++ H VF + +S+ T+P+G+ L GN F L L L+
Sbjct: 129 FFTMLVTLLFLAMNGHLVVFEVIAESFVTLPVGEGL-SGNHFWIIAGKLGWVMGAALLLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ G + + PQ+ I+ I P + LG + L + ++ Q+
Sbjct: 188 LPAITALLVVNLAFGAMTRAAPQLNIFSIGFPLTLVLGLVILWIGTADLLSQYQVLAGEA 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|146309438|ref|YP_001189903.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina ymp]
gi|145577639|gb|ABP87171.1| flagellar biosynthetic protein FliR [Pseudomonas mendocina ymp]
Length = 264
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 104/237 (43%), Gaps = 4/237 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + CR+ + + + P + + ++VR+ A+A ++ L L D + +
Sbjct: 13 TSLQAYWWPFCRILALLSMAPLFNHKAVSVRVRILLALALTVALGAALPDMPPIDPLSLQ 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS-LAETPLN 125
+ L ++ G + GL +++ G V+ST +G+++ + + + +
Sbjct: 73 GLMTAL--EQIAFGVLLGLTLQLVFTIFMLVGEVVSTQMGMSMARYNDPVNGVSSSSIVY 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L I+ +L + ID H L +S+ P+G L++ SFV + +
Sbjct: 131 QLYFILLVLLFFAIDGHLVTVSVLYQSFLFWPVGSGLHY-LGAQSFVQAFAWVLAAAVLV 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P +F + GLLN++ P + ++ + P I +G L + L++ + + H
Sbjct: 190 TLPIVFCLTLVQFCFGLLNRISPAMNLFSLGFPISILMGLLCIYLTLPNLPDSYLHL 246
>gi|296133031|ref|YP_003640278.1| flagellar biosynthetic protein FliR [Thermincola sp. JR]
gi|296031609|gb|ADG82377.1| flagellar biosynthetic protein FliR [Thermincola potens JR]
Length = 259
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 98/236 (41%), Gaps = 1/236 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
+++ RV +++ P S +P QV+ + SI++ + +
Sbjct: 14 FLVVMARVSGVLLVAPVFSSRNLPAQVKAGLIVLISIIVF-MAKHPQMATVPTSIIPFVL 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ EL +G + G + + G I IG + + ++ + + +I
Sbjct: 73 LLISELVIGLIIGFASYLIFSVIYIAGQEIDMHIGFAMVNVVDPLSGISVPLVGTFKYMI 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L + ++ +F AL SY IP+ I + + M + ++L+ P +
Sbjct: 133 AILVYLTTNSYNYLFAALFHSYDVIPLLGFQPNKAISTYLIGMFGNVLALSVKLAVPIVG 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+V +++G++ + VPQ+ ++ + P I +G + L L + ++ F +
Sbjct: 193 ALLVAEVALGIIARTVPQMNVFLVGIPAKIVIGIILLVLILPFYMFFLDMLFETNY 248
>gi|225181593|ref|ZP_03735034.1| flagellar biosynthetic protein FliR [Dethiobacter alkaliphilus AHT
1]
gi|225167701|gb|EEG76511.1| flagellar biosynthetic protein FliR [Dethiobacter alkaliphilus AHT
1]
Length = 253
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 97/235 (41%), Gaps = 1/235 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LFLI R+ + I +LP + IP ++ FA F+ ++ + + + YY
Sbjct: 9 LFLIFVRLSALIAVLPFFTWRGIPALPKIGFAGVFAYLIF-LASSPQEFEIPEHFYYYVL 67
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
V E+ G G L+ + + G ++ GL + + T +
Sbjct: 68 AVGSEVLFGLALGFLVLLIFAAARIAGQMVDVQAGLMMASVFDPQFGSQVTLFGQFYYLF 127
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L+ ++ HH +F A+ +S + G + + + + + F+I +L+ P +
Sbjct: 128 ALVFYLTVNGHHMLFMAIARSIELVTPGGVVFSPQLIPNVMQFIFQMFIIAFQLAVPVVA 187
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
I ++++GLL+K VPQ+ ++ + P +G+ + L + F
Sbjct: 188 VLIFSDLALGLLSKTVPQLHVFMVGMPLKVGVALFIIYLIFPYLAQVLETVFARM 242
>gi|217976248|ref|YP_002360395.1| type III secretion system inner membrane R protein [Methylocella
silvestris BL2]
gi|217501624|gb|ACK49033.1| type III secretion system inner membrane R protein [Methylocella
silvestris BL2]
Length = 249
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 124/236 (52%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFVNRA 67
+++ F++ CR+G+C+M++PG+S + IP++VRL A ++ L P L D + + +
Sbjct: 7 VLTAFVLFCRIGACLMIMPGISSARIPVRVRLFVGFAITLGLTPILSDEVGPKISAESPF 66
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E +G + G L R++ L + I+ AIGL+ + D+ + SL
Sbjct: 67 ILVQTILSESLIGGLIGFLGRIFFGALDALANAIAMAIGLSSPLAPPTDDNEPAPAIVSL 126
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + L+ ++ + H +V L+ SY P+ N L +F + LR+SS
Sbjct: 127 ISLGALVLFFLTNLHWEVLRGLLASYSVWPVSGLFEARLGLVEIGNSLARSFALALRVSS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
PF+ + ++ N++IG+ ++ PQIPIYFI+ P + G L ++ ++ F F
Sbjct: 187 PFIVYALIVNLAIGIASRFAPQIPIYFITVPAVAAGGLFLLYITCRSLLELFVAGF 242
>gi|268589972|ref|ZP_06124193.1| flagellar biosynthetic protein FliR [Providencia rettgeri DSM 1131]
gi|291314689|gb|EFE55142.1| flagellar biosynthetic protein FliR [Providencia rettgeri DSM 1131]
Length = 259
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + + P + +VR+ A +++ P L + + A
Sbjct: 12 WLSQGFYPFIRLLALLGTAPFFNEKQAITKVRVALAFFVVLIVSPQLP---VVNIPLFSA 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+++ ++ +G GL +++ ++ G VI +GL+ T + L +
Sbjct: 69 MGLWVIVQQMVIGVAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+I LL D H + Y +V S+ IPI + F FV T F+ L L+
Sbjct: 129 FNVITLLLFLAFDGHLWLIYIVVNSFELIPIQTAPLNRDGFWVFVQFANTIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
PF+ +++ N+++G+LN++ PQ+ ++ + P + +G L L I I+ F
Sbjct: 189 PFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYTERLVHQAF 248
>gi|34498579|ref|NP_902794.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC
12472]
gi|34104433|gb|AAQ60791.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC
12472]
Length = 252
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 91/241 (37%), Gaps = 9/241 (3%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ R+ + P + +P + + FA+ +++ +
Sbjct: 11 AWVSVFAWPFARIVGLFLAEPVFAYRGVPRRFKAAFALVLTVI--------LAPLLPPLP 62
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A +++ +L +G G ++R+ ++ TG +I GL + L+
Sbjct: 63 AEGIAILVQQLLIGLSMGFVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAAQVPVLSQ 122
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ + D HH V AL S+ +PIG + F + L+
Sbjct: 123 MLSLFTFFLFLAFDGHHVVLGALAHSFQVLPIG-MPMPAQGIKALTLWGAHLFEWGVWLA 181
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N++IG++ + PQ I+ P I +G L L++ +++ + G
Sbjct: 182 MPIIGALLITNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVIERMYQAG 241
Query: 247 F 247
F
Sbjct: 242 F 242
>gi|163789633|ref|ZP_02184071.1| flagellar biosynthetic protein fliR/B [Carnobacterium sp. AT7]
gi|159875165|gb|EDP69231.1| flagellar biosynthetic protein fliR/B [Carnobacterium sp. AT7]
Length = 250
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 101/232 (43%), Gaps = 3/232 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ ++ LI RV S I++ PG S +P ++ +M ++ + +
Sbjct: 5 LQTIILIFIRVTSFIVVSPGFSFKGLPSVAKIALSMGITLAAYSAVPVM---EQEAGTVL 61
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ LV+ E+ LG G + +++ ++ G+ + +G ++ S + + +
Sbjct: 62 FAVLVIKEVLLGIALGFITKLFFTAVEIAGNFVDFQVGFSMGAVYDPSMGINVSYYGKIY 121
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + ++ + HH V +LVKS+ T+PI + +L F I ++ P
Sbjct: 122 YWLSMCVFYLTNLHHVVIKSLVKSFTTVPISNSNLGDFGVEGMMKLLGIIFEIAFNIAVP 181
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ ++ + +GL+++ VPQI + + P I + + + + +V
Sbjct: 182 MMIVALLTEVILGLISRSVPQINVLILGMPLKIVASFVMILVLLPTLVKNIQ 233
>gi|268316330|ref|YP_003290049.1| flagellar biosynthetic protein FliR [Rhodothermus marinus DSM 4252]
gi|262333864|gb|ACY47661.1| flagellar biosynthetic protein FliR [Rhodothermus marinus DSM 4252]
Length = 258
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 104/245 (42%), Gaps = 2/245 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + ++ + L+ R+ ++ P IP++VR+ A+ + L + +
Sbjct: 1 MPLLNPEYLLRVLLVFVRISGVLLAAPFFGQLSIPVRVRVLLAVLLAYSLSGLVAGPLP- 59
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + V +E G + G + ++ G +I IGL++ + A
Sbjct: 60 PHADQALGFIVAVALEALTGLLLGFAAHMIFWAVEMAGDLIGFQIGLHMAQVFNPLEGHA 119
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
PL L+ + L+ ++D HH V ALV+S+ +P+ N V + +
Sbjct: 120 ANPLGRLLSLAALMIFVLLDGHHVVLRALVESFRVVPLAGA-NLAASQPLLVQWVWDFLV 178
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ LRL++PF+ ++ ++++G+ ++VPQ ++ I+ P + +G + +
Sbjct: 179 LALRLAAPFMVTILLIDVALGIFARVVPQADLFSIALPLKLLVGLALALFYMRAFFPLMA 238
Query: 241 HSFLY 245
Sbjct: 239 TLISN 243
>gi|118474587|ref|YP_892577.1| flagellar biosynthesis protein FliR [Campylobacter fetus subsp.
fetus 82-40]
gi|118413813|gb|ABK82233.1| flagellar biosynthetic protein FliR [Campylobacter fetus subsp.
fetus 82-40]
Length = 257
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +++ FL++ R G+ ++ P + IP+ ++ + F+I L P + L+N
Sbjct: 9 QNNVVTFFLLLVRTGALMVFFPFFNHMQIPVIIKAVLSFMFAIFLFPLAHAPVGLENLSV 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
Y EL G G+L+ + LQ G IS +G ++ + + + ++
Sbjct: 69 E-YLILETFSELMFGMCAGVLLMLVFGALQLAGGQISMIMGFSMASVIDPQSGVNMPLIS 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ I LLA + D HH V + S IP+G NI + F+ +
Sbjct: 128 NMLNFIVLLAFLLFDGHHIVLQFIAYSLQFIPLGGFYPDENIVKYTAKGVINLFLFGFII 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P L ++ ++ G+L K +PQ + + P I + + + I +V F+ +
Sbjct: 188 SFPILALSLLADLIFGMLMKTMPQFNLLVVGFPIKIAIAFVVIMAIISAMVKLFTSLMMQ 247
Query: 246 GF 247
Sbjct: 248 VL 249
>gi|119476305|ref|ZP_01616656.1| Flagellar biosynthesis pathway, component FliR [marine gamma
proteobacterium HTCC2143]
gi|119450169|gb|EAW31404.1| Flagellar biosynthesis pathway, component FliR [marine gamma
proteobacterium HTCC2143]
Length = 258
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 95/241 (39%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S R+G+ + P +P +VR+ A ++ + P L +
Sbjct: 11 GWLGSAMWPFFRIGAFFLAAPIFGTQLVPARVRIVLAFLMTLAIAPNLPPMPVVDAVSVS 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L ++ +G G ++++ G +I+ +GL + + ++ + T L+
Sbjct: 71 A--FVLTAQQILIGVAMGFSMQIFLQIFVVGGQIIAMHMGLGFASMVDPANGVTVTVLSQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L ++ H + L S+ T+P+G F L L+
Sbjct: 129 FHLMLITLLFVSMNGHLAMIEVLAASFYTLPVGFAFISKTALLDLAGHAGWMFTSALLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+S+G++ + PQ+ I+ I P ++ LG + +++ + F
Sbjct: 189 LPAVAALMIVNMSLGVVTRAAPQLNIFSIGFPSMLLLGLCIVWVTMIGYLPLFDRFTREA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|88858096|ref|ZP_01132738.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
gi|88819713|gb|EAR29526.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
Length = 259
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 96/241 (39%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M L + R+ + +M++ G+ + +P +++ A+ ++V++P L +
Sbjct: 10 QWMADFLLPLTRISAMLMVMVGIGVRTVPTRIKAALAVMVTLVVIPVLPP--AEFTNLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+V+ + +G G + G +++ GL T + ++ +
Sbjct: 68 FEMVLVVLQQTLIGVAMGFASVLMLNTFVMAGQLLAMQSGLGFATMIDPTNGQNVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L W D H + LV S+ TIPI F F L LS
Sbjct: 128 FYLILATLLFWTYDGHLIMVKMLVLSFTTIPIDGNWWHVANFREVAVWGGWLFATALVLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
L ++ +IS G++ + PQ+ I+ I P+ + +G + + ++ V QF +
Sbjct: 188 LAPLTAMLITSISFGVMTRAAPQLNIFSIGFPFTLMMGLIIIWATMGNFVVQFDFQWHKM 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|307731354|ref|YP_003908578.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1003]
gi|307585889|gb|ADN59287.1| flagellar biosynthetic protein FliR [Burkholderia sp. CCGE1003]
Length = 260
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 108/240 (45%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ + + P L +P++V++ A +I++ P L + F
Sbjct: 11 AWLTAFLWPFVRILALVATAPVLGNRSLPLRVKIGLAAFVTIIVAPTLGALPQVTVFSAE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ + +G G+ +++ + TG + +GL T S + L+S
Sbjct: 71 GVWI--IVNQFLIGVALGMTMQIVFQAISATGDFVGLGMGLGFATFFNAQASSSSQVLSS 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I +L VID H Q+ AL+ S+ ++P+ + + + T F L LS
Sbjct: 129 YMYTIAMLVFLVIDGHLQMISALLASFSSLPVSANILGAPGWRTLAGFGSTIFSAGLLLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++G+LN+ PQI ++ I P + +G L L L I ++ F+ F G
Sbjct: 189 LPVVAALLITNLALGILNRAAPQIGVFQIGFPLTMLIGLLLLQLMIPNMIPFFARLFTVG 248
>gi|254457578|ref|ZP_05071006.1| flagellar biosynthetic protein FliR [Campylobacterales bacterium GD
1]
gi|207086370|gb|EDZ63654.1| flagellar biosynthetic protein FliR [Campylobacterales bacterium GD
1]
Length = 255
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 3/243 (1%)
Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ ++ L+ R + M P S IPM ++ A F+IV + LQ +
Sbjct: 9 SDTYIVGFILLFFRFAALFMAAPIFSHKNIPMTIKTSMAFFFTIVFYSSMP---PLQIDI 65
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
N ++ EL G G+++ + + F G IS +G ++ +++ ++ +
Sbjct: 66 NVPTVVLAILSELLFGLAIGVVLLLAYNVITFAGGQISFMMGFSMASAIDPQTGVSMPII 125
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
+ + ++GL+ L ID HH + + S IP+G L ++F+ + F++
Sbjct: 126 SQFLSLMGLMILLAIDLHHWLLLFIDGSLSAIPLGGFLLTEDLFNYMIKATSNMFIVGFM 185
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ P + + ++ G+L K +PQ + I P I + + L + + L
Sbjct: 186 IAFPIIALSWLADVIFGMLMKTMPQFNLLVIGFPIKIMVAFMVLIATFSATMLILKSQML 245
Query: 245 YGF 247
F
Sbjct: 246 EAF 248
>gi|56551545|ref|YP_162384.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56543119|gb|AAV89273.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 265
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + + + R G+ + P L + P+ VR+ A+A + + + V+
Sbjct: 10 ENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMDAHLILPDSGLVS 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
LV+ E+ G G +++ T +I A+GL + + + L
Sbjct: 70 FTGL-FLVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLT 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I+G D H + +V+SY T+P+G +F F I + +
Sbjct: 129 QIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLI 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F I+ + +G L++ P + ++ + P + +G L + +S+ I +
Sbjct: 189 ALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPMALIIGILLIAISVPAISEGVIDAIRS 248
Query: 246 GF 247
G
Sbjct: 249 GL 250
>gi|171057715|ref|YP_001790064.1| flagellar biosynthetic protein FliR [Leptothrix cholodnii SP-6]
gi|170775160|gb|ACB33299.1| flagellar biosynthetic protein FliR [Leptothrix cholodnii SP-6]
Length = 253
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 90/241 (37%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L R + P LSM +P+++++ A+ ++ L L
Sbjct: 11 EWLTPLLWPFLRTLALFSAAPVLSMRIVPVRLKVGLALLVAVSAQASLPPMPSLPLDSPG 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ +G G RV ++F G +I +GLN + T
Sbjct: 71 A--LMMGAQQVVIGVTLGFSARVVFAAVEFAGELIGLQMGLNFAGFFDPATGSQGTATAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
IG L V++ H + A+V S+ P+ + F + L ++
Sbjct: 129 FFSTIGSLLFVVMNGHLLLVMAVVHSFNAFPVSDQPLSVITTLQPQVWGAEIFRLGLWIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+ +G+++++ QI I+ + + +G + L++ ++ +
Sbjct: 189 LPIIAMLLFVNLVLGVISRVAQQIQIFSVGFGITVSVGLFGVLLTLPMLQGPLMAALERM 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|333004055|gb|EGK23589.1| flagellar biosynthetic protein FliR [Shigella flexneri K-272]
gi|333017828|gb|EGK37135.1| flagellar biosynthetic protein FliR [Shigella flexneri K-227]
Length = 261
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|302670738|ref|YP_003830698.1| flagellar biosynthetic protein FliR [Butyrivibrio proteoclasticus
B316]
gi|302395211|gb|ADL34116.1| flagellar biosynthetic protein FliR [Butyrivibrio proteoclasticus
B316]
Length = 261
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 107/239 (44%), Gaps = 3/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI RV S I + P P V++ F + SI+L + + ++
Sbjct: 11 LEIFLLIFVRVASFIFIAPFFGGRQTPNLVKIGFGLLLSIMLYGAVP--FEAPSYNTIIG 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y+ +V+ E+ G + G +++ L F G+++ +GL++ + + T SL
Sbjct: 69 YTVIVLKEVLAGFLIGYAVQLCELISAFAGTIVDMQVGLSMVNIFDPNTNEQVTITGSLY 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + L + + + AL ++ IPI G +N + +S + L+ +I R+
Sbjct: 129 SQVLTMMLILTGMYQYILKALADTFYLIPINGAVINADRLLASIMEFLRDYIVIGFRICL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + N+ +G+L K+ PQ+ ++ + I +G L + +++ ++ + F+
Sbjct: 189 PIFIITFITNVILGVLAKVSPQMNMFAVGIQIKIIIGLLIMFITVTMLNDASNFVFINM 247
>gi|260752856|ref|YP_003225749.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258552219|gb|ACV75165.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 265
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + + + R G+ + P L + P+ VR+ A+A + + + V+
Sbjct: 10 ENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMHAHLILPDSGLVS 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
LV+ E+ G G +++ T +I A+GL + + + L
Sbjct: 70 FTGL-FLVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLT 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I+G D H + +V+SY T+P+G +F F I + +
Sbjct: 129 QIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLI 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F I+ + +G L++ P + ++ + P + +G L + +S+ I +
Sbjct: 189 ALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPMALIIGILLIAISVPAISEGVIDAIRS 248
Query: 246 GF 247
G
Sbjct: 249 GL 250
>gi|229544410|ref|ZP_04433468.1| flagellar biosynthetic protein FliR [Bacillus coagulans 36D1]
gi|229324895|gb|EEN90572.1| flagellar biosynthetic protein FliR [Bacillus coagulans 36D1]
Length = 259
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 7/242 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
L+ RV + +++P S +P + R+ S+++ TI + F
Sbjct: 8 FSIFLLVFIRVTTFFIMMPLFSHRSVPARFRIGLGFFLSVLVT----YTIHAKPFTMDGA 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y L++ E +G + G + +Q G+ I G ++ + +
Sbjct: 64 YFMLMIKEALVGLLLGFVAYFILSAVQLAGTFIDFQAGFSMANVIDPQSGAQTPLTGEYL 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIMLRL 185
LL L ++ HH + + SY IP+ Q N+ +L F++ ++
Sbjct: 124 YTFALLLLLSLNGHHLLLDGIYYSYSFIPLDQAWVHLGSFNLAKYLATLLARVFLVAFQM 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+P + + +I++G++ + VPQ+ I+ + P I + + L +++ I H F +
Sbjct: 184 SAPVVAVLFLTDIALGIIARTVPQLNIFVVGFPVKIAVSLIALAVAMGTIYIAVEHLFEW 243
Query: 246 GF 247
F
Sbjct: 244 MF 245
>gi|152965634|ref|YP_001361418.1| flagellar biosynthetic protein FliR [Kineococcus radiotolerans
SRS30216]
gi|151360151|gb|ABS03154.1| flagellar biosynthetic protein FliR [Kineococcus radiotolerans
SRS30216]
Length = 274
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 85/227 (37%), Gaps = 3/227 (1%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75
R + +ML P + + QV+ ++ + + L D++ V+
Sbjct: 19 SVRSAAFLMLAPPFANKAVNGQVKALLSVGLGLAVAERLRDSVPAVEP---GALITAVVQ 75
Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135
+ +G V G + + +Q G ++ G + ++ L
Sbjct: 76 QAVVGAVMGAFVALVFAAVQAAGDMLDLFGGFQMASAYDPLMQSQTAVFGKLYTWTSTAL 135
Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195
L V H + ++SY +P+ L+ G + F + + +++++P + +
Sbjct: 136 LVVSGGHLLILQGFLRSYDVLPLDAGLDTGTVARVFTEGVAQLVISAVQIAAPLIAVLFL 195
Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+I +GLL+++ P + ++ +S P I + + ++
Sbjct: 196 TDIGLGLLSRVAPALNVFAMSFPVKILITLTLAGFAFSMLPGVVDDM 242
>gi|283784008|ref|YP_003363873.1| flagellar biosynthetic protein [Citrobacter rodentium ICC168]
gi|282947462|emb|CBG87009.1| flagellar biosynthetic protein [Citrobacter rodentium ICC168]
Length = 260
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 100/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ L+ R+ + I +P + + ++VR+ ++A +IV+ P + + +
Sbjct: 12 LVLGLWFPFVRIMAFIRYVPVFDNAALTIRVRIILSLALAIVITPMIPHPVPDSLLSMNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L ++ G + GL+ + L LQ G ++S +G+++ + T L L
Sbjct: 72 --LILTAEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPGSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + ++ + +D H + L K + PIG L+ ++ + + L+
Sbjct: 130 INVYAVILFFAMDGHLLLVSVLYKGFTYWPIGNALHPQSL-RTLALAFSWVLGSAMLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + +Y + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRVAPPLNLYSLGFPINMLAGLICFATLLYNLPDHYLHL 243
>gi|310764876|gb|ADP09826.1| Flagellar biosynthetic protein FliR [Erwinia sp. Ejp617]
Length = 259
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 97/239 (40%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ FL++ R+ + + + P S + +VR+ A+ + ++ + D+ +
Sbjct: 14 LGHYFLVMVRIAALLTVAPVFSEKSVNTRVRVGLALLIAALIGGNIPDS---HIALYSFQ 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
V +L +G GL +++ + ++ G +I +GL+ T S + +
Sbjct: 71 GVWAVGKQLLIGAALGLSMQLLFVAVRMAGEIIGMQMGLSFATFFDPSAG-NVPVIARFL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L V + H + L +S+ +P+ F V F L L P
Sbjct: 130 NLLVTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGFFLLVQQAGLVFREGLMLGLP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N ++GLLN+L PQ+ I+ I P + +G + L L + + F
Sbjct: 190 IISLLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSLISQTLAPFIEKLMATVF 248
>gi|259907618|ref|YP_002647974.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae Ep1/96]
gi|224963240|emb|CAX54724.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae Ep1/96]
gi|283477460|emb|CAY73376.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae DSM 12163]
Length = 259
Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 96/239 (40%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ FL++ R+ + + + P S + +VR+ A+ + ++ + D+ +
Sbjct: 14 LGHYFLVMVRIAALLTVAPVFSEKSVNTRVRVGLALLIAALIGGNIPDS---HIALYSFQ 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
V +L +G GL +++ + ++ G +I +GL+ T S + +
Sbjct: 71 GVWAVGKQLLIGAALGLSMQLLFVAVRMAGEIIGMQMGLSFATFFDPSAG-NVPVIARFL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L V + H + L +S+ +P+ V F L L P
Sbjct: 130 NLLVTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGLFLLVQQAGLVFREGLMLGLP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N ++GLLN+L PQ+ I+ I P + +G + L L + + F
Sbjct: 190 IISLLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSLISQTLAPFIEKLMATVF 248
>gi|295111380|emb|CBL28130.1| Flagellar biosynthesis pathway, component FliR [Synergistetes
bacterium SGP1]
Length = 264
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 1/229 (0%)
Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW-DTIDLQNFVNRAYYSKLVMVE 76
R + P + P VR FA + L + L F + + L + E
Sbjct: 20 RFVGLVFSAPVFTSVMAPTPVRYLFAALLTFSAAGGLGGAEVPLFYFDSVFSIALLGVRE 79
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ +G G L + + L+ G + T IG ++ + + + + L ++GL
Sbjct: 80 VLIGVALGFLSALPLVALRVAGEQVGTVIGFSMAQVLDPTTQTESSIIGQLEFLVGLWFY 139
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
+ + H + A+++S P+G+ L F LQ F++ +R++ PF ++
Sbjct: 140 YHWNGHLLMIQAVMESVRLAPVGRLLPFPPDLIEVGTWLQDLFILAMRITLPFFCSLVLA 199
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ +G L + VPQ+ I+ + P + LG + L + + V F
Sbjct: 200 DVGLGFLARTVPQMNIFVLGLPIKVALGFMVLAAVLPLTVDLIYTQFER 248
>gi|258622508|ref|ZP_05717530.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM573]
gi|258585208|gb|EEW09935.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM573]
Length = 258
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 101/237 (42%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
I+ L+ RVG+ + +P + IP+ VR A+A ++ P + + F
Sbjct: 9 SAILGQLWWPFFRVGAVFISMPFFGDALIPIWVRSLLALAIVVITAPLIPTMPAVDLFSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L ++ G + GL++ + G ++S +GL + + ++ L
Sbjct: 69 TSLF--LAFEQVIWGIIFGLILHMLFTVFAMLGQIVSLQMGLGMAMMNDPVNGISVAVLG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L I L ++ H V L++S+ P+G + +N F L L
Sbjct: 127 RLFLIFSTLLFLALEGHLLVIDVLIQSFVIWPVGSGI-TSLSLQGVINAFGWMFASSLAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + IY + P + LG + +S+ I +++
Sbjct: 186 ALPAIISMLLANISFGVMNRAAPSLNIYALGFPMTMLLGLFSVLISVSGIPDRYTDL 242
>gi|258624669|ref|ZP_05719604.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM603]
gi|262173374|ref|ZP_06041051.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451]
gi|258583061|gb|EEW07875.1| flagellar biosynthetic protein FliR [Vibrio mimicus VM603]
gi|261890732|gb|EEY36719.1| flagellar biosynthesis protein FliR [Vibrio mimicus MB-451]
Length = 258
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 101/237 (42%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
I+ L+ RVG+ + +P + IP+ VR A+A ++ P + + F
Sbjct: 9 SAILGQLWWPFFRVGAVFISMPFFGDALIPIWVRSLLALAIVVITAPLIPTMPAVDLFSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L ++ G + GL++ + G ++S +GL + + ++ L
Sbjct: 69 TSLF--LAFEQVIWGIIFGLILHMLFTVFAMLGQIVSLQMGLGMAMMNDPVNGISVAVLG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L I L ++ H V L++S+ P+G + +N F L L
Sbjct: 127 RLFLIFSTLLFLALEGHLLVIDVLIQSFVIWPVGSGI-TSLSLQGVINAFGWMFASSLAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + IY + P + LG + +S+ I +++
Sbjct: 186 ALPAIISMLLANISFGVMNRAAPSLNIYALGFPMTMLLGLFSVLISVSGIPDRYTDL 242
>gi|121602553|ref|YP_989418.1| flagellar biosynthesis protein FliR [Bartonella bacilliformis
KC583]
gi|120614730|gb|ABM45331.1| flagellar biosynthetic protein FliR [Bartonella bacilliformis
KC583]
Length = 265
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 73/240 (30%), Positives = 133/240 (55%), Gaps = 1/240 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DL 60
++ +++ L+ RVG+C+ML+PG+S IP+QVRL A++FS+++LP + D D
Sbjct: 15 SVPLNQLVLLAMLVFARVGACLMLMPGVSSIRIPVQVRLFIAVSFSLIILPMVADFFKDF 74
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ A + + + E+ +G G++ VY LQF ++I+ ++G + Q + DS
Sbjct: 75 GEKPDFALFVRALCSEMLIGVTFGVIAHVYLWALQFMATIIAMSMGYSGQPGHNVIDSTP 134
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET + L+ ++G++ + D H L+ SY + N + + L F+
Sbjct: 135 ETQIAHLLVLVGVMLFFASDLHMFAIRGLLASYDVVSPVFIPNPEAALIDYRDALSKAFL 194
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
LR+++PF+ + ++ NI++GL+NKL P IP+YFIS P+++ G L + I+ FS
Sbjct: 195 TTLRIAAPFIVYAVLVNIAVGLVNKLTPNIPVYFISLPFVVAGGLFLLYFIMPEILNFFS 254
>gi|254517019|ref|ZP_05129077.1| flagellar biosynthetic protein FliR [gamma proteobacterium NOR5-3]
gi|219674524|gb|EED30892.1| flagellar biosynthetic protein FliR [gamma proteobacterium NOR5-3]
Length = 256
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 111/241 (46%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + R+ + ++ P S S I ++VR+ A+ S ++ P L T ++
Sbjct: 10 VLFHTYLWPFLRLSAMLLAAPIFSYSSISVRVRVLLAVLVSALVAPLLPVTPVVEPLS-- 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L + E+ +G V G ++++ + G ++ ++GL ++ + + ++
Sbjct: 68 ALGLVLALREVAIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMAVDPQNGVQVPVVSQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L ++ L ID H + A+V+S+ IP+G + +FS+ + F L L+
Sbjct: 128 LNVVLATLLFLAIDGHLMLITAVVESFELIPVGSAFSPEGMFSNVAALGTQLFASALLLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ N++ G++ + PQ+ I+ + P I G +F+ L++ + + G
Sbjct: 188 LPALTAILMINVAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLALPMFISTLQRFLSLG 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|315932323|gb|EFV11266.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 327]
Length = 255
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++
Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSAIVLFLTMYLYPLAR----LESLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + S + + ++
Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L+ D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246
>gi|163794130|ref|ZP_02188103.1| flagellar biosynthetic protein FliR [alpha proteobacterium BAL199]
gi|159180744|gb|EDP65263.1| flagellar biosynthetic protein FliR [alpha proteobacterium BAL199]
Length = 255
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 1/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + L+ R + ++LLPG+ +IP++VRL FA+A ++ + P + + + A
Sbjct: 11 IFQIMLVFARTSAVLLLLPGIGEVFIPVRVRLLFAVALALAVAPVIAPQLP-PEPTSAAG 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
LV+ E+ +G GL+ R+ L L G VIS + GL T S S + + ++
Sbjct: 70 LLTLVVGEVLIGLYFGLVARILWLTLDTAGRVISFSTGLASATVFNPSLSEQGSAIGLVL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++G++ L++ D HH V A+V+SY G EL G+ + ++ +F + ++LS+P
Sbjct: 130 TLLGIMMLFIADLHHMVIRAVVESYAVFRPGGELMIGDFSEAITELVSGSFKVAVQLSAP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
F F ++F +++G+L +L+PQ+ I+FI P I LG + ++ F +
Sbjct: 190 FFVFGLLFFVTLGVLARLMPQLQIFFIGLPAQIYLGLFVWVTILGALMSAFLTYYADT 247
>gi|114320140|ref|YP_741823.1| flagellar biosynthetic protein FliR [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226534|gb|ABI56333.1| flagellar biosynthetic protein FliR [Alkalilimnicola ehrlichii
MLHE-1]
Length = 260
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 93/215 (43%), Gaps = 2/215 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + RVG+ +M+ P +P++VR+ F +A ++ +LP + + +
Sbjct: 10 AWVGSLMWPLMRVGAMVMVAPVFGNQLMPVRVRVFFGLALAVAVLPAVGEVPPVDPLSAE 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ +G + G ++ + + G ++ A+GL T + ++ L+
Sbjct: 70 GLLISV--QQVLIGLIMGFMLLLAVNAVVVAGESMALAMGLGFATMVDPQTGMSVPVLSQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ +I L I H + S+ +PI E F F + ++
Sbjct: 128 VMLVIVTLVFLGIGGHLMLIELTAASFSALPIAAEGVGREAFFEVAAWASQMFAGAVLIA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221
P + ++ N+++G++ + PQ+ ++ + P +
Sbjct: 188 LPVVTVLLIINLALGVMTRAAPQMNVFSVGLPITM 222
>gi|27380921|ref|NP_772450.1| flagellar biosynthesis protein FliR [Bradyrhizobium japonicum USDA
110]
gi|27354087|dbj|BAC51075.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
Length = 256
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 1/238 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L+ RVG+ +MLLPGL + IP +V+L A+ ++++LP + +
Sbjct: 10 ALAAAFMLVFARVGAMVMLLPGLGETNIPTRVKLSIALLLTLIILPLHRSAYHVD-MGSL 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L++ E+ +G V G RV LQ GSVI+ +GL TS+ + + +
Sbjct: 69 APLLVLMLHEIAIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTSVDPTQGQQGVLVGN 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++G+ L+ D HH V AL SY G+ ++ G++ S F + L+LS
Sbjct: 129 FLTMLGVTLLFATDSHHLVIAALNDSYAIFSPGETVSSGDVASLATRAFAAAFRLGLQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
PFL F +VFNI +G+L +L+PQ+ +YF+ P I G L L + + ++ F F+
Sbjct: 189 GPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFAGFLVLAVVLTAMMGTFLDYFI 246
>gi|292489150|ref|YP_003532037.1| flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430]
gi|292900268|ref|YP_003539637.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291200116|emb|CBJ47242.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291554584|emb|CBA22215.1| Flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430]
gi|312173308|emb|CBX81563.1| Flagellar biosynthetic protein FliR [Erwinia amylovora ATCC
BAA-2158]
Length = 259
Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 98/239 (41%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ FL++ R+ + + + P S + +VR+ A+ +++L + D+ +
Sbjct: 14 LGHYFLVMVRIAALLTVAPVFSEKGVNTRVRVGLALLIAVLLGGNIPDS---HIALYSFQ 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
V +L +G GL +++ + ++ G ++ +GL+ T + + +
Sbjct: 71 GVWAVGKQLLIGAALGLSMQLLFVAVRMAGEIVGMQMGLSFATFFDPNAG-NVPVIARFL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L V + H + L +S+ +P+ F V F L L P
Sbjct: 130 NLLVTLLFLVFNGHLWLIALLAESFHQLPVDAAPLHNGGFFLLVQQAGLVFREGLMLGLP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N ++GLLN+L PQ+ I+ I P + +G + L L + + F
Sbjct: 190 IISLLLCINFTLGLLNRLTPQLSIFVIGFPLTLTVGMVALSLISQTLAPFIEKLMATVF 248
>gi|329298605|ref|ZP_08255941.1| flagellar biosynthesis protein FliR [Plautia stali symbiont]
Length = 262
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 109/241 (45%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + P L+ IP +V++ A+ + +L+P L ++ +
Sbjct: 11 HWVAQFFWPMVRLLALFASAPLLNERSIPKRVKIGLAVVTTWILMPLLP---PVEVTLFT 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+++ +L +G GL +++ ++ G +I +GL+ T + + + L
Sbjct: 68 PAGFWMLVQQLLIGVGIGLTMQLAFSAMRLVGEMIGLQMGLSFATLLDPNSRINMPLLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L + H + LV S+ T+PI + N F + F+ + L+
Sbjct: 128 FLDMLAMLLFLTFNGHLWLISLLVDSFHTLPINDQPLNANAFMALTKAASLIFLNGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G L L + + ++ H F
Sbjct: 188 LPLIILLLTLNLALGLLNRVSPQLSVFAIGFPITLTVGILSLGMMMPLLAPFCEHLFGEV 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|300024562|ref|YP_003757173.1| type III secretion system inner membrane R protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526383|gb|ADJ24852.1| type III secretion system inner membrane R protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 254
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 66/246 (26%), Positives = 123/246 (50%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M+ + ++ ++ CRVG+C M+LPG S IP+Q+RL A+A S+ ++P ++D +
Sbjct: 1 MSELTQQTLLVPLIVFCRVGACFMVLPGFSSDRIPVQLRLFVAIAISLAIMPIVYDDVRP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+++ E G G ++R++ L L+F ++ G S I +
Sbjct: 61 VAAGPAEGLVSIIVTESLAGLFLGFIVRIFFLALEFAAIAMANLAGYGSAFSHAIEGNDP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
TP + + + ++ +V D H + L SY + +G E S V+ + F
Sbjct: 121 STPYSVFVTLPAVVMFFVADLHIAIIRMLHNSYAALKVGSEFAAPPNLSMIVSTFGSAFK 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ L+LS+ + + ++ N++ G LNK++PQIP YF+STP+++ G + L I+ FS
Sbjct: 181 LTLQLSAALVVYSVMVNLAFGFLNKMIPQIPSYFVSTPFVVLGGLIILLQIDSGIISIFS 240
Query: 241 HSFLYG 246
+
Sbjct: 241 SLVMQA 246
>gi|157363488|ref|YP_001470255.1| flagellar biosynthetic protein FliR [Thermotoga lettingae TMO]
gi|157314092|gb|ABV33191.1| flagellar biosynthetic protein FliR [Thermotoga lettingae TMO]
Length = 258
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ L+V R + P + ++P+QV++ + S +LP + + I L V
Sbjct: 8 ETKFLAWVLVVTRNAGMFTIAPFFADWFVPLQVKVLLVVFLSWTVLPSINEVIPLHTPV- 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A ++ +G G L + + L G V T +G L +
Sbjct: 67 -AQIVLSMLSNYVIGLTIGFLALLPVIALSIAGEVFGTQMGFALSSVFDPQR-EEVPIHG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ + GL + H ++ A+V S +IP+ + L N S + F I +++
Sbjct: 125 ELLYVFGLYIFVALKGHLLIYQAVVDSLNSIPVSKTLIDFNFVSVLTEKISEMFSIAMKI 184
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + F V +IS+G++++LVPQ+ ++ + P I +G + + I + FS
Sbjct: 185 GMPMIGFMFVTSISLGIISRLVPQMNVFMVGMPLKILVGFILMVGMIPVWADVFSQI 241
>gi|30063388|ref|NP_837559.1| flagellar biosynthesis protein FliR [Shigella flexneri 2a str.
2457T]
gi|56480008|ref|NP_707835.2| flagellar biosynthesis protein FliR [Shigella flexneri 2a str. 301]
gi|110805919|ref|YP_689439.1| flagellar biosynthesis protein FliR [Shigella flexneri 5 str. 8401]
gi|30041640|gb|AAP17368.1| flagellar biosynthetic protein FliR [Shigella flexneri 2a str.
2457T]
gi|56383559|gb|AAN43542.2| flagellar biosynthetic protein FliR [Shigella flexneri 2a str. 301]
gi|110615467|gb|ABF04134.1| flagellar biosynthetic protein FliR [Shigella flexneri 5 str. 8401]
gi|281601389|gb|ADA74373.1| Flagellar biosynthetic protein FliR [Shigella flexneri 2002017]
gi|313650172|gb|EFS14585.1| flagellar biosynthetic protein FliR [Shigella flexneri 2a str.
2457T]
gi|332756106|gb|EGJ86459.1| flagellar biosynthetic protein FliR [Shigella flexneri 4343-70]
gi|332757213|gb|EGJ87550.1| flagellar biosynthetic protein FliR [Shigella flexneri 2747-71]
gi|332766688|gb|EGJ96892.1| flagellar biosynthetic protein FliR [Shigella flexneri 2930-71]
gi|333003308|gb|EGK22854.1| flagellar biosynthetic protein FliR [Shigella flexneri K-218]
gi|333017636|gb|EGK36948.1| flagellar biosynthetic protein FliR [Shigella flexneri K-304]
Length = 261
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|187733359|ref|YP_001879729.1| flagellar biosynthesis protein FliR [Shigella boydii CDC 3083-94]
gi|187430351|gb|ACD09625.1| flagellar biosynthetic protein FliR [Shigella boydii CDC 3083-94]
Length = 261
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + V+ P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLPLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|77918768|ref|YP_356583.1| flagellar biosynthetic protein FliR [Pelobacter carbinolicus DSM
2380]
gi|77544851|gb|ABA88413.1| flagellar biosynthetic protein FliR [Pelobacter carbinolicus DSM
2380]
Length = 258
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 99/241 (41%), Gaps = 1/241 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ + + RV S LP + P+++R+ ++ ++V+ P L + +
Sbjct: 5 LFSIASIQGFLVCAARVTSLFSALPIFGSAQTPVRIRIALSVTIALVVYPLLPELLPA-T 63
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
+ L+ E +G + G + R+ + ++F GS+I +G +
Sbjct: 64 PLTPIGLGILIAQETMVGLMIGFIARLVFIAVEFGGSIIGYQMGFAAANVFDPQSQHQVS 123
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
++ + +L D HH + SY +P G G + F +
Sbjct: 124 LISQFQNVFAILLFLAFDVHHLFLRLIADSYRLLPAGDAKLGGEAVLFLSRLTGEMFTLA 183
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++ S+P L ++ + +G+++++ Q+ + +S P IG+ L + L+++++
Sbjct: 184 VKFSAPVLIVLLLSGLVLGIMSRMFQQLNAFMLSFPINIGVSFLSIGLTMQLLAVMLQRE 243
Query: 243 F 243
F
Sbjct: 244 F 244
>gi|86150314|ref|ZP_01068540.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596317|ref|ZP_01099554.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 84-25]
gi|218562791|ref|YP_002344570.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85839139|gb|EAQ56402.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88191158|gb|EAQ95130.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360497|emb|CAL35294.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|284926403|gb|ADC28755.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315926597|gb|EFV05978.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni DFVF1099]
Length = 255
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L++ R+G I+ P S + IPM ++ + ++ L P L++ ++
Sbjct: 12 VVTFMLLLARMGGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + S + + ++
Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L+ D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246
>gi|327441038|dbj|BAK17403.1| flagellar biosynthesis pathway, component FliR [Solibacillus
silvestris StLB046]
Length = 258
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 7/233 (3%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
RV + + +P S IP QVR+ A+A + ++ T +++ F A+Y LV+ E
Sbjct: 16 VRVSAFFVSVPLFSYRTIPPQVRIILAVALAWMMY----YTFNIEPFEINAFYLLLVLKE 71
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+G + GL + +Q G I +G + + + + + LL L
Sbjct: 72 AIIGLMLGLAAMIIVSAVQIAGGFIDFQMGFAMANIIDPQTGAQSPLMGQFLNFLMLLLL 131
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
I+ HH + + SY +P+ Q + + + F I ++S+P +
Sbjct: 132 LSINGHHLILDGIYYSYQFMPMDQFFPNFGEEGTALFIIKIFVSVFAIAFQMSAPIVATL 191
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ +++G+ K VPQ+ I+ I P I +G L L +++ ++V +
Sbjct: 192 FLVTLALGITGKTVPQMNIFVIGFPIKIAVGFLVLIVTMGVLVGVMKELIEFM 244
>gi|39936945|ref|NP_949221.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris
CGA009]
gi|192292773|ref|YP_001993378.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris
TIE-1]
gi|39650802|emb|CAE29325.1| putative flagellar biosynthetic protein FliR [Rhodopseudomonas
palustris CGA009]
gi|192286522|gb|ACF02903.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris
TIE-1]
Length = 255
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 122/237 (51%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L+ R+G+ +ML+P S IP +V+L A+ ++++LP + +
Sbjct: 10 ALAATFMLVFARIGAMVMLMPTFGESNIPTRVKLSIALLLTLIMLPLHRSAYQID-MSSL 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ +G V G RV LQ G+VI+ +GL +++ + + +
Sbjct: 69 TPLLVLMLQEIAVGIVLGATARVTLSALQVAGAVIAQQLGLGFVSAVDPTQGQQGVVVGN 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++G+ L+ D H+ V AL SY G+ L+ G++ + F + L+LS
Sbjct: 129 FLTMLGVTLLFATDMHYLVIQALSDSYKVFAPGELLHTGDVAALATKAFAAAFKLGLQLS 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+PFL F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + + ++ F F
Sbjct: 189 APFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIVIGFIVLAVVLTTMMGAFLGYF 245
>gi|251772430|gb|EES52997.1| Flagellar biosynthesis protein FliR [Leptospirillum
ferrodiazotrophum]
Length = 269
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 93/232 (40%), Gaps = 1/232 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI+ R ++ +P + +P +V+ A+A S +L P + ++ A
Sbjct: 19 FVLILARTSGVLIAMPAFNSRAVPTKVKALVAVALSALLFPVVGGRVNFHETGYDA-LLF 77
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
++ E +G G + + G + G + + L + I
Sbjct: 78 SILTEFVVGVSMGFAAYLVFAAVALAGQLAGVQAGFGIVDVINPLGVAEVPLLGNFQTQI 137
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L + + + +AL +SY + +G G+ F+ ++ + L L+SPF+
Sbjct: 138 AFLIFLATNAQYAMLWALARSYDVVGVGGASFSGSYFAGIAHLFGRMMSLGLVLASPFIV 197
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ N+ +G L+K++PQ+ + + P ++ G + L + + +
Sbjct: 198 GGVILNLVLGFLSKMMPQMNLISLGLPVMVLGGLVLTILGLPFLGTVLGEAM 249
>gi|197104397|ref|YP_002129774.1| flagellar biosynthesis protein FliR [Phenylobacterium zucineum
HLK1]
gi|196477817|gb|ACG77345.1| flagellar biosynthesis protein FliR [Phenylobacterium zucineum
HLK1]
Length = 253
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 127/237 (53%), Gaps = 1/237 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + L+ R+G+ IML+PGL ++IP ++RL FA+A +++L P L T +
Sbjct: 10 VFAAGLVFARLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAP-PIPASAGA 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ V+ EL +G + G ++R++ L L G ++S L+ + + L++ +
Sbjct: 69 LAGEVIRELLIGLMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTFL 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
G++G++ + D HH ALV+SY P G+E+ G+ + F + L+L++P
Sbjct: 129 GMLGIVLILTTDLHHMFLAALVRSYAIFPFGREVPVGDAGQLAIQTTSRAFALGLQLAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ ++ N+++GL+ +++P ++FI++P L+ LG +S+ +I + +
Sbjct: 189 VVVLSLIVNVAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVIGMVWVDRYRE 245
>gi|300717243|ref|YP_003742046.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
gi|299063079|emb|CAX60199.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
Length = 261
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ LF + RV + IM P LS I +V++ + + VLLP L T +
Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKSISKKVKIGLGVMITYVLLPSLPPT---NVTLFSV 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G G ++ ++ G VI +GL+ T + L L
Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPASRLNMPVLARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + + S+ T+PIG + GN F + F+ LRL+
Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVADSFHTLPIGGDPINGNAFLALTKAASLIFLNGLRLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F
Sbjct: 189 PLITLLLTLNLALGLLNRVAPQLSVFAIGFPVTLSIGIIFISLMMPLLAPFCEHLFSEVF 248
>gi|224372500|ref|YP_002606872.1| flagellar biosynthesis protein FliR [Nautilia profundicola AmH]
gi|223589960|gb|ACM93696.1| flagellar biosynthetic protein FliR [Nautilia profundicola AmH]
Length = 255
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 3/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L+ R+ S + +P + + IPM V+ FA SI+L P T +N A
Sbjct: 12 VVTYLLLFVRISSFLAFMPFFNYTAIPMNVKAAFAFWLSILLFPI---TPKFAYEINIAT 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
V+ E+ G+ +++ L++ G IS +G L M + + T ++
Sbjct: 69 VLLSVLNEVAFAFFVGMALQMVFDVLKYAGEQISFVMGFTLANVMDPNAGVQTTIISQFF 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ ++ H L K++ +P G+ ++ N++ F+ + F++ + ++ P
Sbjct: 129 TWVAVMMFLSFGGDHLEIMFLDKTFAMLPFGEFFSYHNVYEYFITYMSKYFLLGIAMAFP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ ++ +I G++ K +PQ + + P I + + L I ++ FS+ L F
Sbjct: 189 IIAISLMGDIIFGMIMKTMPQFNLLVVGFPIKITISFMVLIAIIASLMQLFSNEILQVF 247
>gi|315127307|ref|YP_004069310.1| flagellar biosynthesis protein FliR [Pseudoalteromonas sp. SM9913]
gi|315015821|gb|ADT69159.1| flagellar biosynthesis protein FliR [Pseudoalteromonas sp. SM9913]
Length = 259
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L + R+ S IM++ G+ +P ++++ A+ + +++P L F
Sbjct: 10 QWLSDFLLPLVRISSMIMIMAGIGAKNVPARIKMGLAVVVTFLVVPVLPAATFTNLFS-- 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+V+ ++ +G G + G +++ GL + + S+ ++ +
Sbjct: 68 FEMILVVLQQMLIGVAIGFASTLLLNTFVLAGQILAMQTGLGFASVVDPSNGMSVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L +V + H + +V S+ +PI + + V F L LS
Sbjct: 128 FYLILATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWAVDHYWDIVTWGGWMFTTALVLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
L +V N++ G++ + PQ+ I+ I P+ + G + + ++ V QF +L
Sbjct: 188 LAPLTAMLVINMAFGIMTRAAPQLNIFSIGFPFTLVAGLVIIWATLGNFVTQFEFQWLKM 247
>gi|260776471|ref|ZP_05885366.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607694|gb|EEX33959.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC
BAA-450]
Length = 260
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 94/239 (39%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ +VRL +A + ++P + D ++
Sbjct: 11 WIANYFWPYTRIAAMLMVMSVTGARFVSTRVRLYLGLAITFAVMPVIPAVPDTIELLSFQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G + + G ++ L + + ++ L L
Sbjct: 71 GFMTL-LEQIIIGVAMGTITQFMIQTFVILGQILGMQASLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H ++ +V S+ ++PIG F L F + L +S
Sbjct: 130 FMFLATMFFLATDGHLKMIMLVVMSFKSLPIGSGSLNSVDFRELALWLGIMFKVALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L I + + +L G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALIVGLLLCWYIIAGLFSHYELFWLQG 248
>gi|86152607|ref|ZP_01070812.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121612403|ref|YP_001000854.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157415443|ref|YP_001482699.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp.
jejuni 81116]
gi|283956577|ref|ZP_06374056.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 1336]
gi|85843492|gb|EAQ60702.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249142|gb|EAQ72103.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157386407|gb|ABV52722.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 81116]
gi|283791826|gb|EFC30616.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 1336]
gi|307748085|gb|ADN91355.1| Flagellar biosynthetic protein fliR [Campylobacter jejuni subsp.
jejuni M1]
Length = 255
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++
Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + S + + ++
Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L+ D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246
>gi|103488401|ref|YP_617962.1| flagellar biosynthetic protein FliR [Sphingopyxis alaskensis
RB2256]
gi|98978478|gb|ABF54629.1| flagellar biosynthetic protein FliR [Sphingopyxis alaskensis
RB2256]
Length = 259
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 93/242 (38%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ L + R G+ + P + +P+Q+RL A+A + + + + V+
Sbjct: 10 EAMLQLWMLGMIRPGAAFIAAPVFGAANVPVQLRLVIALAVGVPAVAASGMVLPAEGIVS 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+V E+ +G G ++++ G VIS A+GL + + + + +
Sbjct: 70 VPGIFFIV-GEVVIGLAIGFVLQMGLAAALLAGEVISNAMGLGFASMVDPLSGASSSAIG 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ D H + +V SY +P G + + F L +
Sbjct: 129 QFLAMLATALFLAADGHLLLIDIVVDSYTALPPGNAFPSWDALGGVIRFGSLMFAAALTI 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F I+ I +G++ + P + ++ + P + G + L ++ +
Sbjct: 189 ALPVGFVLILVQIIMGVIGRSAPALNLFAVGIPATLLAGIVLLGVATPAMAEAIIRILSD 248
Query: 246 GF 247
Sbjct: 249 AL 250
>gi|114570481|ref|YP_757161.1| flagellar biosynthetic protein FliR [Maricaulis maris MCS10]
gi|114340943|gb|ABI66223.1| flagellar biosynthetic protein FliR [Maricaulis maris MCS10]
Length = 250
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 116/245 (47%), Gaps = 1/245 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M ++ + L+ R+G+ +MLLPG IP++ RL FA+ F ++L P + ++ +
Sbjct: 1 MIPELPALVYAAGLVFARLGAILMLLPGFGEPSIPVRFRLAFALLFCLILGPIIAPSLPV 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
A + +VM EL +G + G + R++ G VI GL + S S
Sbjct: 61 MPEQPLA-MAGIVMSELIIGLMIGAVARIFMSTAAVAGQVIGMQSGLAMAQSFDPSQGAQ 119
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+++ + + L+ L + HH + SY G + + ++ F
Sbjct: 120 GALISTFLNLTFLMLLLATNTHHMLLQMAANSYQVFDPGSMPSLTDAADWALSAFIDAFR 179
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I ++L+SP + + ++F +++G+L++L+PQ I+FI+ P I +G L +++ + +
Sbjct: 180 IGVQLASPLIMYGLLFYLALGVLSRLMPQAQIFFIAMPSNIMIGLFILAIALGAMSAVWL 239
Query: 241 HSFLY 245
Sbjct: 240 ERMQR 244
>gi|85859182|ref|YP_461384.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
gi|85722273|gb|ABC77216.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
Length = 259
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 111/244 (45%), Gaps = 2/244 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSM-SYIPMQVRLCFAMAFSIVLLPFLWDTID 59
+ + + L I RV S I+++P IP+ ++ ++ + +L PF+
Sbjct: 3 LPVITPEQIACLIFIFLRVSSMIVVMPIFGGDKTIPVGIKGGLSLLITFLLFPFVRMDFG 62
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
Q + +++ E+ +G + G + R G+QF G +I +G ++ + S
Sbjct: 63 FQ-LMELTPMVVIMIGEILIGVIIGFVARFIFAGIQFAGELIGFQMGFSVVNIIDPVTST 121
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ ++ L + +L ++ HH A+ +S+ I Q + + + F
Sbjct: 122 QVSLISQLKYFLAMLVFLAVNAHHIFLSAMAESFVRISPMQFHLTERVIAPLCLLSMEVF 181
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+I +++S+P + I ++++G++ + VPQI I+ + P I LG +FL LS I V
Sbjct: 182 IIAVKISAPVVAVLIFTHVALGVVARTVPQINIFIVGFPLQIALGLIFLGLSAPIFVNYC 241
Query: 240 SHSF 243
F
Sbjct: 242 IRLF 245
>gi|205356203|ref|ZP_03222969.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|205345808|gb|EDZ32445.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
CG8421]
Length = 255
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++
Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + S + + ++
Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L+ D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFAMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246
>gi|115523201|ref|YP_780112.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris
BisA53]
gi|115517148|gb|ABJ05132.1| type III secretion system inner membrane R protein
[Rhodopseudomonas palustris BisA53]
Length = 248
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 86/244 (35%), Positives = 134/244 (54%), Gaps = 3/244 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59
M + ++++FLI CRVG+C+M+ PG S S IPMQVRL A+ +++L P L T+
Sbjct: 1 MIDATSTSVLAVFLIFCRVGTCMMVAPGYSRSNIPMQVRLFLAINVTLMLSPLLVATVRP 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
L ++ EL +G V GL RV+ L+ ++I++AIGLNL + D+
Sbjct: 61 LVEGAAAPAIIAIIWSELVVGLVIGLTARVFFAALETMATMIASAIGLNLAGTT--EDTE 118
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
L LI + + ++ D H ++ L+ SY ++ N + V L F
Sbjct: 119 HVPALVPLITLTATVLFFITDQHWELLRGLISSYRVWVPAVGISGENGLAQLVEHLSQAF 178
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ LR++SPF+ + I+ N++IGL NKL P IP+YFIS P+++ G L L L+ V QF
Sbjct: 179 TLALRIASPFVVYSIIVNLAIGLANKLTPSIPVYFISLPFVLFGGLLLLYLTSREAVLQF 238
Query: 240 SHSF 243
S +F
Sbjct: 239 SIAF 242
>gi|86150984|ref|ZP_01069200.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315124645|ref|YP_004066649.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85842154|gb|EAQ59400.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315018367|gb|ADT66460.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 255
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++
Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + S + + ++
Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L+ D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIVLGFVVLIAILLVMMQYFKNLILELF 246
>gi|326796453|ref|YP_004314273.1| flagellar biosynthetic protein FliR [Marinomonas mediterranea
MMB-1]
gi|326547217|gb|ADZ92437.1| flagellar biosynthetic protein FliR [Marinomonas mediterranea
MMB-1]
Length = 260
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 4/236 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+S L RVG+ +M LP + +QVR+ FA SI + P + V +
Sbjct: 14 ISFLLPFFRVGAFLMALPLFGSRLVSVQVRILFAFVISIAITPIVDIPSFDPISVA---F 70
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L+ +L G V G +I + G + + GL S ++ + +
Sbjct: 71 IPLIAEQLLAGFVMGFVITILFQAFSLAGQLAAMKAGLGFAMSNDPANGVTVATMGQYFL 130
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ LA + HH +F +V+S+ PIG ++ V + F L + P
Sbjct: 131 SMVGLAFVGTNGHHVMFEFIVESFDYWPIGSGFALERLWD-VVQLGGWMFEKALLIVLPL 189
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ N+S G++ K PQ+ I+ + P ++ LF + + + + F
Sbjct: 190 TVAVLIMNVSFGVVAKASPQLNIFALGFPVILLFSLLFFWMMLGDFLDIYRLFFED 245
>gi|332533114|ref|ZP_08408983.1| flagellar biosynthetic protein FliR [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037396|gb|EGI73850.1| flagellar biosynthetic protein FliR [Pseudoalteromonas haloplanktis
ANT/505]
Length = 259
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L + R+ S IM++ GL +P ++++ ++ + +++P L F
Sbjct: 10 QWLSDFLLPLVRISSMIMIMAGLGAKNVPTRIKMGLSVVVTFLVVPVLPPATFTNLFS-- 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+V+ ++ +G G + G +++ GL + + S+ + +
Sbjct: 68 FEMILVVIQQMLIGVAIGFASILLLNTFVLAGQILAMQTGLGFASVIDPSNGASVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L + + H + +V S+ +PI + + V F L LS
Sbjct: 128 FFLILATLLFFAFNGHLMMIQMVVHSFQVLPIDGTWWSVDHYWDIVTWGGWMFTTALVLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
L +V NIS G++ + PQ+ I+ I P+ + G + ++ QF +L
Sbjct: 188 LAPLTAMLVINISFGIMTRAAPQLNIFAIGFPFTLVAGLTIIWATLGNFTLQFEFQWLKM 247
>gi|254255043|ref|ZP_04948360.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa
AUO158]
gi|124899688|gb|EAY71531.1| Flagellar biosynthesis pathway component FliR [Burkholderia dolosa
AUO158]
Length = 287
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 97/238 (40%), Gaps = 2/238 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ CR+ + + P L + IPM+ R A+ + + P + + A
Sbjct: 37 AAIIWPFCRIAAALAAAPILGDAMIPMRARALAALVLAFTVQPGIPAGPSIDPLSLAA-- 94
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ ++ +G + G + L GS++S+ IGL++ + L++++
Sbjct: 95 VAVIGEQVAIGGLLGFAFHLVLSALLAFGSIVSSQIGLSMAQMNDPMNGQPSDVLSNVMY 154
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++ +L + +D H + L +S+ PIG + F + F L+ P
Sbjct: 155 VLFILLFFAVDGHLLMTQVLARSFDVWPIGGSAFDFSALRRFALAVGWMFSAAAALALPV 214
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
F +V + +GLLN+ P + ++ + G L + L + + + ++
Sbjct: 215 TFATLVVQVGLGLLNRAAPTLNLFSLGFSVTTMFGLLLVVLLLPSLPDHYHRMVIHVL 272
>gi|57238051|ref|YP_179300.1| flagellar biosynthesis protein FliR [Campylobacter jejuni RM1221]
gi|148926184|ref|ZP_01809869.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|57166855|gb|AAW35634.1| flagellar biosynthetic protein FliR [Campylobacter jejuni RM1221]
gi|145845355|gb|EDK22448.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|315058611|gb|ADT72940.1| Flagellar biosynthesis protein FliR [Campylobacter jejuni subsp.
jejuni S3]
Length = 255
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++
Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + S + ++
Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L+ D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246
>gi|323491457|ref|ZP_08096641.1| flagellar biosynthesis protein FliR [Vibrio brasiliensis LMG 20546]
gi|323314326|gb|EGA67406.1| flagellar biosynthesis protein FliR [Vibrio brasiliensis LMG 20546]
Length = 260
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 95/239 (39%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ +VRL +A + ++P L D V+ A
Sbjct: 11 WIANYFWPYTRIAAMLMVMSVTGARFVFTRVRLYLGLAITFAVMPALPAVPDTIELVSFA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G + + G ++ L + + ++ L L
Sbjct: 71 GFMTL-LEQIIIGVAMGTVTQFMIQTFVILGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ L D H ++ +V S+ +IPIG F L F + L +S
Sbjct: 130 FMFLATLFFLATDGHLKMIMLVVMSFKSIPIGTGSLTTVDFRELALWLGIMFKVALSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L I + + +L G
Sbjct: 190 SGIIALLTINLSFGVMTRAAPQLNIFSLGFAFALMVGLLICWYIIAGLYNHYEIFWLQG 248
>gi|254470011|ref|ZP_05083415.1| flagellar biosynthetic protein FliR [Pseudovibrio sp. JE062]
gi|211960322|gb|EEA95518.1| flagellar biosynthetic protein FliR [Pseudovibrio sp. JE062]
Length = 257
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 1/242 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+I++S L+ R+G+ IML+P ++IP++VRL A+ + V LP + +
Sbjct: 10 VIVVSFLLMFARIGTMIMLVPAFGETFIPVRVRLTIALLLTYVFLPINSNLYPDDVMSSL 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGIS-DSLAETPLN 125
L+ EL +G GL +++ + L G++++ GL + +
Sbjct: 70 PKLLALLGGELMVGFFIGLSMKLISYALSVAGTIMANQSGLAFAMGGDATNSGQQGALMG 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ + ++G+ ++V + H+ + A+ S+ P G L G++ + V + F + +RL
Sbjct: 130 NFLNVLGICMVFVTNLHYVMIAAMQDSFVLFPPGNPLPVGDLSTLAVETVTHMFSVAVRL 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+PF+ IVF S+GLLNKL+PQ+ I+FI+ P I +G L + ++ + F
Sbjct: 190 GAPFIVVGIVFYFSLGLLNKLMPQMQIFFIAMPVNIMIGFGIFLLLLSTLMGYYLSEFRE 249
Query: 246 GF 247
Sbjct: 250 AL 251
>gi|240145486|ref|ZP_04744087.1| flagellar biosynthetic protein FliR [Roseburia intestinalis L1-82]
gi|257202301|gb|EEV00586.1| flagellar biosynthetic protein FliR [Roseburia intestinalis L1-82]
Length = 259
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L LI+ R+ + + P P Q ++ F+ ++++ F+ T + Y+
Sbjct: 14 LILILVRISCFVYIAPFFGTKNAPSQAKIGFSFFVALLVYGFVDKT--AIEYTGLIGYAI 71
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E G + G + + F G++I IGL++ T + + T +L
Sbjct: 72 IVLKEGITGLLIGFAANICNSIILFAGNIIDMDIGLSMVTEFDPTMNTQVTITGNLYNYF 131
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
LL L D HH + A+V S+ IPI GQ N+ ++ S + F+I R+ P
Sbjct: 132 ILLLLIATDMHHVILQAVVDSFTVIPINGQFFNWDSLAGSITQYMTDLFVIGFRIFLPIF 191
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
++ N +G+L K+ PQ+ ++ + I +G L L+I ++ S F
Sbjct: 192 ACMMILNCILGILAKVAPQMNMFAVGMQMKILVGFGVLFLTISLLPGIASFIFTEM 247
>gi|153951433|ref|YP_001397725.1| flagellar biosynthesis protein FliR [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938879|gb|ABS43620.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
doylei 269.97]
Length = 255
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++
Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + S + ++
Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L+ D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNIGMFNIFIIGFTMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 246
>gi|119469998|ref|ZP_01612803.1| flagellar biosynthesis protein R [Alteromonadales bacterium TW-7]
gi|119446708|gb|EAW27981.1| flagellar biosynthesis protein R [Alteromonadales bacterium TW-7]
Length = 259
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 96/240 (40%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L + R+ S IM++ GL +P +++L ++ + LL +
Sbjct: 10 QWLSDFLLPLVRISSMIMIMAGLGAKNVPTRIKLGLSVV--VTLLVVPVLPPATFTNLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+V+ ++ +G G + G +++ GL + + S+ + +
Sbjct: 68 FEMILVVIQQMLIGIAIGFASTLLLNTFVLAGQILAMQTGLGFASVIDPSNGASVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L +V + H + +V S+ +PI + + V F L LS
Sbjct: 128 FFLILATLLFFVFNGHLMMIQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
L +V NIS G++ + PQ+ I+ I P+ + G + + ++ + QF +L
Sbjct: 188 LAPLTAMLVINISFGIMTRAAPQLNIFAIGFPFTLVAGLVIIWATLGNFILQFEFQWLKM 247
>gi|226225722|ref|YP_002759828.1| flagellar biosynthetic protein FliR [Gemmatimonas aurantiaca T-27]
gi|226088913|dbj|BAH37358.1| flagellar biosynthetic protein FliR [Gemmatimonas aurantiaca T-27]
Length = 295
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 3/239 (1%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
S + +L L R+G +++ P S +PM++R + F+++LLP T D
Sbjct: 12 FSAPGVATALVLTALRIGGLLLIAPAWSAKSVPMKLRTAMLVLFAVLLLPTALATTDRAT 71
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
+ E +G G + G +F G +++T IGL+ ++
Sbjct: 72 LAITP---ATFLAETAIGFAFGFAAALVIAGAEFAGELMTTTIGLSGAAIFDPVNNTQGA 128
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
S + ++ L L + H + A+ KS+ +P+G ++ F + T F
Sbjct: 129 IFGSFMQLMALTLLLITGGHIVMIEAIAKSFSVLPLGAPIDMQAGFLALTKAGGTIFATG 188
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L+ ++P + +V NI++ +L + PQ+ I ++ P IG+G L S+ +IV+
Sbjct: 189 LQFAAPVIAAILVTNIALAILGRAAPQLQIMSLAFPLQIGIGLLTFAGSVGLIVHALGE 247
>gi|291536021|emb|CBL09133.1| flagellar biosynthetic protein FliR [Roseburia intestinalis M50/1]
Length = 259
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L LI+ R+ + + P P Q ++ F+ ++++ F+ T + Y+
Sbjct: 14 LILILVRISCFVYIAPFFGTKNAPSQAKIGFSFFVALLVYGFVDKT--AIEYTGLIGYAI 71
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E G + G + + F G++I IGL++ T + + T +L
Sbjct: 72 IVLKEGITGLLIGFAANICNSIILFAGNIIDMDIGLSMVTEFDPTMNTQVTITGNLYNYF 131
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPI-GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
LL L D HH + A+V S+ +PI GQ N+ ++ S + F+I R+ P
Sbjct: 132 ILLLLIATDMHHVILQAVVDSFTVVPINGQIFNWDSLAGSITQYMTDLFVIGFRIFLPIF 191
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
++ N +G+L K+ PQ+ ++ + I +G L L+I ++ S F
Sbjct: 192 ACMMILNCILGILAKVAPQMNMFAVGMQMKILVGFGVLFLTISLLPGIASFIFTEM 247
>gi|241761182|ref|ZP_04759271.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241374801|gb|EER64262.1| flagellar biosynthetic protein FliR [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 265
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + + + R G+ + P L + P+ VR+ A+A + + + V+
Sbjct: 10 ENYLWIWLIALLRPGAAFVAAPLLGANAFPVTVRVMLALAVGLPSVMDAHLILPDSGLVS 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
LV+ E+ G G +++ T +I A+GL + + + L
Sbjct: 70 FTGL-FLVVGEIITGIAIGFAVQIGYAAGYCTSELIGNAMGLGFASMIDPVNGSNSNVLT 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I+G D H + +V+SY T+P+G +F F I + +
Sbjct: 129 QIFTILGAFFFLAADGHLLLIRIIVESYQTMPVGGPGLNNQLFLKLTQFAGQLFSIGMLI 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F I+ + +G L++ P + ++ + P + +G L + +S+ I +
Sbjct: 189 ALPVTFSIILIQVMMGFLSRTAPALNLFAVGMPMALIIGILLIAISVPAISEGVIDAIRS 248
Query: 246 GF 247
G
Sbjct: 249 GL 250
>gi|294675614|ref|YP_003576229.1| flagellar biosynthetic protein FliR [Rhodobacter capsulatus SB
1003]
gi|294474434|gb|ADE83822.1| flagellar biosynthetic protein FliR [Rhodobacter capsulatus SB
1003]
Length = 258
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 110/240 (45%), Gaps = 4/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ F++ RVG + ++P +P +V+L AF+++++P ++ +
Sbjct: 15 LLWVGFIVFLRVGGTMAVMPAFGEMMVPTRVKLGLTFAFTLIVMPGALPFVNAPD--TSL 72
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E+ +G GL++R++ L LQ G++ + + L+ G + + + L
Sbjct: 73 PVAVWMFAEIVIGLFIGLMLRLFVLCLQIAGTIAAQSTSLS--QLFGGTTGEPQPAVGEL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + GL + H +V + SY +P G + + + F + +++
Sbjct: 131 LVLAGLAIAVHLGLHVKVTEIFLGSYQALPPGAFPDADLFRQWGLGGISRAFALGFSIAA 190
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
PF+ +++N+++G +N+ +PQ+ + I P G L +++ + ++ +F
Sbjct: 191 PFVIAGLIYNVALGAINRAMPQLMVSMIGAPAQTLGGLALLMIALPTGLLVWNDAFDAFL 250
>gi|319781654|ref|YP_004141130.1| flagellar biosynthetic protein FliR [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167542|gb|ADV11080.1| flagellar biosynthetic protein FliR [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 250
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 84/245 (34%), Positives = 136/245 (55%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I
Sbjct: 1 MSVLSQGVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDKIFP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+++ EL +G + G + R+Y L+F GS I+ +G I +
Sbjct: 61 FVDPRPQILVPMIISELLVGGLIGAMTRLYMEALRFMGSAIAMLVGYGGTGGPAIEEPEP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L ++I LL L+V DF H++ ALV SY P+ N + + TF
Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIIRALVSSYTVAPVNIFFNPQAALVDVTDTVSDTFF 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+++RL SPF+ + I+ N++IG +NKL PQIPIYFIS P++I G + ++ ++ F
Sbjct: 181 LVIRLGSPFVAYAILVNLTIGFVNKLTPQIPIYFISQPFIIAGGMIIFYFAVGTMLSLFV 240
Query: 241 HSFLY 245
F+
Sbjct: 241 DGFVD 245
>gi|283954736|ref|ZP_06372252.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 414]
gi|283793576|gb|EFC32329.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 414]
Length = 255
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 106/239 (44%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L++ R+ I+ P S + IPM ++ + ++ L P L++ ++
Sbjct: 12 VVTFMLLLARMSGLIVFFPFFSHNSIPMVIKSTIVLFLTMYLYPLAR----LESLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL++++ + G I+ +G + + + + + + ++
Sbjct: 68 FVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPNSGTSMPITSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L+ D HH + L S G I +G N+ + F+I +S P
Sbjct: 128 NLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 188 ILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLVAILLVMMQYFKNLVLELF 246
>gi|313497811|gb|ADR59177.1| FliR [Pseudomonas putida BIRD-1]
Length = 258
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + RV + +M +P +P ++RL A+A ++V++P L + R
Sbjct: 11 TWVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPPLPEFDPLSLR 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G + GL +++ G +++ +G+ + + ++ + T ++
Sbjct: 71 GML--LCAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVTVISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + +++ H VF L +S+ T+P+G L N F + F L L
Sbjct: 129 FMTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLI 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V NI+ G++ + PQ+ I+ I P + +G + + ++ +
Sbjct: 188 LPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSHYQALASET 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|170683764|ref|YP_001742350.1| lateral flagellar export/assembly protein LfiR [Escherichia coli
SMS-3-5]
gi|170521482|gb|ACB19660.1| lateral flagellar export/assembly protein LfiR [Escherichia coli
SMS-3-5]
Length = 260
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|146294568|ref|YP_001184992.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32]
gi|145566258|gb|ABP77193.1| flagellar biosynthetic protein FliR [Shewanella putrefaciens CN-32]
Length = 259
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 110/246 (44%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ +++ + CR+ M++P L +Y+P+ VR+ A++ + +L P L +
Sbjct: 6 STEISMLIGGFWWPFCRIMGAFMIMPLLGNAYVPVMVRIFLALSIAALLAPMLPPVPPVD 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+ + L + +L +G + L + + + G+++S +GL + ++ +
Sbjct: 66 AISLASLF--LAIEQLLIGFMLALFLTLLIHVMTMLGNIMSMQMGLAMAVMNDPANGDSS 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
++ I G L ++ H +V S+ PIG + + V+ L F
Sbjct: 124 PIISEWFQIFGTLIFLALNGHLVAINIIVDSFRLWPIGHGIFELPLM-GLVSRLAWLFAA 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L L+ P + ++ NI+ G+L++ P + I+ + P + +G L + LS+ I ++S
Sbjct: 183 SLMLAIPAVLAMLMVNITFGVLSRSAPSLNIFSLGFPMTMLMGLLCVFLSLSGIPSRYSD 242
Query: 242 SFLYGF 247
L
Sbjct: 243 LCLDAL 248
>gi|323136993|ref|ZP_08072073.1| type III secretion system inner membrane R protein [Methylocystis
sp. ATCC 49242]
gi|322397754|gb|EFY00276.1| type III secretion system inner membrane R protein [Methylocystis
sp. ATCC 49242]
Length = 250
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 1/239 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFV 64
E + F+I CR+G C+M+ PG S +P+++RL A+ ++ L P L DT+
Sbjct: 5 ESAIAPTFIIFCRIGGCLMVAPGFSSERVPVRIRLYIAIGVTLALAPALIDTLQPGLRGA 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ ++M EL +G GLL R+Y L L+ + ++ IGL + ++ L
Sbjct: 65 DPLKLGAIIMGELTIGVFIGLLARLYFLALETLATAVAMTIGLGNIFGSALIEAEPAPAL 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
++ + I ++ ++V D H ++ L SY T P+ + + +L ++++ LR
Sbjct: 125 STFVVICAIMLVFVTDQHLEMIRGLYLSYQTTPVFSPAAPESYLNELTRVLTQSYLLALR 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+SSPFL F ++ N++ G L +L PQ+P+YFIS P++I LG + + FS F
Sbjct: 185 ISSPFLLFGLIVNLAFGFLARLTPQVPVYFISGPFVIVLGIYGFSIVAQDFFTAFSGQF 243
>gi|303326360|ref|ZP_07356803.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. 3_1_syn3]
gi|302864276|gb|EFL87207.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. 3_1_syn3]
Length = 263
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 102/234 (43%), Gaps = 1/234 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+SL L + RV + +LP S + IP+ V+ + FS+ + P L + + +
Sbjct: 12 LSLLLTMMRVSIVMFMLPVFSTNNIPIPVKAAVTIVFSLGVWPHLALSGAIM-PAHPFDM 70
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+++ E+ LG V G+ + +G+Q G ++ +G + +
Sbjct: 71 VLMLLGEVVLGLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGNQTGATAFFLW 130
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++ LLA +D H + S+ +P G N+ +++ F++ L++++P
Sbjct: 131 MVSLLAFLALDGHLYMIKGFAASFALVPPGGLFIGENLLWQVLDLAAQVFVLALKIAAPV 190
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + +++ L+ + PQI I P IG+G F+ L + ++ H
Sbjct: 191 MVALFMVEVALALVARTSPQIHIMEFGFPIKIGVGFFFVGLLLVVMADHVEHFI 244
>gi|32471371|ref|NP_864364.1| flagellar biosynthetic protein fliR [Rhodopirellula baltica SH 1]
gi|32443212|emb|CAD72043.1| probable flagellar biosynthetic protein fliR [Rhodopirellula
baltica SH 1]
Length = 264
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 47/231 (20%), Positives = 104/231 (45%), Gaps = 4/231 (1%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYS 70
L++ R+G +M +P + +P ++R A+ + +L+P L D + N +
Sbjct: 17 LVLTRLGMLLMAMPAIG-VGVPKRIRALLALVLTAILMPTLAAQCDHPSMPTIDNLPELA 75
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
+ E +G + G ++ GLQ G I++ G+ L S+ + S + L ++G+
Sbjct: 76 VAIGREALIGMLIGATTQMVITGLQLAGEAITSTGGMQLGDSIDPTTSSSMPALARMVGM 135
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+ + + H V LV+S+ IP G ++ + + ++ + +R++ P +
Sbjct: 136 LVTTVMLITGAHRVVLRLLVESFQHIPPGNVQFTDSMMDAVIVVMGNSMASGVRVAGPVI 195
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++ N+ GL+++ +PQI + I + L+I + + F
Sbjct: 196 AALLLANLVTGLISRTLPQINVLAIGLSINALAMLVVTALTIGSVAWLFQE 246
>gi|269836607|ref|YP_003318835.1| flagellar biosynthetic protein FliR [Sphaerobacter thermophilus DSM
20745]
gi|269785870|gb|ACZ38013.1| flagellar biosynthetic protein FliR [Sphaerobacter thermophilus DSM
20745]
Length = 260
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+V R+G+ +M +PG + +P +++ A+A S+VL+PF + + A
Sbjct: 12 IAVFLLMVTRIGTMLMFMPGFAGRSVPPAIKVLAALALSLVLVPFTRP--GTETLTDPAS 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ + E LG + G I V ++ S++ IGLNL S L TPLN+
Sbjct: 70 FTVGLAREFLLGLLMGFGIAVVFGAIEMAASLVGAQIGLNLSGVFNPSLDLQGTPLNTFY 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L + + HH V AL +S+ T+PIG N ++ + + F+ LR+ P
Sbjct: 130 LVAAALVFFSANGHHLVLMALHRSFQTVPIGSAALADNAGTAIIALASLMFVDALRIGLP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + +G+LN++VPQ+ ++F+ P I G L L++ ++ + G
Sbjct: 190 VAGTLLAVDACLGVLNRMVPQMNVFFVGLPVKIFAGFAVLLLTLPFLIRVLAPMVTDG 247
>gi|13472611|ref|NP_104178.1| flagellar biosynthesis protein FliR [Mesorhizobium loti MAFF303099]
gi|14023357|dbj|BAB49964.1| flagellar biosynthesis protein; FliR [Mesorhizobium loti
MAFF303099]
Length = 250
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 86/245 (35%), Positives = 136/245 (55%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I
Sbjct: 1 MSVLSQSVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDRIIP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+++ EL +G + G + R+Y L+F GS I+ IG I +
Sbjct: 61 FVDPRPQILVPMIISELLIGGLIGAMTRLYMEALRFMGSAIAMLIGYGGSGGPAIEEPEP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L ++I LL L+V DF H++ ALV SY P+ N + + TF
Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIVRALVASYTVAPVNVFFNPQAALVDITDTVSDTFF 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+++RL SPF+ + I+ N++IG +NKL PQIPIYFIS P++I G + +I ++ F
Sbjct: 181 LVIRLGSPFVAYAILVNLTIGFVNKLTPQIPIYFISQPFVIAGGMIIFYFAIGTMLSLFV 240
Query: 241 HSFLY 245
F+
Sbjct: 241 DGFVD 245
>gi|15616706|ref|NP_239918.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11386790|sp|P57186|FLIR_BUCAI RecName: Full=Flagellar biosynthetic protein fliR
gi|25346394|pir||D84939 flagellar biosynthetic protein fliR [imported] - Buchnera sp.
(strain APS)
gi|10038769|dbj|BAB12804.1| flagellar biosynthetic protein fliR [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 258
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 103/242 (42%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + F + RV S + P I + ++ + S ++ PFL ++ +
Sbjct: 11 TLISNFFWPMIRVLSFFSVAPIFKEKLINRKSKILLSGMISWLVWPFLP---EVHTVLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L++ ++ +G V G ++ + +G +I +GL+ T + + + ++
Sbjct: 68 YFGFLLILQQILIGIVLGFTAQLLFATINLSGEIIGLQMGLSFATFFNNNSQIGTSIISR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I+ L ++ H + ++ S+ ++PI NIF + + F+ L L
Sbjct: 128 FLNILALFVFITLNMHLYLISIVIDSFYSMPIDGYFLNVNIFFILLKFSSSIFLNGLLLV 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + + + LLN+L PQI I+ I P + LG L L I +++
Sbjct: 188 LPIMIILLSISFVMSLLNRLSPQISIFSIGFPLNLILGMLMLYFLIPVMLPFLKKILDDL 247
Query: 247 FF 248
F
Sbjct: 248 IF 249
>gi|308050044|ref|YP_003913610.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799]
gi|307632234|gb|ADN76536.1| flagellar biosynthetic protein FliR [Ferrimonas balearica DSM 9799]
Length = 259
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ ++ R+ L+P S ++P++V++ A + ++ P L + A
Sbjct: 12 MIGRIWWPFFRIAGAFALMPFFSNGHVPVRVKVLLAFFLATLVGPVLPTPPPVDPLSAHA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ +L +G + GL++ + L G ++S +GL + ++ + L
Sbjct: 72 --LLIAFEQLAVGAMMGLILSMLLHILSMLGQMLSMQMGLAMSVMNDPANGVNHALLGQW 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + G L +D H +V+S+ PIG + + + TF + L L+
Sbjct: 130 MVMYGTLLFLALDGHLVALGIVVESFTLWPIGSGVQELPLMMLIMK-FGWTFAMALMLAI 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ NI+ G+LNK P + +Y + P + LG + + +S + +++ L
Sbjct: 189 PAVMAMLMVNITFGVLNKSAPTLNVYSLGFPLAMMLGLVSILISFSGLPGRYTDLCLDAL 248
>gi|209884539|ref|YP_002288396.1| flagellar biosynthetic protein FliR [Oligotropha carboxidovorans
OM5]
gi|209872735|gb|ACI92531.1| flagellar biosynthetic protein FliR [Oligotropha carboxidovorans
OM5]
Length = 258
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 120/237 (50%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + L+ RVG+ +MLLPG + +P+++RL A+ +++LLP +
Sbjct: 10 VLAATFMLVFARVGAMMMLLPGFGEANVPVRLRLGIALLLAMILLPLHRAAYHVDLTSIN 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A +V E+ +G V G R L GS+I+ IGL T++ + L +
Sbjct: 70 AVMILMV-HEIIIGVVLGATARFTLAALSVAGSIIAQQIGLGFVTAVDPTQDQQSVILAN 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I+GL ++ D H+ V AL SY G+ + G++ + F I ++L+
Sbjct: 129 FLTILGLTLIFATDTHYLVIAALNDSYTLFQPGELMPSGDVAALATKAFTMAFTIGVQLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+PF+ F ++FN+ +GLL +++PQ+ +YF+ P I G L L + + ++ F F
Sbjct: 189 APFIIFGLIFNLGLGLLARMMPQMQVYFVGVPLSILAGFLLLGIVLVALMGTFLDYF 245
>gi|77165625|ref|YP_344150.1| flagellar biosynthesis protein FliR [Nitrosococcus oceani ATCC
19707]
gi|76883939|gb|ABA58620.1| Flagellar biosynthesis protein FliR [Nitrosococcus oceani ATCC
19707]
Length = 236
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 3/224 (1%)
Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83
M +P +P+++RL A+A ++V+ P + T V LVM + +G
Sbjct: 1 MAMPLFGSKVVPVRIRLVLALALTVVIAPVIPATSVAALSVEGG---LLVMQQFLIGFAM 57
Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143
L++++ G +++T +GL + M + +A + ++ L ++ L ++ H
Sbjct: 58 ALVLQMVFQAFAIGGQIVATQMGLGFASLMDPQNGVAVSMVSQLYTVLITLVFLGLNGHL 117
Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203
V L +S+ +P+G E F + ++ P + + N++ G++
Sbjct: 118 VVIQVLAESFYVLPLGVERASLGGFWQLAGAGSWMLAGSVLIALPAIGALSLVNLTFGVM 177
Query: 204 NKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ PQ+ + I P + LG L ++ +
Sbjct: 178 SRAAPQLNPFSIGFPLTLILGFWVLLFTLPNAPSHLVNLTDTAL 221
>gi|26991042|ref|NP_746467.1| flagellar biosynthesis protein FliR [Pseudomonas putida KT2440]
gi|24986074|gb|AAN69931.1|AE016632_2 flagellar biosynthetic protein FliR [Pseudomonas putida KT2440]
Length = 258
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + RV + +M +P +P ++RL A+A ++V++P L + R
Sbjct: 11 TWVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPPLPEFDPLSLR 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L ++ +G + GL +++ G +++ +G+ + + ++ + T ++
Sbjct: 71 GML--LCAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVTVISQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ + +++ H VF L +S+ T+P+G L N F + F L L
Sbjct: 129 FMTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVV-NHFWELAGRMGWVFGAGLLLI 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V NI+ G++ + PQ+ I+ I P + +G + + ++ +
Sbjct: 188 LPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSHYQALASET 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|238785489|ref|ZP_04629472.1| Flagellar biosynthetic protein fliR [Yersinia bercovieri ATCC
43970]
gi|238713591|gb|EEQ05620.1| Flagellar biosynthetic protein fliR [Yersinia bercovieri ATCC
43970]
Length = 260
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ F + RV + I P LS I +V++ A+ + ++ P L + +
Sbjct: 11 TMVSHYFWPLIRVLALITTAPVLSERQINRKVKVGLAVLITFLIAPALP---PVNIPLVS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G GL ++ ++ G VI +GL+ T S + L+
Sbjct: 68 SGALWVAAQQILIGVTIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNTSVLSR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ ++ +L + H + L S+ T+PI E G+ F + FM L L+
Sbjct: 128 LLNLLAMLLFLSFNGHLWLISLLADSFHTLPIQFEPLNGSGFLTLAQTGSLIFMNGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN++ PQ+ ++ I P + +G L L L + ++ H F
Sbjct: 188 LPLITLLLTLNLALGMLNRMTPQLSVFVIGFPLTLTVGILSLGLIMPLLAPFAEHLFSEF 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|114777580|ref|ZP_01452561.1| Flagellar biosynthesis protein FliR [Mariprofundus ferrooxydans
PV-1]
gi|114552051|gb|EAU54568.1| Flagellar biosynthesis protein FliR [Mariprofundus ferrooxydans
PV-1]
Length = 260
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/235 (23%), Positives = 116/235 (49%), Gaps = 2/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ L++ RV + IM+LP L +P Q++ + +I++ P + D + A
Sbjct: 11 IIIGLLVMLRVSALIMMLPILGHQLVPAQIKRGLIVLLTILIFPLVADKVAAIPLKPVA- 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + + E+ + L ++ +Q G +IS +G+++ ++ ++ L
Sbjct: 70 FVIVAIHEILVAAAIALFAQLIFAAIQLAGQLISFQMGMSVANVFDPMTHSQQSVVSQLA 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +L + HH AL++S+ PI Q + F S+ + T F++ L++++P
Sbjct: 130 VTLAMLLWISVGAHHMFITALIESFTLFPIHQAIYFP-ALSTLTDAAATMFVLALKIAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + +++GLL++ VPQI ++F+S P +GLG L L + VY S +F
Sbjct: 189 LMVLMTLVYVALGLLSRAVPQIQVFFVSFPLTVGLGLLTFALGMPAFVYLVSDAF 243
>gi|167623391|ref|YP_001673685.1| flagellar biosynthesis protein FliR [Shewanella halifaxensis
HAW-EB4]
gi|167353413|gb|ABZ76026.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis
HAW-EB4]
Length = 265
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 91/237 (38%), Gaps = 2/237 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + R+ S M++ + P +VRL ++A ++ + P L + F A
Sbjct: 12 IAGYLWPLTRISSMFMVMAVFGATTTPTRVRLLLSVAVTVAVAPVLPAMPTIDLFSLSAA 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ +G G + TG +I L + + S + +
Sbjct: 72 FVT--AQQIIIGVAMGFATLLLMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNFF 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + +D H + ++ S+ +IP+ + + F + F L +S
Sbjct: 130 LLLTTVIFLAVDGHLLLIKMVIASFDSIPVSMQGLSLVSYRLFTEFVGYMFGAALTMSLS 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + N+S G++ + PQ+ I+ I P + G L L++ I+ F +
Sbjct: 190 AIVALLTINLSFGVMTRASPQLNIFSIGFPVTMIAGLFILWLTLSPIMTHFDEVWRE 246
>gi|238799424|ref|ZP_04642853.1| Flagellar biosynthetic protein fliR [Yersinia mollaretii ATCC
43969]
gi|238716728|gb|EEQ08615.1| Flagellar biosynthetic protein fliR [Yersinia mollaretii ATCC
43969]
Length = 260
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 106/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ F + RV + I P LS I +V++ A+ + ++ P L + +
Sbjct: 11 ALVSQYFWPLIRVLALITTAPVLSEKQINRKVKVGLAVLITFLIAPALP---PVNIPLVS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G GL ++ ++ G VI +GL+ T S + L+
Sbjct: 68 SGALWVAAQQILIGVTIGLTMQFAFAAIRLAGEVIGLQMGLSFATFFDPSGGPNTSVLSR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ ++ +L + H + L S+ T+PI E G F + FM L L+
Sbjct: 128 LLNLLAMLLFLTFNGHLWLISLLADSFHTLPIQFEPLNGGGFLTLAQTGSLIFMNGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++G+LN++ PQ+ ++ I P + +G L L L + ++ H F
Sbjct: 188 LPLITLLLTLNLALGMLNRMTPQLSVFVIGFPLTLTVGILSLGLIMPLLAPFAEHLFSEF 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|218133681|ref|ZP_03462485.1| hypothetical protein BACPEC_01550 [Bacteroides pectinophilus ATCC
43243]
gi|217991056|gb|EEC57062.1| hypothetical protein BACPEC_01550 [Bacteroides pectinophilus ATCC
43243]
Length = 260
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 109/234 (46%), Gaps = 2/234 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI+ R+ + + P + + P +V++ F+ A +I++ D + Y+
Sbjct: 14 FILILVRISTFVYAAPFFNTANTPNRVKIGFSFALAILVYTL--DLGITYTYSGMLDYAA 71
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E +G + G + F+G +I +G+++ T + +++L +
Sbjct: 72 IVLSEAAVGLLLGYAANASVQIIMFSGHIIDVDMGISMATIFDPTTKTQVGIMSNLYYYL 131
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L L V + + A+V +Y IPIGQ +++++ V+ + F+I R++ P
Sbjct: 132 LSLLLIVSGLYRYLVSAIVDTYKVIPIGQAAFRPSLYTTIVDFIGDYFVIGFRIALPMFA 191
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ N +G+L ++ PQ+ ++ + I +G + + ++ ++ ++ F
Sbjct: 192 CMMLLNCILGVLARIAPQMNMFVMGMQLKIFVGIIVVTFTLVMLPSVSNYIFQE 245
>gi|194434960|ref|ZP_03067203.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 1012]
gi|194416795|gb|EDX32921.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 1012]
Length = 260
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 11 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 67
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 68 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 128 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + ++ H F F
Sbjct: 188 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLVAPFCEHLFSEMF 247
>gi|327537627|gb|EGF24339.1| flagellar biosynthetic protein fliR [Rhodopirellula baltica WH47]
Length = 264
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/231 (20%), Positives = 104/231 (45%), Gaps = 4/231 (1%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYYS 70
L++ R+G +M +P + +P ++R A+ + +L+P L D + N +
Sbjct: 17 LVLTRLGMLLMAMPAIG-VGVPKRIRALLALVLTAILMPTLAAQCDHPSMPTIDNLPELA 75
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
+ E +G + G ++ GLQ G I++ G+ L S+ + S + L ++G+
Sbjct: 76 VAIGREALIGMLIGATTQMVITGLQLAGEAITSTGGMQLGDSIDPTTSSSMPALARMVGM 135
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+ + + H V LV+S+ IP G ++ + + ++ + +R++ P +
Sbjct: 136 LVTTVMLITGAHRVVLRLLVESFQHIPPGNVQFTDSMMDAVIVVMGNSMASGVRVAGPVI 195
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++ N+ GL+++ +PQI + I + L+I + + F
Sbjct: 196 AALLLANLVTGLISRTLPQINVLAIGLSINALAMLVVTALTIGSVAWLFQE 246
>gi|293408346|ref|ZP_06652185.1| flagellar biosynthetic protein FliR [Escherichia coli B354]
gi|291471524|gb|EFF14007.1| flagellar biosynthetic protein FliR [Escherichia coli B354]
Length = 260
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 12 LVLGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIELAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|219681462|ref|YP_002467847.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682018|ref|YP_002468402.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471137|ref|ZP_05635136.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219621751|gb|ACL29907.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624305|gb|ACL30460.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311085826|gb|ADP65908.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086399|gb|ADP66480.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311086978|gb|ADP67058.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 258
Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 103/242 (42%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + F + RV S + P I + ++ + S ++ PFL ++ +
Sbjct: 11 TLISNFFWPMIRVLSFFSVAPIFKEKLINRKNKILLSGMISWLVWPFLP---EVHTVLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L++ ++ +G V G ++ + +G +I +GL+ T + + + ++
Sbjct: 68 YFGFLLILQQILIGIVLGFTAQLLFATINLSGEIIGLQMGLSFATFFNNNSQIGTSIISR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I+ L ++ H + ++ S+ ++PI NIF + + F+ L L
Sbjct: 128 FLNILALFVFITLNMHLYLISIVIDSFYSMPIDGYFLNVNIFFILLKFSSSIFLNGLLLV 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + + + LLN+L PQI I+ I P + LG L L I +++
Sbjct: 188 LPIMIILLSISFVMSLLNRLSPQISIFSIGFPLNLILGMLMLYFLIPVMLPFLKKILDDL 247
Query: 247 FF 248
F
Sbjct: 248 IF 249
>gi|56964017|ref|YP_175748.1| flagellar biosynthesis protein FliR [Bacillus clausii KSM-K16]
gi|56910260|dbj|BAD64787.1| flagellar biosynthetic protein FliR [Bacillus clausii KSM-K16]
Length = 260
Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 99/240 (41%), Gaps = 7/240 (2%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
+ LI RV S ++LP + +P ++L + + L ++D+ +
Sbjct: 10 AFLLIFIRVSSFFVVLPLFNHRTVPAPLKLGLSAFLAA----TLAVSLDVPELALDLPFL 65
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
L + E +G GL+ + +Q G VI +G L + S + +
Sbjct: 66 LLALKEFAIGIAAGLMASMILYAVQVAGGVIDFHLGFMLANVVDPQTGAQSPLTGSYLYL 125
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ---ELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+L L +ID HH + ++ SY +P+ Q G++ ++ F + + ++
Sbjct: 126 FAMLYLLIIDGHHLLLDGVIYSYQFVPLDQLVLPFGSGHVMEHVTQVMVMLFAMAVSMAM 185
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++++G++++ VPQ+ ++ + P + G + + I + + F
Sbjct: 186 PVAGALFLVDVALGIISRTVPQMNVFVVGIPIKMLAGFIVFAIYIGVFFMSVNVLFEELL 245
>gi|323968366|gb|EGB63773.1| flagellar biosynthetic protein FliR [Escherichia coli M863]
gi|327253082|gb|EGE64736.1| flagellar biosynthetic protein FliR [Escherichia coli STEC_7v]
Length = 261
Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|284989538|ref|YP_003408092.1| flagellar biosynthetic protein FliR [Geodermatophilus obscurus DSM
43160]
gi|284062783|gb|ADB73721.1| flagellar biosynthetic protein FliR [Geodermatophilus obscurus DSM
43160]
Length = 254
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 3/228 (1%)
Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
P M +L L R ++L P + IP V+ A+A S+ L+ + +
Sbjct: 6 PAGTMAALLLGTARATGFVLLAPPFNSRSIPAPVKGALALALSVALMTRIAPELPDP--- 62
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ + E+ +G G ++ V +Q+ G +I G +LQ + + +
Sbjct: 63 TTGFLVVGAVTEVAIGAALGFVVHVLFAAVQYAGDLIDLTGGFSLQPAYDPLSMTTSSSV 122
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
L ++ L+ H V SY +P+G + + + L F+ L+
Sbjct: 123 GRLHYLLATTLLFTSGGHLLVVRGFATSYEGLPVGGSVPTEQLAQVLITALSMMFLAALQ 182
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
++ P + ++ ++++ LL++ P + I+ P I L L L+
Sbjct: 183 IAGPMVAVLLLADVALALLSRAAPALNIFSFGFPVKIMLTMALLGLTF 230
>gi|149184190|ref|ZP_01862508.1| flagellar biosynthetic protein FliR [Erythrobacter sp. SD-21]
gi|148831510|gb|EDL49943.1| flagellar biosynthetic protein FliR [Erythrobacter sp. SD-21]
Length = 261
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 90/242 (37%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E M + ++ R+G+ ++ P + +PM VR+ A +I + ++ + +
Sbjct: 12 EQDMWRVVFLMTRIGAALLAAPFFGATSVPMAVRVSITGALAIFVATWM-PEVQTPEAIL 70
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ E+ +G G ++++ +I +G+++ S T
Sbjct: 71 SLEGLLAIAGEVVIGLALGFVLQLAFAAPTIAAELIGGGMGMSMAVSQDAMGGGTTTSFG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
I+ L H + +SY P GQ F++ F +R+
Sbjct: 131 QYFVIVLTLIFLSTGAHLHWVALVAESYSAFPPGQTWLGAERFAAIAGFASFMFETAIRI 190
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P ++ + G+L++ P + ++ + P + G L +S +I QF+
Sbjct: 191 ALPVTLILLLVQVITGILSRSAPSLNLFALGLPAGVLAGMAALIISAPLIYDQFAGLVAD 250
Query: 246 GF 247
Sbjct: 251 AL 252
>gi|307720324|ref|YP_003891464.1| flagellar biosynthetic protein FliR [Sulfurimonas autotrophica DSM
16294]
gi|306978417|gb|ADN08452.1| flagellar biosynthetic protein FliR [Sulfurimonas autotrophica DSM
16294]
Length = 254
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ L+ R + +P + IPM ++ A F++V + L ++
Sbjct: 9 ETNVVGFLLLFFRFAGLFIAVPIFNHQNIPMNIKASMAFFFAVVFYSSMPA---LHISID 65
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
V+ EL LG G+++++ + F G IS +G ++ +++ ++ ++
Sbjct: 66 VPTILVAVLGELLLGLSVGVVLQLAYNVITFAGGQISFMMGFSMASAIDPQSGVSMPIIS 125
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++GL+ L ++ HH + + S T+P+G + ++F ++ F++ +
Sbjct: 126 QFLSLMGLMILLSLNLHHWMLLFIDHSLKTVPLGGFVMSKDLFHYIMHATSNMFLVGFII 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + ++ G+L K +PQ + I P I + + L + I+
Sbjct: 186 AFPIIALSWLADVIFGMLMKTMPQFNLLVIGFPIKIMVAFVVLIATFTAIMLILKGQIQE 245
Query: 246 GF 247
F
Sbjct: 246 AF 247
>gi|300818630|ref|ZP_07098838.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1]
gi|300528802|gb|EFK49864.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1]
Length = 261
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|92116949|ref|YP_576678.1| flagellar biosynthesis protein FliR [Nitrobacter hamburgensis X14]
gi|91799843|gb|ABE62218.1| flagellar biosynthetic protein FliR [Nitrobacter hamburgensis X14]
Length = 256
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 1/235 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ R+G+ +MLLPG +IP++V+L A+ ++++LP + + A
Sbjct: 13 AAFMLVFARIGAMVMLLPGFGEVFIPVRVKLAIALLLTLIILPLHRSAYHVD-MQSVAPL 71
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ L++ E+ +G V G RV L GSVI+ +GL TS+ + + + +
Sbjct: 72 AVLMVHEIIIGVVLGATARVTLAALSVAGSVIAQQLGLGFVTSIDPTQGQQGALMGNFLT 131
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++G+ L+ D H+ V AL SY G+ + G++ + F I L+LS+PF
Sbjct: 132 LLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAAAFKIGLQLSAPF 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L F +VFNI +G+L +L+PQ+ +YF+ P I +G + L + ++ + F+
Sbjct: 192 LVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFVILAAVLASMMGTYMDYFI 246
>gi|56460296|ref|YP_155577.1| flagellar biosynthesis protein FliR [Idiomarina loihiensis L2TR]
gi|56179306|gb|AAV82028.1| Flagellar biosynthesis protein FliR [Idiomarina loihiensis L2TR]
Length = 261
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 96/237 (40%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV S IM + S + + +V++ ++A + + P L + ++
Sbjct: 10 EWLEQHLWPLTRVSSMIMSMALFSGTIVNSRVKIFLSLAIIMAVSPALPEINAGVEMMSV 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + ++ +G GLL ++ G +I+ IGL + + ++ +
Sbjct: 70 GGFL-VTAQQVVIGVALGLLSILFLQTFVLGGQIIAMQIGLGFASMVDPTNGQQVPVIAQ 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L D H + + +V S+ IP+G + + F L
Sbjct: 129 FFLMLASLVFLAFDGHLLMIHMVVASFDAIPVGMTGLDADALFAVAEWGVYMFSAALTAM 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ ++ N+S G++ + PQ+ I+ I P + G + + L++ ++ F + +
Sbjct: 189 LSGVIALLLINLSFGVMTRAAPQLNIFAIGFPITMVSGLVVVWLTMGGFIFHFENQW 245
>gi|296282254|ref|ZP_06860252.1| flagellar biosynthetic protein FliR [Citromicrobium bathyomarinum
JL354]
Length = 261
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 94/242 (38%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + + ++ RVG+ ++ P S +P+ VR+ F A +I + + +
Sbjct: 12 EADIWRVVFLMTRVGAALLAAPFFGASNVPVVVRISFTGAMAIFI-SIWLPEVATPPALL 70
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ E +G + G ++++ VI ++GL++ T+ + + T
Sbjct: 71 TLDGMLALAGEALIGLMLGFVLQIAFAAPTIAAEVIGGSMGLSMATTTDPNGGGSTTAFG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
I+ L + H + +SY P GQ F + T F LR+
Sbjct: 131 QYFIIVLTLIFLATNAHLHWLALVTESYRAFPPGQTWIGPERFETIFMFGGTLFETALRI 190
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P ++ I G+L++ P + ++ + P + G L ++ +I QF+
Sbjct: 191 ALPVTLILLLVQIVTGILSRSAPSLNLFALGLPAGVLAGIAALIIAAPLIYDQFTDLVQV 250
Query: 246 GF 247
Sbjct: 251 AL 252
>gi|170725985|ref|YP_001760011.1| flagellar biosynthesis protein FliR [Shewanella woodyi ATCC 51908]
gi|169811332|gb|ACA85916.1| flagellar biosynthetic protein FliR [Shewanella woodyi ATCC 51908]
Length = 261
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 92/238 (38%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ S + RV S +M + + + P+++RL +M + + P L ++ F +
Sbjct: 8 IASYMWPLFRVASMLMAMAIVGANTTPVRIRLLLSMTITFAIAPVLPPMENVDLFSLSSG 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + + + G + + TG +I L + + S + +
Sbjct: 68 FIIFQQIIIGV--AMGFVTLLVMQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNFF 125
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + +D H + LV S+ TIPI + + F L +S
Sbjct: 126 LLLTTMIFLAVDGHLVLIRMLVVSFDTIPISDQGISIASYKLLAEWGAYMFGAALTMSMT 185
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N+S G++ + PQ+ I+ I P + G L L++ I+ F +
Sbjct: 186 AIVALLMINLSFGVMTRASPQLNIFAIGFPVTMVTGLFILWLTLTPIMEHFGAVWRDA 243
>gi|329849683|ref|ZP_08264529.1| flagellar biosynthetic protein FliR [Asticcacaulis biprosthecum
C19]
gi|328841594|gb|EGF91164.1| flagellar biosynthetic protein FliR [Asticcacaulis biprosthecum
C19]
Length = 273
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 121/241 (50%), Gaps = 1/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ ++ LI+ R+ S IML+PGL +P ++R+ A+ ++V+ P + +T+ +
Sbjct: 26 TQLWAVGLILLRLASMIMLMPGLGDQAVPARLRIGLALMLALVITPIVGNTLP-PLPNSL 84
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + E+ +G + G L+RV L G ++S L+ + + + T L +
Sbjct: 85 GDMLGIALHEIIIGLMIGTLMRVLIFALVIAGEIMSLQTTLSFAQTANPAQAQPSTSLGT 144
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++G++ ++ + HH A+V SY +++ G+ + + + TF++ L++S
Sbjct: 145 FLAMLGMVLIYATNLHHLFIRAMVDSYQVFAPTRDVMVGDATTLMLQTVTKTFLLALQMS 204
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+P + F ++FNI+ G + +++P P++F +TP + G + L + F +
Sbjct: 205 APLIAFALIFNIATGFIGRMMPNFPVFFAATPVSVLAGLSIMALGLGATGMVFIEHYEEL 264
Query: 247 F 247
Sbjct: 265 L 265
>gi|326622853|gb|EGE29198.1| flagellar biosynthetic protein FliR [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 245
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 3/232 (1%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75
+ RV + I P LS IP +V+L + ++V+ P L + L M
Sbjct: 1 MLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSIAALWLTMQ 57
Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135
++ +G G ++ ++ G I +GL+ T + L L ++ ++ +L
Sbjct: 58 QILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLL 117
Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195
+ H + LV ++ T+PIG N F + F+ L L+ P + +
Sbjct: 118 FLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLT 177
Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
N+++GLLN++ PQ+ I+ I P + +G + + + +I H F F
Sbjct: 178 LNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFCEHLFSEIF 229
>gi|34498460|ref|NP_902675.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC
12472]
gi|34104315|gb|AAQ60674.1| flagellar biosynthetic protein FliR [Chromobacterium violaceum ATCC
12472]
Length = 259
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ +++ CR+ + + P + + +PM+ R+ A+A ++ +P + + F
Sbjct: 11 LVPAVWWPFCRLMAAFAIAPFIGDAVVPMRARVGLALALAVACIPGMPAHSPIDPFTLHG 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G + GL ++ L G ++S+ +GL++ + + ++SL
Sbjct: 71 --VAASVEQVVIGLLFGLAFQLTLSVLALLGFLLSSQMGLSMAIMNDPGNGNSSDVVSSL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ L + +D H + + S+ P+G + + + L+
Sbjct: 129 LYLLAALLFFAMDGHLVLVQVVYASFRAWPLGGGIP-QASLPVLAASVGWVMSAAMILAL 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P +F V G++N++ P + ++ + P + G L L ++++ Q+
Sbjct: 188 PVVFATFVVQAGFGMINRVAPALNLFSLGFPVVTLFGLSTLTLLMQVLPPQYLSLSEQTL 247
>gi|300936101|ref|ZP_07151042.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1]
gi|300458750|gb|EFK22243.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1]
Length = 260
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 12 LVLGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|149195094|ref|ZP_01872186.1| Flagellar biosynthesis protein FliR [Caminibacter mediatlanticus
TB-2]
gi|149134807|gb|EDM23291.1| Flagellar biosynthesis protein FliR [Caminibacter mediatlanticus
TB-2]
Length = 254
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
T+ ++ +++ L+ R+ S + LP + IPM V+ ++ SI+ P + +
Sbjct: 4 TLLSDVNVVTFLLLFIRISSFLSFLPFFNYMNIPMNVKAALSIWLSILFFPIVP---KVN 60
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+N + E+ G+ +++ L+F IS +G + + +
Sbjct: 61 FEINLINILLAIFNEIAFAFFVGMALQLIFDILKFAAEQISFVMGFTMANVIDPNFGGQS 120
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
T L+ I +L H L K +P G N+ I+ F+ + FMI
Sbjct: 121 TILSQFFIWIAILVFLTFGGDHLEILLLSKFMSNLPFGAFFNYHKIYEYFLVYMGKYFMI 180
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ L+ P + ++ +I G++ K +PQ + + P I + + L + ++ FS
Sbjct: 181 GVGLAFPIIAISLMSDIIFGMIMKTMPQFNLLVVGFPIKIFVSFIVLMAILSSMMLVFSR 240
Query: 242 SFLYGF 247
F
Sbjct: 241 EIKEVF 246
>gi|20807871|ref|NP_623042.1| flagellar biosynthesis protein FliR [Thermoanaerobacter
tengcongensis MB4]
gi|20516435|gb|AAM24646.1| Flagellar biosynthesis/type III secretory pathway protein
[Thermoanaerobacter tengcongensis MB4]
Length = 260
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 100/236 (42%), Gaps = 3/236 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ +L P ++P ++ S+++ + + N
Sbjct: 11 VQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFASLIVFDVMPPVS--ISIDNVLT 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LV+ E +G GL + + G +I +G L + I + + I
Sbjct: 69 YFLLVISEFLVGLTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQVPLMGNFI 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ +L +++ H+ +F L KS IPIG+ + + M+ F I R+S+
Sbjct: 129 YIMTILIFMLMNGHYLLFTFLAKSTEIIPIGKIYFDLSGMLQVLTKMVSDMFAIGFRISA 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + ++ ++ +G++++ +PQ+ ++ + P + +G L + + + + F
Sbjct: 189 PIILTTVLTDLVLGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIVDFIF 244
>gi|89056678|ref|YP_512129.1| flagellar biosynthetic protein FliR [Jannaschia sp. CCS1]
gi|88866227|gb|ABD57104.1| flagellar biosynthetic protein FliR [Jannaschia sp. CCS1]
Length = 256
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 116/244 (47%), Gaps = 5/244 (2%)
Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
EI + + + RVG+C ++LPGL IP++VRL A+AF++ L P + + +
Sbjct: 11 LSEIWLATGIAVFLRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVSAV 70
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
+ E G + G+ +R LQ G++ + + L+ +G +
Sbjct: 71 IPP---LTAFFSEAIAGLIIGMALRYLVHALQVAGTIAAQSTSLS--QILGGATPDPLPA 125
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
+ +++ + GL + H + + SY +P G ++ V+ + +F + +
Sbjct: 126 MGAILMLGGLTLAVISGLHVHLVQTFLHSYDVLPFGNLPGPRDLAGWSVDQVSASFSLAV 185
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++PFL +++N+++G++NK +PQ+ + F+ P + G L ++ I+ + H+F
Sbjct: 186 SLAAPFLVASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPVWLHAF 245
Query: 244 LYGF 247
Sbjct: 246 EGAL 249
>gi|157373226|ref|YP_001471826.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3]
gi|157315600|gb|ABV34698.1| flagellar biosynthetic protein FliR [Shewanella sediminis HAW-EB3]
Length = 257
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + R+ M++P LS SYIP+ VR+ A+ S +L P L +
Sbjct: 10 SSFIGIFWWPFFRIMGAFMVMPFLSSSYIPVTVRVLLALTISTLLAPMLPPLPSVDAISI 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A + L + +L +G + GL + + + G+++S +GL + ++ + L
Sbjct: 70 GALF--LAIEQLLVGFMLGLFLTIMIHVMTLLGAMMSMQMGLAMAVMNDPANGSSNPILG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ G L +D H LV S+ PIG + + V+ F L L
Sbjct: 128 QWFLLYGTLLFLALDGHLVAIGVLVDSFRLWPIGSGVLDLPLM-GLVSRFAWIFASALML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ NI+ G+L++ P + ++ + P + +G L + LS + ++S L
Sbjct: 187 ALPSILAMLMVNITFGVLSRAAPSLNVFALGFPMSMLMGLLCVMLSFSGLPTRYSDICLD 246
Query: 246 GF 247
Sbjct: 247 AL 248
>gi|119503677|ref|ZP_01625760.1| flagellar biosynthetic protein FliR [marine gamma proteobacterium
HTCC2080]
gi|119460739|gb|EAW41831.1| flagellar biosynthetic protein FliR [marine gamma proteobacterium
HTCC2080]
Length = 257
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 94/233 (40%), Gaps = 2/233 (0%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
RV + +++ P S S + ++ R+ A+ + + P + F + +
Sbjct: 19 PFLRVSAMLLIAPVFSASGVSVRFRVLLAVLIAALAAPIIPTPPTTDLFSANG--LLMAI 76
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
E+ +G G ++++ + + G +S +GL ++ + + L+ + I+ L
Sbjct: 77 REVGIGFAIGFVLQLVFGAIVYAGQAVSMTMGLGFAMAVDPQNGVQVPVLSQMYVILATL 136
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
++ H + ++ SY +P + + + F + L+ P + +
Sbjct: 137 LFLSLNGHLILIATVIDSYQILPANLSGIPVSSLGAVAALGSKVFASGISLALPAMAAML 196
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ N++ G++ + PQ+ I+ + P + G L +++ ++ S
Sbjct: 197 MVNVTFGVITRTAPQLNIFAVGFPMTLMGGFFVLFINMPNLIAALSQFLDQAL 249
>gi|16125328|ref|NP_419892.1| flagellar biosynthesis protein FliR [Caulobacter crescentus CB15]
gi|221234067|ref|YP_002516503.1| flagellar biosynthesis protein FliR [Caulobacter crescentus NA1000]
gi|3023777|sp|Q45975|FLIR_CAUCR RecName: Full=Flagellar biosynthetic protein fliR
gi|535424|gb|AAA66207.1| FliR [Caulobacter crescentus CB15]
gi|13422378|gb|AAK23060.1| flagellar biosynthesis protein FliR [Caulobacter crescentus CB15]
gi|220963239|gb|ACL94595.1| flagellar biosynthesis protein FliR [Caulobacter crescentus NA1000]
Length = 251
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 60/234 (25%), Positives = 120/234 (51%), Gaps = 1/234 (0%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
L+ RVG+ +M +PG+ IP ++RL FA+ +++L P + +T+ V
Sbjct: 15 LVFARVGAMVMTMPGIGDQAIPARIRLSFALLMALILAPLVQNTVG-PIPSTLGGLGGAV 73
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ E+ +G + G ++R++ L G +IS L+ S S + T + + + ++GL
Sbjct: 74 IHEVLIGLMIGSVLRLFMTSLTTAGEIISMQTTLSFAQSTNPSMEGSSTAVATFLSMLGL 133
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
+ D HH A+VKSY P + + + + V + +F + ++L++P + F
Sbjct: 134 TLVMATDLHHLFIAAIVKSYTIFPFTRAVPVNDAAALAVQTVAQSFSLGVQLAAPVIVFS 193
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+VFN++ GL+ +++P I+F+++P + LG L LS+ I ++ +
Sbjct: 194 LVFNLATGLVGRIMPAFQIFFVASPLSVILGLSLLALSLSGIAMVWTDRYRELL 247
>gi|254503465|ref|ZP_05115616.1| Bacterial export protein, family 1 [Labrenzia alexandrii DFL-11]
gi|222439536|gb|EEE46215.1| Bacterial export protein, family 1 [Labrenzia alexandrii DFL-11]
Length = 258
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 1/239 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
++++ FL+ CR+G+C+M++PG + IPM+VRL A S+ L P L I
Sbjct: 13 SSLVLATFLLFCRIGACLMVIPGFGSNRIPMRVRLFVAFGISLALSPLLVPDIQQALPDE 72
Query: 66 RAYYS-KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ EL G G L R++ L+ +++S AIGL+ M I A P+
Sbjct: 73 ALGTVSFFIGAELLTGLFIGFLGRIFIAALETLTTLVSMAIGLSNMPGMPIDGVDALPPV 132
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
+L + +++ D H ++ LV+SY IP G+ L F L TF++ LR
Sbjct: 133 ANLFTLTATAMIFIADQHWEILRGLVQSYEVIPPGRPLAAMASLEQFAEQLARTFVLALR 192
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ SPF+ + IV N+++GL+NKL PQIP+YFIS P++I G FL L + F +
Sbjct: 193 VVSPFIVYTIVVNLAVGLINKLTPQIPVYFISLPFVIAGGLYFLYLVAAEAIMIFLDGY 251
>gi|212709500|ref|ZP_03317628.1| hypothetical protein PROVALCAL_00542 [Providencia alcalifaciens DSM
30120]
gi|212687838|gb|EEB47366.1| hypothetical protein PROVALCAL_00542 [Providencia alcalifaciens DSM
30120]
Length = 259
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R + P + +VR+ A +V+ P L T + A
Sbjct: 12 WLSQGFYPFVRFLALFGTAPFFNEKQAISKVRIALAFFTVLVISPQLPITT---IPLFSA 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + ++ +G GL +++ ++ G VI +GL+ T + L +
Sbjct: 69 MGLWVTVQQIVIGAAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +I LL D H + Y L S+ +PI + F F+ T F+ L L+
Sbjct: 129 LNLITLLLFLSFDGHLWLIYILTNSFELLPIQTTPLHRDGFWIFLQFANTIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
PF+ +++ N+S+G+LN++ PQ+ ++ + P + +G L L I I+ F
Sbjct: 189 PFITLFLILNLSLGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYTERLIHQAF 248
>gi|323977869|gb|EGB72955.1| flagellar biosynthetic protein FliR [Escherichia coli TW10509]
Length = 261
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|260853446|ref|YP_003227337.1| putative lateral flagellar export pore protein [Escherichia coli
O26:H11 str. 11368]
gi|300817292|ref|ZP_07097510.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1]
gi|307315218|ref|ZP_07594797.1| flagellar biosynthetic protein FliR [Escherichia coli W]
gi|331666525|ref|ZP_08367399.1| flagellar biosynthetic protein FliR [Escherichia coli TA271]
gi|257752095|dbj|BAI23597.1| predicted lateral flagellar export pore protein [Escherichia coli
O26:H11 str. 11368]
gi|300530268|gb|EFK51330.1| flagellar biosynthetic protein FliR [Escherichia coli MS 107-1]
gi|306905399|gb|EFN35936.1| flagellar biosynthetic protein FliR [Escherichia coli W]
gi|315059467|gb|ADT73794.1| Flagellar biosynthetic protein fliR [Escherichia coli W]
gi|323158015|gb|EFZ44116.1| flagellar biosynthetic protein FliR [Escherichia coli EPECa14]
gi|323171039|gb|EFZ56688.1| flagellar biosynthetic protein FliR [Escherichia coli LT-68]
gi|323181525|gb|EFZ66945.1| flagellar biosynthetic protein FliR [Escherichia coli 1357]
gi|323379975|gb|ADX52243.1| flagellar biosynthetic protein FliR [Escherichia coli KO11]
gi|331065749|gb|EGI37633.1| flagellar biosynthetic protein FliR [Escherichia coli TA271]
Length = 260
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLISLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|329888174|ref|ZP_08266772.1| flagellar biosynthetic protein FliR [Brevundimonas diminuta ATCC
11568]
gi|328846730|gb|EGF96292.1| flagellar biosynthetic protein FliR [Brevundimonas diminuta ATCC
11568]
Length = 256
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 114/237 (48%), Gaps = 1/237 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + LI RVG+ +MLLPG SY+P +VRL A+ S+ L P + ++ A
Sbjct: 10 VWAGGLIFARVGAILMLLPGFGESYVPPRVRLSLALVLSLALWPIVGASLPALPATLGAT 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
VM E+ G G ++R + L G ++S L + + T L++ +
Sbjct: 70 -VGWVMREVLTGLAIGAILRSFMTALTTAGEIVSLQTTLGFSQTANPLQAQPGTTLSAFL 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++G+ ++ + HH +V SY I + L + V L +FM+ ++L++P
Sbjct: 129 MLLGVTLVFATNTHHLFIGGMVGSYEAIAPAKPLIVSDFTQMAVKTLSQSFMLGVQLAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
L F ++FN++ GL+ +++P +YF + P + LG LS+ ++ F +
Sbjct: 189 VLVFALIFNLASGLVARVMPSFQVYFAAAPLSVILGLSVFTLSLGVVGTVFIDRYRS 245
>gi|300822280|ref|ZP_07102421.1| flagellar biosynthetic protein FliR [Escherichia coli MS 119-7]
gi|300525163|gb|EFK46232.1| flagellar biosynthetic protein FliR [Escherichia coli MS 119-7]
gi|309702239|emb|CBJ01556.1| flagellar biosynthesis protein FliR [Escherichia coli ETEC H10407]
gi|323937220|gb|EGB33500.1| flagellar biosynthetic protein FliR [Escherichia coli E1520]
Length = 261
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFSAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + L ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|285018168|ref|YP_003375879.1| flagellar biosynthetic protein flir [Xanthomonas albilineans GPE
PC73]
gi|283473386|emb|CBA15891.1| probable flagellar biosynthetic protein flir [Xanthomonas
albilineans]
Length = 263
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R+G+ +M++P + IP ++R+ A ++ L P L D F
Sbjct: 16 AMIGAILWTMLRIGAMLMVMPLVGTRAIPARIRVILAATLAMALAPLLPPVPDWNGFD-- 73
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A V EL +G G ++R+ G +IS + GL + +
Sbjct: 74 ATVVLSVARELAVGASMGFMLRMIFEAGAMAGEMISQSTGLGFAQMADPLRGVNSGVIGQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
+ L + + H V LV SY +PIG L + + + L L
Sbjct: 134 WFYLAFGLLFFTANGHLAVVALLVDSYKALPIGSALPDAQAMITVAPDFFMSMMRGALTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N++ G L K P + I P + LG L + + + F
Sbjct: 194 ALPVIVAMLAVNLAFGALAKAAPALNPIQIGLPVAMVLGLALLAILVNEMGPPVQRLFDA 253
Query: 246 GF 247
F
Sbjct: 254 AF 255
>gi|307293816|ref|ZP_07573660.1| flagellar biosynthetic protein FliR [Sphingobium chlorophenolicum
L-1]
gi|306879967|gb|EFN11184.1| flagellar biosynthetic protein FliR [Sphingobium chlorophenolicum
L-1]
Length = 260
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 93/242 (38%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E+ + + + R G+ + P +P+Q+RL ++A + L + + +
Sbjct: 10 EVQLWIWLIAMIRPGAAFIAAPVFGAPAVPLQLRLILSLALGMAALNSVHIVLPADGVAS 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
LV E+ G G +++ G I +GLN + S A +
Sbjct: 70 -FQGVMLVAGEVLAGLAIGFAVQIGYAAALVAGEAIGNTMGLNFAAMVDPSSGQATQAVG 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I+ L +D H + +V+SY +P G + + + L +
Sbjct: 129 QFLSILSTFLLLAMDGHLMLVSFVVQSYQALPPGGAMLGNDAIWHLIEFGGALLGAGLTI 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F ++ I +G+L + P + ++ + P + G + L ++ ++ + +
Sbjct: 189 ALPVGFALVLVQIVMGMLARTAPALNLFSVGMPVALMAGLILLAVTAPVMGEGITAALKA 248
Query: 246 GF 247
G
Sbjct: 249 GL 250
>gi|299068760|emb|CBJ40000.1| FliR: flagellar biosynthesis inner membrane protein. fliR/mopE/spaR
family [Ralstonia solanacearum CMR15]
Length = 262
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV + I + P + + IP +++ F + ++ L P L +
Sbjct: 11 GWIALYWWPLVRVLAFIAVAPPFANTEIPTSIKVAFGVVLTVALAPMLPVPSGIAVGSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G G+ +++ + G ++S IGL T + + + L
Sbjct: 71 GLWITLL--QVAIGMALGVCVQMVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I + + A D H + +AL S+ +P+ G + + F + +R++
Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTALPVSAAPLAGGGWQTLAGGGAAVFALAVRIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ +L++ + + + + +G + + + + + S +
Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMNA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|218554530|ref|YP_002387443.1| flagellar biosynthesis protein FliR [Escherichia coli IAI1]
gi|218689945|ref|YP_002398157.1| flagellar biosynthesis protein FliR [Escherichia coli ED1a]
gi|301018200|ref|ZP_07182715.1| flagellar biosynthetic protein FliR [Escherichia coli MS 69-1]
gi|301644591|ref|ZP_07244580.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1]
gi|218361298|emb|CAQ98882.1| flagellar export pore protein [Escherichia coli IAI1]
gi|218427509|emb|CAR08404.2| flagellar export pore protein [Escherichia coli ED1a]
gi|300399787|gb|EFJ83325.1| flagellar biosynthetic protein FliR [Escherichia coli MS 69-1]
gi|301077066|gb|EFK91872.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1]
Length = 261
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|183598642|ref|ZP_02960135.1| hypothetical protein PROSTU_02046 [Providencia stuartii ATCC 25827]
gi|188020825|gb|EDU58865.1| hypothetical protein PROSTU_02046 [Providencia stuartii ATCC 25827]
Length = 260
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + P + +VR+ A +++ P L + + A
Sbjct: 12 WLSQGFYPFIRLLALFGTAPFFNEKQSITKVRVILAFFIILIVSPQLP---VVNIPLFSA 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+++ ++ +G GL +++ ++ G VI +GL+ T + L +
Sbjct: 69 MGLWVIVQQIVIGVAIGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +I LL D H + Y L+ S+ IPI + F S + F+ L L+
Sbjct: 129 LNLIMLLLFLSFDGHLWLIYILIHSFELIPIQVSPLSRDGFWSLAQFASSIFINGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
PF+ +++ N+++G+LN++ PQ+ ++ + P + +G L L I I+ F
Sbjct: 189 PFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGLIISILPRYSERLIHQAF 248
>gi|16129897|ref|NP_416460.1| flagellar export pore protein [Escherichia coli str. K-12 substr.
MG1655]
gi|89108782|ref|AP_002562.1| flagellar export pore protein [Escherichia coli str. K-12 substr.
W3110]
gi|170081594|ref|YP_001730914.1| flagellar export pore protein [Escherichia coli str. K-12 substr.
DH10B]
gi|238901155|ref|YP_002926951.1| flagellar export pore protein [Escherichia coli BW2952]
gi|253773101|ref|YP_003035932.1| flagellar biosynthesis protein FliR [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|2506425|sp|P33135|FLIR_ECOLI RecName: Full=Flagellar biosynthetic protein fliR
gi|1736616|dbj|BAA15775.1| flagellar export pore protein [Escherichia coli str. K12 substr.
W3110]
gi|1788261|gb|AAC75017.1| flagellar export pore protein [Escherichia coli str. K-12 substr.
MG1655]
gi|169889429|gb|ACB03136.1| flagellar export pore protein [Escherichia coli str. K-12 substr.
DH10B]
gi|238861104|gb|ACR63102.1| flagellar export pore protein [Escherichia coli BW2952]
gi|253324145|gb|ACT28747.1| flagellar biosynthetic protein FliR [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448937|gb|ACX39359.1| flagellar biosynthetic protein FliR [Escherichia coli DH1]
gi|315136587|dbj|BAJ43746.1| flagellar biosynthesis protein FliR [Escherichia coli DH1]
Length = 261
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|118589958|ref|ZP_01547362.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614]
gi|118437455|gb|EAV44092.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614]
Length = 258
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 74/243 (30%), Positives = 129/243 (53%), Gaps = 1/243 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ +++++FL+ CR+G+C+M++PG + +P+ VRL A++ ++ L P L +
Sbjct: 9 STFSSSLLLAVFLLFCRIGACLMVIPGFGSNRVPVHVRLFIALSVALALSPLLAPGVQAS 68
Query: 62 NFVNR-AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + EL G G L R++ L+ +++S AIGL+ M I +
Sbjct: 69 LPDEQLGTVAGFIGAELLTGAFIGFLGRIFLAALETLTTLVSMAIGLSNMPGMPIDGVDS 128
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
P+ +L + +++ + H ++ L SY IP+GQ L F L TF+
Sbjct: 129 LPPVANLFTVTATAMVFITNQHWEILRGLAASYEAIPVGQPLAAVTGLEQFAEQLAKTFL 188
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ LR+ SPF+ + +V N ++GL+NKL PQIP+YFIS P++I G FL L I + F
Sbjct: 189 LALRVCSPFIVYTVVVNFAVGLVNKLTPQIPVYFISMPFVIAGGLYFLYLVIAEAIMIFL 248
Query: 241 HSF 243
+
Sbjct: 249 DGY 251
>gi|91223203|ref|ZP_01258469.1| putative flagellar biosynthetic protein FliR [Vibrio alginolyticus
12G01]
gi|91192016|gb|EAS78279.1| putative flagellar biosynthetic protein FliR [Vibrio alginolyticus
12G01]
Length = 258
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 102/237 (43%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
I+ L+ RVG+ + +P + IP+ VR A++ ++ P + ++ F
Sbjct: 9 SAILGQLWWPFFRVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G VIS +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAIWGVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I L ++ H V +++S+ P+G + VN+ F L L
Sbjct: 127 RIFLIFSTLLFLALEGHLLVIDIVIQSFVVWPVGSGI-TSLSLQGVVNIFGWMFASSLAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYTAL 242
>gi|124265770|ref|YP_001019774.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
gi|124258545|gb|ABM93539.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
Length = 256
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 103/244 (42%), Gaps = 5/244 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + RV + + P LSM +P++V++ A +I L + ++
Sbjct: 11 AWLSPMVWPFLRVLALFISAPVLSMRSVPVRVKVALAFFITIAAQASLPPMPVIA--LDS 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + V+ +L +G G R+ G++F G +I +GLN + T ++
Sbjct: 69 AQAFEAVIQQLVIGLALGFSARIVMAGIEFAGEMIGLQMGLNFAAFFDPISASQSTAVSR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN---MLQTTFMIML 183
G V++ H + A+++S+ P+ F S + F + L
Sbjct: 129 FFGTSAAWLFVVMNGHLLLTAAVIQSFHAFPVATPEAAPLAFLSALQPQLWGAEVFRLGL 188
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ P + + N+ +GL++++ QI I+ I P +G+G + + L++ + F+ +
Sbjct: 189 WIALPIITMLLFMNLVLGLISRVASQINIFAIGFPITLGVGLVGITLTLPFMEQPFTMAL 248
Query: 244 LYGF 247
Sbjct: 249 ERML 252
>gi|194429944|ref|ZP_03062454.1| flagellar biosynthetic protein FliR [Escherichia coli B171]
gi|194412033|gb|EDX28345.1| flagellar biosynthetic protein FliR [Escherichia coli B171]
gi|323158571|gb|EFZ44585.1| flagellar biosynthetic protein FliR [Escherichia coli E128010]
Length = 261
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGRLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|114566402|ref|YP_753556.1| flagellar biosynthetic protein FliR [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337337|gb|ABI68185.1| flagellar biosynthetic protein FliR [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 253
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 1/239 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ S F ++ R+ + P S +P +VR + + L F+ +N
Sbjct: 5 LESFFFLLARLSGLFITAPIFSSRMMPGRVRALIVIMLAATLAYFVPVEYS-RNINTPGL 63
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + VE+F+G G +I +Q +G ++ +G ++ + + +
Sbjct: 64 FIAALAVEIFIGYTIGFVIYAVLATIQLSGQLMDMLMGFSIVNVVDPQSGTQIPLMGNFT 123
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ LL ID HH + AL +SY +P+ G V + F++ +++++P
Sbjct: 124 QALALLTYLAIDGHHYLLQALAQSYAIVPVMSAHLPGGFLELLVEVGTYIFVVAVKIAAP 183
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L + ++++G + + VPQ+ ++ + P I LG + L L + I ++ ++ F F
Sbjct: 184 MLVAILTSDVAMGFIARTVPQMNVFLVGLPLKIFLGLITLLLLLPIYLWVYNVLFAEFF 242
>gi|327254529|gb|EGE66145.1| flagellar biosynthetic protein FliR [Escherichia coli STEC_7v]
Length = 260
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLIFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|306813327|ref|ZP_07447520.1| flagellar biosynthetic protein FliR [Escherichia coli NC101]
gi|305854090|gb|EFM54529.1| flagellar biosynthetic protein FliR [Escherichia coli NC101]
Length = 260
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 98/235 (41%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + +VR+ ++A +I++ P + + +
Sbjct: 12 LALGLWFPFVRIMAFLRYMPVLDNSALTARVRIILSLALAIIITPLIPHPVPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|218703504|ref|YP_002411023.1| Flagellar biosynthetic protein fliR [Escherichia coli UMN026]
gi|293403335|ref|ZP_06647426.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298378946|ref|ZP_06988827.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302]
gi|300898062|ref|ZP_07116431.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1]
gi|59889760|emb|CAH19115.1| Lateral flagellar export/assembly protein (FliR-like) [Escherichia
coli]
gi|218430601|emb|CAR11467.1| Flagellar biosynthetic protein fliR [Escherichia coli UMN026]
gi|284920024|emb|CBG33080.1| flagellar biosynthetic protein [Escherichia coli 042]
gi|291429188|gb|EFF02208.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298280059|gb|EFI21563.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302]
gi|300358240|gb|EFJ74110.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1]
Length = 260
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + +G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLVGLVCFATLLYNLPDHYLHL 243
>gi|82543589|ref|YP_407536.1| flagellar biosynthesis protein FliR [Shigella boydii Sb227]
gi|81245000|gb|ABB65708.1| flagellar biosynthesis [Shigella boydii Sb227]
gi|332096912|gb|EGJ01901.1| flagellar biosynthetic protein FliR [Shigella boydii 3594-74]
Length = 261
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + V+ P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|261313959|ref|ZP_05953156.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Brucella
pinnipedialis M163/99/10]
gi|261302985|gb|EEY06482.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Brucella
pinnipedialis M163/99/10]
Length = 255
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 73/219 (33%), Positives = 128/219 (58%), Gaps = 1/219 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGEG 228
>gi|323975951|gb|EGB71045.1| flagellar biosynthetic protein FliR [Escherichia coli TW10509]
Length = 260
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + M+VR+ ++A +I++ P + I +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTMRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHM 243
>gi|254478864|ref|ZP_05092228.1| flagellar biosynthetic protein FliR [Carboxydibrachium pacificum
DSM 12653]
gi|214035177|gb|EEB75887.1| flagellar biosynthetic protein FliR [Carboxydibrachium pacificum
DSM 12653]
Length = 260
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 101/236 (42%), Gaps = 3/236 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ +L P ++P ++ S+++ + + + N
Sbjct: 11 VQVFILLFVRMLGIFILAPFFGTKHVPTVFKIGLGFFTSLIVFDVMP--LVPISIDNVLT 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LV+ E +G GL + + G +I +G L + I + + I
Sbjct: 69 YFLLVISEFLVGLTIGLASMISFSAVYLAGQLIDYQLGFGLVNILDIHSEAQVPLMGNFI 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ +L +++ H+ +F L KS IPIG+ + + M+ F I R+S+
Sbjct: 129 YIMTILIFMLMNGHYLLFTFLAKSTEIIPIGKVYFDLSGMSQVLTKMVSDMFAIGFRISA 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + ++ ++ +G++++ +PQ+ ++ + P + +G L + + + + F
Sbjct: 189 PIILTTVLTDLILGIISRTIPQLNVFMVGMPAKVFVGIFTLIIMLPMYLTIVDFIF 244
>gi|17548594|ref|NP_521934.1| flagellar biosynthetic fliR transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17430842|emb|CAD17524.1| probable flagellar biosynthetic flir transmembrane protein
[Ralstonia solanacearum GMI1000]
Length = 262
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV + I + P + + IP +++ F + ++ L P L +
Sbjct: 11 GWIALYWWPLVRVLAFIAVAPPFANTEIPTSIKVAFGVVLTVALAPMLPVPAGISVGSYE 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ ++ +G G+ +++ + G ++S IGL T + + + L
Sbjct: 71 GLWITLL--QVAIGMALGVCVQMVFAAISGAGELMSIQIGLGFATLLDPQQTESSLLLGR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I + + A D H + +AL S+ +P+ G + + F + +R++
Sbjct: 129 FISLTAITAFIAGDGHLVLMHALFDSFTVLPVSAAPLAGGGWQTLAGGGAAVFALAVRIA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + +V N++ +L++ + + + + +G + + + + + S +
Sbjct: 189 LPIIAIMMVVNLAFAVLSRTAQALNPFAVGIAATLVVGLMLVMVMMTSLAPVVERSVMNA 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|307636862|gb|ADN79312.1| flagellar biosynthesis protein [Helicobacter pylori 908]
gi|325995451|gb|ADZ50856.1| Flagellar biosynthesis protein [Helicobacter pylori 2018]
gi|325997049|gb|ADZ49257.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
Length = 255
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+G+ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKDEISLAF 248
>gi|294013057|ref|YP_003546517.1| flagellar biosynthetic protein FliR [Sphingobium japonicum UT26S]
gi|292676387|dbj|BAI97905.1| flagellar biosynthetic protein FliR [Sphingobium japonicum UT26S]
Length = 260
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 93/242 (38%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E+ + + + R G+ + P +P+Q+RL ++A + L + + +
Sbjct: 10 EVQLWIWLIAMIRPGAAFIAAPVFGAPAVPLQLRLILSLALGMAALNSVHIVLPADGVAS 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
LV E+ G G +++ G I +GLN + S A +
Sbjct: 70 -FQGVMLVAGEVLAGLAIGFAVQIGYAAALVAGEAIGNTMGLNFAAMVDPSSGQATQAVG 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I+ L +D H + +V+SY +P G + + + + +
Sbjct: 129 QFLSILSTFLLLAMDGHLMLVSFVVQSYQALPPGGAMLSNDAVWHLIEFGGALLGAGVTI 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F ++ I +G+L + P + ++ + P + G + L ++ I+ + +
Sbjct: 189 ALPVGFALVLVQIVMGMLARTAPALNLFSVGMPVALMAGLILLAVTAPIMGEGITAALKA 248
Query: 246 GF 247
G
Sbjct: 249 GL 250
>gi|192359985|ref|YP_001982206.1| flagellar biosynthetic protein FliR [Cellvibrio japonicus Ueda107]
gi|190686150|gb|ACE83828.1| flagellar biosynthetic protein FliR [Cellvibrio japonicus Ueda107]
Length = 261
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 92/240 (38%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+G+ +P + +P ++RL + +L+P L +
Sbjct: 13 QFIGQYIWPMLRIGAFYFAVPVIGARTVPARIRLILMLLTVFLLVPVLPPAPVVSLLSLA 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ E+ +G G ++V G I+ +GL S ++ T L+
Sbjct: 73 G--LMLIAQEVLIGLALGFTMQVVLHVFVLAGQYIAMKMGLGFAAMNDPSSGVSVTVLSQ 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ L + H V ++ S+ PIG + + + V M F L ++
Sbjct: 131 FYLLLSTLLFLSTNGHLVVLQLMIDSFRFFPIGGDGISTSAYMVIVQMGSWMFSAALLIA 190
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P ++ N+S G++++ PQ+ ++ + P + G + S+ + + G
Sbjct: 191 LPLFTSLMIVNMSFGVMSRAAPQMNVFTVGFPITLVFGLALMYFSLGNFLPLYMELMEEG 250
>gi|162147443|ref|YP_001601904.1| flagellar biosynthetic protein fliR [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786020|emb|CAP55602.1| putative flagellar biosynthetic protein fliR [Gluconacetobacter
diazotrophicus PAl 5]
Length = 270
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 3/238 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD---TIDLQNF 63
++ +++CRV + +M PGL + PM+VR A++ ++ +LP + D +
Sbjct: 14 VLATMFLVVLCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRLVEVSGTAL 73
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
+ +V+ EL G G L R+ T+ + V++ GL + T
Sbjct: 74 RMPSVAIAVVVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGLASVLQPDSELGASSTA 133
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
++ + ++ + + A+ SY P G G++ S TF + L
Sbjct: 134 ISHMASMLIPVIFLSTGLYALPLAAITGSYSLFPPGHMPMVGDMARSVTEATSQTFALAL 193
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+L++PF+ ++ +G+LN+L+P I +Y I+ P + G + L + I+++ +
Sbjct: 194 QLAAPFVLIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLIQVMTGVWQE 251
>gi|300940405|ref|ZP_07154990.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1]
gi|306814227|ref|ZP_07448393.1| flagellar biosynthesis protein FliR [Escherichia coli NC101]
gi|331657996|ref|ZP_08358958.1| flagellar biosynthetic protein FliR [Escherichia coli TA206]
gi|300454799|gb|EFK18292.1| flagellar biosynthetic protein FliR [Escherichia coli MS 21-1]
gi|305852386|gb|EFM52837.1| flagellar biosynthesis protein FliR [Escherichia coli NC101]
gi|331056244|gb|EGI28253.1| flagellar biosynthetic protein FliR [Escherichia coli TA206]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|268679050|ref|YP_003303481.1| flagellar biosynthetic protein FliR [Sulfurospirillum deleyianum
DSM 6946]
gi|268617081|gb|ACZ11446.1| flagellar biosynthetic protein FliR [Sulfurospirillum deleyianum
DSM 6946]
Length = 257
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ FL+ R+ P S + IP+ ++ + L P L +N
Sbjct: 10 EHHVILFFLLFARLSGVFAFFPFFSHANIPLSIKTSITFFMVVFLFPLLSPLHVTPTLLN 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ EL +G + GL + + LQ G IS +G + + + S + L+
Sbjct: 70 ---LTLAIVSELLIGFIAGLFLTIALSILQMAGMQISFVMGFTMASVVDPQTSTSIPVLS 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ +IGL+ + + HHQ+ +V S +P+G ++ + F+ L
Sbjct: 127 QIFSLIGLMIVLAFNGHHQMLLFIVDSLSLLPLGTFYPEMSVVGYILKATTGMFVYGFIL 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S P L F ++ ++ G+L K +PQ + + P I + + + +++ + F F+
Sbjct: 187 SFPVLAFSLLMDVVFGMLMKTMPQFNLLVVGFPIRIAVSLVVIIVTLASTMLLFKREFME 246
Query: 246 G 246
Sbjct: 247 A 247
>gi|26248219|ref|NP_754259.1| flagellar biosynthesis protein FliR [Escherichia coli CFT073]
gi|110642056|ref|YP_669786.1| flagellar biosynthesis protein FliR [Escherichia coli 536]
gi|191173327|ref|ZP_03034857.1| flagellar biosynthetic protein FliR [Escherichia coli F11]
gi|215487150|ref|YP_002329581.1| flagellar biosynthesis protein FliR [Escherichia coli O127:H6 str.
E2348/69]
gi|227885621|ref|ZP_04003426.1| flagellar biosynthesis protein FliR [Escherichia coli 83972]
gi|237705909|ref|ZP_04536390.1| flagellar biosynthetic protein fliR [Escherichia sp. 3_2_53FAA]
gi|300975535|ref|ZP_07173046.1| flagellar biosynthetic protein FliR [Escherichia coli MS 45-1]
gi|300994265|ref|ZP_07180817.1| flagellar biosynthetic protein FliR [Escherichia coli MS 200-1]
gi|301050689|ref|ZP_07197550.1| flagellar biosynthetic protein FliR [Escherichia coli MS 185-1]
gi|312967147|ref|ZP_07781365.1| flagellar biosynthetic protein FliR [Escherichia coli 2362-75]
gi|331647544|ref|ZP_08348636.1| flagellar biosynthetic protein FliR [Escherichia coli M605]
gi|26108623|gb|AAN80826.1|AE016762_79 Flagellar biosynthetic protein fliR [Escherichia coli CFT073]
gi|110343648|gb|ABG69885.1| flagellar biosynthetic protein FliR [Escherichia coli 536]
gi|190906444|gb|EDV66053.1| flagellar biosynthetic protein FliR [Escherichia coli F11]
gi|215265222|emb|CAS09612.1| flagellar export pore protein [Escherichia coli O127:H6 str.
E2348/69]
gi|222033689|emb|CAP76430.1| flagellar biosynthetic protein fliR [Escherichia coli LF82]
gi|226900666|gb|EEH86925.1| flagellar biosynthetic protein fliR [Escherichia sp. 3_2_53FAA]
gi|227837194|gb|EEJ47660.1| flagellar biosynthesis protein FliR [Escherichia coli 83972]
gi|281179012|dbj|BAI55342.1| flagellar biosynthetic protein FliR [Escherichia coli SE15]
gi|300297612|gb|EFJ53997.1| flagellar biosynthetic protein FliR [Escherichia coli MS 185-1]
gi|300304930|gb|EFJ59450.1| flagellar biosynthetic protein FliR [Escherichia coli MS 200-1]
gi|300410304|gb|EFJ93842.1| flagellar biosynthetic protein FliR [Escherichia coli MS 45-1]
gi|307553963|gb|ADN46738.1| flagellar biosynthetic protein FliR [Escherichia coli ABU 83972]
gi|312288611|gb|EFR16513.1| flagellar biosynthetic protein FliR [Escherichia coli 2362-75]
gi|312946543|gb|ADR27370.1| flagellar biosynthesis protein FliR [Escherichia coli O83:H1 str.
NRG 857C]
gi|315286654|gb|EFU46087.1| flagellar biosynthetic protein FliR [Escherichia coli MS 110-3]
gi|315290267|gb|EFU49645.1| flagellar biosynthetic protein FliR [Escherichia coli MS 153-1]
gi|315296484|gb|EFU55781.1| flagellar biosynthetic protein FliR [Escherichia coli MS 16-3]
gi|323186706|gb|EFZ72028.1| flagellar biosynthetic protein FliR [Escherichia coli RN587/1]
gi|323956346|gb|EGB52089.1| flagellar biosynthetic protein FliR [Escherichia coli H263]
gi|324005851|gb|EGB75070.1| flagellar biosynthetic protein FliR [Escherichia coli MS 57-2]
gi|324013505|gb|EGB82724.1| flagellar biosynthetic protein FliR [Escherichia coli MS 60-1]
gi|330911756|gb|EGH40266.1| flagellar biosynthesis protein FliR [Escherichia coli AA86]
gi|331043268|gb|EGI15406.1| flagellar biosynthetic protein FliR [Escherichia coli M605]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|317010452|gb|ADU84199.1| flagellar biosynthesis protein FliR [Helicobacter pylori
SouthAfrica7]
Length = 255
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLDFSNATYTPES---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGAQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKDEISSAF 248
>gi|260466592|ref|ZP_05812780.1| flagellar biosynthetic protein FliR [Mesorhizobium opportunistum
WSM2075]
gi|259029598|gb|EEW30886.1| flagellar biosynthetic protein FliR [Mesorhizobium opportunistum
WSM2075]
Length = 250
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 85/245 (34%), Positives = 136/245 (55%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M++ + ++++ FL CR+G+C ML+PGLS + +P+QVRL A+A + LL FLWD I
Sbjct: 1 MSVLSQSVVIAAFLAFCRIGACFMLMPGLSSARVPVQVRLFVAVAATGGLLAFLWDKIFP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+++ EL +G + G + R+Y L+F GS I+ IG I +
Sbjct: 61 FVDARPQILVPMIISELLVGGLIGAMTRLYMEALRFMGSAIAMLIGYGGSGGPAIEEPEP 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L ++I LL L+V DF H++ ALV SY P+ N + + TF
Sbjct: 121 QAALAAIISFSALLMLFVFDFDHEIIRALVTSYTVAPVNIFFNPQAALVDVADTVSDTFF 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+++RL SPF+ + ++ N++IG +NKL PQIPIYFIS P++I G + +I ++ F
Sbjct: 181 LVIRLGSPFVAYALLVNLTIGFVNKLTPQIPIYFISQPFVIVGGMIIFYFAIGTMLSLFV 240
Query: 241 HSFLY 245
F+
Sbjct: 241 DGFVD 245
>gi|293410306|ref|ZP_06653882.1| flagellar biosynthetic protein FliR [Escherichia coli B354]
gi|331663446|ref|ZP_08364356.1| flagellar biosynthetic protein FliR [Escherichia coli TA143]
gi|291470774|gb|EFF13258.1| flagellar biosynthetic protein FliR [Escherichia coli B354]
gi|331059245|gb|EGI31222.1| flagellar biosynthetic protein FliR [Escherichia coli TA143]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|218887106|ref|YP_002436427.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758060|gb|ACL08959.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 264
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 103/237 (43%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+S L RV + LLP P QV+ + F++ L P + Q +
Sbjct: 9 ASMLSFLLTFMRVSLVLFLLPFFGGEAAPTQVKAALCLVFTLALWPHV-SLPGGQMPTHP 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ EL +G + G+ + G+Q G V++T +G + T + +
Sbjct: 68 FSLIVLLAGELIMGLMLGMTVHFLFAGIQTGGQVLATQMGFTMITLADPLTGANVSITSH 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L+ V+D H + A V+++ +P G L + + + + F++ ++++
Sbjct: 128 FLYMVAMLSFLVLDGHLYMLRAFVRTFELVPAGGLLLTPMLVKEVLALSGSMFVLAVKIA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+P L + +++ L+ + PQ+ + I P I +G F+ + I+ +
Sbjct: 188 APVLVSLFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFIGMLFTIMADKIREFI 244
>gi|256017857|ref|ZP_05431722.1| flagellar biosynthesis protein FliR [Shigella sp. D9]
gi|293446330|ref|ZP_06662752.1| flagellar biosynthetic protein FliR [Escherichia coli B088]
gi|332278883|ref|ZP_08391296.1| flagellar biosynthetic protein FliR [Shigella sp. D9]
gi|291323160|gb|EFE62588.1| flagellar biosynthetic protein FliR [Escherichia coli B088]
gi|332101235|gb|EGJ04581.1| flagellar biosynthetic protein FliR [Shigella sp. D9]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLTLLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|301646789|ref|ZP_07246643.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1]
gi|307136836|ref|ZP_07496192.1| flagellar biosynthetic protein FliR [Escherichia coli H736]
gi|301075024|gb|EFK89830.1| flagellar biosynthetic protein FliR [Escherichia coli MS 146-1]
gi|315616849|gb|EFU97466.1| flagellar biosynthetic protein FliR [Escherichia coli 3431]
Length = 260
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|347245|gb|AAC36861.1| fliR [Escherichia coli]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLAVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|91211168|ref|YP_541154.1| flagellar biosynthesis protein FliR [Escherichia coli UTI89]
gi|117624090|ref|YP_853003.1| flagellar biosynthesis protein FliR [Escherichia coli APEC O1]
gi|170679575|ref|YP_001743295.1| flagellar biosynthesis protein FliR [Escherichia coli SMS-3-5]
gi|191168278|ref|ZP_03030071.1| flagellar biosynthetic protein FliR [Escherichia coli B7A]
gi|193066372|ref|ZP_03047420.1| flagellar biosynthetic protein FliR [Escherichia coli E22]
gi|194439589|ref|ZP_03071662.1| flagellar biosynthetic protein FliR [Escherichia coli 101-1]
gi|209919372|ref|YP_002293456.1| flagellar biosynthesis protein FliR [Escherichia coli SE11]
gi|218558807|ref|YP_002391720.1| flagellar biosynthesis protein FliR [Escherichia coli S88]
gi|218705443|ref|YP_002412962.1| flagellar biosynthesis protein FliR [Escherichia coli UMN026]
gi|260844349|ref|YP_003222127.1| flagellar export pore protein FliR [Escherichia coli O103:H2 str.
12009]
gi|293405433|ref|ZP_06649425.1| flagellar biosynthetic protein fliR [Escherichia coli FVEC1412]
gi|298381077|ref|ZP_06990676.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302]
gi|300899207|ref|ZP_07117483.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1]
gi|300923887|ref|ZP_07139902.1| flagellar biosynthetic protein FliR [Escherichia coli MS 182-1]
gi|300931163|ref|ZP_07146510.1| flagellar biosynthetic protein FliR [Escherichia coli MS 187-1]
gi|301327737|ref|ZP_07220942.1| flagellar biosynthetic protein FliR [Escherichia coli MS 78-1]
gi|307312464|ref|ZP_07592098.1| flagellar biosynthetic protein FliR [Escherichia coli W]
gi|331673463|ref|ZP_08374231.1| flagellar biosynthetic protein FliR [Escherichia coli TA280]
gi|91072742|gb|ABE07623.1| flagellar biosynthetic protein FliR [Escherichia coli UTI89]
gi|115513214|gb|ABJ01289.1| flagellar biosynthetic protein FliR [Escherichia coli APEC O1]
gi|170517293|gb|ACB15471.1| flagellar biosynthetic protein FliR [Escherichia coli SMS-3-5]
gi|190901650|gb|EDV61406.1| flagellar biosynthetic protein FliR [Escherichia coli B7A]
gi|192925957|gb|EDV80603.1| flagellar biosynthetic protein FliR [Escherichia coli E22]
gi|194421498|gb|EDX37512.1| flagellar biosynthetic protein FliR [Escherichia coli 101-1]
gi|209912631|dbj|BAG77705.1| flagellar biosynthetic protein FliR [Escherichia coli SE11]
gi|218365576|emb|CAR03303.1| flagellar export pore protein [Escherichia coli S88]
gi|218432540|emb|CAR13433.1| flagellar export pore protein [Escherichia coli UMN026]
gi|257759496|dbj|BAI30993.1| flagellar export pore protein FliR [Escherichia coli O103:H2 str.
12009]
gi|284921858|emb|CBG34933.1| flagellar biosynthesis protein FliR [Escherichia coli 042]
gi|291427641|gb|EFF00668.1| flagellar biosynthetic protein fliR [Escherichia coli FVEC1412]
gi|294491448|gb|ADE90204.1| flagellar biosynthetic protein FliR [Escherichia coli IHE3034]
gi|298278519|gb|EFI20033.1| flagellar biosynthetic protein FliR [Escherichia coli FVEC1302]
gi|300357188|gb|EFJ73058.1| flagellar biosynthetic protein FliR [Escherichia coli MS 198-1]
gi|300419850|gb|EFK03161.1| flagellar biosynthetic protein FliR [Escherichia coli MS 182-1]
gi|300461020|gb|EFK24513.1| flagellar biosynthetic protein FliR [Escherichia coli MS 187-1]
gi|300845737|gb|EFK73497.1| flagellar biosynthetic protein FliR [Escherichia coli MS 78-1]
gi|306907635|gb|EFN38138.1| flagellar biosynthetic protein FliR [Escherichia coli W]
gi|307626574|gb|ADN70878.1| flagellar biosynthesis protein FliR [Escherichia coli UM146]
gi|315061250|gb|ADT75577.1| flagellar export pore protein [Escherichia coli W]
gi|320194337|gb|EFW68968.1| Flagellar biosynthesis protein FliR [Escherichia coli WV_060327]
gi|320198641|gb|EFW73241.1| Flagellar biosynthesis protein FliR [Escherichia coli EC4100B]
gi|323183934|gb|EFZ69321.1| flagellar biosynthetic protein FliR [Escherichia coli 1357]
gi|323378173|gb|ADX50441.1| flagellar biosynthetic protein FliR [Escherichia coli KO11]
gi|323948346|gb|EGB44333.1| flagellar biosynthetic protein FliR [Escherichia coli H120]
gi|323952443|gb|EGB48316.1| flagellar biosynthetic protein FliR [Escherichia coli H252]
gi|323961994|gb|EGB57593.1| flagellar biosynthetic protein FliR [Escherichia coli H489]
gi|323972750|gb|EGB67950.1| flagellar biosynthetic protein FliR [Escherichia coli TA007]
gi|324118999|gb|EGC12888.1| flagellar biosynthetic protein FliR [Escherichia coli E1167]
gi|331069661|gb|EGI41048.1| flagellar biosynthetic protein FliR [Escherichia coli TA280]
gi|332343676|gb|AEE57010.1| flagellar biosynthetic protein FliR [Escherichia coli UMNK88]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|300951575|ref|ZP_07165408.1| flagellar biosynthetic protein FliR [Escherichia coli MS 116-1]
gi|300956534|ref|ZP_07168816.1| flagellar biosynthetic protein FliR [Escherichia coli MS 175-1]
gi|300316634|gb|EFJ66418.1| flagellar biosynthetic protein FliR [Escherichia coli MS 175-1]
gi|300449202|gb|EFK12822.1| flagellar biosynthetic protein FliR [Escherichia coli MS 116-1]
gi|323940391|gb|EGB36582.1| flagellar biosynthetic protein FliR [Escherichia coli E482]
gi|332093093|gb|EGI98157.1| flagellar biosynthetic protein FliR [Shigella boydii 5216-82]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGVALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|293395591|ref|ZP_06639874.1| flagellar biosynthetic protein FliR [Serratia odorifera DSM 4582]
gi|291421910|gb|EFE95156.1| flagellar biosynthetic protein FliR [Serratia odorifera DSM 4582]
Length = 260
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F + RV + I P S I +V++ +++ P L +
Sbjct: 11 VWLSQYFWPLLRVLALIASAPVFSEKQISKKVKIGLGGLIVLLVAPSLPAN---NIAIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L M ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 68 ASGLWLAMQQILIGVALGLTMQFAFAAVRTAGEVIGMQMGLSFATFFDPSGGPNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ ++ LL D H + L S+ T+PI + GN F + F+ L L+
Sbjct: 128 LLNLLALLLFLAFDGHLWLISLLADSFHTLPIQAQPLNGNGFLALTQAGSLIFINGLMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+S+GLLN++ PQ+ ++ I P + +G L L L + ++ H F
Sbjct: 188 LPLICLLLTLNLSLGLLNRVTPQLSVFVIGFPVTMTIGILTLGLMMPMLAPFCEHLFGDV 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|240137265|ref|YP_002961734.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens
AM1]
gi|240007231|gb|ACS38457.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens
AM1]
Length = 256
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV-NRA 67
+ +FLI CR+G C++++PG S +P QVRL A S+ + P L +
Sbjct: 14 FLGVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAGGVSLAVTPLLLPLFQTKLLGQAPT 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E G + GLL R++ L+ + +ST +G + + A + SL
Sbjct: 74 ETLTWIASETVTGLLIGLLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + ++ D H ++F LV SYG IP G+ + + F + LR+++
Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYGRIPPGEGFGTQTALVRIADQIAEAFTLALRIAA 193
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
PF+ + + N++ G +NKL P IP+YF++TP+++ L L + QF +
Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFVATPFVMFGALLLLYTLSSEFMTQFLSGY 249
>gi|15802385|ref|NP_288411.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7
EDL933]
gi|15831943|ref|NP_310716.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str.
Sakai]
gi|168751879|ref|ZP_02776901.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4113]
gi|168758264|ref|ZP_02783271.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4401]
gi|168764424|ref|ZP_02789431.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4501]
gi|168771557|ref|ZP_02796564.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4486]
gi|168777377|ref|ZP_02802384.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4196]
gi|168783347|ref|ZP_02808354.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4076]
gi|168790290|ref|ZP_02815297.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC869]
gi|168802297|ref|ZP_02827304.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC508]
gi|195939256|ref|ZP_03084638.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str.
EC4024]
gi|208810191|ref|ZP_03252067.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4206]
gi|208816620|ref|ZP_03257740.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4045]
gi|208820873|ref|ZP_03261193.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4042]
gi|209399396|ref|YP_002271067.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4115]
gi|217328658|ref|ZP_03444739.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
TW14588]
gi|254793600|ref|YP_003078437.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str.
TW14359]
gi|260868543|ref|YP_003234945.1| flagellar export pore protein FliR [Escherichia coli O111:H- str.
11128]
gi|261227555|ref|ZP_05941836.1| flagellar export pore protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254621|ref|ZP_05947154.1| flagellar export pore protein FliR [Escherichia coli O157:H7 str.
FRIK966]
gi|291283127|ref|YP_003499945.1| Flagellar biosynthetic protein FliR [Escherichia coli O55:H7 str.
CB9615]
gi|331653362|ref|ZP_08354367.1| flagellar biosynthetic protein FliR [Escherichia coli M718]
gi|12516057|gb|AAG56965.1|AE005417_7 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933]
gi|13362157|dbj|BAB36112.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
Sakai]
gi|187767391|gb|EDU31235.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4196]
gi|188014181|gb|EDU52303.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4113]
gi|188999260|gb|EDU68246.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4076]
gi|189354885|gb|EDU73304.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4401]
gi|189359734|gb|EDU78153.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4486]
gi|189365568|gb|EDU83984.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4501]
gi|189370195|gb|EDU88611.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC869]
gi|189375691|gb|EDU94107.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC508]
gi|208724707|gb|EDZ74414.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4206]
gi|208730963|gb|EDZ79652.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4045]
gi|208740996|gb|EDZ88678.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4042]
gi|209160796|gb|ACI38229.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
EC4115]
gi|209766768|gb|ACI81696.1| flagellar biosynthetic protein FliR [Escherichia coli]
gi|209766770|gb|ACI81697.1| flagellar biosynthetic protein FliR [Escherichia coli]
gi|209766772|gb|ACI81698.1| flagellar biosynthetic protein FliR [Escherichia coli]
gi|209766774|gb|ACI81699.1| flagellar biosynthetic protein FliR [Escherichia coli]
gi|209766776|gb|ACI81700.1| flagellar biosynthetic protein FliR [Escherichia coli]
gi|217318005|gb|EEC26432.1| flagellar biosynthetic protein FliR [Escherichia coli O157:H7 str.
TW14588]
gi|254593000|gb|ACT72361.1| flagellar export pore protein [Escherichia coli O157:H7 str.
TW14359]
gi|257764899|dbj|BAI36394.1| flagellar export pore protein FliR [Escherichia coli O111:H- str.
11128]
gi|290763000|gb|ADD56961.1| Flagellar biosynthetic protein FliR [Escherichia coli O55:H7 str.
CB9615]
gi|320191924|gb|EFW66571.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str.
EC1212]
gi|320641798|gb|EFX11186.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str.
G5101]
gi|320647157|gb|EFX15990.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H- str.
493-89]
gi|320652441|gb|EFX20739.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H- str.
H 2687]
gi|320658043|gb|EFX25805.1| flagellar biosynthesis protein FliR [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658615|gb|EFX26309.1| flagellar biosynthesis protein FliR [Escherichia coli O55:H7 str.
USDA 5905]
gi|323174670|gb|EFZ60290.1| flagellar biosynthetic protein FliR [Escherichia coli LT-68]
gi|323180797|gb|EFZ66337.1| flagellar biosynthetic protein FliR [Escherichia coli 1180]
gi|326342361|gb|EGD66142.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str.
1044]
gi|326344865|gb|EGD68612.1| Flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str.
1125]
gi|331049460|gb|EGI21532.1| flagellar biosynthetic protein FliR [Escherichia coli M718]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|300904840|ref|ZP_07122666.1| flagellar biosynthetic protein FliR [Escherichia coli MS 84-1]
gi|301304255|ref|ZP_07210370.1| flagellar biosynthetic protein FliR [Escherichia coli MS 124-1]
gi|300403267|gb|EFJ86805.1| flagellar biosynthetic protein FliR [Escherichia coli MS 84-1]
gi|300840512|gb|EFK68272.1| flagellar biosynthetic protein FliR [Escherichia coli MS 124-1]
gi|315257218|gb|EFU37186.1| flagellar biosynthetic protein FliR [Escherichia coli MS 85-1]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + L ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|256831233|ref|YP_003159961.1| flagellar biosynthetic protein FliR [Desulfomicrobium baculatum DSM
4028]
gi|256580409|gb|ACU91545.1| flagellar biosynthetic protein FliR [Desulfomicrobium baculatum DSM
4028]
Length = 259
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 100/239 (41%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ ++ + R+ + L+P +P + + ++ L P L I Q +
Sbjct: 10 VFLTFLFALMRISLILFLMPFFGGQTLPATAKAALCLTLTLALWPRL-PLIGAQMPSHPF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + EL LG + G++IR +Q G +I +G + + +E
Sbjct: 69 ALAVMFGAELLLGLILGMVIRFVFAAIQTGGQLIGFQMGFAMVNVVDPDSGASEAVTAHF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL I+ H + L+KS+ +P G L + + F++ +++ +
Sbjct: 129 MYMVSLLTFLSINGHLYLLSGLMKSFDLLPPGSILISPRLTDQIFALSGQIFVLAIQIGA 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ ++++ L+++ PQ+ + I P I +G LFL + EII
Sbjct: 189 PVIAAILLVDLALALISRASPQMNVLIIGFPIKISVGFLFLGIIFEIISLHMEGFVSRM 247
>gi|304398867|ref|ZP_07380737.1| flagellar biosynthetic protein FliR [Pantoea sp. aB]
gi|304353571|gb|EFM17948.1| flagellar biosynthetic protein FliR [Pantoea sp. aB]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 104/241 (43%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + P L+ I +V++ A+ + +++P L + +
Sbjct: 11 HWVSQFFWPLVRIMALFATAPILNERSISKRVKIGLAVMITWLVMPLLPA---VNVTLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ ++ +G G ++ ++ G VI +G++ T L L
Sbjct: 68 PPGFLLLIQQMLIGIALGFTMQFAFAAVRLAGEVIGLQMGISFATFFDPGSRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L + H + LV S+ T+PIG E N F + V F+ + L+
Sbjct: 128 FLDMLAMLLFLSFNGHLWLISLLVDSFHTLPIGGEPINANAFMALVKSGGLIFLNGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+ +GLLN++ PQ+ I+ I P + +G L + L + ++ F
Sbjct: 188 LPLIVLLLMVNLVLGLLNRVSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCERLFGEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|293415260|ref|ZP_06657903.1| flagellar biosynthetic protein FliR [Escherichia coli B185]
gi|291432908|gb|EFF05887.1| flagellar biosynthetic protein FliR [Escherichia coli B185]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|94986974|ref|YP_594907.1| flagellar biosynthesis pathway, component FliR [Lawsonia
intracellularis PHE/MN1-00]
gi|94731223|emb|CAJ54586.1| Flagellar biosynthesis pathway, component FliR [Lawsonia
intracellularis PHE/MN1-00]
Length = 262
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 1/228 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +S L R+ + +LP S+ P ++ A+ +IVL L Q +
Sbjct: 10 MFLSFLLTFLRISVVLFMLPFFSIDGFPNMLKASIALILTIVLWGRL-SLSGTQMPAHPF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ E+FLG V GL + + G+Q G +++T +G + T +
Sbjct: 69 DLVLLIISEVFLGIVLGLAVNFFFAGIQAGGEILATQMGFTMITLADPLTGNTTGFIAHF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ L ++ H + A ++ +P G + + S +NM F+ L +++
Sbjct: 129 LYMVATLVFLALNGHLFLIKAFTYTFKMVPAGGLVVREILLSELLNMAGMIFVFALHVAA 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
P + + IS+GL+ + PQI I + P IG+G F+ L I+
Sbjct: 189 PVMSALFLVEISLGLMARAAPQIHIMEVGFPVKIGVGFFFIGLLFTIL 236
>gi|74312490|ref|YP_310909.1| flagellar biosynthesis protein FliR [Shigella sonnei Ss046]
gi|73855967|gb|AAZ88674.1| flagellar biosynthesis [Shigella sonnei Ss046]
gi|320184488|gb|EFW59292.1| Flagellar biosynthesis protein FliR [Shigella flexneri CDC 796-83]
gi|323168929|gb|EFZ54609.1| flagellar biosynthetic protein FliR [Shigella sonnei 53G]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + V+ P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFVIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|210134371|ref|YP_002300810.1| flagellar biosynthesis protein FliR [Helicobacter pylori P12]
gi|210132339|gb|ACJ07330.1| flagellar biosynthetic protein [Helicobacter pylori P12]
Length = 255
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPES---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+G+ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|260866392|ref|YP_003232794.1| putative lateral flagellar export pore protein [Escherichia coli
O111:H- str. 11128]
gi|257762748|dbj|BAI34243.1| predicted lateral flagellar export pore protein [Escherichia coli
O111:H- str. 11128]
Length = 260
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLISLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTMEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|312973833|ref|ZP_07788005.1| flagellar biosynthetic protein FliR [Escherichia coli 1827-70]
gi|310332428|gb|EFP99663.1| flagellar biosynthetic protein FliR [Escherichia coli 1827-70]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ +Q G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVQTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|332095510|gb|EGJ00526.1| flagellar biosynthetic protein FliR [Shigella dysenteriae 155-74]
Length = 261
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + ++ H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLVAPFCEHLFSEMF 248
>gi|291558214|emb|CBL35331.1| Flagellar biosynthesis pathway, component FliR [Eubacterium siraeum
V10Sc8a]
Length = 262
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI+CRV P S S P+++R +A +++ + D
Sbjct: 14 FLGFLLIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGDIKY--EPTGIFM 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+M EL LG + G ++ + G +I GL++ +M + ++ ++
Sbjct: 72 MLFDMMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVSMPLFANVY 131
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +L ++ + H SY T+PIG ++ + V T + ++L++P
Sbjct: 132 YYMFILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLTLAVKLAAP 191
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + I +G+L K VP I I+ ++ + +G + + + +
Sbjct: 192 IIAIEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLIMAQPMSDFIEKLMDIM 249
>gi|238924152|ref|YP_002937668.1| flagellar biosynthesis protein FliR [Eubacterium rectale ATCC
33656]
gi|238875827|gb|ACR75534.1| flagellar biosynthesis protein FliR [Eubacterium rectale ATCC
33656]
gi|291524885|emb|CBK90472.1| flagellar biosynthetic protein FliR [Eubacterium rectale DSM 17629]
gi|291529026|emb|CBK94612.1| flagellar biosynthetic protein FliR [Eubacterium rectale M104/1]
Length = 259
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/228 (21%), Positives = 101/228 (44%), Gaps = 3/228 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI+ R+ S + + P + +P +V+ + ++ + + ++V+ ++
Sbjct: 14 FLLILVRIASFVYIAPFFGDNAVPARVKTGLSAFVALFMYNII--ERPQLSYVSAVGFAV 71
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV+ E G + G + + F G++I IGL++ T S + T + +
Sbjct: 72 LVVKEGITGLLIGFAANICNSIVIFAGNLIDMDIGLSMATEFNPSMNSETTVTGNFYYYV 131
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
L+ L V D H + A+ S+ +P+G F N+ S+ + F+I R+ P
Sbjct: 132 VLVLLLVSDMHTYLIRAVCDSFSVVPLGGAQFQFDNMLSTMTKYMGDMFVIGFRIFLPVF 191
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++ N +G++ K+ PQ+ ++ + I G + L L + +I
Sbjct: 192 ACMMIMNCILGIMAKVAPQMNMFSVGIQLKIIAGFIVLFLIVYLIPNI 239
>gi|254523778|ref|ZP_05135833.1| flagellar biosynthetic protein FliR [Stenotrophomonas sp. SKA14]
gi|219721369|gb|EED39894.1| flagellar biosynthetic protein FliR [Stenotrophomonas sp. SKA14]
Length = 263
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 88/237 (37%), Gaps = 3/237 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R+G+ M +P + +P +VR+ A +I L P L + F
Sbjct: 16 GMIGTVLWTMLRIGAVAMAMPMVGTRAVPARVRVVLAGTLAIALAPLLPPVPEWTGFD-- 73
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G L+R+ G +I+ GL +
Sbjct: 74 AATVLTIARELAIGVAIGFLLRLVFEAGAMAGELIAQGTGLAFAQMSDPLRGGTSGVIGQ 133
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
++ L + + H + +V SY +PIG L + F S L T L L
Sbjct: 134 WFYLLFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTL 193
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + N++ G+L + P + + P + LG L L +
Sbjct: 194 AIPLTVAMLAVNLAFGVLARAAPALNPIQLGLPVSLLLGLFLLALLAGEMGPPVQRL 250
>gi|170019717|ref|YP_001724671.1| flagellar biosynthesis protein FliR [Escherichia coli ATCC 8739]
gi|169754645|gb|ACA77344.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739]
Length = 261
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLVLTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|160880829|ref|YP_001559797.1| flagellar biosynthetic protein FliR [Clostridium phytofermentans
ISDg]
gi|160429495|gb|ABX43058.1| flagellar biosynthetic protein FliR [Clostridium phytofermentans
ISDg]
Length = 255
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 101/244 (41%), Gaps = 2/244 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ P ++ F+I+ R+ + I P S+ +P +V++ ++ +I+L +
Sbjct: 2 VIPVEQLVFFFVILVRISAFIYTGPFFSLKNVPQKVKIGLSLTLAIILNQTIPY--SELV 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
+ ++ +++ E G + G + L G ++ IG ++ + T
Sbjct: 60 YEGVIGFAIVIVGEALAGAIMGFFSNICFQILSLAGQLMDMEIGFSMVNEFDPISNAQVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
+ +L L + + HH + ALV SY IP+G I++ V + F+I
Sbjct: 120 ITANFYHYAVMLFLLITNMHHYIIKALVDSYQVIPVGGAKLNPLIYTVMVQFVVDFFVIA 179
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
R+ P ++ N+ + +L K+ PQ+ ++ I + +G + L +I
Sbjct: 180 FRIILPIFASMLIVNVVLAILAKVAPQMNMFVIGLQLKVLIGFIVLLFMTLMIPSVADFI 239
Query: 243 FLYG 246
F
Sbjct: 240 FTEM 243
>gi|317013592|gb|ADU81028.1| flagellar biosynthesis protein FliR [Helicobacter pylori
Gambia94/24]
Length = 255
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+G+ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|331677832|ref|ZP_08378507.1| flagellar biosynthetic protein FliR [Escherichia coli H591]
gi|331074292|gb|EGI45612.1| flagellar biosynthetic protein FliR [Escherichia coli H591]
Length = 261
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLNLYFWPLLRVLTLISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|292487980|ref|YP_003530857.1| flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430]
gi|292899200|ref|YP_003538569.1| flagellar biosynthetic protein FliR [Erwinia amylovora ATCC 49946]
gi|291199048|emb|CBJ46159.1| flagellar biosynthetic protein FliR [Erwinia amylovora ATCC 49946]
gi|291553404|emb|CBA20449.1| Flagellar biosynthetic protein FliR [Erwinia amylovora CFBP1430]
gi|312172105|emb|CBX80362.1| Flagellar biosynthetic protein FliR [Erwinia amylovora ATCC
BAA-2158]
Length = 261
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ LF + RV + IM P LS I +V++ + + VL+P L T +
Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKSISRKVKIGLGVMITWVLIPSLPPT---NVTLFSV 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G G ++ ++ G VI +GL+ T L L
Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + + +S+ T+PIG E GN F + F+ +RL+
Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVAESFQTLPIGGEPLNGNAFMALTESANLIFLNGMRLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F
Sbjct: 189 PLITLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLFSEIF 248
>gi|256020207|ref|ZP_05434072.1| flagellar biosynthetic protein FliR [Shigella sp. D9]
gi|332281369|ref|ZP_08393782.1| lateral flagellar export/assembly protein [Shigella sp. D9]
gi|332103721|gb|EGJ07067.1| lateral flagellar export/assembly protein [Shigella sp. D9]
Length = 260
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLISLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYVILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|153011500|ref|YP_001372714.1| flagellar biosynthesis protein FliR [Ochrobactrum anthropi ATCC
49188]
gi|151563388|gb|ABS16885.1| flagellar biosynthetic protein FliR [Ochrobactrum anthropi ATCC
49188]
Length = 255
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 76/237 (32%), Positives = 136/237 (57%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PGLS + IP+QVRL A+A S +LP + + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGLSSARIPLQVRLYIALACSFAVLPLVLQRIVTVVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L+ E+F+G V G+L +Y LQF S ++ ++G + + I++S + L
Sbjct: 70 PWTLFRLMASEMFVGAVIGILAHIYFWALQFMASTMAVSVGYSGSPADAITESEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L ++ D H ++F AL+ SY IP+ + F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFITDMHLEIFRALLNSYVAIPVDGQFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YF+S P+++G G L + + ++ F++
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPTIPVYFVSMPFVLGGGLLVVYFILPELLRFFTNE 246
>gi|163850131|ref|YP_001638174.1| flagellar biosynthesis protein FliR [Methylobacterium extorquens
PA1]
gi|218528735|ref|YP_002419551.1| flagellar biosynthesis protein FliR [Methylobacterium
chloromethanicum CM4]
gi|254559276|ref|YP_003066371.1| flagellar biosynthesis protein FliR [Methylobacterium extorquens
DM4]
gi|163661736|gb|ABY29103.1| putative flagellar biosynthetic protein [Methylobacterium
extorquens PA1]
gi|218521038|gb|ACK81623.1| flagellar biosynthesis protein FliR [Methylobacterium
chloromethanicum CM4]
gi|254266554|emb|CAX22318.1| Flagellar biosynthesis protein FliR [Methylobacterium extorquens
DM4]
Length = 256
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFVNRA 67
+ +FLI CR+G C++++PG S +P QVRL A S+ + P L +
Sbjct: 14 FLGVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAGGVSLAVTPLLLPLFQTKLSGQAPT 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E G + GLL R++ L+ + +ST +G + + A + SL
Sbjct: 74 ETLTWIASETVTGLLIGLLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + ++ D H ++F LV SYG IP G+ + + F + LR+++
Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYGRIPPGEGFGTQTALVRIADQIAEAFTLALRIAA 193
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
PF+ + + N++ G +NKL P IP+YF++TP+++ L L + QF +
Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFVATPFVMFGALLLLYTLSSEFMTQFLSGY 249
>gi|46581636|ref|YP_012444.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601205|ref|YP_965605.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris DP4]
gi|46451059|gb|AAS97704.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561434|gb|ABM27178.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris DP4]
gi|311235278|gb|ADP88132.1| flagellar biosynthetic protein FliR [Desulfovibrio vulgaris RCH1]
Length = 263
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 98/237 (41%), Gaps = 1/237 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L RV + LLP +PMQV++ + ++ L P L + +
Sbjct: 12 LGFLLTFMRVSLVMFLLPFFGGDAVPMQVKVALCLVMAMALWPRLSLAGAVM-PSHPFEL 70
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ EL LG V G+ + G+Q G ++ +G + + + + +
Sbjct: 71 VVMLASELVLGLVLGMAVHFLFAGIQTGGQLLGFQMGFTMISIADPLSGAQISITSHFLY 130
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++ LL +D H + A +S+ +P G + + + V + F+I +++++P
Sbjct: 131 MVSLLTFLALDGHLFLLRAFAESFALVPAGGLVANPAVANELVRLAGGMFVIAVKIAAPV 190
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
L + +++ L+ + PQ+ + I P I +G F+ L I+ +
Sbjct: 191 LVTLFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFMGLLFTILAQYIEEFIIGM 247
>gi|157156975|ref|YP_001463252.1| flagellar biosynthesis protein FliR [Escherichia coli E24377A]
gi|218695555|ref|YP_002403222.1| flagellar biosynthesis protein FliR [Escherichia coli 55989]
gi|256022392|ref|ZP_05436257.1| flagellar biosynthesis protein FliR [Escherichia sp. 4_1_40B]
gi|301029407|ref|ZP_07192501.1| flagellar biosynthetic protein FliR [Escherichia coli MS 196-1]
gi|307138617|ref|ZP_07497973.1| flagellar biosynthesis protein FliR [Escherichia coli H736]
gi|309795943|ref|ZP_07690356.1| flagellar biosynthetic protein FliR [Escherichia coli MS 145-7]
gi|331642571|ref|ZP_08343706.1| flagellar biosynthetic protein FliR [Escherichia coli H736]
gi|331668641|ref|ZP_08369489.1| flagellar biosynthetic protein FliR [Escherichia coli TA271]
gi|331683502|ref|ZP_08384103.1| flagellar biosynthetic protein FliR [Escherichia coli H299]
gi|157079005|gb|ABV18713.1| flagellar biosynthetic protein FliR [Escherichia coli E24377A]
gi|218352287|emb|CAU98044.1| flagellar export pore protein [Escherichia coli 55989]
gi|299877711|gb|EFI85922.1| flagellar biosynthetic protein FliR [Escherichia coli MS 196-1]
gi|308120393|gb|EFO57655.1| flagellar biosynthetic protein FliR [Escherichia coli MS 145-7]
gi|324018859|gb|EGB88078.1| flagellar biosynthetic protein FliR [Escherichia coli MS 117-3]
gi|331039369|gb|EGI11589.1| flagellar biosynthetic protein FliR [Escherichia coli H736]
gi|331063835|gb|EGI35746.1| flagellar biosynthetic protein FliR [Escherichia coli TA271]
gi|331079717|gb|EGI50914.1| flagellar biosynthetic protein FliR [Escherichia coli H299]
Length = 261
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
>gi|188534132|ref|YP_001907929.1| flagellar biosynthesis protein FliR [Erwinia tasmaniensis Et1/99]
gi|188029174|emb|CAO97046.1| Flagellar biosynthesis protein [Erwinia tasmaniensis Et1/99]
Length = 263
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ LF + RV + IM P LS I +V++ + + VL+P L T +
Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKAISRKVKIGLGVMITWVLVPSLPPT---HVTLFSV 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G G ++ ++ G VI +GL+ T L L
Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + + S+ T+PIG E GN F + F+ +RL+
Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVADSFHTLPIGAEPLNGNAFMALTKAANLIFLNGMRLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F
Sbjct: 189 PLITLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSIGMIFIILMMPLLAPFCEHLFSEIF 248
>gi|149908780|ref|ZP_01897440.1| putative flagellar biosynthetic protein FliR [Moritella sp. PE36]
gi|149808054|gb|EDM67995.1| putative flagellar biosynthetic protein FliR [Moritella sp. PE36]
Length = 260
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 3/231 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
++ R+ S + LLP + I VR+ FA+ +I++ P + ++ F +
Sbjct: 16 IWWPFFRIISALWLLPIFGDTRITPSVRILFALTLAILISPVVPVVDNINPFSLGS--II 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L + ++ G GL + + ++ G ++S +GL++ S + + L+ I
Sbjct: 74 LALEQILFGLFFGLSLTMLFTMMKLIGEILSMQMGLSMAVMNDPSSGGSSHVNSHLLTIF 133
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L + H V LV+S+ T PIG + NI + ++ FM L L+ P +
Sbjct: 134 ATLLFLSFNGHLIVLDILVESFVTWPIGSSIYLLNI-DIILKLVSWMFMAALMLAMPAIV 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++ NI+ G++N+ P + +Y + P + LG + L L +I +F
Sbjct: 193 AMLLVNITFGVMNRSAPSLNVYSLGFPMGMLLGIICLGLVFRVIPNRFFDF 243
>gi|197334958|ref|YP_002156666.1| flagellar biosynthetic protein FliR [Vibrio fischeri MJ11]
gi|197316448|gb|ACH65895.1| flagellar biosynthetic protein FliR [Vibrio fischeri MJ11]
Length = 260
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 92/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ ++RL ++ + ++P + V+
Sbjct: 11 FIATYFWPYTRISAMLMVMSVFGARFVSPRIRLYLGLSITFAVMPAIPAMPPEIQLVSFQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G G++ T G ++ L + + ++ L L
Sbjct: 71 GFMTTA-EQIIIGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +L D H ++ +V S+ T+P+G + S + L L +S
Sbjct: 130 FMFLSILFFLGTDGHLKMINFVVMSFTTLPVGVGKLTSVDYQSMASWLGIMMKAGLSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L I + + +L
Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIILGLFNHYDLHWLRA 248
>gi|262273549|ref|ZP_06051363.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886]
gi|262222527|gb|EEY73838.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886]
Length = 256
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ R+G+ + ++P IP+QVR+ + + P + +++ +
Sbjct: 11 AWFGQIWWPFLRIGAFLTMMPIFGGMNIPVQVRIGLTWLIAAIAAPLMPPMPEVEPLSLQ 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + L E+ +G + ++ + G ++ST +GL + + ++ +
Sbjct: 71 A--ALLSAKEILIGGIMAFVLELLFSVFMTLGQILSTQMGLGMAMMNDPVNGVSIASIGK 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ +L +D H +V S+ +G+ + L LS
Sbjct: 129 FYQLFAILLFLALDGHLIALEVIVTSFDIWQVGET-MSQMALKTVFMQFSWMIGAALLLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ NI+ G++N+ PQ+ ++ + P + LG L L++ I + F++
Sbjct: 188 LPAMIAMLLVNIAFGVMNRAAPQLNVFALGFPMTLLLGLACLFLTMSGIPHNFANF 243
>gi|256059812|ref|ZP_05450007.1| flagellar biosynthesis protein FliR [Brucella neotomae 5K33]
gi|261323792|ref|ZP_05962989.1| flagellar biosynthetic protein FliR [Brucella neotomae 5K33]
gi|261299772|gb|EEY03269.1| flagellar biosynthetic protein FliR [Brucella neotomae 5K33]
Length = 255
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 77/237 (32%), Positives = 137/237 (57%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY TIP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVTIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246
>gi|308182347|ref|YP_003926474.1| flagellar biosynthesis protein FliR [Helicobacter pylori PeCan4]
gi|308064532|gb|ADO06424.1| flagellar biosynthesis protein FliR [Helicobacter pylori PeCan4]
Length = 255
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPKLAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|188494213|ref|ZP_03001483.1| flagellar biosynthetic protein FliR [Escherichia coli 53638]
gi|188489412|gb|EDU64515.1| flagellar biosynthetic protein FliR [Escherichia coli 53638]
Length = 260
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLVLQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|320668513|gb|EFX35340.1| flagellar biosynthesis protein FliR [Escherichia coli O157:H7 str.
LSU-61]
Length = 261
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTFGISLMATLMPLIAPFCEHLFSEIF 248
>gi|300920169|ref|ZP_07136619.1| flagellar biosynthetic protein FliR [Escherichia coli MS 115-1]
gi|300412826|gb|EFJ96136.1| flagellar biosynthetic protein FliR [Escherichia coli MS 115-1]
Length = 261
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + +V ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLMVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|27381961|ref|NP_773490.1| flagellar biosynthesis protein FliR [Bradyrhizobium japonicum USDA
110]
gi|27355131|dbj|BAC52115.1| fliR [Bradyrhizobium japonicum USDA 110]
Length = 250
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 1/240 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59
M S ++ F++ CR+G+C+M +PG S +P QVRL A+ + L P L +
Sbjct: 1 MISSLADSVLVTFIVFCRIGACLMFVPGYSSVNVPAQVRLFIALVTTFALTPILIAVLKP 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
L + + L+ E+ +G V GL RV+ L LQ +V+++AIGL+ I D+
Sbjct: 61 LTDQAAPLTLALLIGSEVLVGSVIGLGGRVFFLALQTMATVMASAIGLSNIPGTPIGDTD 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
L LI ++ D H QV L+ SY G L V+ L F
Sbjct: 121 PAPALVPLIMASVTTLFFMTDQHWQVLRGLMNSYDVWHPGARLGGSMALDQLVSRLSEAF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++ LR++SPF+ + ++ N+++GL+NKL P IP+YFIS P+++ G L L L+ + ++ QF
Sbjct: 181 VLTLRIASPFIVYSVIVNLAVGLINKLTPAIPVYFISVPFVLFGGFLLLYLTSDELLTQF 240
>gi|308187302|ref|YP_003931433.1| Flagellar biosynthetic protein fliR [Pantoea vagans C9-1]
gi|308057812|gb|ADO09984.1| Flagellar biosynthetic protein fliR [Pantoea vagans C9-1]
Length = 261
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 103/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + P L+ + +V++ A+ + +L+P L + +
Sbjct: 11 QWVSQFFWPLVRIMALFATAPILNERSVSKRVKIGLAVMITWLLMPLLPA---VNVTLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ ++ +G G ++ ++ G VI +G++ T L L
Sbjct: 68 PAGFWLLIQQMLIGIALGFTMQFAFAAVRLAGEVIGLQMGISFATFFDPGSRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L + H + L S+ T+PIG N F + V F+ + L+
Sbjct: 128 FLDMLAMLLFLTFNGHLWLISLLADSFHTLPIGGHPLNANAFMALVKSGGLIFLNGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+ +GLLN++ PQ+ I+ I P + +G L + L + ++ H F
Sbjct: 188 LPLIVLLLMVNLVLGLLNRVSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFSEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|224417781|ref|ZP_03655787.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT
98-5491]
gi|253827123|ref|ZP_04870008.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313141324|ref|ZP_07803517.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT
98-5491]
gi|253510529|gb|EES89188.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313130355|gb|EFR47972.1| flagellar biosynthesis protein FliR [Helicobacter canadensis MIT
98-5491]
Length = 256
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/246 (21%), Positives = 101/246 (41%), Gaps = 2/246 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ E + + L++ R I P I Q++ F +I+ LP +
Sbjct: 4 LAYLTEGNVTNFLLLLLRFAGIIAFFPFFENQLINTQIKGIFIFWLTILFLPLVTTMPP- 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + + E+ LG + +++ + F G VIS A+GL + +
Sbjct: 63 -SNLTILEFIIAGITEIMLGFLASFALQIVFGMISFGGEVISFAMGLTIANAYDPVTGAQ 121
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + L+ ++ L+ + +D+HH Y + +S IP+G L N + F+
Sbjct: 122 KPIVGQLLTLLALMIVLALDYHHLFLYFVGESIKEIPLGGFLYSHNYIIYTIKAFSNLFL 181
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I L +S P + ++ +I G++ K PQ + I P I + L + I I+ F
Sbjct: 182 IGLTMSFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAVAFAVLIVIIPAIMIHFK 241
Query: 241 HSFLYG 246
FL
Sbjct: 242 REFLSA 247
>gi|222824090|ref|YP_002575664.1| flagellar biosynthesis protein FliR [Campylobacter lari RM2100]
gi|222539312|gb|ACM64413.1| flagellar biosynthesis protein FliR [Campylobacter lari RM2100]
Length = 256
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ L+ R+ I+ P S + IP+ V+ A+ ++ L P L+N ++
Sbjct: 12 VVIFMLLFARMSGLIVFFPFFSHNSIPLVVKTTLALFLTMFLYPLA----KLENNTPDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G V GL++++ LQ G IS +G ++ + + + ++ ++
Sbjct: 68 FILYLLSEVLFGMVAGLILQMIFAILQMAGEQISFTMGFSMASILDPATGANTPVISQVL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ LL D HH + + S I +G N+ + F++ ++ P
Sbjct: 128 NLLALLVFLAFDGHHLILLFISNSLEYISLGGFYPHENLMLYLNKAMVNIFVLGFSMAFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ G+L K +PQ + + P I L L + I++ F + L F
Sbjct: 188 ILAISLLSDVIFGMLMKTMPQFNLLVVGYPIKIFLSFAVLIAILLIMMQYFKNLMLKSF 246
>gi|157161421|ref|YP_001458739.1| flagellar biosynthesis protein FliR [Escherichia coli HS]
gi|157067101|gb|ABV06356.1| flagellar biosynthetic protein FliR [Escherichia coli HS]
Length = 261
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIASFCEHLFSEIF 248
>gi|15611229|ref|NP_222880.1| flagellar biosynthesis protein FliR [Helicobacter pylori J99]
gi|4154675|gb|AAD05742.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 255
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAIYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+G+ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|291278827|ref|YP_003495662.1| flagellar biosynthetic protein FliR [Deferribacter desulfuricans
SSM1]
gi|290753529|dbj|BAI79906.1| flagellar biosynthetic protein FliR [Deferribacter desulfuricans
SSM1]
Length = 261
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/245 (21%), Positives = 106/245 (43%), Gaps = 2/245 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ +++ FLIV RV + P + +++RL F++ SI+++ + +I
Sbjct: 7 LLNTDYLLTFFLIVIRVSGILFTAPVFGSGVVDVRLRLFFSIIVSILIINNV--SIISFQ 64
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
V+ LV+ EL +G G+L R G+QF G +I +G + + + +
Sbjct: 65 NVSTLLLILLVIKELLIGIATGVLARFIFAGVQFGGQLIGFQMGFGVVNILDPQTNTQVS 124
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
+ I+ +L I H V A+ S+ +P+ + + V + F+
Sbjct: 125 IIAQFQNILMILIFLAIGGHLFVIKAISYSFTNVPLAKFTFSSEGYIFLVEKFGSIFLTA 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+++ +P ++ ++ +G++ +LVPQ+ + + P I G L L LS+ F
Sbjct: 185 IKIIAPVFVTLLLLHVVMGIMARLVPQMNVLIVGFPVQIAFGLLVLLLSLSYFYKIFEKI 244
Query: 243 FLYGF 247
Sbjct: 245 LYQYL 249
>gi|330447935|ref|ZP_08311583.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492126|dbj|GAA06080.1| flagellar biosynthetic protein FliR [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 258
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 100/236 (42%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + R+G+ ++ +P + IP+ VR A+A S + P +
Sbjct: 10 ALLAQFWWPFFRIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTDLLSLN 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L + G + GL++ + G +IS +GL + + ++ L
Sbjct: 70 A--LTLAFEQAIWGILFGLILHFLFSIMTLLGQIISLQMGLGMAMMNDPVNGVSIAILGR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + L +D H V LV+S+ + P+G L ++ + + F L ++
Sbjct: 128 MFLLFSTLLFLALDGHLLVIDILVQSFTSWPVGSGLALSSV-KQILTLFGWMFSSALAIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPTRYAEL 242
>gi|109899340|ref|YP_662595.1| flagellar biosynthesis protein FliR [Pseudoalteromonas atlantica
T6c]
gi|109701621|gb|ABG41541.1| flagellar biosynthetic protein FliR [Pseudoalteromonas atlantica
T6c]
Length = 259
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 94/240 (39%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M + L R+ + + GLS +P VR + + ++LP + ++
Sbjct: 10 QFMGDMLLPFMRISGMLATMVGLSAKTVPTTVRALLTLFITFIILPVIPPVPVVEILSVS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ +L +G G + + G V++ GL + + + + +
Sbjct: 70 T--FVLVIQQLIIGISLGFISTMVLNTFVLAGQVVAMQTGLGFASIVDPVNGINVPAVGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
I+ L W +D H + +V S+ P+G+ F + F+ + LS
Sbjct: 128 FYLILATLLFWALDGHLAMIRMVVMSFTAFPVGEAWLQPEQFREIAHWAGWMFISAVTLS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ N++ G++ K PQ+ I+ + +G + + ++++ Y F +
Sbjct: 188 LAPIVSLLIVNLAFGVMTKAAPQLNIFSLGFSIAQIMGLVIIWITMDNFTYHFEVQWDRA 247
>gi|317008844|gb|ADU79424.1| flagellar biosynthesis protein FliR [Helicobacter pylori India7]
Length = 255
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSTIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCTSVFLQIVFASLVFATDSISFSMGLTMASTYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|290475716|ref|YP_003468605.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus
bovienii SS-2004]
gi|289175038|emb|CBJ81841.1| putative flagellar biosynthetic protein, regulator [Xenorhabdus
bovienii SS-2004]
Length = 260
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ F + R+ + P S P++VR+ A+A + +L+P + Q V
Sbjct: 12 LVSDFFWPLVRLLALFSTAPIFSEKQTPIKVRMSLALAITFLLVPNIP---SPQIPVFSV 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+++ ++ +G GL +++ ++ G ++ +GL+ T + L +
Sbjct: 69 AGVWVMIQQVLIGVALGLTMQIAFAAIRHAGEILGLQMGLSFATFFDPTGGPNMPILARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L +D H + L ++ +IPI F F+ + L+
Sbjct: 129 LNLLMMLMFLALDGHLWLLSILAGTFDSIPIQPMQLNPKGFLLLAQSAHLIFINGMMLAM 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + +V N ++G+LN++ PQ+ ++ I P + +G L L ++ F
Sbjct: 189 PLITLLLVLNFALGMLNRMTPQLSVFVIGFPLTLTVGIFTLSLLFPMLAPFTERLMAEIF 248
>gi|317012018|gb|ADU82626.1| flagellar biosynthesis protein FliR [Helicobacter pylori
Lithuania75]
Length = 255
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILITSAIMGRFKEEISLAF 248
>gi|208434126|ref|YP_002265792.1| flagellar biosynthetic protein [Helicobacter pylori G27]
gi|208432055|gb|ACI26926.1| flagellar biosynthetic protein [Helicobacter pylori G27]
Length = 255
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSSAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPKLAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|317492420|ref|ZP_07950849.1| flagellar biosynthetic protein FliR [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919759|gb|EFV41089.1| flagellar biosynthetic protein FliR [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 261
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + I P LS I + ++ AMA + +L+P L ++
Sbjct: 12 WLGQYFWPFVRMLALISTAPLLSEKAISKKTKVGLAMAITFLLVPNLGSNPTPVVSISG- 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
LV ++ +G GL ++ ++ G VI +GL+ T S L L
Sbjct: 71 --LWLVTQQILIGAALGLTMQFAFAAVRLAGEVIGLQMGLSFATFFDPSGGPNMPILARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + L +S+ T+PI ++ GN F F+ L L+
Sbjct: 129 LNLLTMLLFLSFNGHLWMISLLAESFQTLPISEQPLNGNGFLMLAQAGSLIFVNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N ++GLLN++ PQ+ I+ + P + +G L L + ++V H F F
Sbjct: 189 PLITLLLALNTALGLLNRMTPQLSIFVVGFPLTLTIGMFSLSLMMPMLVPFSEHLFSEVF 248
>gi|23500846|ref|NP_700286.1| flagellar biosynthesis protein FliR [Brucella suis 1330]
gi|161621174|ref|YP_001595060.1| flagellar biosynthesis protein FliR [Brucella canis ATCC 23365]
gi|254699255|ref|ZP_05161083.1| flagellar biosynthesis protein FliR [Brucella suis bv. 5 str. 513]
gi|254702375|ref|ZP_05164203.1| flagellar biosynthesis protein FliR [Brucella suis bv. 3 str. 686]
gi|254711811|ref|ZP_05173622.1| flagellar biosynthesis protein FliR [Brucella ceti M644/93/1]
gi|254714879|ref|ZP_05176690.1| flagellar biosynthesis protein FliR [Brucella ceti M13/05/1]
gi|256015890|ref|YP_003105899.1| flagellar biosynthesis protein FliR [Brucella microti CCM 4915]
gi|260568722|ref|ZP_05839191.1| flagellar biosynthesis protein FliR [Brucella suis bv. 4 str. 40]
gi|261216568|ref|ZP_05930849.1| flagellar biosynthetic protein FliR [Brucella ceti M13/05/1]
gi|261319439|ref|ZP_05958636.1| flagellar biosynthetic protein FliR [Brucella ceti M644/93/1]
gi|261749694|ref|ZP_05993403.1| flagellar biosynthetic protein FliR [Brucella suis bv. 5 str. 513]
gi|261752938|ref|ZP_05996647.1| flagellar biosynthetic protein FliR [Brucella suis bv. 3 str. 686]
gi|23464510|gb|AAN34291.1| flagellar biosynthesis protein FliR, putative [Brucella suis 1330]
gi|161337985|gb|ABX64289.1| flagellar biosynthetic protein FliR [Brucella canis ATCC 23365]
gi|255998550|gb|ACU50237.1| flagellar biosynthesis protein FliR [Brucella microti CCM 4915]
gi|260155387|gb|EEW90468.1| flagellar biosynthesis protein FliR [Brucella suis bv. 4 str. 40]
gi|260921657|gb|EEX88225.1| flagellar biosynthetic protein FliR [Brucella ceti M13/05/1]
gi|261292129|gb|EEX95625.1| flagellar biosynthetic protein FliR [Brucella ceti M644/93/1]
gi|261739447|gb|EEY27373.1| flagellar biosynthetic protein FliR [Brucella suis bv. 5 str. 513]
gi|261742691|gb|EEY30617.1| flagellar biosynthetic protein FliR [Brucella suis bv. 3 str. 686]
Length = 255
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 76/237 (32%), Positives = 136/237 (57%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246
>gi|218778858|ref|YP_002430176.1| flagellar biosynthetic protein FliR [Desulfatibacillum alkenivorans
AK-01]
gi|218760242|gb|ACL02708.1| Flagellar biosynthetic protein FliR [Desulfatibacillum alkenivorans
AK-01]
Length = 260
Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 102/237 (43%), Gaps = 1/237 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
M LI+ RV + + P + IP+ V+ ++ ++ L P +
Sbjct: 11 MAVFALILIRVSVILFMFPVFGSNLIPLPVKAGLSLLLTLYLTPIVQVNPQ-SFPDTVLE 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+++ E +G L++ + +Q G ++ +G + + L++
Sbjct: 70 GGVMILCEAVMGLTLSLIVSFFFAAVQVGGQLVGYQMGFAIANVFDPVSGGQMSILSNFA 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L+ V++ HH A+ S+ +P+G +I S + + F + L+++ P
Sbjct: 130 FWVTLVLFIVLNGHHIFIRAVAHSFEIVPVGHLYAGRSIMPSMIKLSTDMFTLSLQIAGP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ ++ N + G++ K+VPQI I ++ P +G+G F +S+++I+
Sbjct: 190 AIVALLLVNAAFGIVAKVVPQINILIVAFPINVGMGLFFFGVSLQLILASMKAHLDE 246
>gi|306845411|ref|ZP_07477985.1| flagellar biosynthetic protein FliR [Brucella sp. BO1]
gi|306274154|gb|EFM55970.1| flagellar biosynthetic protein FliR [Brucella sp. BO1]
Length = 255
Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 76/237 (32%), Positives = 135/237 (56%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L+ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMAGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246
>gi|149908445|ref|ZP_01897108.1| flagellar biosynthesis protein [Moritella sp. PE36]
gi|149808608|gb|EDM68543.1| flagellar biosynthesis protein [Moritella sp. PE36]
Length = 261
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 91/240 (37%), Gaps = 2/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M S R+ +M++ P +RL + A ++++ P L ++ F
Sbjct: 10 TFMASYIWPFARLSGMVMVMIVSGAKTTPTIIRLFYCFALTVMVAPVLPPMPNVDLFSLS 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ ++ + +G G + + G +I+ L + + +
Sbjct: 70 SFMI--ILQQSLIGIAIGFVTVMLIQTFVLAGQIIAMQTSLGFASMADPASGQMSPVIGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++G L ++ H + +VKS+ T+P+ + + F L +S
Sbjct: 128 IYILLGTLVYLSVNGHLFMIETVVKSFETLPVSASGLVAIQYYEIAGWMSVMFAAALSMS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ +V N S G++ K PQ+ ++ + + G + LS++ V+ F +
Sbjct: 188 LSAVVAMLVINFSFGVMTKAAPQLNVFSLGFAVGMVAGLFIIYLSLKSFVFHFDAQWQRA 247
>gi|256833223|ref|YP_003161950.1| flagellar biosynthetic protein FliR [Jonesia denitrificans DSM
20603]
gi|256686754|gb|ACV09647.1| flagellar biosynthetic protein FliR [Jonesia denitrificans DSM
20603]
Length = 253
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 97/240 (40%), Gaps = 3/240 (1%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ L+ R + ++ P S P V++ A+ ++ + P + + QN
Sbjct: 4 TLSAATIETVMLVSVRFIAFFVIAPPFSARSFPATVKMMLALGMALAVAPTITPAVPAQN 63
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
F Y + +++ +G G ++ + ++ G +I G + + +
Sbjct: 64 F---GTYMLALGLQVVIGASLGFIVYLVFAAVESAGGMIDMTGGFAMAQGFDPLNQVNGA 120
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
+ L + L L+ + HH + ++S+ P+ +N + S L F+
Sbjct: 121 QMYRLFQMTALALLFASNGHHLIVGGFIRSFEFAPLAGGINMDRMGQSVATGLTDLFLAA 180
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P + ++ ++ +GLL+++ P + ++ +S P I L + +
Sbjct: 181 IQIAGPLIVVLVLADVGMGLLSRVAPALNVFVLSFPLKIFLTITLVSVVYLTFPRIIEAL 240
>gi|188579933|ref|YP_001923378.1| flagellar biosynthesis protein FliR [Methylobacterium populi BJ001]
gi|179343431|gb|ACB78843.1| putative flagellar biosynthetic protein [Methylobacterium populi
BJ001]
Length = 256
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV-NRA 67
+S+FLI CR+G C++++PG S +P QVRL A S+ + P L +
Sbjct: 14 FLSVFLIFCRIGGCLLIVPGFSSPRVPAQVRLLIAAGVSLAVTPLLLPLFQGRLPGQAPT 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E G + G L R++ L+ + +ST +G + + A + SL
Sbjct: 74 ETLVWIASESITGLLIGFLGRIFVFVLETVMNAVSTMVGFGSMPGTPVEGTDAIPAVESL 133
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + ++ D H ++F LV SY IP G+ + + F + LR+++
Sbjct: 134 IVFTAVALMFAADLHWELFRGLVDSYARIPPGEGFGTQTALVRIADQIGEAFTLALRIAA 193
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
PF+ + + N++ G +NKL P IP+YFI+TP+++ + L + QF +
Sbjct: 194 PFIIYAVAVNLAAGFVNKLTPTIPVYFIATPFVMFGALILLYTLSSEFMTQFLSGY 249
>gi|315126007|ref|YP_004068010.1| flagellar biosynthetic protein FliR [Pseudoalteromonas sp. SM9913]
gi|315014521|gb|ADT67859.1| putative flagellar biosynthetic protein FliR [Pseudoalteromonas sp.
SM9913]
Length = 259
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 101/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
M +L+ R + + +P + + R+ +M + ++ P L + F A
Sbjct: 15 WMGTLWWPFVRFSALLWSMPVFDNPAVTPRSRILVSMMLAFLVAPQLPLAPAIDLFSLDA 74
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L ++ G + GL +R+ + G ++S +GL++ M L L
Sbjct: 75 --AILTFEQIIFGVMMGLSLRILFEVMAMIGLILSMQMGLSMALVMDPGSGNQVALLGQL 132
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ L + +D H +V+S+ + PIG+ + +I S + + F L LS
Sbjct: 133 FWIMCALLFFAVDGHLITLQVMVESFHSFPIGRSIYEFDI-QSIIMLFAWMFSSALLLSL 191
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ N++ G+ ++ P + I+ + P + +G + +++E FS
Sbjct: 192 PGIVAMLLVNLTFGVASRAAPSLNIFVLGFPMSLLMGFFCVFMTLEYTGSAFSRL 246
>gi|270262393|ref|ZP_06190664.1| flagellar biosynthetic protein FliR [Serratia odorifera 4Rx13]
gi|270043077|gb|EFA16170.1| flagellar biosynthetic protein FliR [Serratia odorifera 4Rx13]
Length = 260
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + F + R+ + I P S I +V++ I++ P L + +
Sbjct: 11 VWLSHYFWPLLRILALISTAPVFSEKQIGKKVKIGLGGLIVILIAPGLPTS---AVPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L ++ +G GL ++ ++ G VI +GL+ T S L
Sbjct: 68 AAGLWLAAQQILIGVALGLTMQFAFAAIRLAGEVIGMQMGLSFATFFDPSGGPNTPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ ++ +L D H + L S+ T+PI GN F + + F+ + L+
Sbjct: 128 LLNLLAMLLFLSFDGHLWLISLLADSFHTLPIQPAPLNGNGFLALTQVGSLIFINGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+++GLLN++ PQ+ ++ I P + +G + + + + ++ H F
Sbjct: 188 LPLICLLLTLNMALGLLNRMTPQLSVFVIGFPVTMTIGIMTIGMMMPMLAPFCEHLFGEF 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|269796380|ref|YP_003315835.1| flagellar biosynthetic protein FliR [Sanguibacter keddieii DSM
10542]
gi|269098565|gb|ACZ23001.1| flagellar biosynthetic protein FliR [Sanguibacter keddieii DSM
10542]
Length = 252
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/234 (18%), Positives = 99/234 (42%), Gaps = 4/234 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ SL L+ R+ + +++ P S IP V++ A ++ + P + + + +
Sbjct: 10 LESLMLVGVRMVAFLVVAPPFSHRGIPATVKVMLATGLALAVSPRVENLVP----DSTGE 65
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y L++ E +G G L+ V +Q G++I G +L + L
Sbjct: 66 YVVLLVGEAIIGAGLGFLVAVVFSAVQSAGALIDLMGGFSLAQGFDPMTQVNGAQFARLY 125
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ ++ L+ + + V LV+++ +P+G L+ + + + L F+ L+++ P
Sbjct: 126 QLTAVVILFASNGYQMVIGGLVRTFDALPLGSTLDLARLGEALTSSLTGMFLATLQIAGP 185
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + ++ +GLL ++ P + + + P I L L+ +
Sbjct: 186 LVVVLFLADVGLGLLTRVAPALNAFALGFPLKILLTLSLASLTYLAMPRIIESL 239
>gi|257866392|ref|ZP_05646045.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus
EC30]
gi|257873092|ref|ZP_05652745.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus
EC10]
gi|257800350|gb|EEV29378.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus
EC30]
gi|257807256|gb|EEV36078.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus
EC10]
Length = 249
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 105/231 (45%), Gaps = 4/231 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + LI CR+ + ++L P S P ++ MA +++ LP +L F+
Sbjct: 4 IQATVLIFCRILAFVVLCPIFSQKNFPSLAKIVIGMALTVLCLPTTPAIPELSLFM---- 59
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ V+ E+ G G L ++ G++ G +I +G ++ + + +A +
Sbjct: 60 LTVFVIKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTY 119
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + + +D HH++ AL+ S+ +P+G + G V + ++ + L++P
Sbjct: 120 YWLTIAVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAP 179
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ ++ ++ +G++++ +PQI I +S + + L + ++
Sbjct: 180 MIIALLLVDLVLGVISRSIPQINILMMSLSMKTAISFVVFLLLLPNVLSYL 230
>gi|167645348|ref|YP_001683011.1| flagellar biosynthesis protein FliR [Caulobacter sp. K31]
gi|167347778|gb|ABZ70513.1| flagellar biosynthetic protein FliR [Caulobacter sp. K31]
Length = 251
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/234 (25%), Positives = 127/234 (54%), Gaps = 1/234 (0%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
L+ R+G+ +ML+PG+ + +P ++RL FA+ +I+L P + +I + + V
Sbjct: 15 LVFARIGAMVMLMPGVGEAVVPPRIRLSFAVLMAILLAPLVSSSITT-VPSSVGAVAGAV 73
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ E+ +G + G++++++ L G +IS L+ + + + + T + + + ++GL
Sbjct: 74 IHEVLIGLMIGMVLKLFVSSLTTAGEIISIQTTLSFAQTANPAGAPSSTAVATFLSMLGL 133
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
+ + V D HH A+VKSY P + + + + V + +F + ++L++P L F
Sbjct: 134 VLIMVTDLHHLFIGAMVKSYDIFPFSRAIPVNDAATLAVRTVADSFKLGVQLAAPVLVFS 193
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
IVFN++ GL+ +++P I+F+++P + LG L LS+ I ++ +
Sbjct: 194 IVFNLATGLVGRVMPSFQIFFVTSPLSVILGLSLLGLSLGGIAMVWTDRYRDLL 247
>gi|326791524|ref|YP_004309345.1| flagellar biosynthetic protein FliR [Clostridium lentocellum DSM
5427]
gi|326542288|gb|ADZ84147.1| flagellar biosynthetic protein FliR [Clostridium lentocellum DSM
5427]
Length = 261
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 100/227 (44%), Gaps = 1/227 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L +I CR+ + ++ LP + S IP + +I + + D + Y+
Sbjct: 14 LLIIFCRIIAAVLFLPIIEESRIPKLATSGLCLCLAITVF-MVTDLGQIYYEPTLISYTI 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ E +G + G ++++Y QF GS+ ST GL + ++ + L +
Sbjct: 73 LLLKETLVGLIIGFVLKIYFQIYQFIGSLWSTQGGLGMSMALDPVGGVQTPVLGRFYNLC 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+ +H L+ ++ IPI + + ++ + ++ + +I L+ P L
Sbjct: 133 LCAIFVLSGGYHWFIKTLIDTFTLIPINKGVFGTHLVTGIIDTVGNYLLISFELAMPVLG 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
I+ + +G+L + VPQ+ ++ I P + + L +++ ++
Sbjct: 193 LLILIDFGLGILARTVPQMNMFVIGIPLKVIVLFALLIVTVGLVPRF 239
>gi|260855925|ref|YP_003229816.1| flagellar export pore protein FliR [Escherichia coli O26:H11 str.
11368]
gi|257754574|dbj|BAI26076.1| flagellar export pore protein FliR [Escherichia coli O26:H11 str.
11368]
gi|323152719|gb|EFZ38991.1| flagellar biosynthetic protein FliR [Escherichia coli EPECa14]
Length = 261
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + L ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLADTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P ++ +G + + +I H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLILTVGISLMAALMPLIAPFCEHLFSEMF 248
>gi|237751819|ref|ZP_04582299.1| flagellar biosynthetic protein FliR [Helicobacter bilis ATCC 43879]
gi|229373185|gb|EEO23576.1| flagellar biosynthetic protein FliR [Helicobacter bilis ATCC 43879]
Length = 258
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 103/238 (43%), Gaps = 3/238 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+M+ +++ R G + P +P+ VR A ++V +P + I +
Sbjct: 13 VMAFLMLLLRFGGILAFFPFFDNQILPVSVRAALAFVLAVVFMPMVTHIISYPSLTA--- 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + E+ LG GL++++ + F G + S ++GL + ++ + ++ ++
Sbjct: 70 FMIGGLFEILLGFTCGLVLQIIFSSIVFAGDLASFSMGLTMASAYDPMSGTTKPIVSQVV 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +L +FH+ + + ++ P+G + NI + F +I ++ P
Sbjct: 130 VFLSILMALHFNFHYLLLDIIARTLNDTPLGGFMLSDNIVAYFTKSFANMILIGFSMAFP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ ++ +I G++ K PQ + I P IG+ + L + + I+ F + G
Sbjct: 190 IIAVLLLTDIIFGMIMKTHPQFNLLVIGFPVKIGVALVILAIIVPSIMQHFRYDLSEG 247
>gi|225628421|ref|ZP_03786455.1| flagellar biosynthetic protein FliR [Brucella ceti str. Cudo]
gi|254711211|ref|ZP_05173022.1| flagellar biosynthesis protein FliR [Brucella pinnipedialis B2/94]
gi|256030160|ref|ZP_05443774.1| flagellar biosynthesis protein FliR [Brucella pinnipedialis
M292/94/1]
gi|256158339|ref|ZP_05456243.1| flagellar biosynthesis protein FliR [Brucella ceti M490/95/1]
gi|256252727|ref|ZP_05458263.1| flagellar biosynthesis protein FliR [Brucella ceti B1/94]
gi|260166788|ref|ZP_05753599.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99]
gi|261219805|ref|ZP_05934086.1| flagellar biosynthetic protein FliR [Brucella ceti B1/94]
gi|261318802|ref|ZP_05957999.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis B2/94]
gi|261756165|ref|ZP_05999874.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99]
gi|265987191|ref|ZP_06099748.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis
M292/94/1]
gi|265996854|ref|ZP_06109411.1| flagellar biosynthetic protein FliR [Brucella ceti M490/95/1]
gi|225616267|gb|EEH13315.1| flagellar biosynthetic protein FliR [Brucella ceti str. Cudo]
gi|260918389|gb|EEX85042.1| flagellar biosynthetic protein FliR [Brucella ceti B1/94]
gi|261298025|gb|EEY01522.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis B2/94]
gi|261736149|gb|EEY24145.1| flagellar biosynthesis protein FliR [Brucella sp. F5/99]
gi|262551151|gb|EEZ07312.1| flagellar biosynthetic protein FliR [Brucella ceti M490/95/1]
gi|264659388|gb|EEZ29649.1| flagellar biosynthetic protein FliR [Brucella pinnipedialis
M292/94/1]
Length = 255
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 76/237 (32%), Positives = 136/237 (57%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246
>gi|32266203|ref|NP_860235.1| flagellar biosynthesis protein FliR [Helicobacter hepaticus ATCC
51449]
gi|32262253|gb|AAP77301.1| flagellar biosynthetic protein FliR [Helicobacter hepaticus ATCC
51449]
Length = 258
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 3/240 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L++ R G P I + +R S+ P T+ V
Sbjct: 13 VAVFLLLIARFGGVFAFFPFFDNQLISIHIRAAMVFFMSVAFFPLATYTLPDMTMVE--- 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + E+ LG + + +++ L F G +IS +G + ++ + + LI
Sbjct: 70 FLIAALFEIMLGFIASVCLQIVFAMLSFGGEIISFTMGFTMASAYDPVSGTQKPIIAQLI 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
IIGLL +DFHH +F + S P+G + + FV F + ++ P
Sbjct: 130 AIIGLLVALSLDFHHTIFLIISHSIEATPLGGFVFEPKSAAYFVKAFSNIFAVGFSMAFP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248
L ++ +I G++ K PQ + I P I + + L L+I I+Y F + FF
Sbjct: 190 ILAIILLSDIIFGMIMKTHPQFNLLVIGFPVKIAIAFVVLVLTISTIMYTFKNELKNAFF 249
>gi|310767332|gb|ADP12282.1| flagellar biosynthesis protein FliR [Erwinia sp. Ejp617]
Length = 261
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 108/240 (45%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ LF + RV + IM P LS + +V++ + + VL+P L T +
Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKSVSRKVKIGLGVMITWVLIPSLPPT---NVTLFSV 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G G ++ ++ G VI +GL+ T L L
Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + + S+ T+PIG E GN F + F+ +RL+
Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVADSFQTLPIGGEPLNGNAFMALTKAANIIFLNGMRLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F
Sbjct: 189 PLITLLLTLNLALGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLFSEIF 248
>gi|261341517|ref|ZP_05969375.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC
35316]
gi|288316315|gb|EFC55253.1| flagellar biosynthetic protein FliR [Enterobacter cancerogenus ATCC
35316]
Length = 257
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 100/234 (42%), Gaps = 2/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++L R+ + + P L +++ A+A + ++ P L + + L +
Sbjct: 12 LLALVFPFFRILAFLHFCPVLDNRAFSRRIKTVLALALAAIITPMLPEKV-LITELMSMR 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L+ +L G + G+ +++ + LQ G ++S +GL + + + T ++ +I
Sbjct: 71 TVLLIGEQLLWGMLFGMAMQLVFVALQTAGHILSMNMGLGMAMMNDPVNGSSTTVISQMI 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
L +V+D H V L K + PIGQ +N + V L ++ P
Sbjct: 131 YTFCGLLFFVMDGHLLVVTILYKGFVWWPIGQAINKPTLL-LIVQSLGWIMSSATLIAIP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
F ++ GLLN++ P + ++ + P + G L + + + I + +
Sbjct: 190 TTFVMLIVQGGFGLLNRVSPTLNLFSLGFPISMLFGLLCISMMMTNIPDHYLNL 243
>gi|59712447|ref|YP_205223.1| flagellar biosynthesis protein FliR [Vibrio fischeri ES114]
gi|59480548|gb|AAW86335.1| flagellar export pore protein FliR [Vibrio fischeri ES114]
Length = 260
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 92/239 (38%), Gaps = 1/239 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ + +M++ ++ ++RL ++ + ++P + V+
Sbjct: 11 FIATYFWPYTRISAMLMVMSVFGARFVSPRIRLYLGLSITFAVMPAIPAMPPGIQLVSFQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G G++ T G ++ L + + ++ L L
Sbjct: 71 GFMTTA-EQIIIGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +L D H ++ +V S+ T+P+G + S + L L +S
Sbjct: 130 FMFLSILFFLGTDGHLKMINFVVMSFTTLPVGVGKLTSVDYQSMASWLGIMMKAGLSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+S G++ + PQ+ I+ + + + +G L I + + +L
Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIILGLFNHYDLHWLRA 248
>gi|188526977|ref|YP_001909664.1| flagellar biosynthesis protein FliR [Helicobacter pylori Shi470]
gi|188143217|gb|ACD47634.1| flagellar biosynthesis protein FliR [Helicobacter pylori Shi470]
Length = 255
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRFKEEISLAF 248
>gi|299066524|emb|CBJ37714.1| putative flagellar biosynthetic protein fliR [Ralstonia
solanacearum CMR15]
Length = 282
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 96/240 (40%), Gaps = 1/240 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW-DTIDLQNFVNRA 67
+ ++ L+ R+G+ + P L + +P VR+ +A + L L + +
Sbjct: 14 LETVLLLSLRLGAAFLATPMLPAAGVPTVVRVLVVLALATALSFSLPGADMAQSVPGHLG 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + EL LG L I + G ++ IG + + + + +++
Sbjct: 74 SLVEAALSELALGMTLALGILLAFAAFTTAGQLLDVQIGFGMSQVLDPATNARMPIFSTV 133
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ ++++ HH + L S P+ Q F + + + + L++
Sbjct: 134 YNQAAVVVFFLVNGHHALLRGLAYSLERFPLAQPWPFASALAPITKQVVGLLGLSFALAA 193
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P +F ++ +++G++ K +PQ+ + + P I +G + L I + + +
Sbjct: 194 PVVFCLLLTEMALGVVAKNLPQMNMLTMGIPVKIVVGVIAGSLWFAGIGNMMTRVYDEIY 253
>gi|109946963|ref|YP_664191.1| flagellar biosynthesis protein FliR [Helicobacter acinonychis str.
Sheeba]
gi|109714184|emb|CAJ99192.1| flagellar biosynthesis protein [Helicobacter acinonychis str.
Sheeba]
Length = 255
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPES---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + + + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASVYDPISGAQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFIIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L + I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIVSAIMGRFKDEISLAF 248
>gi|320182733|gb|EFW57617.1| Flagellar biosynthesis protein FliR [Shigella boydii ATCC 9905]
Length = 261
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+ T + + L L +
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + ++ H F F
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMSLVAPFCEHLFSEMF 248
>gi|225569960|ref|ZP_03778985.1| hypothetical protein CLOHYLEM_06055 [Clostridium hylemonae DSM
15053]
gi|225161430|gb|EEG74049.1| hypothetical protein CLOHYLEM_06055 [Clostridium hylemonae DSM
15053]
Length = 257
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/246 (18%), Positives = 103/246 (41%), Gaps = 2/246 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M ++ + L++ R+ + L P L IP + A+ ++V+ P
Sbjct: 1 MLLAGTPEFLVFTLVLMRMSGFVFLNPILGRKNIPAVFKTGLALVLALVVYP--QAEPAG 58
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + Y+ L++ E LG + G +++++ + + F GSVI +GL++ T +
Sbjct: 59 EEVTSAVVYAVLLLKEFALGYLLGFVMQLFDMVVSFAGSVIDFQMGLSMATVYDAQNGTQ 118
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+++ I LL + +D H + L+ S +P + + + +
Sbjct: 119 IALTGNILQIYYLLLFFAVDGHLALLKILMTSQDIVPYAALKLGTGSAQAVLQIFTECVV 178
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ ++L+ P + F + ++ GLL +++PQI ++ +S + +G + I
Sbjct: 179 LAVKLAFPIIAFEFLVEVATGLLMRIIPQINLFVMSIQLRVIIGLAMMVFLISPAGDYLK 238
Query: 241 HSFLYG 246
Sbjct: 239 GIISQM 244
>gi|259908770|ref|YP_002649126.1| flagellar biosynthesis protein FliR [Erwinia pyrifoliae Ep1/96]
gi|224964392|emb|CAX55901.1| Flagellar biosynthesis protein [Erwinia pyrifoliae Ep1/96]
gi|283478746|emb|CAY74662.1| Flagellar biosynthetic protein FliR [Erwinia pyrifoliae DSM 12163]
Length = 261
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ LF + RV + IM P LS I +V++ + + VL+P L T +
Sbjct: 12 WISQLFWPLARVLALIMTAPLLSEKSISRKVKIGLGVMITWVLIPSLPPT---NVTLFSV 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ ++ +G G ++ ++ G VI +GL+ T L L
Sbjct: 69 GGFWLLIQQILIGVAIGFTMQFAFAAVRTAGEVIGLQMGLSFATFFDPGSRLNMPVLARF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + H + + S+ T+PIG E GN F + F+ +RL+
Sbjct: 129 LDMLAMLLFLSFNGHLWLISMVADSFQTLPIGGEPLNGNAFMALTKAANIIFLNGMRLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+ +GLLN++ PQ+ ++ I P + +G +F+ L + ++ H F F
Sbjct: 189 PLITLLLTLNLGLGLLNRVSPQLSVFAIGFPVTLSVGMIFIILMMPLLAPFCEHLFSEIF 248
>gi|297620335|ref|YP_003708472.1| putative type III secretion inner membrane protein SctT [Waddlia
chondrophila WSU 86-1044]
gi|297375636|gb|ADI37466.1| putative type III secretion inner membrane protein SctT [Waddlia
chondrophila WSU 86-1044]
Length = 281
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 7/246 (2%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
P + + LFL + R+ I L P +P V+L FA++ + +P L +
Sbjct: 16 IEDPGAVFILLFLFLARILPIIALSPFFGARVLPHPVKLAFAISLFAIFVPHLL-VVTQS 74
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
L ELF+G + G LI + +Q G +I G +
Sbjct: 75 KLSFTPLSLALFAKELFVGYLIGFLISIPFTIVQTAGMLIDHQRGGASLMVNDPTIQNQS 134
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG------NIFSSFVNML 175
+PL ++ ++ + ++ID A+ SY IP + N +L
Sbjct: 135 SPLGTMFNMVLIYIFFMIDGPFYFIDAINTSYSAIPPDRFFNPQFFDKSSAFSEIAFQLL 194
Query: 176 QTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
++ ++ +SP L ++ ++ +G+ N+L Q+ I F+ P LG + + +++
Sbjct: 195 NNAMVLAIQFASPALIAILMTDVFLGIANRLATQVQITFLGLPLKSLLGLTLITIGWKVL 254
Query: 236 VYQFSH 241
+ Q +
Sbjct: 255 INQMAE 260
>gi|254720780|ref|ZP_05182591.1| flagellar biosynthesis protein FliR [Brucella sp. 83/13]
gi|265985839|ref|ZP_06098574.1| flagellar biosynthetic protein FliR [Brucella sp. 83/13]
gi|306840129|ref|ZP_07472914.1| flagellar biosynthetic protein FliR [Brucella sp. NF 2653]
gi|264664431|gb|EEZ34692.1| flagellar biosynthetic protein FliR [Brucella sp. 83/13]
gi|306404774|gb|EFM61068.1| flagellar biosynthetic protein FliR [Brucella sp. NF 2653]
Length = 255
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 75/237 (31%), Positives = 136/237 (57%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + ++++ + L
Sbjct: 70 PWMLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSVTENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246
>gi|190574227|ref|YP_001972072.1| putative flagellar biosynthetic protein [Stenotrophomonas
maltophilia K279a]
gi|190012149|emb|CAQ45772.1| putative flagellar biosynthetic protein [Stenotrophomonas
maltophilia K279a]
Length = 257
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 88/237 (37%), Gaps = 3/237 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ ++ + R+G+ M +P + +P ++R+ A +I L P L D F
Sbjct: 10 GMIGTVLWTMLRIGAVAMAMPMVGTRAVPARIRVILAGTLAIALAPLLPPVPDWTGFD-- 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL +G G L+R+ G +I+ GL +
Sbjct: 68 AATVLTIARELAIGVSIGFLLRLVFEAGAMAGELIAQGTGLAFAQMSDPLRGGTSGVIGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
++ L + + H + +V SY +PIG L + F S L T L L
Sbjct: 128 WFYLLFGLLFFTANGHLALISLVVDSYRALPIGAPLPDPHAFFSIAPTFLLTVLRGALTL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + N++ G+L + P + + P + LG L L +
Sbjct: 188 AIPLTVAMLAVNLAFGVLARAAPALNPIQLGLPVSLLLGLFLLALLAGEMGPPVQRL 244
>gi|283850713|ref|ZP_06368000.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. FW1012B]
gi|283573956|gb|EFC21929.1| flagellar biosynthetic protein FliR [Desulfovibrio sp. FW1012B]
Length = 259
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ S L + R+ + LLP + +P V+ + ++ + P L L N
Sbjct: 10 LVFSFLLTLMRISVVLFLLPFFGANLLPNPVKGALCLLLTLAVFPMLSFPAALM-PANPW 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + + E+ +G + +L+ +Q G+++ ++G +L S+ +E+ L L
Sbjct: 69 TLALMFLGEVIMGLLLDILVMFLFSAVQCAGAIMGFSMGFSLMNSIDPMTGASESGLGHL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + ++ H + + +S+ +P G + + F++ L++++
Sbjct: 129 MNQVTTMLFLCLNGHLFLLDCMAQSFTLVPPGGLFLSPALGEHLIAFSGQIFVMALKIAA 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + + ++++ L+ + PQ+ + FI P I +G LF+ L +
Sbjct: 189 PIMASIFMVDLALALVARAAPQMNVLFIGFPLKISVGFLFMTLVFGALAVYVGQYIAE 246
>gi|167630309|ref|YP_001680808.1| flagellar biosynthetic protein flir [Heliobacterium modesticaldum
Ice1]
gi|167593049|gb|ABZ84797.1| flagellar biosynthetic protein flir [Heliobacterium modesticaldum
Ice1]
Length = 266
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 99/240 (41%), Gaps = 4/240 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L L++ RV ++L P + ++ + +++L + D Y
Sbjct: 15 LLLMMIRVAGILVLAPVFNFPGFNNLAKIGLSFMIALILFLSMPDGALPVPPQELFGYVI 74
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V EL LG G ++++ + G +I +G + + + I+
Sbjct: 75 VVAQELLLGLAIGFILQLLFAAILTAGHLIDIQLGFGIVNIIDPLWGAQVPMTGVFLQIL 134
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNF----GNIFSSFVNMLQTTFMIMLRLSS 187
LL + D H + L S+ +P G+I V ++ +I ++L+
Sbjct: 135 ALLIFVIFDGHLLLIQVLADSFRILPAAGSPFSLALAGSISDFIVRLVSGVLLIGVQLAM 194
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ +I++GL+++ VPQ+ ++ I P I +G FL +++ + + F F
Sbjct: 195 PIIGIILINDIALGLVSRTVPQMNLFVIGIPLKIIVGVAFLWITLPFYIDGLNRLFTLSF 254
>gi|154175030|ref|YP_001407663.1| flagellar biosynthesis protein FliR [Campylobacter curvus 525.92]
gi|112803591|gb|EAU00935.1| flagellar biosynthetic protein FliR [Campylobacter curvus 525.92]
Length = 253
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 5/236 (2%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ L+ R+ I+ P S + IP+ R IV P NF
Sbjct: 13 ITFMLLFARLSGLIVFFPFYSYNQIPLTARTLLVFMLCIVFFPMSHAHEHAINF-----L 67
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ E LG GL++ + LQ G IS +G ++ T + + + ++I
Sbjct: 68 FVEILSEAMLGLCAGLMLTIVFATLQMAGEQISMVMGFSMATVLDPQTGASSPVIANMIN 127
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ LL + D HH + S +P+G + S + + FM LS P
Sbjct: 128 FLALLTFLMFDGHHLLLQFYAASLAHVPLGDFYPSAGVMSYALKIFANLFMFGFILSFPI 187
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ ++ + G+L K +PQ + + P I +G L + ++ L
Sbjct: 188 IALSLLSDSIFGMLMKTMPQFNLLVVGYPIKITIGFAVLIAILAGMMKIVGDMLLQ 243
>gi|302387777|ref|YP_003823599.1| flagellar biosynthetic protein FliR [Clostridium saccharolyticum
WM1]
gi|302198405|gb|ADL05976.1| flagellar biosynthetic protein FliR [Clostridium saccharolyticum
WM1]
Length = 253
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
MM LI R+ I+L P L P V+ M F++++ F + VN
Sbjct: 5 GQMMLFSLIFMRMSGFILLNPILGRRNTPNVVKGGMIMVFTLLVYSFSAAQVP--EPVNS 62
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ L++ E +G G ++ ++ + + F G +I +GL++ T + S
Sbjct: 63 IEFAVLMIKEFIMGYTIGFVMDLFLMVITFAGHIIDFQMGLSMATIYDPQSNTQIAITGS 122
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L +L + +D H + L+KS T+P GQ + + + + + ++ ++ S
Sbjct: 123 LWNAYFMLLFFAVDGHLALIKLLIKSAETVPYGQVVIGTKVAWAMIEVFIQCIIMAIKFS 182
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + I++G+L K++PQI ++ ++ + +G L L +
Sbjct: 183 LPIVAIEFITEIAVGILMKMIPQINVFVVNIQAKLVIGLLMLIFLFSPMSDYLGDVINQM 242
Query: 247 F 247
Sbjct: 243 L 243
>gi|289578416|ref|YP_003477043.1| flagellar biosynthetic protein FliR [Thermoanaerobacter italicus
Ab9]
gi|297544692|ref|YP_003676994.1| flagellar biosynthetic protein FliR [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528129|gb|ADD02481.1| flagellar biosynthetic protein FliR [Thermoanaerobacter italicus
Ab9]
gi|296842467|gb|ADH60983.1| flagellar biosynthetic protein FliR [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 260
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 101/244 (41%), Gaps = 3/244 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + L+ R+ +L P +P ++ ++++ +
Sbjct: 3 MIQYLLQSVQVFILLFVRMLGIFILTPFFGTKNVPTIFKIGLGFFAAVIVFDTMGSV--D 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
N Y +V+ E +G V GL + + G +I +G + + I
Sbjct: 61 LQTNNVFDYFIVVISEFTVGLVIGLASMISFSAIHLAGQLIDYQLGFGIVNILDIHSEAQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTF 179
+ + I I+ +L +++ H+ +F L KS IPIG+ N + M+ F
Sbjct: 121 VPLMGNFIYILTILIFMLMNGHYILFTMLAKSVDIIPIGEVAFNLSGMSQVMTKMVSDMF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++ R+S+P + ++ ++ +G++++ +PQ+ ++ I P I +G L + + + +
Sbjct: 181 ILGFRISAPIILTTLLSDLVLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLAII 240
Query: 240 SHSF 243
F
Sbjct: 241 DFMF 244
>gi|317181482|dbj|BAJ59266.1| flagellar biosynthesis protein FliR [Helicobacter pylori F57]
Length = 255
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FIV 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|170021381|ref|YP_001726335.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739]
gi|169756309|gb|ACA79008.1| flagellar biosynthetic protein FliR [Escherichia coli ATCC 8739]
Length = 260
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + I +
Sbjct: 12 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 130 INVYAILLFFAMDGHLLLVSVLFKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 243
>gi|238752377|ref|ZP_04613855.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia rohdei ATCC
43380]
gi|238709418|gb|EEQ01658.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia rohdei ATCC
43380]
Length = 267
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 96/235 (40%), Gaps = 3/235 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +L L + R +++LP + + +R A ++ + P T +
Sbjct: 6 HWLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNGLVFAIALPVTPLFSPTSLVAQDTL 65
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A++ L M EL +G + G + + + G +I T G + T S + +
Sbjct: 66 TAWFWVLCM-ELLIGVMIGFVAAIPFWAIDMAGFMIDTLRGATMSTLFNPSMGMESSIFG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLR 184
L + + + + V AL SY +P G + + N Q + + L
Sbjct: 125 VLFTQLLTVLFLISGGFNLVLSALYSSYDILPAGTIIQPSSAMLQFLQNEWQLMYELCLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P L ++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ +
Sbjct: 185 FALPALLVMVLADLSLGLINRSSQQLNVFFLAMPIKSALALFLLVISLPYALHHY 239
>gi|209545553|ref|YP_002277782.1| putative flagellar biosynthetic protein FliR [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533230|gb|ACI53167.1| putative flagellar biosynthetic protein FliR [Gluconacetobacter
diazotrophicus PAl 5]
Length = 253
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 105/233 (45%), Gaps = 3/233 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD---TIDLQNFVNRAY 68
+++CRV + +M PGL + PM+VR A++ ++ +LP + D + +
Sbjct: 2 FLVVLCRVSALVMAAPGLGETTSPMRVRAGIAVSATVAILPVVQDRLVEVSGTALRMPSV 61
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+V+ EL G G L R+ T+ + V++ GL + T ++ +
Sbjct: 62 AIAVVVGELLCGVFIGWLARLVTMAISIAMQVVAVFTGLASVLQPDSELGASSTAISHMA 121
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + + A+ SY P G G++ S TF + L+L++P
Sbjct: 122 SMLIPVIFLSTGLYALPLAAITGSYSLFPPGHMPMVGDMARSVTEATSQTFALALQLAAP 181
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
F+ ++ +G+LN+L+P I +Y I+ P + G + L + I+++ +
Sbjct: 182 FVLIGTLWPAMLGVLNRLLPSIQVYSIAMPAQLLGGVILLAMLIQVMTGVWQE 234
>gi|15644802|ref|NP_206972.1| flagellar biosynthesis protein FliR [Helicobacter pylori 26695]
gi|2313256|gb|AAD07238.1| flagellar biosynthetic protein (fliR) [Helicobacter pylori 26695]
Length = 255
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|254778887|ref|YP_003056992.1| flagellar biosynthesis protein FliR [Helicobacter pylori B38]
gi|254000798|emb|CAX28722.1| Flagellar biosynthetic protein FliR; putative membrane protein
[Helicobacter pylori B38]
Length = 255
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|207092537|ref|ZP_03240324.1| flagellar biosynthesis protein FliR [Helicobacter pylori
HPKX_438_AG0C1]
Length = 255
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|239834419|ref|ZP_04682747.1| flagellar biosynthetic protein FliR [Ochrobactrum intermedium LMG
3301]
gi|239822482|gb|EEQ94051.1| flagellar biosynthetic protein FliR [Ochrobactrum intermedium LMG
3301]
Length = 255
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 78/237 (32%), Positives = 137/237 (57%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PGLS + IP+QVRL A+A S +LP + I + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGLSSARIPLQVRLFIALACSFAVLPLVLQRIITVVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L+ E+F+G V G+L +Y LQF S ++ +IG + + I++S + L
Sbjct: 70 PLTLFRLMASEIFIGAVIGILAHIYFWALQFMASTMAVSIGYSGSPADAITESEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L ++ D H ++F AL+ SY IP+ + + F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFITDMHLEIFRALLNSYVAIPVDGQFRPDAVMIDFTDALSGAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YF+S P+++G G L + + ++ F++
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPTIPVYFVSMPFVLGGGLLVVYFILPELLRFFTNE 246
>gi|229827382|ref|ZP_04453451.1| hypothetical protein GCWU000182_02770 [Abiotrophia defectiva ATCC
49176]
gi|229788320|gb|EEP24434.1| hypothetical protein GCWU000182_02770 [Abiotrophia defectiva ATCC
49176]
Length = 260
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 2/235 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
IV RV + + P + IP Q+++ F + FS +L L T + ++
Sbjct: 15 FLFIVTRVSAFVFTSPFFNFGSIPRQLKVAFTLIFSALLYLTLPYT--EVRYPGIIGFTF 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+VM E G + G + L FTG +I IG + T + + +L
Sbjct: 73 MVMSEALAGGMLGYFTNIVMTILNFTGRLIDMEIGFAMVTMFDPVFKVDTSVSGNLYNYF 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + +FHH A V +Y IPIG+ + N + + L F+I +RL P
Sbjct: 133 TILLLLIGNFHHYFLAAFVDAYKVIPIGRAMVNANTVNVIADFLGNYFLIAMRLMLPIYA 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
++ N +G++ K+ PQ+ ++ + + +G + L ++ +
Sbjct: 193 TMLLVNAVLGVMAKVAPQMNMFVVGIQLKLLVGLAVMVLMTSMLPGVADYLTKEM 247
>gi|308183969|ref|YP_003928102.1| flagellar biosynthesis protein FliR [Helicobacter pylori SJM180]
gi|308059889|gb|ADO01785.1| flagellar biosynthesis protein FliR [Helicobacter pylori SJM180]
Length = 255
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGVILIISAIMGRFKEEISLAF 248
>gi|317179432|dbj|BAJ57220.1| flagellar biosynthesis protein FliR [Helicobacter pylori F30]
Length = 255
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNATYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|154253016|ref|YP_001413840.1| flagellar biosynthesis protein FliR [Parvibaculum lavamentivorans
DS-1]
gi|154156966|gb|ABS64183.1| flagellar biosynthetic protein FliR [Parvibaculum lavamentivorans
DS-1]
Length = 253
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 118/236 (50%), Gaps = 1/236 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ R+ + IML+P L + IP QVRL A+ S V++P + +
Sbjct: 12 FTFMLVFSRLAAMIMLMPALGEASIPAQVRLMLALLLSFVMMPLVAGSYGAI-PATVPGL 70
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+V E+ +G G R+ L G++I+ + L+ ++ S + + +
Sbjct: 71 VFIVCSEIAVGLFIGTAARLIMSALHVAGNIIAAQMSLSFAMNVDPSQGQQGVLIANFLS 130
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++G+ ++ + H + A+ SY G+ + G+ + V M+ +F + L+L++PF
Sbjct: 131 LLGVTLIFATNLDHVLIAAMRDSYELFKPGEPIPVGDFLAMAVKMVSGSFRLGLQLAAPF 190
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
L F ++F + IG+L++L+PQI I+FI+ P I LG + L L + ++ F F
Sbjct: 191 LVFGLIFYLGIGILSRLMPQIQIFFIAMPANIALGFILLLLLLGALMTWFLQGFEQ 246
>gi|308063034|gb|ADO04921.1| flagellar biosynthesis protein FliR [Helicobacter pylori Sat464]
Length = 255
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIISAIMGRFKEEISLAF 248
>gi|217031933|ref|ZP_03437435.1| hypothetical protein HPB128_3g52 [Helicobacter pylori B128]
gi|298736884|ref|YP_003729414.1| flagellar biosynthetic protein FliR [Helicobacter pylori B8]
gi|216946402|gb|EEC25007.1| hypothetical protein HPB128_3g52 [Helicobacter pylori B128]
gi|298356078|emb|CBI66950.1| flagellar biosynthetic protein FliR [Helicobacter pylori B8]
Length = 255
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|312884813|ref|ZP_07744505.1| putative flagellar biosynthetic protein FliR [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367465|gb|EFP95025.1| putative flagellar biosynthetic protein FliR [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 258
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 103/242 (42%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
++ L+ R+G+ ++ +P S IP+ VR FA+A +V + +
Sbjct: 9 SQMLGQLWWPFFRIGTALISMPFFGDSLIPVWVRSLFALAIVVVSASLMPAMPKVDLISF 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A L + ++ G GL++ G ++S +GL + + L+ L
Sbjct: 69 SA--IALALEQVLWGLFFGLILHFLFAVFTTLGQIVSMQMGLGMAIMNDPVNGLSVPILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L I L ++ H + LV+S+ P+G L ++ V+++ F + L
Sbjct: 127 RLFLIFCTLLFLSLEGHLIIIDVLVQSFVIWPVGSGL-SALSLTNLVHLMTWMFASSVAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ NIS G++N+ P + +Y + P + LG + +SI + +++
Sbjct: 186 ALPAIIAMLLANISFGVMNRAAPALNVYALGFPMTMLLGLFSILISISGVPDKYAELVND 245
Query: 246 GF 247
Sbjct: 246 TL 247
>gi|294636882|ref|ZP_06715212.1| flagellar biosynthetic protein FliR [Edwardsiella tarda ATCC 23685]
gi|291089912|gb|EFE22473.1| flagellar biosynthetic protein FliR [Edwardsiella tarda ATCC 23685]
Length = 261
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ F R+ + P L IP +VR+ A + ++ P L T +
Sbjct: 12 LLGQFFWPFVRLLALYSTAPLLGEKAIPRKVRIALAALTAFLIAPQLPPTT---ITLASG 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ +GC GL +++ ++ G VI +GL+ T S L L
Sbjct: 69 GALWLAIQQILIGCAIGLTMQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H + L S+ T+P+ GN F + F+ + L+
Sbjct: 129 LNLLMLLLFLCFNGHLWIISLLADSFHTLPLSTAPLAGNGFLALAQSGHLIFLNGMMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ + P + +G L L + I ++ H F
Sbjct: 189 PLITLLLTLNMALGLLNRMTPQLSIFVVGFPLTLTIGMLTLGMLIPMLAPFTEHMLQTLF 248
>gi|291617860|ref|YP_003520602.1| FliR [Pantoea ananatis LMG 20103]
gi|291152890|gb|ADD77474.1| FliR [Pantoea ananatis LMG 20103]
Length = 261
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 101/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + R+ + + P LS + +V++ A + +L+P L + +
Sbjct: 11 HWVSQFFWPLVRILALLATAPVLSEKAVSKRVKIGLAAMITWILIPNLP---PVNVTLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ ++ +G G ++ ++ G +I +GL+ T + L L
Sbjct: 68 PAGFMLLIQQMLIGIAIGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPASRLNMPVLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ +L ++ ++ V + + + + G F + Q F+ + L+
Sbjct: 128 FLDMLAMLFIFDFQRSPVAYFPAVGQFSYVAYRRRASSGKCLYGFGEIRQHDFLNGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+ +GLLN+L PQ+ I+ I P + +G L + L + ++ H F
Sbjct: 188 LPLIVLLLTINMVLGLLNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFGEI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|108562594|ref|YP_626910.1| flagellar biosynthesis protein FliR [Helicobacter pylori HPAG1]
gi|107836367|gb|ABF84236.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
Length = 255
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLRAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|317179977|dbj|BAJ57763.1| flagellar biosynthesis protein FliR [Helicobacter pylori F32]
Length = 255
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|304316891|ref|YP_003852036.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778393|gb|ADL68952.1| flagellar biosynthetic protein FliR [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 260
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 103/237 (43%), Gaps = 4/237 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
++ R+ +L P +P ++ A SI++ + ID N Y
Sbjct: 14 FLIVFVRMLGIFILTPLFGTRSLPSMFKIGLAFFTSIIMFDLVKVNIDANNL---YQYVV 70
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V E +G + GL V + G +I +G ++ + + + + + I+
Sbjct: 71 IVFNEFLVGLLIGLASMVSFSAIYLAGQIIDYQLGFSIVNVLAAGEETQVPLVGNFVYIL 130
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF-SSFVNMLQTTFMIMLRLSSPFL 190
LL +I+ HH++F L +SY IP+G F ++ F++ R+S+P +
Sbjct: 131 TLLLFLLINGHHKLFVILFQSYSLIPVGTAFLHSESINVVFTKIVSDMFVLGFRISAPIV 190
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I++ ++++ +PQ+ ++ I P I +G L + + + + F +
Sbjct: 191 LSTLLTDITLSIISRTIPQLNVFMIGMPIKIFIGIFTLFIMLPMYLAIIDVLFNGMY 247
>gi|257876005|ref|ZP_05655658.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus
EC20]
gi|325567517|ref|ZP_08144184.1| flagellar biosynthetic protein [Enterococcus casseliflavus ATCC
12755]
gi|257810171|gb|EEV38991.1| flagellar biosynthetic protein fliR [Enterococcus casseliflavus
EC20]
gi|325158950|gb|EGC71096.1| flagellar biosynthetic protein [Enterococcus casseliflavus ATCC
12755]
Length = 249
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 105/231 (45%), Gaps = 4/231 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + LI CR+ + ++L P S P ++ MA +++ LP +L F+
Sbjct: 4 IQATVLIFCRILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPAIPELSLFM---- 59
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ V+ E+ G G L ++ G++ G +I +G ++ + + +A +
Sbjct: 60 LTVFVIKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTY 119
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + + +D HH++ AL+ S+ +P+G + G V + ++ + L++P
Sbjct: 120 YWLTIAVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAP 179
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ ++ ++ +G++++ +PQI I +S + + L + ++
Sbjct: 180 MIIALLLVDLVLGVISRSIPQINILMMSLSMKTAISFVVFLLLLPNVLSYL 230
>gi|332673015|gb|AEE69832.1| flagellar biosynthetic protein FliR [Helicobacter pylori 83]
Length = 255
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSTIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEETSLAF 248
>gi|332701285|ref|ZP_08421373.1| flagellar biosynthetic protein FliR [Desulfovibrio africanus str.
Walvis Bay]
gi|332551434|gb|EGJ48478.1| flagellar biosynthetic protein FliR [Desulfovibrio africanus str.
Walvis Bay]
Length = 263
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 99/238 (41%), Gaps = 1/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+S L + R+ + ++P P+ ++ + +I L P L Q N
Sbjct: 11 FLSFLLTLMRISLVLFIMPFFGGKVTPVPLKAALCLILTIALWPTLSF-PGQQLPANTWA 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+++ E+ LG V G+++ V +Q GS+I +G ++ E+ +
Sbjct: 70 IVVMLIGEITLGLVMGIVVNVLFAAVQTGGSLIGFQMGFSMVNVADPMTGTNESITGHFM 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + ++D H + AL +S+ IP G + + M F++ +++++P
Sbjct: 130 YMVTFMTFLILDGHLLLLRALAESFQRIPPGGLYLSPALAREVLGMSSQIFVLGIKIAAP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + +++I L+ + PQ+ I P I G LFL L I+ +
Sbjct: 190 VMVAVFLVDLAIALVGRAAPQMSILSFGFPLKIITGFLFLGLMFTIMARYVGQFIINM 247
>gi|261839034|gb|ACX98799.1| flagellar biosynthesis protein FliR [Helicobacter pylori 52]
gi|315586173|gb|ADU40554.1| flagellar biosynthetic protein FliR [Helicobacter pylori 35A]
Length = 255
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|297569687|ref|YP_003691031.1| flagellar biosynthetic protein FliR [Desulfurivibrio alkaliphilus
AHT2]
gi|296925602|gb|ADH86412.1| flagellar biosynthetic protein FliR [Desulfurivibrio alkaliphilus
AHT2]
Length = 263
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+M + +++ RVG + L+P LS +P QV++ + S+VL P +
Sbjct: 14 LMRVLIVMTRVGPLLFLMPVLSARGVPAQVKILLVVMTSLVLAPVV-PVSSADLPDTAVG 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ +E+ + L R ++ G V+ +G+ + M +P+ L
Sbjct: 73 FGVFAALEITFAAILALFARFVFSAVETAGQVVGVQMGMGMAGVMDPQFGNQVSPVGMLW 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRLSS 187
+ +L ID HH F A+V+SY + GQ ++ + ++ F++ +++ +
Sbjct: 133 SVAAILLFLAIDGHHLFFAAMVRSYQWVGPGQLAAVSHLTYQGMMDGAAQMFVLAIKIMA 192
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P ++ +G++ K VPQIPI + P I LG + LS+ V + F
Sbjct: 193 PASATLFFSHVGMGIIAKTVPQIPILIVGMPMNIALGMMMAGLSMGYFVPVMLNHFEM 250
>gi|217033997|ref|ZP_03439419.1| hypothetical protein HP9810_891g1 [Helicobacter pylori 98-10]
gi|216943505|gb|EEC22956.1| hypothetical protein HP9810_891g1 [Helicobacter pylori 98-10]
Length = 255
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV S + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSSVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + V F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|317176989|dbj|BAJ54778.1| flagellar biosynthesis protein FliR [Helicobacter pylori F16]
Length = 255
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|209963537|ref|YP_002296452.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW]
gi|209957003|gb|ACI97639.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW]
Length = 251
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 54/238 (22%), Positives = 113/238 (47%), Gaps = 1/238 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + L++ RVG+ + +LPG +PM+ R+ A+A ++ L + +
Sbjct: 8 SGEIYGVLLVLVRVGAALSMLPGFGEMAVPMRTRMAAALALALALAAAVPG-LPAVPPAG 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ E G V G+ R+ LQ G +I+ + L+ ++ + + L
Sbjct: 67 PGELLRHIVGEAMAGAVIGIGARILFAALQIAGQIIAQSASLSNIFALPGTGFEGGSVLG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ + + GL+ ++V D HH + AL+ SY +P + ++ + +F + ++
Sbjct: 127 AYLMMGGLVLVFVTDLHHAMIRALLDSYQLMPAATIPDPRSLGKLTAETVNLSFRLAVQF 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+PFL + +N+ +GL+N+ +P ++F+ P I G + L L I+ F +F
Sbjct: 187 SAPFLLLGLAYNVGLGLVNRAMPHFAVFFVGLPVSILGGFIVLALVAAAILGGFLDAF 244
>gi|319406958|emb|CBI80595.1| Flagellar biosynthetic protein fliR [Bartonella sp. 1-1C]
Length = 261
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 74/245 (30%), Positives = 130/245 (53%), Gaps = 1/245 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ S E ++ LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + ++ +
Sbjct: 11 SFSIEQLVTIALLIFARVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTESFKVL 70
Query: 62 NF-VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
N A + + E+ +G G++ Y LQF S+I +IG + Q I +S
Sbjct: 71 GDKPNLALLVRSLFAEMLIGSTFGIIAHAYLWALQFMASIIGMSIGFSGQPGHSIIESTP 130
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E+ + +++ ++ + D H L+ SY +P+ N + + L F+
Sbjct: 131 ESHVANVLVFAAIILFFASDLHIITIQGLLASYDIVPLAFIPNPEAALTDYHEALSRAFL 190
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +++PF+ + I+ NI+IGLLNKL P IP+YFIS P+++ G L + I +++ F+
Sbjct: 191 TTLSIAAPFIIYAILINITIGLLNKLTPTIPVYFISLPFVMCGGLFLLYILIPELLHLFN 250
Query: 241 HSFLY 245
F
Sbjct: 251 SEFRD 255
>gi|288573011|ref|ZP_06391368.1| type III secretion system inner membrane R protein
[Dethiosulfovibrio peptidovorans DSM 11002]
gi|288568752|gb|EFC90309.1| type III secretion system inner membrane R protein
[Dethiosulfovibrio peptidovorans DSM 11002]
Length = 260
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 95/237 (40%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L+ R I P S P+ + F+++ +P L + F
Sbjct: 10 VVPLYMLVSIRFLGIIFTAPVFLASSFPIPCLYFLSFFFALITVPQLGGGLPEVLFSGVL 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + EL +G L LQ G +I T +GL + + + ++ + L
Sbjct: 70 PFLLAALRELLVGASIAFLASAPFYALQIAGRMIGTRMGLAMVSVLDPISQSQDSIIGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+IGL + H + AL++S+ +P+G+ + L F++ + +
Sbjct: 130 QILIGLWFFLYWNGHILLVRALMESFRLLPLGEMGLAVSSDLGLAEWLGKLFVMAFKFAI 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
PF ++ +I +G L + VPQ+ ++ + P IGLG L + + + V
Sbjct: 190 PFYGALLLADIGLGFLARTVPQMNVFILGLPLKIGLGLFLLMVVLPMTVDIMHDQIE 246
>gi|76874664|emb|CAI85885.1| flagellar biosynthetic protein [Pseudoalteromonas haloplanktis
TAC125]
Length = 231
Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 2/221 (0%)
Query: 26 LPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGL 85
+ GL +P ++++ A+ + V +P L F +V+ ++ +G G
Sbjct: 1 MAGLGAKNVPTRIKMGLAIVVTFVAVPMLPPATFTNLFS--FEMILVVIQQMLIGIAIGF 58
Query: 86 LIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQV 145
+ G +++ GL + + S+ L+ + I+ L +V + H +
Sbjct: 59 ASTLLLNTFVLAGQILAMQTGLGFASVVDPSNGLSVPAVGQFYLILATLLFFVFNGHLMM 118
Query: 146 FYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNK 205
+V S+ +PI + + V F L LS L +V N+S G++ +
Sbjct: 119 IQMVVHSFEVLPIDGNWWSVDHYWDIVTWGGWMFTTALVLSLAPLTAMLVINMSFGIMTR 178
Query: 206 LVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
PQ+ I+ I P+ + G + + ++ V QF +L
Sbjct: 179 AAPQLNIFSIGFPFTLVAGLIIIWATLGNFVSQFEFQWLKM 219
>gi|149200775|ref|ZP_01877750.1| Flagellar protein FliR [Roseovarius sp. TM1035]
gi|149145108|gb|EDM33134.1| Flagellar protein FliR [Roseovarius sp. TM1035]
Length = 273
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 92/241 (38%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+G+ ++ P + +I + VR+ ++ ++ L+ + I + ++
Sbjct: 22 GLALQFLFAMLRIGAFVLSAPLFAARFISLPVRIIISVCLTVPLMGQVP--IPEPDALSS 79
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + EL +G G+++++ G I+ GL L + + +
Sbjct: 80 LSSVVIALRELAIGLSAGMVLQILFAAAVMAGDRIANTAGLGLAAQVDPTSGSQSPVIGQ 139
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ L D H ++ SY IPIG + + + + F +L
Sbjct: 140 FFMLFLLAIFVTEDGHLAAIRLMLDSYRLIPIGTPIAGTVLIDASMEATTAMFRNAAQLM 199
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+ IG++ + P + ++ P + + L L++ + S
Sbjct: 200 MPVVSVLLLLNLVIGVITRSAPSLNLFAFGFPLTMTATLVLLFLTVTSLGPALSERVAQA 259
Query: 247 F 247
Sbjct: 260 L 260
>gi|209964222|ref|YP_002297137.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW]
gi|209957688|gb|ACI98324.1| flagellar biosynthesis protein FliR [Rhodospirillum centenum SW]
Length = 254
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 116/241 (48%), Gaps = 1/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L+ R+ + M++P + I ++RL FA+ + V+ P + +
Sbjct: 9 GSVFAFLLVFVRLAAAFMIIPAIGEQAISARIRLLFALVVAAVVTPVVRQYLP-PEPSAP 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + LV+ E+ +G G L RV L+ G +I+ +GL + + + P+ +
Sbjct: 68 AELAALVVSEILVGLFIGTLARVLLTALETGGFLIANQLGLAAAQAFNPALAAPGNPIGA 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+GI ++ ++ D HH + A+V SY L G+ + T+F I ++L+
Sbjct: 128 LLGIGAVVVIFATDLHHMLILAVVDSYTLFSPADGLPLGDATEHLAQTVNTSFAIGVQLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
PF +F + +GL+ +LVPQ+ ++F+ P I +GSL L LS+ ++ + F
Sbjct: 188 VPFFVIGFLFYLGLGLVARLVPQVQVFFVGLPIQIAIGSLMLSLSLSALMLFWLTHFEDQ 247
Query: 247 F 247
Sbjct: 248 L 248
>gi|167750710|ref|ZP_02422837.1| hypothetical protein EUBSIR_01688 [Eubacterium siraeum DSM 15702]
gi|167656389|gb|EDS00519.1| hypothetical protein EUBSIR_01688 [Eubacterium siraeum DSM 15702]
gi|291532048|emb|CBK97633.1| Flagellar biosynthesis pathway, component FliR [Eubacterium siraeum
70/3]
Length = 262
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 95/235 (40%), Gaps = 2/235 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI+CRV P S S P+++R +A +++ + +
Sbjct: 14 FLGFLLIMCRVSGIFSFNPIFSRSNFPVRLRAGTTIALAVLFASSMGNIKY--EPTGIFM 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+M EL LG + G ++ + G +I GL++ +M + ++ ++
Sbjct: 72 MLFDMMKELGLGLILGFMVNLILAVTISAGELIDYQTGLSMARAMDPATGVSMPLFANVY 131
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +L ++ + H SY T+PIG ++ + V T + ++L++P
Sbjct: 132 YYMFILYFFLTNGHLSYIKLFHISYETLPIGFSGFTADVPWALVTYFSTVLTLAVKLAAP 191
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + I +G+L K VP I I+ ++ + +G + + + +
Sbjct: 192 IIAIEFITEICLGVLMKAVPSIHIFALNIQLKVLIGLAAVLIMAQPMSDFIEKLM 246
>gi|238916766|ref|YP_002930283.1| flagellar biosynthetic protein FliR [Eubacterium eligens ATCC
27750]
gi|238872126|gb|ACR71836.1| flagellar biosynthetic protein FliR [Eubacterium eligens ATCC
27750]
Length = 257
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 103/234 (44%), Gaps = 2/234 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI+ R+ S + P +M+ +P +V++ F+ +I++ D + Y+
Sbjct: 13 FVLILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMS--VEYNGMIEYAI 70
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+V+ E+ +G + G + + F G +I IG+++ + + + + +
Sbjct: 71 IVVEEIIVGILLGAVSSFCVQIIMFAGKIIDMDIGISMAQLYDPTTRMQVGIMGNFYYYM 130
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + H + A+V++Y IPIG I++ + + F+I R++ P
Sbjct: 131 MMLLLIISGMHQYLVSAIVETYRVIPIGGVKFGAGIYTGIIGFVSDFFVIGFRIALPVFA 190
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ N + +L K+ PQ+ ++ + I +G + +I ++ +
Sbjct: 191 AILMLNCVLAILAKVSPQMNMFVVGMQLKIFVGIFVILFTISMLPSVSNFILDE 244
>gi|261837621|gb|ACX97387.1| flagellar biosynthetic protein [Helicobacter pylori 51]
Length = 255
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYAPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIIGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|90577373|ref|ZP_01233184.1| putative flagellar biosynthetic protein FliR [Vibrio angustum S14]
gi|90440459|gb|EAS65639.1| putative flagellar biosynthetic protein FliR [Vibrio angustum S14]
Length = 258
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + R+G+ ++ +P + IP+ VR A+A S + P + +
Sbjct: 10 ALLAQFWWPFFRIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTD--LLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + G + GL+I + G +IS +GL + + ++ L
Sbjct: 68 LSALMLAFEQAIWGLLFGLIIHFLFSIMTLLGQIISLQMGLGMAMMNDPVNGVSVAILGR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + L +D H V LV+S+ + P+G L ++ + + F L ++
Sbjct: 128 MFLLFSTLLFLALDGHLLVIDILVQSFTSWPVGSGLAVSSV-KQILALFGWMFSSALAIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ NIS G++N+ P + +Y + P + LG + +S+ + ++
Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPARYVEL 242
>gi|257871303|ref|ZP_05650956.1| flagellar biosynthetic protein fliR [Enterococcus gallinarum EG2]
gi|257805467|gb|EEV34289.1| flagellar biosynthetic protein fliR [Enterococcus gallinarum EG2]
Length = 249
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 104/231 (45%), Gaps = 4/231 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + LI CR+ + ++L P S P ++ MA +++ LP +L F+
Sbjct: 4 IQATVLIFCRILAFVVLCPIFSQQNFPSLAKIVIGMALTVLCLPTAPAIPELSLFMMT-- 61
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
V+ E+ G G L ++ G++ G +I +G ++ + + +A +
Sbjct: 62 --VFVIKEVLFGMAMGYLSQLVFTGVEIAGQLIDFQVGFSMAQAYDPTLQIASSQYGKTY 119
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + + +D HH++ AL+ S+ +P+G + G V + ++ + L++P
Sbjct: 120 YWLTIAVFFGLDLHHRLITALLLSFRIVPLGSVVIQGTTVEGIVKLFSQMMVMAVNLAAP 179
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ ++ ++ +G++++ +PQI I +S + + L + ++
Sbjct: 180 MIIALLLVDLVLGVISRSIPQINILMMSLSMKTAISFVVFLLLLPNVLSYL 230
>gi|239907022|ref|YP_002953763.1| flagellar biosynthetic protein FliR [Desulfovibrio magneticus RS-1]
gi|239796888|dbj|BAH75877.1| flagellar biosynthetic protein FliR [Desulfovibrio magneticus RS-1]
Length = 259
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 105/239 (43%), Gaps = 1/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ S L R+ + +LP + IP V+ F + S+ L P L +
Sbjct: 9 AMVFSFLLTFMRLSVVVFMLPFYGATLIPNVVKASFCLVLSMALWPRLAFA-GTALPASP 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + E+ +G + +L+R+ Q G+++ ++G +L S+ +E+ L
Sbjct: 68 WTIGLMFLGEVLIGLMLDILVRLLFSAAQAAGAIMGFSMGFSLMNSVDPMTGASESGLGH 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ + + ++ H + AL +S+ +P G L + + F++ ++++
Sbjct: 128 LMSQVATMLFLCLNGHLFLLSALAQSFEMVPPGGLLINAAVGEHLIVFTGQLFVMAIKIA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+P L + ++++ L+ + PQ+ + FI P + +G LF+ + + + L
Sbjct: 188 APILASIFLVDLALALVARAAPQMNVLFIGFPLKVSVGFLFMTMVFAAMTVVIENFLLD 246
>gi|87307410|ref|ZP_01089555.1| probable flagellar biosynthetic protein fliR [Blastopirellula
marina DSM 3645]
gi|87290150|gb|EAQ82039.1| probable flagellar biosynthetic protein fliR [Blastopirellula
marina DSM 3645]
Length = 267
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 104/236 (44%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ ++ RV + P +Y P +V+ A+ S+++ W +
Sbjct: 14 LFIFVTVLTRVSGMLATAPMFGSNYAPAKVKAFLAVTISMMITGLFWGE-KFPQPDHWMS 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y ++ ELF+G GL +R+ G+Q TG ++ GL++ + + + L L
Sbjct: 73 YLVVLGGELFIGISFGLGVRILFAGVQITGQMLGQIGGLSVADAFNPAFDESVPMLAVLF 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + + + H + AL+ ++ +P G L + V+ L +FM+ ++ ++P
Sbjct: 133 DMVVVAMFFCLGGHRFMIGALLSTFADVPPGVGLASPEVVHVLVSTLSISFMLGVQAAAP 192
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ + +GL+++ +PQ+ + + L +F+ LS+ + + F
Sbjct: 193 GTVALLIGVLVMGLISRTLPQLNLIAVGFSLNTMLLMIFVFLSVGSMGWLFQDQLE 248
>gi|297379398|gb|ADI34285.1| flagellar biosynthetic protein FliR [Helicobacter pylori v225d]
Length = 255
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFS---NAAYTTEGFII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + + ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQALLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGVILIASAIMGRFKEEISLAF 248
>gi|170769445|ref|ZP_02903898.1| flagellar biosynthetic protein FliR [Escherichia albertii TW07627]
gi|170121769|gb|EDS90700.1| flagellar biosynthetic protein FliR [Escherichia albertii TW07627]
Length = 243
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 3/231 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
RV + I P LS +P +V+L AM + + P + + Y L + +
Sbjct: 1 MRVLALISTAPILSERSVPKRVKLGLAMMITFAITPAIPAN---DVPIFSFYALWLAVQQ 57
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ +G G ++ ++ G +I +GL+ T + L L ++ ++ LL
Sbjct: 58 ILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMDMLALLLF 117
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
+ H + LV ++ T+PIG E N F + F+ L+ P + +
Sbjct: 118 LTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLAITKTGGLIFLNGFMLALPLITLLLTL 177
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 178 NLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 228
>gi|308061462|gb|ADO03350.1| flagellar biosynthesis protein FliR [Helicobacter pylori Cuz20]
Length = 255
Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ RV + P +P+ VR ++ S + P L + +
Sbjct: 16 FFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEFSNAAYTPEG---FII 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ ELFLG + +++ L F IS ++GL + ++ + + ++ ++
Sbjct: 73 ACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGSQKPIVGQVLLLL 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+L L + FHHQ+ + S +P+GQ + + + + F+I ++ P L
Sbjct: 133 AILILLDLSFHHQIILFVDHSLKAVPLGQFVFESALAKNIIKAFSHLFVIGFSMAFPILC 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 193 LVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 248
>gi|323178516|gb|EFZ64094.1| flagellar biosynthetic protein FliR [Escherichia coli 1180]
Length = 251
Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + ++VR+ ++A +I++ P + + +
Sbjct: 3 LALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLISLNS 62
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 63 --LILTMEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 120
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I + +L + +D H + L K + PIG L+ + L+
Sbjct: 121 INVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQ-TLRTIALAFSWVLASASLLAL 179
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 180 PTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 234
>gi|57505424|ref|ZP_00371352.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis
RM3195]
gi|57016249|gb|EAL53035.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis
RM3195]
Length = 255
Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 100/239 (41%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + L+ R+ I+ P S + IPM V+ ++ L P L+ ++
Sbjct: 12 VATFMLLFARLSGLIVFFPFFSHNSIPMVVKTTIVFFLTMFLYPLA----KLEALHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL+I+ + + G I+ +G + + + S + + ++
Sbjct: 68 FILQLLSEVLFGMIAGLIIQFIFVIIMMAGEQIAFTMGFTMASVLDPSSGINMPVTSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ LL D HH + L +S I +G N + + + F+I ++ P
Sbjct: 128 NLLALLFFLAFDGHHLMLLFLSQSLTYINLGGFYPSENFMQYLNSGMLSVFVIGFTMAFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ G+L K +PQ + I P I L + L + I++ F F
Sbjct: 188 ILAISLLADVIFGILMKTMPQFNLLVIGYPIKIALAFVVLIAILLIMMEYFKELIEEVF 246
>gi|291288732|ref|YP_003505548.1| flagellar biosynthetic protein FliR [Denitrovibrio acetiphilus DSM
12809]
gi|290885892|gb|ADD69592.1| flagellar biosynthetic protein FliR [Denitrovibrio acetiphilus DSM
12809]
Length = 257
Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+S + V R+G+ + +P + I Q+R A+ ++V+ P L
Sbjct: 10 TFVSFLMAVARIGAILFTVPVFGSNVIKPQIRFVLAILIAMVIFPSLEAMPYGNLPT--G 67
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+V E+ +G G+L +G Q G ++ +G ++ M + + ++S
Sbjct: 68 IIIVMVFKEILVGVCIGILSNFLFIGAQLGGQIVGLQMGFSVVNVMDPQSNTQLSIISSF 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I LL + H+ V A+ +S+ +IPIG F+ + F+I +++ +
Sbjct: 128 LNIGMLLFFIAVGGHYLVLGAIAESFRSIPIGGAEINPIAFNYIAKLFSYIFLIAIKIMA 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++F+ IG++ KL PQI + + P I +G + + L + F L F
Sbjct: 188 PAIITLLIFSTVIGVIGKLAPQINLMIVGFPAKIAIGLIIIALGMNYFFIAFEKILLRYF 247
>gi|317133471|ref|YP_004092785.1| flagellar biosynthetic protein FliR [Ethanoligenens harbinense
YUAN-3]
gi|315471450|gb|ADU28054.1| flagellar biosynthetic protein FliR [Ethanoligenens harbinense
YUAN-3]
Length = 256
Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 98/242 (40%), Gaps = 2/242 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
MTI+ + + L+ RV ++ P + +P +++ F++ + +++P L
Sbjct: 1 MTITTGLNIDLFLLVFLRVTGMMLFNPIFGRTSVPAILKVGFSLLTAFLIVPTLHGV--Q 58
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ ++E +G G+L+ + G I +GL++ S +
Sbjct: 59 VQMSGPVNFIVAGLLEFSIGFGIGVLVNQMFGIVAIAGEYIDMQLGLSMAQIYDPSMGAS 118
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ S ++ LL + + H +F L S+ + G VNM
Sbjct: 119 MPVVGSFYNLVLLLVFFAGNAHLSLFAMLADSFHVVAPGAAGITPGAAQFVVNMGGDMLE 178
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ LR++ P + ++ ++IGL+ + VP I I+ +G + L +++ + V +
Sbjct: 179 MGLRMAIPIIAVELICVVAIGLIMRAVPSINIFAFGIQIQAIVGIVVLLVAVPVTVSMCN 238
Query: 241 HS 242
Sbjct: 239 GL 240
>gi|313672723|ref|YP_004050834.1| flagellar biosynthetic protein flir [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939479|gb|ADR18671.1| flagellar biosynthetic protein FliR [Calditerrivibrio nitroreducens
DSM 19672]
Length = 259
Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 2/239 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ FL V R+ + P I +++L ++ I++ PF+ + N
Sbjct: 11 IVLFFLTVVRISGILFTAPVFGSEIISARIKLFLSILIGILIFPFITAI--DLSKANNLL 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+++ EL +G GL+ R +G+QF G VI T +G + + ++ + +
Sbjct: 69 MILIIIKELLIGIATGLIGRFLFVGVQFGGQVIGTQMGFGIVNVLDPQNNAQISLVAQFQ 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
II +L VI H + A+VKS+ IP+G + + V + F+ L++++P
Sbjct: 129 NIIMILFFLVIGGHLYIIQAIVKSFEMIPLGVFVFNKESYIFIVTIFSKIFLTALKITAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+V + +G++ +LVPQ+ I I P I G + + S+ F
Sbjct: 189 IFVTLLVTQVVLGIMGRLVPQLNILIIGFPIQIAGGLIVIITSLTFFYSMFESLMYEYL 247
>gi|89072286|ref|ZP_01158865.1| putative flagellar biosynthetic protein FliR [Photobacterium sp.
SKA34]
gi|89051818|gb|EAR57270.1| putative flagellar biosynthetic protein FliR [Photobacterium sp.
SKA34]
Length = 258
Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 100/236 (42%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + R+G+ ++ +P + IP+ VR A+A S + P + +
Sbjct: 10 ALLAQFWWPFFRIGAAMLAMPFFGDALIPIWVRALLALAISFIAAPLMPAMPTTD--LLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + G + GL+I + G +IS +GL + + ++ L
Sbjct: 68 LSALMLAFEQAIWGVLFGLIIHFLFSIMTLLGQIISLQMGLGMAIMNDPVNGVSVAILGR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + L +D H V LV+S+ + P+G L ++ + + F L ++
Sbjct: 128 MFLLFSTLLFLALDGHLLVIDILVQSFTSWPVGSGLALSSV-KQILTLFGWMFSSALAIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 187 LPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPTRYAEL 242
>gi|319403941|emb|CBI77529.1| Flagellar biosynthetic protein fliR [Bartonella rochalimae ATCC
BAA-1498]
Length = 261
Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 72/245 (29%), Positives = 129/245 (52%), Gaps = 1/245 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ S E ++ LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + ++ +
Sbjct: 11 SFSIEQLVTIALLIFARVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTESFKVL 70
Query: 62 NF-VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
N A + + E+ +G G++ Y LQF S+I +IG + Q I +S
Sbjct: 71 GDKPNLALLVRALFAEMLIGSTFGVIAHAYLWALQFMASIIGMSIGFSGQPGHSIIESTP 130
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E+ + +++ ++ + D H L+ SY +P+ N + + L F+
Sbjct: 131 ESHVANILVFAAVILFFASDLHIITIQGLLTSYDIVPLAFIPNPEAALTDYHEALSRAFL 190
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +++PF+ + I+ NI+IGLLNKL P IP+YFIS P+++ G L + + +++ F+
Sbjct: 191 TTLSIAAPFIIYAILINITIGLLNKLTPTIPVYFISLPFVMCGGLFLLYILMPELLHLFN 250
Query: 241 HSFLY 245
Sbjct: 251 SELRD 255
>gi|224438386|ref|ZP_03659313.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG
18818]
gi|313144828|ref|ZP_07807021.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG
18818]
gi|313129859|gb|EFR47476.1| flagellar biosynthesis protein FliR [Helicobacter cinaedi CCUG
18818]
Length = 258
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 3/246 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
I+ + L+V R P I + VR S+ P T+
Sbjct: 6 YITQSNSVAVFLLLVARFSGVFAFFPFFDNQLISINVRAAMVFFMSVAFYPLASYTLPDM 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+ V + + E+ LG + + +++ L F G +IS +GL + ++ +
Sbjct: 66 SMVE---FLFAALFEILLGFLASVCLQIVFAMLSFGGELISFTMGLTMASAYDPVSGTQK 122
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ LI I+GLL +DFHH +F + S P+G + F+ F +
Sbjct: 123 PIVAQLIAILGLLIALSLDFHHTIFLIISHSIQATPLGGFVFEPKSVEYFIKAFGNIFAV 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++ P L ++ +I G++ K PQ + I P I + + L L+I I++ F +
Sbjct: 183 GFSMAFPILAIILLSDIIFGMIMKTHPQFNLLAIGFPVKIAIAFVVLFLTISSIIFTFKN 242
Query: 242 SFLYGF 247
F
Sbjct: 243 ELAKAF 248
>gi|282891199|ref|ZP_06299702.1| putative type III secretion inner membrane protein SctT
[Parachlamydia acanthamoebae str. Hall's coccus]
gi|281498892|gb|EFB41208.1| putative type III secretion inner membrane protein SctT
[Parachlamydia acanthamoebae str. Hall's coccus]
Length = 285
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 101/240 (42%), Gaps = 7/240 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ L + R+ I P L +P V++ A++ ++ P + +
Sbjct: 24 EGVLTIFLLFLARMFPIIAQSPFLGARVLPHPVKVSLAISLFVIFFPQML-LLTTTPIGF 82
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ E+ +G + G +I + +Q G +I G + +P+
Sbjct: 83 NFNALLLLFKEILIGFILGFIISIPFSIVQNAGMIIDHQRGGASLMVNDPTIQNQSSPVG 142
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTF 179
+L+ ++ + WV+D A+ SY +P Q +N + + +L
Sbjct: 143 TLLNMVLIFLFWVVDIPFLFIDAIFTSYEIVPPDQFINPNFFDAASPFRKTQIELLNKVM 202
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++ ++L++P L ++ ++ +G++N+L PQ+ I F+ P LG +C ++ Q
Sbjct: 203 VVSIQLATPALLAILMTDVFLGIVNRLAPQVQITFLGMPLKSLLGLGVICFGWNLLTTQM 262
>gi|257095350|ref|YP_003168991.1| flagellar biosynthetic protein FliR [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047874|gb|ACV37062.1| flagellar biosynthetic protein FliR [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 261
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ F + RV + + P + +P +VRL +A +I + P L L
Sbjct: 11 AWVVAFFFPLARVLALLAAAPPFNNPALPARVRLALGLAITIGIAPVLPLMPALDPASGA 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
EL +G G +R+ + G+++S +GL ++ + ++
Sbjct: 71 GMLIL--AQELIIGTAMGFAMRLVFSAVDMAGNIVSLEMGLGFASAYDPQTAGQTAVVSE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+G++ LL I+ H V L S+ IPIG +SS N F L L
Sbjct: 129 FMGLLALLVFMAINGHLMVIATLTHSFSVIPIGGPRLGATTWSSLANSAAIVFSAGLFLV 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N+++ +L++ PQ+ + I P I LG L + + F G
Sbjct: 189 LPIIVALMISNLALAILSRAAPQLNLMAIGFPLTIALGFAALLFGLSYMGTPLQELFENG 248
Query: 247 F 247
Sbjct: 249 L 249
>gi|269139499|ref|YP_003296200.1| flagellar biosynthesis pathway, component FliR [Edwardsiella tarda
EIB202]
gi|267985160|gb|ACY84989.1| flagellar biosynthesis pathway, component FliR [Edwardsiella tarda
EIB202]
gi|304559388|gb|ADM42052.1| Flagellar biosynthesis protein FliR [Edwardsiella tarda FL6-60]
Length = 262
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + P L +P ++R+ A + +L P L T +
Sbjct: 12 WLGQFFWPFIRLLALYSTAPMLGEKAVPRKIRIALAALTAFLLAPQLPPT---DITLASG 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ +GC GL +++ ++ G VI +GL+ T S L L
Sbjct: 69 GALWLAIQQILIGCAIGLTMQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL ++ H L S+ T+P+ GN F + F+ + L+
Sbjct: 129 LNLLALLLFLSVNGHLWTISLLADSFRTLPLSTHPLNGNGFLALAQSGNLIFLNGMMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ + P + +G + L + + ++ H F
Sbjct: 189 PLIALLLTLNMALGLLNRMTPQLSIFVVGFPLTLTIGMMTLSMLMPMLAPFVEHLMQTLF 248
>gi|94264044|ref|ZP_01287844.1| Type III secretion system inner membrane R protein [delta
proteobacterium MLMS-1]
gi|94266370|ref|ZP_01290069.1| Type III secretion system inner membrane R protein [delta
proteobacterium MLMS-1]
gi|93453022|gb|EAT03510.1| Type III secretion system inner membrane R protein [delta
proteobacterium MLMS-1]
gi|93455555|gb|EAT05742.1| Type III secretion system inner membrane R protein [delta
proteobacterium MLMS-1]
Length = 263
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+M + +I+ RVG + L+P + +P QV++ + S+VL P +
Sbjct: 14 LMRVVMIMVRVGPLLFLMPVIGAPNVPTQVKILLVLMTSLVLAPMV-PVSAADLPDTALG 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ V++E+ + L +R ++ G V+ +G+ + M +P+ L
Sbjct: 73 FAHFVILEIVFVAILALFVRFVFAAVETAGQVVGVQMGMGMAGVMDPVFGNQISPVGMLW 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRLSS 187
I +L ID HH F A+V+ Y + GQ + + + F++ + + +
Sbjct: 133 NIAAILLFLAIDGHHLFFAAMVQGYQWVGPGQLAAVSQLTYEGMMEGASQMFVLAIMIMA 192
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P ++ +G++ K VPQIPI + P I +G +F L++ + F
Sbjct: 193 PVSVALFFSHVGMGVIAKTVPQIPILIVGMPMNIAIGIVFAGLAMGYLAPLLIARFEM 250
>gi|157147127|ref|YP_001454446.1| hypothetical protein CKO_02904 [Citrobacter koseri ATCC BAA-895]
gi|157084332|gb|ABV14010.1| hypothetical protein CKO_02904 [Citrobacter koseri ATCC BAA-895]
Length = 257
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 104/234 (44%), Gaps = 2/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+M+L L R+ + + P L ++++ A+A SI++ P L + + L ++
Sbjct: 12 LMALVLPFFRILAFLQFAPVLDNRAFSRRIKIAAALALSIIITPMLPNNVVLSELLS-MR 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L+ +L G + G+ +++ + LQ G ++S +GL + + + T ++ +I
Sbjct: 71 TVLLIGEQLLWGFLFGMALQLVFVTLQTAGHILSMNMGLGMAMMNDPVNGSSTTVISQII 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L +++D H + L K + PIGQ + + V L ++ P
Sbjct: 131 YVFCALLFFIMDGHLLLVTILFKGFSYWPIGQAI-NQPTLTLIVQGLGWIMASATLIALP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
F ++ GLLN++ P + ++ + P + G L + + + I + +
Sbjct: 190 TTFVMLIVQGGFGLLNRVSPTLNLFSLGFPISMLFGLLCISMMVTNIPDHYLNL 243
>gi|262276383|ref|ZP_06054192.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886]
gi|262220191|gb|EEY71507.1| flagellar biosynthesis protein FliR [Grimontia hollisae CIP 101886]
Length = 237
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/219 (16%), Positives = 89/219 (40%), Gaps = 2/219 (0%)
Query: 28 GLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLI 87
++P++VRL ++A + ++P L + V+ + L ++ +G G +
Sbjct: 3 FFGARFVPVRVRLYLSLAITFAVMPALPRVPETVELVSFGGFVILA-QQILIGIAMGTVT 61
Query: 88 RVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFY 147
+ G +I L + + ++ L + + D H Q+
Sbjct: 62 QFVIQTFVLLGQIIGMQSSLGFASMVDPANGQNTPLLGQFYLFVATMIFLSTDGHLQMLN 121
Query: 148 ALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLV 207
+V S+ T+P+G L + + + + F + L ++ + + N+S G++ +
Sbjct: 122 LVVMSFKTLPVGDMLGAAD-YRAMASWFGIMFSVALGMALAGIIALLTVNLSFGVMTRAA 180
Query: 208 PQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
PQ+ I+ + + + +G L + I+ + + + G
Sbjct: 181 PQLNIFSLGFSFALLVGLLICMYLLNGILPHYLNHWDTG 219
>gi|34498064|ref|NP_902279.1| type III secretion system EscT protein [Chromobacterium violaceum
ATCC 12472]
gi|34103919|gb|AAQ60279.1| type III secretion system EscT protein [Chromobacterium violaceum
ATCC 12472]
Length = 257
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 4/237 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L L + R +L+P S + + +R + ++ LLP
Sbjct: 6 QWLPVLGLCMLRPLGVFLLMPLFSTANLGGALIRNSLVLMIALPLLPVYPQW--QLPAAG 63
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
Y L E+ +G + G + L G +I T G ++ + + +
Sbjct: 64 AWGYVLLAAGEICIGLMIGFCAAIPFWVLDMAGFLIDTMRGSSMASVLNPLLGQQSSLFG 123
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN-FGNIFSSFVNMLQTTFMIMLR 184
L I + + +++ A+ +SY T+P G ++ S F Q + + LR
Sbjct: 124 LLFTQIFGVLFLISGGFNELLEAIYQSYVTLPPGAAIHYSPEALSFFYRQWQLMYELCLR 183
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
S P + ++ ++++GL+N+ Q+ ++F+S P L L +S+
Sbjct: 184 FSMPAIVVILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLMLIVSLSFAFNGLLD 240
>gi|315638913|ref|ZP_07894085.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis
JV21]
gi|315481131|gb|EFU71763.1| flagellar biosynthetic protein FliR [Campylobacter upsaliensis
JV21]
Length = 255
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 100/239 (41%), Gaps = 4/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + L+ R+ I+ P S + IPM V+ ++ L P ++ ++
Sbjct: 12 VATFMLLFARLSGLIVFFPFFSHNSIPMVVKTTIVFFLTMFLYPLA----KIEVLHLDSF 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E+ G + GL+I+ + + G I+ +G + + + S + + ++
Sbjct: 68 FILQLLSEVLFGMIAGLIIQFVFVIVMMAGEQIAFTMGFTMASVLDPSSGINMPVTSQIL 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ LL D HH + L +S I +G N + + + F+I ++ P
Sbjct: 128 NLLALLFFLTFDGHHLMLLFLSQSLTYINLGGFYPSENFMQYLNSGMLSVFVIGFTMAFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ G+L K +PQ + I P I L + L + I++ F F
Sbjct: 188 ILAISLLADVIFGILMKTMPQFNLLVIGYPIKIALAFVVLIAILLIMMEYFKELIAEVF 246
>gi|167626136|ref|YP_001676430.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis
HAW-EB4]
gi|167356158|gb|ABZ78771.1| flagellar biosynthetic protein FliR [Shewanella halifaxensis
HAW-EB4]
Length = 232
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 3/224 (1%)
Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83
M++P L +YIP VR+ A++ S ++ P L + +A L + +L +G +
Sbjct: 1 MVMPFLGNAYIPATVRILLAISISALIAPMLPPFPAVDAISFQA--LILAVEQLLIGFML 58
Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143
L + + + G+++S +GL++ S A L + G L +D H
Sbjct: 59 ALFLSIMIHVMTLFGAMMSMQMGLSMAVMNDPSSGGANPILGLWFMLYGTLLFLALDGHL 118
Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203
LV S+ PIG + + + F L+ P + +V N++ G+L
Sbjct: 119 VAIGILVDSFHLWPIGMGVFDLPLM-GLIARFSWIFAAAFMLALPAILAMLVVNLTFGVL 177
Query: 204 NKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ P + ++ + P + +G L + S + ++S L
Sbjct: 178 SRAAPSLNVFALGFPMSMLMGLLCVFFSFSGLPTRYSDLCLDAL 221
>gi|289523554|ref|ZP_06440408.1| flagellar biosynthetic protein FliR [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503246|gb|EFD24410.1| flagellar biosynthetic protein FliR [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 259
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 88/240 (36%), Gaps = 1/240 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L+ R + P + P+ V+ FA+ ++ L P L L
Sbjct: 9 QYFTLILLVSLRFLGMTIAAPSFAPPSYPVPVKFMFALVLALALSPLLEYPQGLFQGSFI 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + E +G G + Q G +G + + + L
Sbjct: 69 A-LILVGLREFCIGLGIGFFASLPLYAFQLAGGFSGINMGFGMVNILDPFSETQISLLGQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L ++ L + + H +F LV S+ +P G + S L F + +++S
Sbjct: 128 LKFMLALWFYFKWNGHILLFRCLVHSFKLLPFGIWGWSWSNGSITGEWLVELFYLAIKIS 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
PFL ++ +I +G + + VPQ+ ++ + I LG L L + ++V
Sbjct: 188 LPFLGAMLLADIGLGFVARTVPQMNVFVLGFSIKILLGMLVLMFMVPLLVDILKVEIEKA 247
>gi|237753461|ref|ZP_04583941.1| flagellar biosynthetic protein flir [Helicobacter winghamensis ATCC
BAA-430]
gi|229375728|gb|EEO25819.1| flagellar biosynthetic protein flir [Helicobacter winghamensis ATCC
BAA-430]
Length = 259
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 2/247 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ E + + L++ R I P I Q++ +I +P L +
Sbjct: 4 LAYLTEGNVANFLLLLLRFAGIIAFFPFFENQLITAQLKGTLIFLLTIFFIPLL--DVVP 61
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + E+ LG + + +++ + F G +IS A+GL + +
Sbjct: 62 PSEWTILRFIVAGLSEVMLGFLASMALQIVFGMISFGGELISFAMGLTIANAYDPVTGAQ 121
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + L+ ++ LL + +D+HH FY + +S IP+G + N + F+
Sbjct: 122 KPIVGQLLTLLALLIMLGLDYHHLFFYFVSESVKEIPLGGFMYSQNYIEYIIKSFSHIFV 181
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I L +S P + ++ +I G++ K PQ + I P I + L + + I+ F
Sbjct: 182 IGLTMSFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAIAFAVLIVIVPAIILHFK 241
Query: 241 HSFLYGF 247
FL F
Sbjct: 242 REFLSAF 248
>gi|317051543|ref|YP_004112659.1| type III secretion system inner membrane R protein
[Desulfurispirillum indicum S5]
gi|316946627|gb|ADU66103.1| type III secretion system inner membrane R protein
[Desulfurispirillum indicum S5]
Length = 264
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 3/239 (1%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
+ L R S ++ +P L + MQV++ ++ S +L P + + N
Sbjct: 15 TFILSFIRTLSIVVSMPVLGGEQVKMQVKIGLSLLVSALLFPMVSAHGAVIPP-NIFELM 73
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
++ E+F+G G ++ +QF G ++ +GL++ + ++ + + I
Sbjct: 74 IVIFKEIFIGLAIGFAGQIILGIIQFAGQIMGFQVGLSMSNVLDPMTNIQVPIIGQFLTI 133
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+L + + HH VF L +SY IP+G N G + + T F + +++ P
Sbjct: 134 FVVLLFLLANGHHYVFMGLYESYTLIPLGMLSFGNLGGFAQLVIELAATIFYVGFKITGP 193
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ G+L K+VPQI + + P I G L L L I + F +
Sbjct: 194 VFVVVLISQSINGILGKMVPQINLLTVGLPVQIFFGLLTLALVIPALRVVLEGIFSQFY 252
>gi|34556637|ref|NP_906452.1| flagellar biosynthesis protein FliR [Wolinella succinogenes DSM
1740]
gi|34482351|emb|CAE09352.1| FLAGELLAR BIOSYNTHETIC PROTEIN FLIR [Wolinella succinogenes]
Length = 255
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 101/247 (40%), Gaps = 3/247 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
++ E + + L++ R + P I ++ +I+ P +
Sbjct: 4 LSSLTEGNVTAFLLLLLRFSGVMFFFPFFENQLISTSIKGALIFFLTILFFPVVPLQSPP 63
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
V+ + + EL LG + +++++ + F G V S A+GL + ++
Sbjct: 64 TQIVD---FMLAGLSELMLGFLASVVLQIVFGMISFGGEVTSFAMGLTMASAYDPVTGAQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + LI ++ LL + +D HH F + +S IP+G + +I S + F+
Sbjct: 121 KPIIGQLITLLALLVMLALDLHHPFFLFIAESLRHIPLGGFVFSPDIASYTLKAFANLFL 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I ++ P + ++ +I G++ K PQ + I P I + L + + I+ F
Sbjct: 181 IGFTMAFPIVALILLSDIIFGMIGKAHPQFNLLVIGFPVKIAIAFAVLIVILPAILIHFK 240
Query: 241 HSFLYGF 247
F+
Sbjct: 241 REFILAL 247
>gi|289548903|ref|YP_003473891.1| flagellar biosynthetic protein FliR [Thermocrinis albus DSM 14484]
gi|289182520|gb|ADC89764.1| flagellar biosynthetic protein FliR [Thermocrinis albus DSM 14484]
Length = 253
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 5/233 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L RV + + L+P ++P ++ + A S+ + + D Q A
Sbjct: 12 LITFMLYHIRVTAFLFLVPFFGKEFLPQTFKVFLSTALSLSIFMY----TDPQPLSPEAP 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
V+ E LG V GL++R+ Q G +IS +IGL+ T + + + +
Sbjct: 68 LLTYVVKEFLLGFVAGLVLRLVFDAAQTAGEIISYSIGLSYATLFVPQLA-QMSLFSLFL 126
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + I VF ALVKS+ TIP+G + V + +F + R++ P
Sbjct: 127 SLLTTVTFLQIGGPEVVFLALVKSFQTIPVGSFPLWSLDPQQMVKLFHESFSLGFRVALP 186
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ ++ N+ + L+N+L+PQ+ ++ + P + +G + L L +I +
Sbjct: 187 LVISTLLVNLGLALINRLIPQVNVFMVGLPLQLMVGYIILFLVFPLITDLVAD 239
>gi|303247999|ref|ZP_07334265.1| flagellar biosynthetic protein FliR [Desulfovibrio fructosovorans
JJ]
gi|302490556|gb|EFL50461.1| flagellar biosynthetic protein FliR [Desulfovibrio fructosovorans
JJ]
Length = 259
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 104/235 (44%), Gaps = 1/235 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S L + R+ + LLP + +P V+ F + ++ + P L N
Sbjct: 9 ATVFSFVLTLMRISLVVFLLPFFGANLLPNMVKAAFCLMLTLAVFPMLSF-PGTMMPANV 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
S +++ E+ +G + +L+ +Q G+++ ++G +L SM +E+ L
Sbjct: 68 WSLSLMLLGEVVMGLLLNILVLFLFAAVQCAGAIMGFSMGFSLMNSMDPLTGASESGLGH 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ + + ++ H + L +S+ +P G L + + F++ L+++
Sbjct: 128 LMSQVTTMLFLSLNGHLVLLGGLAQSFKLVPPGGLLISPALGEHLIVFSGQMFVMALKIA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+P + + ++++ L+ + PQ+ + FI P IG+G LF+ L +
Sbjct: 188 APIMASIFLVDLALALVARAAPQMNVLFIGFPLKIGVGFLFMTLVFGALALYVGR 242
>gi|90422632|ref|YP_531002.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris
BisB18]
gi|90104646|gb|ABD86683.1| type III secretion system inner membrane R protein
[Rhodopseudomonas palustris BisB18]
Length = 248
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 3/244 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59
M I ++ +FLI CRVG+C+M+ PG S S IP+QVRL A++ +++L P L T+
Sbjct: 1 MIAPASISVLVVFLIFCRVGTCMMVAPGYSRSNIPVQVRLFLALSVTLMLSPLLEATVRP 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
L+ EL +G + GL RV+ L+ + +++AIGLNL ++ D
Sbjct: 61 ALEGAAAPAILGLIWSELVVGLMIGLTARVFFAALETLATFVASAIGLNLAGTVD--DGE 118
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
L LI + + ++ + H Q+ L+ SY + G+ + V+ L F
Sbjct: 119 HVPALVPLITVSATVLFFMTEQHWQLLRGLLGSYRIWLPATGVGIGDGVAQLVDHLSQAF 178
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ LR++SPF+ + ++ N++IGL NKL P IP+YFIS P+++ G L L L+ +V QF
Sbjct: 179 TLALRVASPFVIYSVIVNLAIGLANKLTPSIPVYFISLPFVLFGGLLLLYLTGREMVLQF 238
Query: 240 SHSF 243
S +F
Sbjct: 239 SIAF 242
>gi|269967108|ref|ZP_06181175.1| flagellar biosynthetic protein FliR [Vibrio alginolyticus 40B]
gi|269828245|gb|EEZ82512.1| flagellar biosynthetic protein FliR [Vibrio alginolyticus 40B]
Length = 254
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/227 (20%), Positives = 98/227 (43%), Gaps = 3/227 (1%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75
RVG+ + +P + IP+ VR A++ ++ P + ++ F + + L
Sbjct: 15 FFRVGAVFISMPFFGDAIIPVWVRTLLALSIVVITGPLMPPMPQVELFSMTSLF--LAFE 72
Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135
+ G + GL++ + G VIS +GL + + L+ L + I L
Sbjct: 73 QAIWGVMFGLILHMLFNVFTMLGQVISLQMGLGMAMMNDPINGLSVAILGRIFLIFSTLL 132
Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195
++ H V +++S+ P+G + VN+ F L L+ P + ++
Sbjct: 133 FLALEGHLLVIDIVIQSFVVWPVGSGI-TSLSLQGVVNIFGWMFASSLALALPAIVSMLL 191
Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 192 ANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYTAL 238
>gi|319405382|emb|CBI79001.1| Flagellar biosynthetic protein fliR [Bartonella sp. AR 15-3]
Length = 259
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 133/245 (54%), Gaps = 1/245 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DL 60
+ S E ++ L+ RVG+C+ML+PG+S IPM +RL ++FS+ +LP + D+ L
Sbjct: 11 SFSIEQLVTIALLVFSRVGACLMLMPGMSSVRIPMSLRLFIGISFSLAILPLVTDSFKTL 70
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + A + + E+ +G + G++ Y LQF S+I +IG + Q S I++S
Sbjct: 71 GDKPDLALLVRALFAEMLIGAILGIIAHAYLWALQFMASIIGMSIGFSGQPSHSITESTP 130
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E+ + +++ ++ + D H L+ SY IP+ N + + L F+
Sbjct: 131 ESHVANVLVFATIILFFASDLHIITIQRLLASYDIIPLAFIPNPEAALTDYHEALSRAFL 190
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +++PF+ + I+ NI+IGLLNKL P IP+YFIS P+++ G + + + +++ F+
Sbjct: 191 TTLSIAAPFIIYAILINITIGLLNKLTPTIPVYFISLPFVMCGGLFLIYILMPELLHLFN 250
Query: 241 HSFLY 245
Sbjct: 251 SELHD 255
>gi|328543169|ref|YP_004303278.1| flagellar biosynthetic protein fliR [polymorphum gilvum
SL003B-26A1]
gi|326412915|gb|ADZ69978.1| Flagellar biosynthetic protein fliR [Polymorphum gilvum
SL003B-26A1]
Length = 257
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 1/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
I LI R+G+ +MLLP L S IPM++RL A+A ++V P +
Sbjct: 10 EIAAVFMLIFARLGTMLMLLPALGESSIPMRLRLTVALALTLVFYPIGARAYPAGLVSDP 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGIS-DSLAETPLN 125
L+ EL +G GL R+ T LQ G +I+ L ++ +
Sbjct: 70 GGLGILLAGELAIGFGIGLCARMITSVLQIAGMIIANQSSLASALGTDVTMSGQQGALVG 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ + I+G+ ++V D H + AL S+ P G+ L + + ++ F I +R+
Sbjct: 130 NFLAILGVTLVFVTDTHFLIIAALHDSFTLFPPGEWLPVADFATLATQIVAGMFSIAVRM 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+PFL +VF +GLLNKL+PQ+ I+FI+ P I LG L + + ++ + F
Sbjct: 190 SAPFLVVGLVFYFGLGLLNKLMPQMQIFFIAMPVNIALGLGLLLVLLATLMTWYLGHFEE 249
Query: 246 G 246
Sbjct: 250 A 250
>gi|209695728|ref|YP_002263658.1| flagellar biosynthesis protein FliR [Aliivibrio salmonicida
LFI1238]
gi|208009681|emb|CAQ79980.1| polar flagellar assembly protein FliR [Aliivibrio salmonicida
LFI1238]
Length = 260
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/236 (14%), Positives = 89/236 (37%), Gaps = 1/236 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + F R+ S +M++ ++ ++RL ++ + ++P + ++
Sbjct: 11 FIATYFWPYTRISSMLMVMSVFGARFVSPKIRLYLGLSITFAVMPAIPAMPPEIQLLSFQ 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ +G G++ T G ++ L + + ++ L L
Sbjct: 71 GFMTTA-EQIIIGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +L D H ++ V S+ T+P+G F S L L +S
Sbjct: 130 FMFLSILFFLGTDGHLKMINFAVMSFTTLPVGVGKLTSVDFQSLAGWLGIMMKAGLSMSL 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + N+S G++ + PQ+ I+ + + + +G L + + + +
Sbjct: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIVLGLFTHYDLHW 245
>gi|167568048|ref|ZP_02360964.1| type III secretion system EscT protein [Burkholderia oklahomensis
EO147]
Length = 260
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 3/227 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + + + R +M++P + + VR + ++ +LP
Sbjct: 6 HWLPIVAIAMLRPFGALMIVPVFTPGTLGGSLVRNALVLMIALPVLPVHDAWPAFSPEAG 65
Query: 66 RAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
A Y +L EL +G + G + L G +I TA G ++ + + +P
Sbjct: 66 GAPHYLRLAFGELCVGALIGFCAAIPFWALDMAGFLIDTARGASMASVLNPLLGAQSSPF 125
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIML 183
+ + L V + + + SY T+P G L FG + + Q + + L
Sbjct: 126 GMVFSQVFTLLFLVSGGFNTLIETIYASYVTLPPGAPLRFGPDALALLTQQWQLMYELCL 185
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230
R + P L ++ ++++GL+N+ Q+ ++F+S P L L +
Sbjct: 186 RFAMPALAAILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLLLVM 232
>gi|119714988|ref|YP_921953.1| flagellar biosynthetic protein FliR [Nocardioides sp. JS614]
gi|119535649|gb|ABL80266.1| flagellar biosynthetic protein FliR [Nocardioides sp. JS614]
Length = 253
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/236 (14%), Positives = 90/236 (38%), Gaps = 5/236 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L R+ S + ++P S +PM ++ + + +P ++
Sbjct: 10 LVAYLLASVRIVSWLAVVPPFSGRAVPMMAKVVLGLGLAFAAVPD-----GGSIPLSTVG 64
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
V ++ +G G + ++ + GS+I G +L + A T
Sbjct: 65 LLLNVGTQVLIGLAMGFVTQLLFGAIAAAGSLIDVFGGFSLASGFDPLSMNANTVFGKFH 124
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + L+ H V L++++ +P+G + + F ++++ P
Sbjct: 125 QMLATVLLFASGGHLLVIGGLLRTFHFLPLGTSPEWQTAPDVLLTAFGMFFTTAVQIALP 184
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ + ++ + LL K+ PQ+ + + P +G+ L + L ++
Sbjct: 185 MIAVLFLSDLGLALLTKVAPQLNAFNVMFPVKVGMTLLLVGLWFPVLPQAVDRLVD 240
>gi|256112184|ref|ZP_05453105.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 3 str.
Ether]
gi|265993611|ref|ZP_06106168.1| flagellar biosynthetic protein FliR [Brucella melitensis bv. 3 str.
Ether]
gi|262764481|gb|EEZ10513.1| flagellar biosynthetic protein FliR [Brucella melitensis bv. 3 str.
Ether]
Length = 255
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 74/237 (31%), Positives = 133/237 (56%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +L + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLLLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFPATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ +H
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFVTHE 246
>gi|256376455|ref|YP_003100115.1| type III secretion system inner membrane R protein [Actinosynnema
mirum DSM 43827]
gi|255920758|gb|ACU36269.1| type III secretion system inner membrane R protein [Actinosynnema
mirum DSM 43827]
Length = 256
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++L L R + +M+ P + IPM V+ A+ ++ ++P L ++
Sbjct: 9 VLVALLLAATRSAAWLMVCPPFNGKAIPMTVKGMLAVGLALPVVPRLSA--GSVPSLDTW 66
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD-SLAETPLNS 126
++ +G G L V G+Q G ++ G +L + S L
Sbjct: 67 SLVIAAGEQVVVGAGLGFLTAVIFAGVQAAGDLLDVFGGFSLAFAFDPMSFSGNNAVLGR 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
G++ L+V H + SY IP+ L+ G + + L + +++
Sbjct: 127 FYGLLATTLLFVTGSHQVIIRGFTLSYDAIPLDGGLSLGRLGTLLTTGLGQLLLSAAQIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + ++ +GLLN++ P + + I P IGL + + L++ ++ +
Sbjct: 187 GPLIVVLFCADVGLGLLNRIAPALNPFQIGFPAKIGLTLVLVGLTMPMLPMSVENI 242
>gi|17988512|ref|NP_541145.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str.
16M]
gi|225686878|ref|YP_002734850.1| flagellar biosynthesis protein FliR [Brucella melitensis ATCC
23457]
gi|256261987|ref|ZP_05464519.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 2 str.
63/9]
gi|17984304|gb|AAL53409.1| flagellar biosynthetic protein flir [Brucella melitensis bv. 1 str.
16M]
gi|225642983|gb|ACO02896.1| flagellar biosynthetic protein FliR [Brucella melitensis ATCC
23457]
gi|263091471|gb|EEZ16007.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 2 str.
63/9]
gi|326411294|gb|ADZ68358.1| flagellar biosynthesis protein FliR [Brucella melitensis M28]
gi|326554583|gb|ADZ89222.1| flagellar biosynthesis protein FliR [Brucella melitensis M5-90]
Length = 255
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 75/237 (31%), Positives = 135/237 (56%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +L + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLLLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246
>gi|89068707|ref|ZP_01156093.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
gi|89045670|gb|EAR51732.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
Length = 251
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 107/237 (45%), Gaps = 3/237 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L R+G+ + +PG +P + RL A+A ++ L P I+
Sbjct: 9 GQLGGYILAFARIGAIFVFMPGFGERPVPARFRLFMALAVALALYPATG--IEPVTLDAP 66
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ +E+ +G GL R+ LQF G I GL+ + T +
Sbjct: 67 VAFLGLLALEVTIGLWIGLTARIVMSALQFAGYQIGYVAGLSNALAPTTGQFEGATMVAG 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + ++ D HH + AL+ SY P+G+ + G++ + V + +F + L LS
Sbjct: 127 ALMMAATALIFATDLHHLIIRALLTSYEVFPVGR-IMPGDLAAQTVAAVGASFYVGLALS 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
PF IV N+ +GL N+++P +P++F++ P LI G + L + ++
Sbjct: 186 VPFYVMGIVLNVGLGLANRMMPTLPVFFVAGPVLIASGLIVLLAAAPTMLDHHLQEL 242
>gi|62317950|ref|YP_223803.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 1 str.
9-941]
gi|83269927|ref|YP_419218.1| flagellar biosynthesis protein FliR [Brucella melitensis biovar
Abortus 2308]
gi|189023201|ref|YP_001932942.1| flagellar biosynthesis protein FliR [Brucella abortus S19]
gi|237817495|ref|ZP_04596486.1| flagellar biosynthetic protein FliR [Brucella abortus str. 2308 A]
gi|254691620|ref|ZP_05154874.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 6 str.
870]
gi|254695084|ref|ZP_05156912.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 3 str.
Tulya]
gi|254698181|ref|ZP_05160009.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 2 str.
86/8/59]
gi|254731626|ref|ZP_05190204.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 4 str.
292]
gi|256256807|ref|ZP_05462343.1| flagellar biosynthesis protein FliR [Brucella abortus bv. 9 str.
C68]
gi|260544134|ref|ZP_05819955.1| flagellar biosynthesis protein FliR [Brucella abortus NCTC 8038]
gi|260757250|ref|ZP_05869598.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 6 str.
870]
gi|260759385|ref|ZP_05871733.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 4 str.
292]
gi|260762628|ref|ZP_05874960.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 2 str.
86/8/59]
gi|260883054|ref|ZP_05894668.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 9 str.
C68]
gi|261215436|ref|ZP_05929717.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 3 str.
Tulya]
gi|297250158|ref|ZP_06933859.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 5 str.
B3196]
gi|62198143|gb|AAX76442.1| hypothetical FliR, flagellar biosynthesis protein [Brucella abortus
bv. 1 str. 9-941]
gi|82940201|emb|CAJ13254.1| Bacterial export protein, family 1:Flagellar biosynthesis protein
FliR [Brucella melitensis biovar Abortus 2308]
gi|189021775|gb|ACD74496.1| Flagellar biosynthesis protein FliR [Brucella abortus S19]
gi|237787330|gb|EEP61547.1| flagellar biosynthetic protein FliR [Brucella abortus str. 2308 A]
gi|260097405|gb|EEW81279.1| flagellar biosynthesis protein FliR [Brucella abortus NCTC 8038]
gi|260669703|gb|EEX56643.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 4 str.
292]
gi|260673049|gb|EEX59870.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 2 str.
86/8/59]
gi|260677358|gb|EEX64179.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 6 str.
870]
gi|260872582|gb|EEX79651.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 9 str.
C68]
gi|260917043|gb|EEX83904.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 3 str.
Tulya]
gi|297174027|gb|EFH33391.1| flagellar biosynthetic protein FliR [Brucella abortus bv. 5 str.
B3196]
Length = 255
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 75/237 (31%), Positives = 135/237 (56%), Gaps = 1/237 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QV L A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVCLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + + ++ F+H
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFILPELLRFFTHE 246
>gi|238920323|ref|YP_002933838.1| flagellar biosynthesis protein FliR [Edwardsiella ictaluri 93-146]
gi|238869892|gb|ACR69603.1| flagellar biosynthetic protein FliR, putative [Edwardsiella
ictaluri 93-146]
Length = 261
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F R+ + P L IP +VR+ A + +L P L T +
Sbjct: 12 WLGQFFWPFIRLLALYSTAPMLGEKVIPRKVRIALAALTAFLLAPQLPPT---DITLASD 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ +GC GL +++ ++ G VI +GL+ T S L L
Sbjct: 69 GALWLAIQQILIGCAIGLTMQLAFAAVRLAGEVIGMQMGLSFATFFDPSGGPNMPVLARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ LL + H L S+ T+P+ GN F + + F+ + L+
Sbjct: 129 LNLLALLLFLCANGHLWTISLLADSFHTLPLSTHPLNGNGFLALAQSGKLIFLSGMMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + NI++GLLN++ PQ+ I+ I P + +G + L + + ++ H F
Sbjct: 189 PLITLLLTLNIALGLLNRMTPQLSIFVIGFPLTLTIGMMTLSMLMPMLAPFVDHLMQTLF 248
>gi|326389465|ref|ZP_08211032.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus
JW 200]
gi|325994470|gb|EGD52895.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus
JW 200]
Length = 260
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 102/236 (43%), Gaps = 3/236 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ +L P +P ++ ++++ + N
Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPV--DLQINNVLD 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +V+ E +G V GL + + G +I +G L + I + + I
Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ +L +++ H+ +F L KS IP+G+ N ++ M+ F++ R+S+
Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIPVGKVVFNLPDMSQVLTKMVSDMFILGFRISA 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F
Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMF 244
>gi|57168057|ref|ZP_00367196.1| flagellar biosynthetic protein FliR [Campylobacter coli RM2228]
gi|57020431|gb|EAL57100.1| flagellar biosynthetic protein FliR [Campylobacter coli RM2228]
Length = 234
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 4/229 (1%)
Query: 19 VGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+ I+ P S + IPM ++ FA+ ++ L P L+ +++ ++ E+
Sbjct: 1 MSGLIVFFPFFSHNSIPMIIKTTFALFLTMYLFPLA----KLEILHLDSFFIIQLLSEIV 56
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
G + GL++++ + G I+ +G + + + S + ++ +I LL
Sbjct: 57 FGMIAGLMLQIVFAIVMMAGEQIAFTMGFTMASVLDPSSGTNMPITSQILHLIALLFFLA 116
Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198
D HH + L S G I +G N+ + F+I +S P L ++ +
Sbjct: 117 FDGHHLMLLFLSHSLGYINLGGFYPHENLMHYLNMGMLNIFIIGFTMSFPILGISLLADT 176
Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
GLL K +PQ + I P I LG + L + +++ F L F
Sbjct: 177 IFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKDLILEVF 225
>gi|312115272|ref|YP_004012868.1| type III secretion system inner membrane R protein [Rhodomicrobium
vannielii ATCC 17100]
gi|311220401|gb|ADP71769.1| type III secretion system inner membrane R protein [Rhodomicrobium
vannielii ATCC 17100]
Length = 255
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-QNFVNRA 67
++S+FL++CR+G C+M+LP + + +P++VRL +A S+ + L + ++ +
Sbjct: 13 VLSIFLVLCRIGGCLMVLPAIGGARVPVRVRLMVCLAISVAVAFALGNFESARESLSSTP 72
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
LV+VE G V G++IR++ +F S A+GL + + D PL
Sbjct: 73 SLVSLVLVETAKGLVIGIMIRLFFASFKFLAVAGSAALGLAMPVNAVEEDGETTPPLAEF 132
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D H +V AL++SY +PIG + S V+ L+ ++ L++ +
Sbjct: 133 VSLTAAFLFLATDQHLEVLKALLQSYTVLPIGTGIGLAPSLSGVVDTLRDACLVSLQVVA 192
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P L F + N+ G+LN++ PQ P YF+S P++IG G L + + F +F
Sbjct: 193 PLLVFAFLVNLLFGVLNRIAPQTPAYFLSMPFVIGGGMLIFYFTAGEMFLLFMGAF 248
>gi|160939624|ref|ZP_02086972.1| hypothetical protein CLOBOL_04516 [Clostridium bolteae ATCC
BAA-613]
gi|158437415|gb|EDP15179.1| hypothetical protein CLOBOL_04516 [Clostridium bolteae ATCC
BAA-613]
Length = 259
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 101/247 (40%), Gaps = 1/247 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M S L++ R+G + + P S +P VR +A S+++ P +
Sbjct: 1 MDSSVFEYFDIFLLVLARMGGLVFINPVFSRRGVPPMVRTGLVLALSLLIAPGVRSGAGQ 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + ++ E+ LG V G + ++ L G + T GL + M + +
Sbjct: 61 VMAFSTFDMVESLIREVILGLVIGCVFHIFFYMLYVAGDFLDTVFGLAMGKVMDPAGGVQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTF 179
+ L + + L + H + SY +P+G + G I + + + F
Sbjct: 121 TSILGQFVNVFFYLYFFATGCHLTMVRLFAYSYQVVPVGAGAILGGRILWYIITLFGSVF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+++++L PF+ + +++G+L KL+PQI ++ I+ I LG + + L +
Sbjct: 181 LMVIKLVLPFVAAEFILEMTMGVLMKLIPQIHVFVINIQCKILLGIMLMMLFAYPMGAFM 240
Query: 240 SHSFLYG 246
Sbjct: 241 DRYTEAM 247
>gi|114765218|ref|ZP_01444350.1| flagellar biosynthesis protein [Pelagibaca bermudensis HTCC2601]
gi|114542353|gb|EAU45381.1| flagellar biosynthesis protein [Roseovarius sp. HTCC2601]
Length = 251
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 59/235 (25%), Positives = 115/235 (48%), Gaps = 3/235 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ + L+ R+G +M +P L + IP++ RL F + S+ L P + +
Sbjct: 11 FLGVALVFARIGGMLMFVPALGETVIPVRHRLAFGVLLSLALYPAVPQGP--VSLDAPGP 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ +EL LG G+ R+ L+F G I GL+ S + T +++ +
Sbjct: 69 LVGALAIELTLGLWIGVTARILLSALEFAGYQIGLVSGLSNAFSPSLGSFQGSTLISTGL 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ G+ ++ D HH + A+V SY P GQ L ++ V + +F + L + +P
Sbjct: 129 MLGGVAMIFATDLHHLIIGAMVSSYDLFPPGQILPS-DLAQQIVKAVSQSFYLGLSIVAP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
F ++ N+ +GL +++P +P++F++ P LI G L L ++ +++ +F+ F
Sbjct: 188 FYVMGLLVNLGMGLAARMMPSLPVFFVAAPVLIMAGLLVLVMATPVMLREFAERF 242
>gi|310820309|ref|YP_003952667.1| type III secretion system inner membrane r protein [Stigmatella
aurantiaca DW4/3-1]
gi|309393381|gb|ADO70840.1| Type III secretion system inner membrane R protein [Stigmatella
aurantiaca DW4/3-1]
Length = 273
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 112/244 (45%), Gaps = 5/244 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ ++ L++CR+ ++ P L +P +VR+ + S+VL P + D + +
Sbjct: 20 MIFTIGLLMCRIMPVLIFSPFLGGEVVPPEVRMGVGVTLSLVLFPSVADRMGA-LPTSAL 78
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y L++ E+F+G ++ + + G+++ T G N + +SL
Sbjct: 79 PYIALLLKEVFIGVSLAFIVNIIFDAARVAGTLVDTMAGSNNAQLYVPQLGQQVSLFSSL 138
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF----MIML 183
+ ++ +D HH V AL S+ +P+ F +F ++ F I L
Sbjct: 139 KVQLSVVLFLTLDGHHIVISALADSFAIVPLDSFPKFSKGTWAFFEVISRAFANLLAISL 198
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P + + ++++G +N++ P + ++FI+ + L L++ +++ +F F
Sbjct: 199 SLAAPQMLSAFLTDLAMGAVNRVAPNLQVFFIAMAIKPMVSVLIAALALHMLIGRFQSEF 258
Query: 244 LYGF 247
++
Sbjct: 259 VHML 262
>gi|315498432|ref|YP_004087236.1| flagellar biosynthetic protein flir [Asticcacaulis excentricus CB
48]
gi|315416444|gb|ADU13085.1| flagellar biosynthetic protein FliR [Asticcacaulis excentricus CB
48]
Length = 268
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 118/245 (48%), Gaps = 1/245 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
++ + +I RVGS +L+PGL +P ++RL FA F+++L+P + +
Sbjct: 18 FGTSQVVFTAMMIFVRVGSVAILIPGLGDQAVPPRMRLSFAFVFTLMLVPVVQSQMPALP 77
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
A + L++ E +G + G+L+R + L G V+S L+ + + + T
Sbjct: 78 PKLGA-MAGLIIHEAVIGLMLGMLMRTFLGALAIAGEVVSLQTTLSFAQTANPAQAQPST 136
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
+ + + ++GL+ ++ + HH + SY P + + G+ + + TFM+
Sbjct: 137 SIGTFLAMLGLVLIYATNLHHLFIAGMRDSYWVFPPMRPVMVGDATQLMIRTVGDTFMLA 196
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+++++P L F ++ N++ G + +++P PI+F TP + LG LS+ F
Sbjct: 197 IQMTTPILVFGLIINVAAGFIGRIMPAFPIFFAVTPVSVLLGLAIFALSLGGTGLVFLQH 256
Query: 243 FLYGF 247
+
Sbjct: 257 YEEFL 261
>gi|76818606|ref|YP_335846.1| SctT [Burkholderia pseudomallei 1710b]
gi|76583079|gb|ABA52553.1| SctT [Burkholderia pseudomallei 1710b]
Length = 531
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 219 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 275
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 276 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 335
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 336 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 395
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 396 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 451
>gi|167037651|ref|YP_001665229.1| flagellar biosynthesis protein FliR [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116066|ref|YP_004186225.1| flagellar biosynthetic protein FliR [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856485|gb|ABY94893.1| flagellar biosynthetic protein FliR [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929157|gb|ADV79842.1| flagellar biosynthetic protein FliR [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 260
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 101/236 (42%), Gaps = 3/236 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ +L P +P ++ ++++ + N
Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPV--DLQINNVLD 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +V+ E +G V GL + + G +I +G L + I + + I
Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ +L +++ H+ +F L KS IPIG+ + + M+ F++ R+S+
Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGMSQVLTKMVSDMFILGFRISA 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F
Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMF 244
>gi|297530589|ref|YP_003671864.1| flagellar biosynthetic protein FliR [Geobacillus sp. C56-T3]
gi|297253841|gb|ADI27287.1| flagellar biosynthetic protein FliR [Geobacillus sp. C56-T3]
Length = 257
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 6/243 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L+ R S +P S +P + A FS +L + +
Sbjct: 6 TYFPAFLLVFVRAASFFAAMPLFSYRTVPASYKAGLAFLFSWLLFLAMPKPV----LALD 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y LV+ E +G GLL + +Q G +I IG + + L
Sbjct: 62 GVYVLLVVKEALVGLALGLLAAILMAAVQVAGGLIDFQIGFAIANVIDPQTGAQSPLLGE 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLR 184
+ ++ LL ++D HH + + SY +P+ + + + V F +
Sbjct: 122 YLHLLALLLWLMLDGHHLLLDGMFYSYHWLPLDRLPHVADGRAVEYAVRAFAAMFAAAFQ 181
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + + ++++G++ + VPQ+ I+ + L L ++ I+ F
Sbjct: 182 MAAPLVGSLFLVDVALGIIARAVPQMNIFAVGFSAKTAAAFLLLLAAVGGILLAARGVFH 241
Query: 245 YGF 247
+ F
Sbjct: 242 FMF 244
>gi|323493114|ref|ZP_08098245.1| putative flagellar biosynthetic protein FliR [Vibrio brasiliensis
LMG 20546]
gi|323312585|gb|EGA65718.1| putative flagellar biosynthetic protein FliR [Vibrio brasiliensis
LMG 20546]
Length = 258
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L+ RVG+ + +P S IP+ VR A++ +V P + + F +
Sbjct: 11 LLGQLWWPFFRVGAVFISMPFFGDSLIPVWVRSLLALSIVVVAAPLMPAMPAVDLFSLTS 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + G GL++ + G +IS +GL + + ++ L +
Sbjct: 71 LF--LAFEQAIWGLFFGLILHMLFAIFTTLGQIISMQMGLGMAMMNDPVNGMSVAILGRI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I L ++ H + L++S+ P+G L+F + F VN+ F L L+
Sbjct: 129 FLIFSTLLFLSLEGHLVILDILIQSFRVWPVGSGLSFAS-FQGVVNLFSWMFASALALAL 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ NIS G++N+ P + +Y + P + LG + +SI + ++
Sbjct: 188 PAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISISGVPSRYLILVSDTL 247
>gi|196247621|ref|ZP_03146323.1| flagellar biosynthetic protein FliR [Geobacillus sp. G11MC16]
gi|196212405|gb|EDY07162.1| flagellar biosynthetic protein FliR [Geobacillus sp. G11MC16]
Length = 257
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 6/243 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ LI R+ S +P S +P ++ A FS +L +
Sbjct: 6 THFPAFLLIFARIASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAVPK----PTLSLN 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y LV E+ +G GLL +Q G +I IG + + L
Sbjct: 62 DVYMLLVFKEVLVGLALGLLAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGQ 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLR 184
+ + LL L +D HH + + SY +P+ + + V F++ ++
Sbjct: 122 YLHSLALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIADGRAVDYAVRAFAAMFVVAVQ 181
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + + ++++G++ + VPQ+ I+ + L L +I I++ F
Sbjct: 182 MAAPLVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELFQ 241
Query: 245 YGF 247
F
Sbjct: 242 LMF 244
>gi|167770200|ref|ZP_02442253.1| hypothetical protein ANACOL_01543 [Anaerotruncus colihominis DSM
17241]
gi|167667522|gb|EDS11652.1| hypothetical protein ANACOL_01543 [Anaerotruncus colihominis DSM
17241]
Length = 254
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 99/247 (40%), Gaps = 5/247 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M S + + L+ R+ + I P LS +P VR + ++ P L
Sbjct: 1 MLDSVMAGLPAYMLVFVRMAAMIGTNPLLSRRNVPAAVRAGLTALLTFLIAPGL-----T 55
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+++ ++ E +G G + +++ L F G V+ GL++ ++
Sbjct: 56 VAPMDQMTLVLAMLKEFLVGFACGYVFQIFYYMLFFAGDVMDMQFGLSMAKVFDPGTNMQ 115
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + + I+ L ++ + H + S+ +P G ++ ++ F
Sbjct: 116 VSVSGNFLNILFSLFIFATNSHLLLVRIFATSFQIVPAGFTPFSPHVSGYIADLFIEAFS 175
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ LRL+ PF+ V +S+G+L KL+PQI ++ I+ + L + L +
Sbjct: 176 LALRLALPFIAVEFVLEVSLGILMKLIPQIHVFVINFQLKVFLSLVMLLTFAAPLSSFLD 235
Query: 241 HSFLYGF 247
+ Y
Sbjct: 236 NYMNYML 242
>gi|307264885|ref|ZP_07546447.1| flagellar biosynthetic protein FliR [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306920143|gb|EFN50355.1| flagellar biosynthetic protein FliR [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 260
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 101/239 (42%), Gaps = 3/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ +L P +P ++ ++++ + N
Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTTFKIGLGFFAAVIVFDTMGPV--NLQINNVLD 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +V+ E +G V GL + + G +I +G L + I + + I
Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ +L +++ H+ +F L KS IPIG+ + I M+ F++ R+S+
Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIPIGKVAFDLSGISQVLAKMVSDMFILGFRISA 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F
Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPMYLTIIDFMFSGM 247
>gi|319409206|emb|CBI82850.1| Flagellar biosynthetic protein fliR [Bartonella schoenbuchensis R1]
Length = 261
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 74/245 (30%), Positives = 131/245 (53%), Gaps = 1/245 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DL 60
++ + +++ L+ RVG+C+ML+PG+S IPM RL A+AFS V+LP + D +L
Sbjct: 11 SLPIDQLVIIAMLVFARVGACLMLMPGISSLRIPMNFRLFLAIAFSFVMLPLVVDFFKEL 70
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + A ++ + E+ +G G++ VY LQF ++I+ ++G + Q + DS+
Sbjct: 71 GDKPDIAVLTRALFSEMLIGASLGVIAHVYLWALQFMATIIAMSMGYSGQPGHSVIDSMP 130
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET + L + ++ + D H L+ SY + N + ++L F+
Sbjct: 131 ETQIAHLFVLAAVMLFFASDLHMVTIRGLLASYDVVSPSFVPNPEAALIDYRDVLSRAFL 190
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +++PF+ + I+ NI IGL+NKL P IP+YFIS P+++ G L I +++ FS
Sbjct: 191 TTLSIAAPFITYAILINIGIGLVNKLTPTIPVYFISLPFVVAGGVFLLYFLIPELLHFFS 250
Query: 241 HSFLY 245
Sbjct: 251 LELQD 255
>gi|138894757|ref|YP_001125210.1| flagellar biosynthesis protein FliR [Geobacillus
thermodenitrificans NG80-2]
gi|134266270|gb|ABO66465.1| Flagellar biosynthetic protein [Geobacillus thermodenitrificans
NG80-2]
Length = 257
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 6/243 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ LI R S +P S +P ++ A FS +L +
Sbjct: 6 THFPAFLLIFARTASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAVPK----PTLSLN 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y LV E+ +G GLL +Q G +I IG + + L
Sbjct: 62 DVYMLLVFKEVLVGLALGLLAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGQ 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLR 184
+ + LL L +D HH + + SY +P+ + + V F++ ++
Sbjct: 122 YLHSLALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIADGRAVDYAVRAFAAMFVVAVQ 181
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++PF+ + ++++G++ + VPQ+ I+ + L L +I I++ F
Sbjct: 182 MAAPFVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELFQ 241
Query: 245 YGF 247
F
Sbjct: 242 LMF 244
>gi|326315339|ref|YP_004233011.1| type III secretion protein SpaR/YscT/HrcT [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372175|gb|ADX44444.1| type III secretion protein SpaR/YscT/HrcT [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 302
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 89/239 (37%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L L R + +++LP + + +VR + + L +
Sbjct: 20 GMLGLLALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVA--WGQPSGLLESTSP 77
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV+ E +G + G + V + G +I G N TP+ +
Sbjct: 78 LVFIALVVKEALIGMLIGFAVSVVFWAAEGIGMLIDNQAGYNNIQQTNPLSGQQSTPVGN 137
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLR 184
L+ + ++ +++ L SY P+ + + + F + + +L+
Sbjct: 138 LLMQLAIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLK 197
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ P L ++ ++ +GLL+K ++ ++ P L L L + + +Q
Sbjct: 198 IAGPVLMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 256
>gi|260767958|ref|ZP_05876892.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972]
gi|260615988|gb|EEX41173.1| flagellar biosynthesis protein FliR [Vibrio furnissii CIP 102972]
Length = 258
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 98/242 (40%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L+ R+G+ + +P IP+ VR A++ +++ P + +
Sbjct: 9 SSWLGQLWWPFFRIGAVFVSMPFFGDLLIPVWVRSLLALSITVITAPLMPAMPAVDLMSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G ++S +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAVWGLMFGLILHMLFTVFTLLGQIVSLQMGLGMAMMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ + L ++ H V L++S+ P+G + V++ F L L
Sbjct: 127 RIFLVFTTLLFLALEGHLVVIDVLIQSFTVWPVGSGI-TMLSLQGIVHIFSWMFSAALAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + ++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYGSLVHD 245
Query: 246 GF 247
Sbjct: 246 TL 247
>gi|85060036|ref|YP_455738.1| flagellar biosynthesis protein FliR [Sodalis glossinidius str.
'morsitans']
gi|84780556|dbj|BAE75333.1| flagellar biosynthetic protein FliR [Sodalis glossinidius str.
'morsitans']
Length = 262
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 3/222 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ LF + R+ + I P S I ++L + ++++ P L + + +
Sbjct: 11 ALLPQLFWPLLRILALISTAPLFSEKSILAPIKLGLGILIALLIAPSLPA---VDSPLFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L + ++ +G GL +++ ++ G VI +GL+ T + L L
Sbjct: 68 LAGFWLALKQILIGTALGLTMQLTFAAVRMAGEVIGLQMGLSFTTFFDPASGLNTPLLAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ ++ LL ++ H + L S+ +P+ +L F + F+ + L+
Sbjct: 128 LLNLLALLVFISLNGHLWLLSLLADSFHILPLDSQLMDPGAFMALARAGGIIFLNGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228
P + + NI++GLLN++ PQ+ ++ I P + +G L
Sbjct: 188 LPLICMLMTLNIALGLLNRITPQLTVFVIGFPLTLTVGILTF 229
>gi|260779325|ref|ZP_05888217.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605489|gb|EEX31784.1| flagellar biosynthesis protein FliR [Vibrio coralliilyticus ATCC
BAA-450]
Length = 258
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L+ R+G+ + +P S IP+ VR A++ ++ P + ++ F +
Sbjct: 11 VLGQLWWPFFRIGAVFISMPFFGDSLIPVWVRSLLALSIVMISAPLMPPMPAVEFFSMTS 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + G GL++ + G ++S +GL + + ++ L +
Sbjct: 71 LF--LAFEQAIWGLFFGLILHMLFTIFTTLGQIVSMQMGLGMAMMNDPVNGMSVAILGRI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I L ++ H + L++S+ P+G L VN+ F L L+
Sbjct: 129 FLIFCTLLFLSLEGHLVMLDVLIQSFVVWPVGSGL-TSASLQGIVNLFSWMFASALALAL 187
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 188 PAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYTVLVNDTL 247
>gi|212702655|ref|ZP_03310783.1| hypothetical protein DESPIG_00683 [Desulfovibrio piger ATCC 29098]
gi|212673927|gb|EEB34410.1| hypothetical protein DESPIG_00683 [Desulfovibrio piger ATCC 29098]
Length = 278
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 10/248 (4%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L + R+ + + + P L + + Q+RL +A + L P + + + ++
Sbjct: 14 GHLTALLLGMPRLFALVTVAPFLGSAVVTGQIRLLLVLALYLPLHPVIVSHLTDEITLSA 73
Query: 67 AY-------YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
A + L++ E LG + G L + +Q G + G + I
Sbjct: 74 ALSLAVGGRLALLLLKEAVLGLMIGFLAGIVFWTVQSAGFFMDNQRGATMAEGADILSGD 133
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQ 176
+PL L+ + + + SYG P+ Q L F +
Sbjct: 134 QSSPLGQLLFQSLVYIFYTSGAFLAFVGLVYASYGIWPVTQLLPLDVPQGAPLYFAEKVG 193
Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
ML L+ P ++ ++++GL+N+ Q+ +Y ++ P G+ + LC +++
Sbjct: 194 WLMGHMLLLAGPIAAACLLTDVALGLINRFASQLNVYVLAMPIKCGIAAFLLCFYFGLLL 253
Query: 237 YQFSHSFL 244
F
Sbjct: 254 SHAPELFD 261
>gi|225159016|ref|ZP_03725326.1| type III secretion system inner membrane R protein [Opitutaceae
bacterium TAV2]
gi|224802395|gb|EEG20657.1| type III secretion system inner membrane R protein [Opitutaceae
bacterium TAV2]
Length = 252
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 91/240 (37%), Gaps = 2/240 (0%)
Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
P ++ L R +MLLP +P +R+ A F +L + +
Sbjct: 2 PVEWLLVWTLTGLRALGVVMLLPVPGGKVLPAMLRVACAFMFPTLLAGIIPHA-PMPEPP 60
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ ++ + E+ LG G + R+ G + G +I+ +GL + E L
Sbjct: 61 GWPWLAEAAVREMVLGLALGFVGRLVFAGAELAGRLIANELGLVAAPGFDVPTPSQEP-L 119
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
+ IG L +++ H A V+S+ P G + +R
Sbjct: 120 PAFIGSFAGLMFFLMGGHEGALAAFVRSFDFAPAGAARFSVLAGETLTICTAQVIEFGMR 179
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++PF+ V +++ +L + VP++ ++ IS P +G L + + +
Sbjct: 180 MAAPFIALNFVISLAFSILGRAVPRMNVFIISYPVRTLVGLSLLAGAGGLFGRYLWRAMD 239
>gi|254255059|ref|ZP_04948376.1| Type III secretory pathway component EscT [Burkholderia dolosa
AUO158]
gi|124899704|gb|EAY71547.1| Type III secretory pathway component EscT [Burkholderia dolosa
AUO158]
Length = 256
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 83/231 (35%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ L R+G +LP L + + R + ++ P ++ +
Sbjct: 11 GWLLAAALGFARIGPIFFMLPFLDNNVLTGSARNAVIVIVALGFWP---PPLNTVIELGT 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y V EL +G V G L+ GS+I G +S+ ++ + + L +
Sbjct: 68 LPYLAAVAQELTIGAVLGALLAWPFWVFHAAGSLIDNQRGATFSSSVDPANGIDTSELAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + A+ SY Q +++ ++ + + ++
Sbjct: 128 FLNLFVGAVYLHNGGLDVFVRAIDGSYRLCDPLQGCALE--WTAATQIIDAVIVKAVVVA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + + +S+GLL + PQ+ + +S + L + + +
Sbjct: 186 SPVIALLFLCEMSLGLLGRFTPQMNPFSVSMTVKSVVVFGMLLIYMSPLFS 236
>gi|168334563|ref|ZP_02692719.1| flagellar biosynthesis protein FliR [Epulopiscium sp. 'N.t.
morphotype B']
Length = 262
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/203 (20%), Positives = 92/203 (45%), Gaps = 1/203 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI R+ + + L P + + +P V A+ ++++ + + YS
Sbjct: 14 WLLIFVRIVAVLSLFPIILETKVPATVVAMLAIILTMIVFFTIPQGT-ISYANTWLGYSI 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV+ E+ +G V G + ++ L FTG + S GL++ + L + +
Sbjct: 73 LVIKEMLVGMVLGFGVLIFFQVLNFTGQLWSNQGGLSMSQFYDPALGAQIPVLGRFLTLG 132
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+ +H AL+K++ IP+G + +I + ++ + F + +L++P L
Sbjct: 133 FSTIFVLSGGYHYFISALIKTFEYIPLGTQFFNPSISITILDAVAIFFELGFKLATPILG 192
Query: 192 FYIVFNISIGLLNKLVPQIPIYF 214
++ ++ +G+L + VPQ+ ++
Sbjct: 193 TILLIDVGLGILARTVPQMNMFV 215
>gi|218696458|ref|YP_002404125.1| putative Type III secretion protein EpaR [Escherichia coli 55989]
gi|300906601|ref|ZP_07124292.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 84-1]
gi|301303007|ref|ZP_07209134.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 124-1]
gi|218353190|emb|CAU99082.1| putative Type III secretion protein EpaR [Escherichia coli 55989]
gi|300401640|gb|EFJ85178.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 84-1]
gi|300841671|gb|EFK69431.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 124-1]
gi|315256732|gb|EFU36700.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 85-1]
gi|323183413|gb|EFZ68810.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli 1357]
Length = 255
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L + N ++ A
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALFQHYHYELSTLNEIDIA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 72 LFA---AREIIIGLFIACLLSSPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 236
>gi|254228242|ref|ZP_04921671.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio sp.
Ex25]
gi|151939315|gb|EDN58144.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio sp.
Ex25]
Length = 261
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 94/240 (39%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L + R+ +C + LP LS + VR + ++ + P + L +
Sbjct: 8 QTLFLYSLTLPRLMACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-SLPAEAD 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ E+ +G + G + + ++ G ++ G + + + TP
Sbjct: 67 GIWLIVILGKEVLIGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIML 183
L+ + + YAL KSY + PI S F + + +
Sbjct: 127 VLLTQTLITLFFSGGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGV 186
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+S+P + + + L+++ PQ+ ++F++ P + S+ L + + +++ F F
Sbjct: 187 LMSAPLVLAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGLMMDHFEVQF 246
>gi|315179662|gb|ADT86576.1| Flagellar biosynthesis pathway, component FliR [Vibrio furnissii
NCTC 11218]
Length = 258
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 98/242 (40%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L+ R+G+ + +P IP+ VR A++ +++ P + +
Sbjct: 9 SSWLGQLWWPFFRIGAVFVSMPFFGDLLIPVWVRSLLALSITVITAPLMPAMPAVDLMSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G ++S +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAVWGLMFGLILHMLFTVFTLLGQIVSLQMGLGMAMMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ + L ++ H V L++S+ P+G + V++ F L L
Sbjct: 127 RIFLVFTTLLFLALEGHLVVIDVLIQSFIVWPVGSGI-TMLSLQGIVHIFSWMFSAALAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + ++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYGSLVHD 245
Query: 246 GF 247
Sbjct: 246 TL 247
>gi|167572949|ref|ZP_02365823.1| type III secretion system EscT protein [Burkholderia oklahomensis
C6786]
Length = 260
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 3/227 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + + + R +M++P + + VR + ++ +LP
Sbjct: 6 HWLPIVAIAMLRPFGALMIVPVFTPGTLGGSLVRNALVLMIALPVLPVHDAWPAFSPAAG 65
Query: 66 RAY-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
A Y L + EL +G + G + L G +I TA G ++ + + +P
Sbjct: 66 GAPHYLWLALGELCVGALIGFCAAIPFWALDMAGFLIDTARGASMASVLNPLLGAQSSPF 125
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIML 183
+ + L V + + + SY T+P G L FG + + + + L
Sbjct: 126 GMVFSQVFTLLFLVSGGFNTLIETIYASYVTLPPGAPLRFGPDALALLTQQWHLMYELCL 185
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230
R + P L ++ ++++GL+N+ Q+ ++F+S P L L +
Sbjct: 186 RFAMPALAAILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLLLVM 232
>gi|306820133|ref|ZP_07453781.1| flagellar biosynthetic protein FliR [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551911|gb|EFM39854.1| flagellar biosynthetic protein FliR [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 260
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 3/236 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI+ RV +++ P S + IP +++ M S V+LPF+ ++ V+ + +
Sbjct: 16 YMLILSRVLGIVIIAPMFSRNNIPAMLKVGLGMILSYVILPFVVPNTNID--VSSSEFIF 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV+ ELF G GL + + G+ IGL++ S T L +
Sbjct: 74 LVVKELFTGFCIGLCMALIFNIFMAAGANADINIGLSMSQIFDSSIGGNTTISGQLFNVF 133
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
L +D HH + A+V S+ +PI + + + + L P +
Sbjct: 134 AFLLFLSLDIHHLMIRAIVNSFEILPINTIDFYKEGFLDFLIRLNAYILVSSILLVVPII 193
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ NI + + K++PQ+ ++ + P+ I +G + LS+ ++ F
Sbjct: 194 ITLFLGNILLAFMAKVMPQMNVFIVGMPFKIIVGFVIFYLSLPMVKNVVIEIFKKM 249
>gi|295690542|ref|YP_003594235.1| flagellar biosynthetic protein FliR [Caulobacter segnis ATCC 21756]
gi|295432445|gb|ADG11617.1| flagellar biosynthetic protein FliR [Caulobacter segnis ATCC 21756]
Length = 251
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 58/230 (25%), Positives = 120/230 (52%), Gaps = 1/230 (0%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
L+ RVG+ +M +PG+ +P ++RL FA+ +++L P + DT+ V
Sbjct: 15 LVFSRVGAMVMTMPGVGDQSVPPRIRLSFALLMALLLGPLVQDTVP-PIPTTLGGLVGAV 73
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ E+ +G + G ++R++ + L G +IS L+ + S + T + + + ++GL
Sbjct: 74 IHEILIGLMIGSVLRLFMISLTTAGEIISLQTTLSFAQTTNPSMQGSSTAVATFLSMLGL 133
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
+ HH A+VKSY P + + + + V + +F + ++L++P + F
Sbjct: 134 TLIMATGLHHLFIGAIVKSYTLFPFTRAVPVNDAVTLAVRTVAESFSLGVQLAAPVIVFS 193
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+VFN++ GL+ +++P I+F+++P + LG L LS+ I ++ +
Sbjct: 194 LVFNLATGLVGRVMPSFQIFFVTSPLSVILGLSLLALSLGGIAMVWTDRY 243
>gi|167574622|ref|ZP_02367496.1| flagellar biosynthetic protein FliR, putative [Burkholderia
oklahomensis C6786]
Length = 254
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/247 (17%), Positives = 107/247 (43%), Gaps = 5/247 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M+ +PE ++ ++ CR+ + + P + S +P++ R+ ++ ++V LP + +
Sbjct: 1 MSAAPE-MLSRIWWPFCRILAALSAAPIVGESTVPLRARVMLSLLLAVVALPAVA---PV 56
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ A + + ++ +G + G ++ G +I++ +GL + + +
Sbjct: 57 EVAAFSARGALVAAEQILIGLLFGTMLHFTLAIFMMLGYLIASQMGLAMAVMNDPLNGTS 116
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
++S++ ++ +L + ID H V L S+ P+G ++ ++ + + F
Sbjct: 117 SDAISSVLLVVYMLLFFSIDAHLVVTQILYTSFRVWPVGSPVDLLSL-KPLLYQVGWLFA 175
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L++P +F +V I G L++ P I ++ + G L L + + +
Sbjct: 176 STTLLATPIVFATLVLQIGKGYLSRATPGINLFSLGFAITTVFGLLMLGYMLPHLPDHYV 235
Query: 241 HSFLYGF 247
+
Sbjct: 236 RLTQHVL 242
>gi|328958268|ref|YP_004375654.1| flagellar biosynthesis protein FliR [Carnobacterium sp. 17-4]
gi|328674592|gb|AEB30638.1| flagellar biosynthesis protein FliR [Carnobacterium sp. 17-4]
Length = 230
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 92/215 (42%), Gaps = 3/215 (1%)
Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84
+ PG S+ +P ++ +M ++ + ++ L++ E+ LG G
Sbjct: 1 MSPGFSIKGLPSVAKIALSMGITLAAYSAVPVMGQ---EAGTFLFAILILKEVLLGIAIG 57
Query: 85 LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQ 144
+ +++ ++ G+ + +G ++ S + + + + + ++ + HH
Sbjct: 58 FITKLFFSAVEIAGNFVDFQVGFSMGAVYDPSMGINVSYYGKIYYWLSMCVFYLTNLHHV 117
Query: 145 VFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLN 204
V +L++S+ T+PI + +L F + LS+P + ++ + +GL++
Sbjct: 118 VIKSLIQSFQTMPISSTNIGDFGVEGMMKLLGIIFELAFNLSAPMVIVALLTEVILGLIS 177
Query: 205 KLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ VPQI + + P I + + + + +V
Sbjct: 178 RSVPQINVLILGMPLKIVASFVIMLILLPTLVENI 212
>gi|288962717|ref|YP_003453011.1| flagellar biosynthetic protein [Azospirillum sp. B510]
gi|288914983|dbj|BAI76467.1| flagellar biosynthetic protein [Azospirillum sp. B510]
Length = 256
Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 129/231 (55%), Gaps = 1/231 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
F+++ RV + I LLPG + +PM+VR A+ ++VLLP + D + + ++
Sbjct: 20 FVVLARVAAAIGLLPGFGEAAVPMRVRAALAIIVTLVLLPGV-DGLPDRMPEQPVEMLRI 78
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+ E +G GL R++ LQ TG++ + +GL+ SM + + L+ ++ I G
Sbjct: 79 LAGETLVGAYLGLGARLFMAALQTTGALAAQVVGLSNPFSMAAAGFEGGSVLSGVLLIGG 138
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
L L+ D H+ + AL +SYG+ P + + G + F +L TTF + + L++PF+ +
Sbjct: 139 LALLFASDVHYLMIGALARSYGSWPAAEFPDLGMVAQRFAELLATTFRLGVGLAAPFILY 198
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+V N+++GL+N+++P +P+YF++TP ++ LG + ++ F +
Sbjct: 199 GLVMNLALGLVNRVMPAMPVYFVATPGVLMLGLGLFMATAGAMLTAFVAAL 249
>gi|153831560|ref|ZP_01984227.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01]
gi|148872070|gb|EDL70887.1| flagellar biosynthetic protein FliR [Vibrio harveyi HY01]
Length = 258
Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 103/237 (43%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+I+ L+ R+G+ + +P + IP+ VR A++ ++ P + +++ F
Sbjct: 9 SVILGQLWWPFFRIGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G IS +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAMMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I L ++ H V +++S+ P+G + VN+ F L L
Sbjct: 127 RMFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVGSGI-TALSLQGVVNIFGWMFASALAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYTAL 242
>gi|167567198|ref|ZP_02360114.1| flagellar biosynthetic protein FliR, putative [Burkholderia
oklahomensis EO147]
Length = 254
Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/247 (17%), Positives = 107/247 (43%), Gaps = 5/247 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M+ +PE ++ ++ CR+ + + P + S +P++ R+ ++ ++V LP + +
Sbjct: 1 MSAAPE-MLSRIWWPFCRILAALSAAPIVGESTVPLRARVMLSLLLAVVALPAVA---PI 56
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ A + + ++ +G + G ++ G +I++ +GL + + +
Sbjct: 57 EVAAFSARGALVAAEQILIGLLFGTMLHFTLAIFMMLGYLIASQMGLAMAVMNDPLNGTS 116
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
++S++ ++ +L + ID H V L S+ P+G ++ ++ + + F
Sbjct: 117 SDAISSVLLVVYMLLFFSIDAHLVVTQILYTSFRVWPVGSPVDLLSL-KPLLYQVGWLFA 175
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L++P +F +V I G L++ P I ++ + G L L + + +
Sbjct: 176 STTLLATPIVFATLVLQIGKGYLSRATPGINLFSLGFAITTVFGLLMLGYMLPHLPDHYV 235
Query: 241 HSFLYGF 247
+
Sbjct: 236 RLTQHVL 242
>gi|331654349|ref|ZP_08355349.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli M718]
gi|331047731|gb|EGI19808.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli M718]
Length = 255
Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + N ++ A
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSNLNEIDIA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTNGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 236
>gi|319944174|ref|ZP_08018450.1| flagellar biosynthesis protein FliR [Lautropia mirabilis ATCC
51599]
gi|319742469|gb|EFV94880.1| flagellar biosynthesis protein FliR [Lautropia mirabilis ATCC
51599]
Length = 253
Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 99/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L + + R+ P LS IP++ R+ A++ +++ P + +
Sbjct: 11 GWLSALLMPLFRLLGLFSSAPLLSSRNIPVRYRVTAALSLAVLAAPLVHGKTP---SFDD 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ E+ +G GL+ R+ ++ G +I +G + S +
Sbjct: 68 PAFFVLMASEVMIGLAIGLVCRMLLASVEMAGEIIGLQMGFSFAAFFDPSTGSNSNAIGR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L + L + VI+ + A + S +P ++ F + L ++
Sbjct: 128 LFNTMSLTSFAVINGPLLLVAATMNSLERMPANMGTQQFLGRLDIGAVISQVFELGLLMA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P++ + N+S+GL++++ PQ+ ++ I P IG G + L L + ++ +
Sbjct: 188 LPYMALLLFVNLSLGLISRVAPQLNVFAIGFPITIGSGLMLLTLGMPMLYAPLAQMHQAI 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|157162318|ref|YP_001459636.1| type III secretion apparatus protein EpaR [Escherichia coli HS]
gi|170018893|ref|YP_001723847.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli ATCC
8739]
gi|312972920|ref|ZP_07787093.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli 1827-70]
gi|157067998|gb|ABV07253.1| type III secretion apparatus protein EpaR [Escherichia coli HS]
gi|169753821|gb|ACA76520.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli ATCC
8739]
gi|310332862|gb|EFQ00076.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli 1827-70]
gi|323941619|gb|EGB37799.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E482]
gi|332344755|gb|AEE58089.1| type III secretion apparatus protein EpaR [Escherichia coli UMNK88]
Length = 255
Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + N ++ A
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDIA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 72 LFA---AREIIIGLFIACLLSSPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 236
>gi|319898617|ref|YP_004158710.1| flagellar biosynthetic protein FliR [Bartonella clarridgeiae 73]
gi|319402581|emb|CBI76126.1| Flagellar biosynthetic protein FliR [Bartonella clarridgeiae 73]
Length = 259
Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 1/245 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL- 60
+ S E + LI RVG+C+ML+PG+S IPM +RL ++FS+ +LP + D +
Sbjct: 9 SFSIEQSVTIALLIFSRVGTCLMLMPGISSVRIPMSLRLFIGISFSLAILPMVTDFFKVF 68
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + A + + E+ +G G++ Y LQF S+I +IG + Q I DS
Sbjct: 69 SDKSDLALLIRALFAEMLIGATFGVIAHAYLWALQFMSSIIGMSIGFSGQPGHSIIDSTP 128
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
E+ + +++ ++ + D H L+ SY +P+ N + + L F+
Sbjct: 129 ESHVANILVFAAIMLFFASDLHIITIRGLLASYDIVPLAFIPNPEAALTDYREALSRAFL 188
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +++PF+ + I+ NI+IGLLNKL P IP+YFIS P+++ G L + + +++ F+
Sbjct: 189 TTLSIAAPFIIYAILINIAIGLLNKLTPTIPVYFISLPFVMCGGLFLLYILMPELLHLFN 248
Query: 241 HSFLY 245
Sbjct: 249 SELHD 253
>gi|256024633|ref|ZP_05438498.1| putative type III secretion protein [Escherichia sp. 4_1_40B]
gi|300950612|ref|ZP_07164514.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 116-1]
gi|300958193|ref|ZP_07170347.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 175-1]
gi|301026125|ref|ZP_07189599.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 196-1]
gi|301643801|ref|ZP_07243838.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 146-1]
gi|307139548|ref|ZP_07498904.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli H736]
gi|331643548|ref|ZP_08344679.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli H736]
gi|299879820|gb|EFI88031.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 196-1]
gi|300315145|gb|EFJ64929.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 175-1]
gi|300450092|gb|EFK13712.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 116-1]
gi|301077834|gb|EFK92640.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 146-1]
gi|309703220|emb|CBJ02555.1| type III secretion system protein [Escherichia coli ETEC H10407]
gi|331037019|gb|EGI09243.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli H736]
Length = 255
Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALCFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL---LNLNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 236
>gi|242308811|ref|ZP_04807966.1| flagellar biosynthesis protein FliR [Helicobacter pullorum MIT
98-5489]
gi|239524650|gb|EEQ64516.1| flagellar biosynthesis protein FliR [Helicobacter pullorum MIT
98-5489]
Length = 242
Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 97/241 (40%), Gaps = 2/241 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ E + + L++ R + P I Q++ F +I+ +P +
Sbjct: 4 LAYLTEGNVTNFLLLLLRFAGIVAFFPFFENQLINTQIKGIFIFWLTILFIPLVTTLPPT 63
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + E+ LG + +++ + F G +IS A+GL + +
Sbjct: 64 N--MTILEFIIAGITEIMLGFLASFALQIVFGMISFGGELISFAMGLTIANAYDPVTGAQ 121
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + L+ ++ L+ + +D+HH Y + S IP+G + N + F+
Sbjct: 122 KPIVGQLLSLLALMIVLALDYHHLFLYFVADSIKEIPLGGFIYSNNYILYTIKAFSNLFL 181
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I L +S P + ++ +I G++ K PQ + I P I + L + I I+ F
Sbjct: 182 IGLTMSFPIIALILLSDIIFGMIMKAHPQFNLLAIGFPVKIAVAFAVLIVIIPAIIIHFK 241
Query: 241 H 241
Sbjct: 242 R 242
>gi|262284523|gb|ACY41060.1| VscT [Vibrio alginolyticus]
Length = 261
Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 94/238 (39%), Gaps = 4/238 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L + R+ +C + LP LS + VR + ++ + P + L +
Sbjct: 10 LFLYSLTLPRLMACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-SLPAETDGI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E+ +G + G + + ++ G ++ G + + + TP L
Sbjct: 69 WLIMILGKEILIGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + YAL KSY + PI S F + + + +
Sbjct: 129 LTQTLITLFFSGGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLM 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + + + L+++ PQ+ ++F++ P + S+ L + + I++ F F
Sbjct: 189 SAPLVLAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGIMMDHFEVQF 246
>gi|167040312|ref|YP_001663297.1| flagellar biosynthesis protein FliR [Thermoanaerobacter sp. X514]
gi|300914396|ref|ZP_07131712.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X561]
gi|307724368|ref|YP_003904119.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X513]
gi|166854552|gb|ABY92961.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X514]
gi|300889331|gb|EFK84477.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X561]
gi|307581429|gb|ADN54828.1| flagellar biosynthetic protein FliR [Thermoanaerobacter sp. X513]
Length = 260
Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 101/239 (42%), Gaps = 3/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ +L P +P +++ ++++ + N
Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTILKIGLGFFAAVIVFDTMGPV--DLQINNVLD 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +V+ E +G V GL + + G +I +G L + I + + I
Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIHLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ +L +++ H+ +F L KS I IG+ +F + M+ F++ R+S
Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIAIGKVAFDFSGMSQVLTKMVSDMFLLGFRISV 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F
Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPVYLTIIDFLFNRM 247
>gi|116328496|ref|YP_798216.1| endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116331226|ref|YP_800944.1| endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|116121240|gb|ABJ79283.1| Endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116124915|gb|ABJ76186.1| Endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 259
Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 102/241 (42%), Gaps = 3/241 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI+ R+ + + P S I + ++ F+ S++L P + +
Sbjct: 8 FQTFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVTAGFLP-PVPGDMGN 66
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +V+ E+ +G + G LI + Q G + +G + + +++L
Sbjct: 67 YGLVVLAEVLIGMLLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLK 126
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLS 186
++G+L + + +F +L S+ I + + + I+ + + + F++ +LS
Sbjct: 127 NLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYRAMEDAVGAMFLVAFKLS 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ +S L+ K PQ+ I +S P + +G + + ++ Q +F
Sbjct: 187 LPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLISQMGAAFDLS 246
Query: 247 F 247
F
Sbjct: 247 F 247
>gi|329897647|ref|ZP_08272171.1| Flagellar biosynthesis protein FliR [gamma proteobacterium
IMCC3088]
gi|328921096|gb|EGG28505.1| Flagellar biosynthesis protein FliR [gamma proteobacterium
IMCC3088]
Length = 238
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 102/232 (43%), Gaps = 4/232 (1%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75
+ R+ + I+ P +S+ + + +R+ A+ + V+ P + +++
Sbjct: 1 MLRISAMIIAAPLISLDVVSLPIRIVLAIVLTWVIYPLIE---VPNLNPLSPEGMVILVR 57
Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135
E+F+G + ++V L G +S ++GL + M S L+S + I L
Sbjct: 58 EMFVGIAIAVTLQVVNGALILAGQALSMSMGLGMAQIMDPSAGT-VPVLSSFLIIFSTLI 116
Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195
H +F+ +++S+ +PIG + + + F+ + ++ P + ++
Sbjct: 117 FMSFGGHSLLFFLILQSFEFVPIGAAFDLDAVILKVMAWTSMVFLGGILIAMPIMLTMLL 176
Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
N+ +G++ + P + I+ + P +I G L +++ I ++ ++ F
Sbjct: 177 VNLCLGIVTRSAPALNIFAVGFPAMILAGLALLIINLTNIAHRIEWLWVEAF 228
>gi|269967241|ref|ZP_06181305.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
gi|269828097|gb|EEZ82367.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
Length = 261
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 94/238 (39%), Gaps = 4/238 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L + R+ +C + LP LS + VR + ++ + P + L +
Sbjct: 10 LFLYSLTLPRLMACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-TLPAETDGI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E+ +G + G + + ++ G ++ G + + + TP L
Sbjct: 69 WLIMILGKEVLIGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + YAL KSY + PI S F + + + +
Sbjct: 129 LTQTLITLFFSGGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLM 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + + + L+++ PQ+ ++F++ P + S+ L + + I++ F F
Sbjct: 189 SAPLVLAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGIMMDHFEVQF 246
>gi|327399033|ref|YP_004339902.1| type III secretion system inner membrane R protein [Hippea maritima
DSM 10411]
gi|327181662|gb|AEA33843.1| type III secretion system inner membrane R protein [Hippea maritima
DSM 10411]
Length = 262
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 1/239 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ I+ RV S I+ P S + IP QV++ F+ F+++L P + I +++ N Y
Sbjct: 15 FLAFLFILLRVSSIIVFAPIFSSASIPPQVKVAFSFVFAVILYPTVRSYIHIESI-NTLY 73
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + EL + L I GL+ ++ +G ++ + +++ + L
Sbjct: 74 IVSITLRELMFAVLLSLTIHFIWSGLELGAQLVGFNMGFSIANVISPEENIQISVLAEFE 133
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
I +L +I+ H+ A+ S+ + +G NIF F + F + + +P
Sbjct: 134 SIFAILVFLIINGHYVFIQAMTYSFEVLKVGGFSLNQNIFHIFNKLTAVLFDVSFTVLAP 193
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + + G++ + +PQ+ I ++ P I +G + L S + H + F
Sbjct: 194 VIIALFITQVVFGVIARTMPQMNIMIVAFPLSIAIGFITLGASFVFVAESLIHYYHQAF 252
>gi|298382087|ref|ZP_06991684.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|298277227|gb|EFI18743.1| conserved hypothetical protein [Escherichia coli FVEC1302]
Length = 242
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 5/223 (2%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
+ CR+ LLP + IP VR + S L+ + N ++ A ++
Sbjct: 6 VFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDVALFAA--- 62
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
E+ +G L+ GS I G L +++ + + + L L +
Sbjct: 63 REIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARLFNLFSAA 122
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + L +SY P G + + + +SP + +
Sbjct: 123 VYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYASPVIAVML 180
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
+GLL + Q+ + IS L L L + I+
Sbjct: 181 GGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 223
>gi|293416106|ref|ZP_06658746.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B185]
gi|300936204|ref|ZP_07151140.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 21-1]
gi|291432295|gb|EFF05277.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B185]
gi|300458661|gb|EFK22154.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 21-1]
Length = 255
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELST---LNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALLAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 236
>gi|288958051|ref|YP_003448392.1| flagellar biosynthetic protein [Azospirillum sp. B510]
gi|288910359|dbj|BAI71848.1| flagellar biosynthetic protein [Azospirillum sp. B510]
Length = 256
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 1/239 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ RVG+ ++P + +++P + RL FA+A S ++ P + + N
Sbjct: 12 IFVWMLVFLRVGTAFSVMPTIGDAFVPTRARLLFALAVSTLVAPTIRPMLPPM-PGNPFQ 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
LV E+ +G G + R+ L+ G++IS GL + + + + SL+
Sbjct: 71 LMVLVAGEMTVGIFLGTIARLLMGALEVAGTIISLQSGLANAQIFNPALASSGSLPGSLM 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
G +GLL L+ D HH + A+V SY T G + ++ + ++ +FM+ +++S+P
Sbjct: 131 GWLGLLLLFATDLHHLLIMAVVDSYATFVPGAAIPVDDMANMVGQLVSKSFMMGVQMSAP 190
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
FL ++F +++GLLNKL PQ+ ++ + T + LG L++ ++ + F F
Sbjct: 191 FLITGMLFALALGLLNKLAPQVQVFQLFTSVQVLLGLFMFALTLGAMMLFWLSRFESTF 249
>gi|167850353|ref|ZP_02475861.1| SctT [Burkholderia pseudomallei B7210]
Length = 467
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|156976194|ref|YP_001447100.1| flagellar biosynthesis pathway, component FliR [Vibrio harveyi ATCC
BAA-1116]
gi|156527788|gb|ABU72873.1| hypothetical protein VIBHAR_04965 [Vibrio harveyi ATCC BAA-1116]
Length = 258
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 103/237 (43%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+I+ L+ RVG+ + +P + IP+ VR A++ ++ P + +++ F
Sbjct: 9 SVILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G IS +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I L ++ H V +++S+ P+G + VN+ F L L
Sbjct: 127 RMFLIFSTLLFLALEGHLLVIDIVIQSFVIWPVGSGI-TALSLQGVVNIFGWMFASALAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYTAL 242
>gi|293412210|ref|ZP_06654933.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B354]
gi|284922801|emb|CBG35889.1| type III secretion system protein [Escherichia coli 042]
gi|291468981|gb|EFF11472.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B354]
gi|323966653|gb|EGB62085.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli M863]
gi|323978520|gb|EGB73602.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli TW10509]
gi|327251614|gb|EGE63300.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli STEC_7v]
Length = 255
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + N ++ A
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDIA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 236
>gi|269960155|ref|ZP_06174531.1| flagellar biosynthetic protein FliR [Vibrio harveyi 1DA3]
gi|269835126|gb|EEZ89209.1| flagellar biosynthetic protein FliR [Vibrio harveyi 1DA3]
Length = 258
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 103/237 (43%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+I+ L+ RVG+ + +P + IP+ VR A++ ++ P + +++ F
Sbjct: 9 SVILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPPMPEVELFSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G IS +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I L ++ H V +++S+ P+G + VN+ F L L
Sbjct: 127 RMFLIFSTLLFLALEGHLLVIDIVIQSFVVWPVGSGI-TALSLQGVVNIFGWMFASALAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYTAL 242
>gi|218706360|ref|YP_002413879.1| putative type III secretion protein EpaR [Escherichia coli UMN026]
gi|293406352|ref|ZP_06650278.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|300898069|ref|ZP_07116437.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 198-1]
gi|218433457|emb|CAR14359.1| putative Type III secretion protein EpaR [Escherichia coli UMN026]
gi|291426358|gb|EFE99390.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|300358207|gb|EFJ74077.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 198-1]
Length = 255
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + N ++ A
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDVA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 236
>gi|269105052|ref|ZP_06157747.1| type III secretion protein SpaR [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268160687|gb|EEZ39185.1| type III secretion protein SpaR [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 260
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 92/240 (38%), Gaps = 4/240 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L + R+ +C + LP L+ + VR + ++ + P + DL +
Sbjct: 10 LFLYSLTLPRLMACFIFLPILNKQTLGGTLVRNGVLCSLALFIFPMINQQ-DLPAETDGI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E+ LG + G + + ++ G ++ G + + + TP L
Sbjct: 69 WLMVILGKEVLLGMLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + YAL SY + P+ F + + + +
Sbjct: 129 LTQTLITLFFSGGGFVTFIYALFNSYSSWPVISFFPTVTEEWVHFFYAQFEQLMWLGVLM 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+P + + + L+++ PQ+ ++ ++ P + S+ L + + +++ F F
Sbjct: 189 SAPLVLAMFLAEFGLALISRFAPQLNVFSLAMPIKSAIASVLLIVYLALMMDHFQALFSD 248
>gi|144900465|emb|CAM77329.1| Type III secretion system inner membrane R protein
[Magnetospirillum gryphiswaldense MSR-1]
Length = 254
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 1/239 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ FLI R+G+ +M++PGL S +P +VRL FA+A S+VLLP L + +
Sbjct: 10 IYRFFLIFTRIGAALMIVPGLGGSLVPTRVRLIFALAMSLVLLPVLGGGLP-PLPNRLSN 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L+ E +G G+L + L G+ I +GL S + L +
Sbjct: 69 LFFLIGSEAMIGVYLGILTQTLMSTLHVAGTFIGFQVGLTNAFSYDAVAEQQSSTLTAFF 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
L+A++V + HH + A+ SY + GQ L G+ + +L +F L+L++P
Sbjct: 129 TNTALIAIFVTNLHHLMIEAIAGSYAVMVPGQPLPLGDFAETLSKLLSASFNFALQLAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L F I++N+++GL+++L PQI ++FI+ P + G + +++ +I+ F F G
Sbjct: 189 LLAFGIIYNVALGLMSRLSPQIQVFFIALPLQVMAGLWMMMVALPLIIILFLRWFQDGL 247
>gi|167841179|ref|ZP_02467863.1| type III secretion system EscT protein [Burkholderia thailandensis
MSMB43]
Length = 261
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 89/230 (38%), Gaps = 2/230 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + L + R ++L+P S + + R +A S+ +L + +
Sbjct: 8 EWLPMVALSMLRPLGAMLLVPVFSTGTLGGTLARNALVLAISLPVLALHDLWPAVDGARS 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A Y L EL +G V G V L G +I T G ++ + + + +
Sbjct: 68 WAAYLWLACGELSIGLVIGFCAAVPFWALDMAGFLIDTMRGASMASVLNPLLGQQSSMMG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTFMIMLR 184
+ + L + H + AL SY T+P G F Q + + LR
Sbjct: 128 IVFSQVFSLLFMMFGGFHALLEALYASYLTLPPGAAFRFRPAALDFLGQQWQLMYTLCLR 187
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234
+ P + ++ ++++GL+N+ Q+ ++F++ P L + +
Sbjct: 188 FAMPAIVAILLVDMALGLVNRSAQQLNVFFVAMPIKSAFALLMMIICANF 237
>gi|256750758|ref|ZP_05491643.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus
CCSD1]
gi|256750341|gb|EEU63360.1| flagellar biosynthetic protein FliR [Thermoanaerobacter ethanolicus
CCSD1]
Length = 260
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 100/239 (41%), Gaps = 3/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+ R+ +L P +P ++ ++++ + N
Sbjct: 11 VQVFILLFVRMLGIFILTPFFGTKNVPTIFKIGLGFFAAVIVFDTMGPV--DLQINNVLD 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +V+ E +G V GL + + G +I +G L + I + + I
Sbjct: 69 YFIVVISEFIVGLVIGLASMISFSAIYLAGQLIDYQLGFGLVNILDIHSETQVPLMGNFI 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ +L +++ H+ +F L KS I IG+ +F + M+ F++ R+S
Sbjct: 129 YILTILIFMLMNGHYTLFTMLAKSVDIIAIGKVAFDFSGMSQVLTKMVSDMFLLGFRISV 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ ++++G++++ +PQ+ ++ I P I +G L + + + + F
Sbjct: 189 PIILTTLLTDLTLGIISRTIPQLNVFMIGMPAKIFVGIFTLLIMLPVYLTIIDFMFNRM 247
>gi|153832525|ref|ZP_01985192.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio harveyi
HY01]
gi|156974013|ref|YP_001444920.1| Type III secretory pathway, component EscT [Vibrio harveyi ATCC
BAA-1116]
gi|41834186|gb|AAS13324.1| VscT [Vibrio harveyi]
gi|148871320|gb|EDL70192.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio harveyi
HY01]
gi|156525607|gb|ABU70693.1| hypothetical protein VIBHAR_01724 [Vibrio harveyi ATCC BAA-1116]
Length = 260
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 92/240 (38%), Gaps = 4/240 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L + R+ +C + LP L+ + VR + ++ + P + DL +
Sbjct: 10 LFLYSLTLPRLMACFIFLPILNKQTLGGTLVRNGVLCSLALFIFPMINQQ-DLPAETDGI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E+ LG + G + + ++ G ++ G + + + TP L
Sbjct: 69 WLMVILGKEVLLGMLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + YAL SY + P+ F + + + +
Sbjct: 129 LTQTLITLFFSGGGFVAFIYALFNSYSSWPVISFFPTVTEEWVRFFYAQFEQLMWLGVLM 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+P + + + L+++ PQ+ ++ ++ P + S+ L + + +++ F F
Sbjct: 189 SAPLVLAMFLAEFGLALISRFAPQLNVFSLAMPIKSAIASVLLIVYLALMMDHFQALFSD 248
>gi|295696130|ref|YP_003589368.1| flagellar biosynthetic protein FliR [Bacillus tusciae DSM 2912]
gi|295411732|gb|ADG06224.1| flagellar biosynthetic protein FliR [Bacillus tusciae DSM 2912]
Length = 263
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 95/236 (40%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLL-PFLWDTIDLQNFVNRA 67
+ LI+ R+ +M +P S +P V++ A ++++ + + +
Sbjct: 11 VQVWLLILARIIGWVMTVPVFSSRAVPAPVQMGLAGVVALLVAQAVIPAQGAAVAGLALS 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y V+ + +G G + V + G +I +G ++ T + L +
Sbjct: 71 AYLFEVVKQWLIGAAIGFIASVLFTAAEMAGQLIDIQMGFSMVTLFNPQFGTNGSILANW 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + ID H + AL+ S+ I +G + G + + F++ ++L++
Sbjct: 131 QMWLTSVVFLGIDGHLAMLSALLHSFEWIHLGAGIPVGPVAEVVARSVAVLFILGVQLAA 190
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P L ++ ++ + +++ PQ + F++ P I G ++ +++
Sbjct: 191 PLLLTLLLIDVILAFVSRAAPQTNLLFVALPGKILAGWGVALGTLPVLILGIERVM 246
>gi|332162920|ref|YP_004299497.1| flagellar biosynthesis protein fliR [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667150|gb|ADZ43794.1| Flagellar biosynthesis protein fliR [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862335|emb|CBX72495.1| hypothetical protein YEW_GP28260 [Yersinia enterocolitica W22703]
Length = 257
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 102/234 (43%), Gaps = 2/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ +L+L R+ S + P L + ++ ++ +I++ P L + L ++
Sbjct: 12 VFALWLPFVRILSFLHFCPVLQHRAFTRKAKIGMSLLLAILITPMLSQPVILGELLS-MN 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L ++ G + G ++++ LQ G ++S +GL + + + T ++ +I
Sbjct: 71 SLLLTGEQILWGWLFGSMLQLVFAALQAAGQILSMNMGLGMAVMNDPTSGASTTVISQII 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L + ++ H + L KS+ + P+G+ +N ++ S L L+ P
Sbjct: 131 FVFSTLIFFTMNGHLLLITILYKSFISWPMGEAINDFSL-RSLALSLGWIMSSATLLALP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
F ++ S GLLN++ P + ++ + P + G L L L + + +
Sbjct: 190 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINVPDHYLNL 243
>gi|254461302|ref|ZP_05074718.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium
HTCC2083]
gi|206677891|gb|EDZ42378.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium
HTCC2083]
Length = 253
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 117/234 (50%), Gaps = 4/234 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+S L++ RV + + LLP L + IP +V+L ++ S+++ P + D QN + A +
Sbjct: 14 LSFILVLFRVAALVSLLPALGEASIPARVKLVMSVCMSLIVFPIVHDVS--QNSLAGANW 71
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ E+ +G G ++RV+ LQ GS+ + + L+ +G + + L +I
Sbjct: 72 LSAAIAEVGIGLWFGFMLRVFVFCLQIAGSIAAQSTSLS--QILGSAGAEPLPALGHVIT 129
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
G+ + H L+ SY +P GQ + I + V + F + L++PF
Sbjct: 130 TAGMTLALSLGLHVSAVQYLIGSYTILPTGQLPDISTISEAGVAQIAWGFQLAFSLAAPF 189
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+++N+++G++N+ +PQ+ + F+ P + + L +SI +I+ ++ +
Sbjct: 190 FILSLLYNLTLGVINRAMPQLMVAFVGAPVITAGALVLLAISIPVILKTWAGAL 243
>gi|332669211|ref|YP_004452219.1| flagellar biosynthetic protein FliR [Cellulomonas fimi ATCC 484]
gi|332338249|gb|AEE44832.1| flagellar biosynthetic protein FliR [Cellulomonas fimi ATCC 484]
Length = 255
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 97/241 (40%), Gaps = 4/241 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
P + + L R+ + +++ P S +P V++ A+ ++ + P L
Sbjct: 6 ITLPVQAVETTMLASVRMAAFLVIAPPFSQRAVPPFVKVALALGLALAVAPRLEPVPSDT 65
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+ ++ + +G G L+ + +Q GS+I G L T+ +
Sbjct: 66 TPA----FVGALVAQAVIGAGLGFLVSLVFSAVQSAGSLIDLFGGFQLATAYDPLSQTSG 121
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
L + L+ L+ D + V LV+++ +P+G L+ + S+ L F+
Sbjct: 122 AQFGRLYQMTALVLLFASDAYQVVVAGLVRTFDALPLGALLDPAALASTLTEGLTQMFLA 181
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
L+++ P L + ++ +GLL ++ P + + + P I L F L+ +
Sbjct: 182 ALQIAGPLLVVLFLADVGLGLLTRVSPALNAFAMGFPLKILLTLSFGSLAFLALPGVVES 241
Query: 242 S 242
Sbjct: 242 L 242
>gi|304392485|ref|ZP_07374425.1| flagellar biosynthetic protein flir [Ahrensia sp. R2A130]
gi|303295115|gb|EFL89475.1| flagellar biosynthetic protein flir [Ahrensia sp. R2A130]
Length = 237
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 2/230 (0%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75
CRVG C ++LPGLS IP R+ +A ++ + + Q + + +L+
Sbjct: 5 FCRVGGCFIVLPGLSSGRIPGPARIYLTLAVALSIAFARGG--EGQAVIYGSGLLRLIFA 62
Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135
E +G GL R+ L L F G+ I IG N G+ DS ++ L +LI L+
Sbjct: 63 ESLVGLFIGLAARMMMLALSFAGTSIGMVIGFNNLFGQGVEDSESQAALTTLITFSALVL 122
Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195
L+ +DFHH V +L +SY P G + + +L + F I+L L+ PFL + ++
Sbjct: 123 LFQMDFHHAVIASLHRSYEIFPQGAVPEPQMLLVNITRILSSAFFIVLGLAGPFLVYGLI 182
Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
FN +IG+LNKL PQIPI+F+S P LI G + L++ ++ +F +F
Sbjct: 183 FNTAIGVLNKLTPQIPIFFVSLPVLIMGGLMLAYLALPELLRRFVDAFFQ 232
>gi|221209599|ref|ZP_03582580.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
multivorans CGD1]
gi|221170287|gb|EEE02753.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
multivorans CGD1]
Length = 270
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L ++ R+ + ++P + + VR A+ + + P +
Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIASFVAPAIDAAQVASLPFVT 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 73 --WCVLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++
Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHALL 249
>gi|254228806|ref|ZP_04922229.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25]
gi|262396475|ref|YP_003288328.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25]
gi|151938753|gb|EDN57588.1| flagellar biosynthetic protein FliR [Vibrio sp. Ex25]
gi|262340069|gb|ACY53863.1| flagellar biosynthesis protein FliR [Vibrio sp. Ex25]
Length = 258
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 102/237 (43%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
I+ L+ RVG+ + +P + IP+ +R A++ ++ P + ++ F
Sbjct: 9 SAILGQLWWPFFRVGAVFISMPFFGDAIIPVWIRTLLALSIVVITAPLMPPMPQVELFSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G V+S +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAIWGVMFGLILHMLFNVFTMLGQVVSLQMGLGMAMMNDPINGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I L ++ H V +++S+ P+G + VN+ F L L
Sbjct: 127 RIFLIFSTLLFLALEGHLLVIDIVIQSFVVWPVGSGI-TSLSLQGVVNIFGWMFASALAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYTAL 242
>gi|301027458|ref|ZP_07190795.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 69-1]
gi|331664424|ref|ZP_08365330.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli TA143]
gi|331674340|ref|ZP_08375100.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli TA280]
gi|300394966|gb|EFJ78504.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 69-1]
gi|331058355|gb|EGI30336.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli TA143]
gi|331068434|gb|EGI39829.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli TA280]
Length = 255
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + N ++ A
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELSTLNEIDIA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 72 LFA---AREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILA 236
>gi|170744552|ref|YP_001773207.1| flagellar biosynthesis protein FliR [Methylobacterium sp. 4-46]
gi|168198826|gb|ACA20773.1| putative flagellar biosynthetic protein [Methylobacterium sp. 4-46]
Length = 256
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 1/237 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNR 66
+ + +FL+ CR+G C++++PG+S + IP+QVRL A++ + L P +
Sbjct: 13 LFLGIFLMFCRIGGCLLVVPGVSSARIPVQVRLFLALSVTFALSPLILPLFRGRLAAQEP 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A ++ E G + GLL RV+ L+ + ++ A+G + + + L S
Sbjct: 73 AVTFLWILSESLTGFLIGLLGRVFLFVLETVMTAVTMAVGFGTIPGTPMEGNEPQGALVS 132
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ + L+ H ++F LV SY +P G+ L V+ + + F++ LR++
Sbjct: 133 LVMVAATALLFSAGLHWELFRGLVDSYARLPPGEGLGSQAALVQIVDQITSVFVLGLRIT 192
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
SPF+ + IV N+++G NKL P IP+YFI+TP+++ G L L L ++ QF S+
Sbjct: 193 SPFIVYSIVVNLAVGFANKLTPTIPVYFIATPFVMVGGILMLYLISGEVLMQFLGSY 249
>gi|291277528|ref|YP_003517300.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
gi|290964722|emb|CBG40577.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
Length = 254
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 3/247 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+++ + + L++ R G P IP+ +R A +V P L T
Sbjct: 4 LSLLTQNNTEAFLLLLLRFGGIFAFFPFFDSGLIPVSLRGALAFFMCLVFFPILPHT--- 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
++ + +EL G + L++++ L F G IS ++GL + ++ +
Sbjct: 61 PLQLDTVSFLIAGSLELLFGFLASLVLQIIFSTLAFAGDSISFSMGLTMASAYDPATGSQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + ++ ++ +L DFHH +F + +S IP+G + NI + + F
Sbjct: 121 KPIVGQVLMMLAMLIALQSDFHHVIFSFVAQSLEQIPLGHFVTKQNILETIIYDFSLLFS 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ ++ P L ++ +I G++ K PQ + I P I L + + + I I+ FS
Sbjct: 181 VGFAMAFPILGLILLSDIVFGMIMKTHPQFNLLAIGFPVKIALAFIAIIVIIPSIMNVFS 240
Query: 241 HSFLYGF 247
GF
Sbjct: 241 THLKNGF 247
>gi|255323533|ref|ZP_05364664.1| flagellar biosynthetic protein FliR [Campylobacter showae RM3277]
gi|255299570|gb|EET78856.1| flagellar biosynthetic protein FliR [Campylobacter showae RM3277]
Length = 253
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 93/234 (39%), Gaps = 5/234 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L+ R+G ++ P IPM V+ F LL + Y
Sbjct: 12 VITFMLLFARIGGLMLFFPFYGHEQIPMSVKTAF-----SFLLTLFLFPLASIKNGEIYY 66
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E LG GLL+ + LQ G IS +G ++ + + L+ ++++I
Sbjct: 67 LAVEIVSEAALGVCAGLLLHIVFASLQLAGEQISMIMGFSMASVLDPQTGLSSPVISNII 126
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L+ D HH + + S +P+G +I + F +S P
Sbjct: 127 NFLALMTFLAFDGHHLILLFISNSLTHVPLGGFYPSPDIVQYASKSMINLFTFGFIISFP 186
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
L ++ ++ G+L K +PQ + + P I +G L + ++ F
Sbjct: 187 ILALSLLSDLIFGMLMKTMPQFNLLVVGYPIKITIGFAVLIAILAGMMELFRQL 240
>gi|220913715|ref|YP_002489024.1| flagellar biosynthetic protein FliR [Arthrobacter chlorophenolicus
A6]
gi|219860593|gb|ACL40935.1| flagellar biosynthetic protein FliR [Arthrobacter chlorophenolicus
A6]
Length = 252
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 95/241 (39%), Gaps = 3/241 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + ++ L R+ + +++ P + IP +V+ + + + + D +
Sbjct: 7 QPWLEAMLLASVRMIAFLVVAPPFAHHAIPARVKAMLGLGLGLAVSGRVADGY---VPLG 63
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A + +++EL G G L+ + +Q GS+I + G + + +
Sbjct: 64 TAGFITAIVLELATGLALGFLVYLVFAAIQSAGSLIDLSSGFQMAQAFDPQMMVNGAQFT 123
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ + L L+ D +H V L S+ P+ ++ + V + F+ +++
Sbjct: 124 RLLQMAALALLFASDGYHLVIGGLTGSFAAFPLAGGIDLARPVEAMVQAVTGMFLCAVQI 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ ++ +GLL ++ P + + + P I L + + +
Sbjct: 184 AGPLMVVLLLADVGLGLLTRVAPALNAFALGFPLKILLTLVLAGFLFLGLPRIVAVLAEQ 243
Query: 246 G 246
Sbjct: 244 A 244
>gi|158320531|ref|YP_001513038.1| flagellar biosynthesis protein FliR [Alkaliphilus oremlandii
OhILAs]
gi|158140730|gb|ABW19042.1| flagellar biosynthetic protein FliR [Alkaliphilus oremlandii
OhILAs]
Length = 262
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 2/240 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
LI+ R+ ++ P S + +PM +++ A+ S++LLP ++L RA
Sbjct: 13 FQLFLLILTRLTGLFVISPIFSRANVPMTMKIGLAVTLSLILLPLSIHNVNLDINNIRA- 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
E +G + G + +Y + G+VI +G + M + ++ L
Sbjct: 72 LIFFSTTEFLIGIIIGFISFIYFSVVYLAGTVIDIQMGFGMVNIMDPQTNAQMPIMSGLY 131
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ L ++ HH + +++ SY +PIG Q NI + +ML TF + L+LS+
Sbjct: 132 SILISLVFLTVNGHHMLIQSIIHSYEVLPIGFQISINQNIITHLTHMLLETFALSLQLSA 191
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P L + N+ +G+L + +PQ+ I+ + P I +G + + LS+ + F F
Sbjct: 192 PILISIFLVNVILGILARTMPQMNIFMVGMPLKIFIGIIIVFLSLSFFISYSEVVFDKMF 251
>gi|260431742|ref|ZP_05785713.1| flagellar biosynthetic protein FliR [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415570|gb|EEX08829.1| flagellar biosynthetic protein FliR [Silicibacter lacuscaerulensis
ITI-1157]
Length = 257
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 57/235 (24%), Positives = 114/235 (48%), Gaps = 5/235 (2%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
F++ RV + + LLP +P +V+L A+AFS+V+ P + A ++
Sbjct: 20 FVVFLRVSAVVSLLPAFGERSVPTRVKLGVAVAFSLVVAPAVQIEPLAPGM---AAMVRV 76
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+ E +G + G+ +R++ L LQ GSV + + L+ +G + + + L+ + G
Sbjct: 77 ITAETLIGLILGVGLRLFVLALQTAGSVAAQSTSLS--QILGGAAADPLPAMGYLLTLAG 134
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
L +++ H + LV SY P G ++ V + +F + L++PF+
Sbjct: 135 LALAVLLNLHVRAAQFLVHSYMLFPAGIVPAASDVSQWGVAQIAHSFSLAFGLAAPFVIA 194
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+++N+++G++N+ +PQ+ + FI P + G L II+ +S + L
Sbjct: 195 SLIYNLALGVINRAMPQLMVAFIGAPAITFAGLFLLFAGTPIILSVWSDALLSFL 249
>gi|91795013|ref|YP_564664.1| flagellar biosynthetic protein FliR [Shewanella denitrificans
OS217]
gi|91717015|gb|ABE56941.1| flagellar biosynthetic protein FliR [Shewanella denitrificans
OS217]
Length = 259
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ SL+ CR+ M++P L +Y+P+ VR+ +++ ++++ + + A
Sbjct: 12 LIGSLWWPFCRIMGAFMIMPLLGNAYVPVTVRILLSLSIAVLISHLIPSVPPVDALSLSA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y L + +L +G + G ++ + + G+++S +GL + + A L+
Sbjct: 72 VY--LAIEQLLIGVMLGFILYLLLHVMTLLGTIMSMQMGLAIAIMNDPATGDANPILSQW 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ G L +D H LV S+ PIG +L + FV+ + F L L+
Sbjct: 130 FLLFGTLIFLALDGHLVAIGVLVDSFRLWPIGSDLFSLPLL-GFVHRVGWLFAAALMLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ NI+ G+L++ P + I+ + P + +G L + LS+ + ++S L
Sbjct: 189 PAVLAMLMVNITFGVLSRSAPSLNIFSLGFPMTMLMGLLCVLLSLSGVPERYSDLCLEAL 248
>gi|24215309|ref|NP_712790.1| flagellar biosynthetic protein [Leptospira interrogans serovar Lai
str. 56601]
gi|24196410|gb|AAN49808.1| flagellar biosynthetic protein [Leptospira interrogans serovar Lai
str. 56601]
Length = 259
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 100/241 (41%), Gaps = 3/241 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
LI+ R+ + + P S I + ++ F+ S++L P + + +
Sbjct: 8 FQVFLLILSRLMGLLSVAPVFSYPSISVPQKMIFSFLVSVILFPVIAGFLP-PVPGDMGS 66
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +V+ E +G + G LI + Q G + +G + + +++L
Sbjct: 67 YGLVVIAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLK 126
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLS 186
++G+L + + +F +L S+ I + + + I+ + + + F + RLS
Sbjct: 127 NLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYKAMEDAVGAMFFVAFRLS 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ +S L+ K PQ+ I +S P + +G + + +V Q +F
Sbjct: 187 LPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMGAAFDLS 246
Query: 247 F 247
F
Sbjct: 247 F 247
>gi|326386958|ref|ZP_08208571.1| flagellar biosynthetic protein FliR [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208567|gb|EGD59371.1| flagellar biosynthetic protein FliR [Novosphingobium
nitrogenifigens DSM 19370]
Length = 260
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 85/237 (35%), Gaps = 2/237 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ R+G+ ++ P + +P QVR+ + A ++ + W + +
Sbjct: 12 EAEFWRFLFVMTRIGAALVAAPLFGNTGVPPQVRVIMSGAIAVFVCG--WTPVAAPPALL 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ E +G G +++V +I +G+++ ++ L
Sbjct: 70 SLSGMLALAGETTIGLALGFVLQVAFAAPLIAAELIGAGMGMSIASAADPLSGSHSAVLG 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
G++ + I H +V+SY P G F+ L +
Sbjct: 130 QYFGVVLTIVFLGIGGHIDWISLVVESYRVFPPGSAWMTPARLQLIDTFAADMFLTALAM 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P L +V I G++ + P + ++ + P + G L +S +I +
Sbjct: 190 ALPVLLLLLVVQIVTGVIGRSAPALNLFSLGLPAGVLAGITALIISAPLISDNLTDI 246
>gi|38639344|gb|AAR25810.1| BcscT [Burkholderia multivorans E243]
Length = 269
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 82/239 (34%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L ++ R+ + ++P + + VR A+ + + P +
Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQVASLP--F 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + L +Q G +I G P +
Sbjct: 71 VTWCVLVAKEAVVGMLLAGAFSAVLLAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++
Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHALL 249
>gi|146278645|ref|YP_001168804.1| type III secretion system inner membrane R protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556886|gb|ABP71499.1| type III secretion system inner membrane R protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 258
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/247 (24%), Positives = 120/247 (48%), Gaps = 7/247 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+T+ + + + FL+ RVG+ + LLP +P +VRL A+AF+ ++ P + D +
Sbjct: 10 LTLMVQDLFRAGFLVFIRVGAAMALLPAFGEMTLPARVRLTIALAFTAIVFPAVSDGVPA 69
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ A E +G V G+ +R++ L LQ G+V + A+ L+ G
Sbjct: 70 FDGSPVALGI-----EAAIGLVLGISLRLFVLALQTAGTVAAQAVSLS--QMFGSPSGEP 122
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + +++ + GL H ++ L+ SY +P + G++ ++++ TF
Sbjct: 123 QPVIGNVLTLAGLAIAVAGGLHVRLAEFLILSYDLLPAARLPVAGDVADWGLHLIVHTFA 182
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ LS PF+ VFN+++G++N+ +PQ+ ++F+ P L G + L LS + + +
Sbjct: 183 LAFMLSMPFVAASFVFNVALGIINRAMPQLMVFFVGAPALTFGGLVLLALSAPLALGLWV 242
Query: 241 HSFLYGF 247
Sbjct: 243 TRLGDFL 249
>gi|269963168|ref|ZP_06177503.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832132|gb|EEZ86256.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 260
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 93/240 (38%), Gaps = 4/240 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L + R+ +C + LP L+ + VR + ++ + P + DL +
Sbjct: 10 LFLYSLTLPRLMACFIFLPILNKQTLGGTMVRNGVLCSLALFIFPMINQQ-DLPAETDGI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E+ LG + G + + ++ G ++ G + + + TP L
Sbjct: 69 WLMIILGKEVLLGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRL 185
+ + + YAL SY + P+ F + + + +
Sbjct: 129 LTQTLITLFFSGGGFVAFIYALFNSYASWPVISFFPSVTEEWVHFFYAQFEQLMWLGVLM 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+P + + + L+++ PQ+ ++F++ P + S+ L + + +++ F F
Sbjct: 189 SAPLVLAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLALMMNHFQALFSE 248
>gi|94986992|ref|YP_594925.1| Type III secretion component protein SctT [Lawsonia intracellularis
PHE/MN1-00]
gi|94731241|emb|CAJ54604.1| Type III secretion component protein SctT [Lawsonia intracellularis
PHE/MN1-00]
Length = 271
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 90/241 (37%), Gaps = 6/241 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL---WDTIDLQNFVN 65
++ + R+ I ++P + + + Q+R+ +F ++L P L I +
Sbjct: 16 FIAFLIGTPRLFMIIQVVPFMGNNIVTGQLRVVVVFSFYLLLSPALVAQLPHIPEVDPSL 75
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+V+ E F+G G L + ++ G I G + +PL
Sbjct: 76 LPRILAIVIKEGFIGFFLGYLGSMVFWMIESVGLFIDNQRGAAMAAQTDPLSGSQTSPLG 135
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN---IFSSFVNMLQTTFMIM 182
S + + + + K+Y P + + + + +
Sbjct: 136 SFLFQCLVYIFFTSGAFITFLTLIYKTYEFWPPHEFIPMSWKMRLPELIIKQVDWLMAYT 195
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ L+ P ++ ++S+GL+N+ Q+ +Y ++ P + + L ++++ + +
Sbjct: 196 MLLAGPIAVACLLTDVSLGLVNRFASQLNVYVLAMPIKSAVAAFLLIFYFKLLLEKATFL 255
Query: 243 F 243
F
Sbjct: 256 F 256
>gi|108758221|ref|YP_630669.1| FliR/MopE/SpaR family protein [Myxococcus xanthus DK 1622]
gi|108462101|gb|ABF87286.1| FliR/MopE/SpaR family protein [Myxococcus xanthus DK 1622]
Length = 272
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 105/246 (42%), Gaps = 5/246 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
++ ++ L++CRV ++ P L +P ++++ + SIVL P + ++ ++
Sbjct: 17 SAVIFTVALVMCRVMPVLIFSPFLGGEVVPTELKMGIGLTLSIVLYPLIAGSV-TSIPLS 75
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
Y L+ E+F+G ++ + G+++ T G N T +
Sbjct: 76 ALPYIALMAKEVFVGFTIAFVVNTLFEAARVAGNLVDTMSGSNNAQLYVPQLGQQVTLFS 135
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
S + ++ ++ HH V AL S +P+ F + F +++ F +LR+
Sbjct: 136 SFKVQLAVVLFLTLNGHHLVIEALADSLVAVPLDGFPRFHDGPWPFFDLMIRVFADLLRV 195
Query: 186 SSPFLFFY----IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
S + ++++G +N++ PQI ++FIS + L + L + ++ +
Sbjct: 196 SLALAAPAMLATFLTDVALGAINRVAPQIQVFFISMSVKPLVSVLLVFLVLGALMDRMQG 255
Query: 242 SFLYGF 247
+
Sbjct: 256 EMVVML 261
>gi|331005444|ref|ZP_08328823.1| Flagellar biosynthesis protein FliR [gamma proteobacterium
IMCC1989]
gi|330420720|gb|EGG95007.1| Flagellar biosynthesis protein FliR [gamma proteobacterium
IMCC1989]
Length = 255
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L+ R + ++ P S++ +P ++++ + S +L+ L + +N A
Sbjct: 9 FIIVTVLVFIRCSALFLMSPLFSIARVPTRIKVFLLIIISAILVSSLNLQLP-DTSINSA 67
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
EL +G I G ++ +G + + + S + + +L
Sbjct: 68 QLVYYAFGELVIGAAMAFGIFAAFASFSLGGRILDFQMGFGVASLIDPSTNAQAPMIGTL 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ ++ +++D HH + + + P G + F+ + L++
Sbjct: 128 LKMLAVMIFFLVDGHHLLIRGIAYTLAHYPPGTMPKI--DIQIIIKQFGLMFVYGVMLAA 185
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P +F ++ +IS+G+ + +PQ+ ++ + P IG+G L LS++ ++ ++ F
Sbjct: 186 PVIFIILLIDISMGIAARTMPQVNMFIVMLPLKIGVGLFVLMLSLQFLLPLMKKVYISIF 245
>gi|221200563|ref|ZP_03573605.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
multivorans CGD2M]
gi|221209220|ref|ZP_03582211.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
multivorans CGD2]
gi|221170910|gb|EEE03366.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
multivorans CGD2]
gi|221179904|gb|EEE12309.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
multivorans CGD2M]
Length = 270
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L ++ R+ + ++P + + VR A+ + + P +
Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQVASLP--F 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 71 VTWCVLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEAGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++
Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHALL 249
>gi|317486797|ref|ZP_07945613.1| bacterial export protein, family 1 [Bilophila wadsworthia 3_1_6]
gi|316921960|gb|EFV43230.1| bacterial export protein, family 1 [Bilophila wadsworthia 3_1_6]
Length = 273
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 98/244 (40%), Gaps = 8/244 (3%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ---NFVN 65
+++L + + R+ + + P + + + Q+R A ++L P + ++ +
Sbjct: 16 LLALLVGMPRLFMLVQVAPFMGGNILTGQLRTTVVFACYLILHPAIVASLPETQGLSPST 75
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A Y +++ E +G + G L + +Q G I G ++ +PL
Sbjct: 76 FALYGAILVKETLIGMLLGYLSGMLFWTIQCAGFFIDNQRGASMAEGADPLSGEQTSPLG 135
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-----NIFSSFVNMLQTTFM 180
S + + + + SY P+ Q + N+ F + +
Sbjct: 136 SFFFQSAVYLFFSTGAFLALLGVVYASYEIWPVTQLIPLSVFKDINLPLFFAGRVSWLLL 195
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ML LS P + ++ ++S+GL+N+ Q+ +Y ++ P G+ + + +++ +
Sbjct: 196 MMLLLSGPIVVACLLTDVSLGLINRFASQLNVYVLAMPIKSGVAAFLMLFYFMMLLSNAT 255
Query: 241 HSFL 244
F
Sbjct: 256 GLFD 259
>gi|170022953|ref|YP_001719458.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis
YPIII]
gi|169749487|gb|ACA67005.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis
YPIII]
Length = 259
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 100/234 (42%), Gaps = 2/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ +L+L R+ S + P + + ++ A+ +I++ P + + + ++
Sbjct: 14 LFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPVVSEELLSIEN 73
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L ++ G + G ++ + L+ G ++S +GL + + + ++ +I
Sbjct: 74 L-LLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQII 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+L + ++ H L+KS+ + PIG+ +N ++ S L L+ P
Sbjct: 133 FTFSVLIFFTLNGHLLFVTILLKSFSSWPIGEAINDFSL-RSLALSLGWILSSATLLALP 191
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
F ++ S GLLN++ P + ++ + P + G L L L I + H
Sbjct: 192 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 245
>gi|172057871|ref|YP_001814331.1| flagellar biosynthetic protein FliR [Exiguobacterium sibiricum
255-15]
gi|171990392|gb|ACB61314.1| flagellar biosynthetic protein FliR [Exiguobacterium sibiricum
255-15]
Length = 255
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 6/237 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L+ R+ ++ P S +P Q +L A + + T+ + +
Sbjct: 6 FVSVFLLVFGRLVGFLVAAPLFSSKQLPAQHKLAIAAGLAYFASYAVKTTVQVDDID--- 62
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E+ +G GLL Q GS+I +GL + ++ +
Sbjct: 63 -FFFRMGTEVIIGLALGLLASFLLYAPQIAGSIIDLQMGLAMASAYDPMFGGQSPIVGRF 121
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRL 185
++ LL L D H + + S+ P G ++ S V ++ + L++
Sbjct: 122 YYMLTLLVLLASDMHLILLDGIYTSFKIFPPGSAIDVSGEAGMSLVVRVVGLAMLTALQI 181
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + + ++++G L K PQ I+ I + +G L L + S
Sbjct: 182 AMPLVVALFLVDLALGFLAKTAPQFNIFAIGFSVKLLMGYAILFLLAGATITGISRF 238
>gi|191166041|ref|ZP_03027877.1| type III secretion apparatus protein EpaR [Escherichia coli B7A]
gi|190903989|gb|EDV63702.1| type III secretion apparatus protein EpaR [Escherichia coli B7A]
Length = 255
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL---LNLNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFAPILA 236
>gi|28898448|ref|NP_798053.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836300|ref|ZP_01988967.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus AQ3810]
gi|260365108|ref|ZP_05777679.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus K5030]
gi|260876609|ref|ZP_05888964.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus AN-5034]
gi|260895030|ref|ZP_05903526.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus Peru-466]
gi|260900959|ref|ZP_05909354.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus AQ4037]
gi|28806665|dbj|BAC59937.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|149750575|gb|EDM61320.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus AQ3810]
gi|308086001|gb|EFO35696.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus Peru-466]
gi|308093591|gb|EFO43286.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus AN-5034]
gi|308110707|gb|EFO48247.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus AQ4037]
gi|308111490|gb|EFO49030.1| type III secretion apparatus protein SpaR/YscT/HrcT [Vibrio
parahaemolyticus K5030]
gi|328468939|gb|EGF39899.1| translocation protein in type III secretion [Vibrio
parahaemolyticus 10329]
Length = 261
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 97/238 (40%), Gaps = 4/238 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L + R+ +C + LP LS + +R + ++ + P + + L +
Sbjct: 10 LFLYSLTLPRLMACFIFLPILSKQMLGGAMIRNGVLCSLALFIFPVVNEQ-ALPAETDGL 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E+ LG + G + + ++ TG ++ G + + + TP L
Sbjct: 69 WLIVILGKEVLLGMLIGFVAAIPFWAIEATGFLVDNQRGAAMASMFNPTLGSQSTPTAVL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + YAL KSY T PI S F + Q + + +
Sbjct: 129 LTQTLITLFFSGGGFVAFIYALFKSYTTWPILGFFPMVTDAWVSFFYDQFQQLMWLGVLM 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + + + L+++ PQ+ ++F++ P + S+ L + + +++ F F
Sbjct: 189 SAPLVLAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGLMMDHFEALF 246
>gi|310641561|ref|YP_003946319.1| flagellar biosynthetic protein flir [Paenibacillus polymyxa SC2]
gi|309246511|gb|ADO56078.1| Flagellar biosynthetic protein fliR [Paenibacillus polymyxa SC2]
Length = 215
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 4/191 (2%)
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q Y LV E+ +G + G ++ +Q GS I +G + + +
Sbjct: 11 QQVPTDVAYVLLVGREVLIGLLLGFTAYLFMTAIQTAGSFIDLQVGFGMASVFDPMTGAS 70
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN----FGNIFSSFVNMLQ 176
+ I +L I+ HH + A++ SY +P+ + G++ V
Sbjct: 71 TPLTGNFKFAIAVLFFLSINGHHHLLNAILYSYDWVPLTNDFFIKLYGGSVTEFLVRSFA 130
Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
+FM+ ++++P + + ++ +G L K PQ I+ I P I +G L L +
Sbjct: 131 ESFMLAFQIAAPIVVATFLTDVGLGFLAKTAPQFNIFVIGVPLKIIVGLFMLLLLMPSFA 190
Query: 237 YQFSHSFLYGF 247
+ F F F
Sbjct: 191 FIFERLFSVMF 201
>gi|22124446|ref|NP_667869.1| type III secretion system component [Yersinia pestis KIM 10]
gi|45440282|ref|NP_991821.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Microtus str. 91001]
gi|51594684|ref|YP_068875.1| type III secretion apparatus protein EscT/SsaT/YscT [Yersinia
pseudotuberculosis IP 32953]
gi|108810000|ref|YP_653916.1| putative type III secretion apparatus protein [Yersinia pestis
Antiqua]
gi|108813555|ref|YP_649322.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
gi|145600945|ref|YP_001165021.1| type III secretion apparatus protein [Yersinia pestis Pestoides F]
gi|150260679|ref|ZP_01917407.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|153948893|ref|YP_001402766.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pseudotuberculosis IP 31758]
gi|162419337|ref|YP_001608226.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis Angola]
gi|165926709|ref|ZP_02222541.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165936527|ref|ZP_02225095.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Orientalis str. IP275]
gi|166010567|ref|ZP_02231465.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166213916|ref|ZP_02239951.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167402194|ref|ZP_02307667.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167418924|ref|ZP_02310677.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167426142|ref|ZP_02317895.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|186893687|ref|YP_001870799.1| type III secretion protein SpaR/YscT/HrcT [Yersinia
pseudotuberculosis PB1/+]
gi|218927479|ref|YP_002345354.1| putative type III secretion apparatus protein [Yersinia pestis
CO92]
gi|229836527|ref|ZP_04456693.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|229840135|ref|ZP_04460294.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229842216|ref|ZP_04462371.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229904045|ref|ZP_04519158.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|270488970|ref|ZP_06206044.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis KIM D27]
gi|294502344|ref|YP_003566406.1| putative type III secretion apparatus protein [Yersinia pestis
Z176003]
gi|21957233|gb|AAM84120.1|AE013654_9 putative type III secretion system component [Yersinia pestis KIM
10]
gi|45435138|gb|AAS60698.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Microtus str. 91001]
gi|51587966|emb|CAH19569.1| putative type III secretion apparatus protein EscT/SsaT/YscT
[Yersinia pseudotuberculosis IP 32953]
gi|108777203|gb|ABG19722.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
gi|108781913|gb|ABG15971.1| putative type III secretion apparatus protein [Yersinia pestis
Antiqua]
gi|115346090|emb|CAL18958.1| putative type III secretion apparatus protein [Yersinia pestis
CO92]
gi|145212641|gb|ABP42048.1| type III secretion apparatus protein [Yersinia pestis Pestoides F]
gi|149290087|gb|EDM40164.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|152960388|gb|ABS47849.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pseudotuberculosis IP 31758]
gi|162352152|gb|ABX86100.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis Angola]
gi|165915643|gb|EDR34252.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Orientalis str. IP275]
gi|165921332|gb|EDR38556.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165990657|gb|EDR42958.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166204891|gb|EDR49371.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166962918|gb|EDR58939.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167048375|gb|EDR59783.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167054853|gb|EDR64655.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|186696713|gb|ACC87342.1| type III secretion protein SpaR/YscT/HrcT [Yersinia
pseudotuberculosis PB1/+]
gi|229679815|gb|EEO75918.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|229690526|gb|EEO82580.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696501|gb|EEO86548.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229706211|gb|EEO92219.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|262364374|gb|ACY60931.1| putative type III secretion apparatus protein [Yersinia pestis
D182038]
gi|270337474|gb|EFA48251.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis KIM D27]
gi|294352803|gb|ADE63144.1| putative type III secretion apparatus protein [Yersinia pestis
Z176003]
Length = 264
Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +L L + R +++LP + + +R +A ++ + P L+ + + +
Sbjct: 8 LTALALAMMRPYGILLILPLFTARSLGSSLLRNGLIVAIALPVTP-LFLSAPIITNSSPV 66
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ EL +G V G + + + G +I T G + T + + L
Sbjct: 67 TWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVL 126
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLS 186
I + + +QV AL SY ++PIGQ + ++ Q F + L +
Sbjct: 127 FTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGIQPAADLLLFLQTEWQMMFELCLCFA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ +
Sbjct: 187 LPALLVMVLADLSLGLINRSARQLNVFFLAMPIKSALALFLLLISLPYGLHHYLSRMSDT 246
>gi|193071822|ref|ZP_03052711.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E110019]
gi|192954862|gb|EDV85376.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E110019]
Length = 255
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL---LNLNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFAPILA 236
>gi|45657252|ref|YP_001338.1| flagellar biosynthetic protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600490|gb|AAS69975.1| flagellar biosynthetic protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 259
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 100/241 (41%), Gaps = 3/241 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
LI+ R+ + + P S I + ++ F+ S++L P + + +
Sbjct: 8 FQVFLLILSRLMGLLSVAPVFSYPSIGVPQKMIFSFLVSVILFPVIAGFLP-PVPGDMGS 66
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y +V+ E +G + G LI + Q G + +G + + +++L
Sbjct: 67 YGLVVIAEALIGILLGFLISLIFAAFQMAGEFFNVQLGFGYAEILDPVTQTSLPVISTLK 126
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLS 186
++G+L + + +F +L S+ I + + + I+ + + + F + RLS
Sbjct: 127 NLLGMLLFLTLGAYRIMFESLAYSFEKIQVLRFVPEIQNGIYKAMEDAVGAMFFVAFRLS 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ +S L+ K PQ+ I +S P + +G + + +V Q +F
Sbjct: 187 LPVLGIILLVTVSEALMGKAAPQLNILQLSFPIKVTIGLIVMIFITPYLVSQMGAAFDLS 246
Query: 247 F 247
F
Sbjct: 247 F 247
>gi|310659025|ref|YP_003936746.1| flir [Clostridium sticklandii DSM 519]
gi|308825803|emb|CBH21841.1| FliR [Clostridium sticklandii]
Length = 262
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ LI+ RV I + P + IP+ V++ ++ S ++LPFL ++ +
Sbjct: 11 TSINVFLLILSRVIGFISVAPVYGRNGIPLYVKIGLSIIVSYIILPFL--VFEISTPIGS 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ E+ G GL+ +++ G++I +GL++ T +
Sbjct: 69 PELIFMSFKEVITGLGLGLIAQLFFSIFASAGAIIDMELGLSMSQVYDPQIGGQVTVTSK 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRL 185
+ I L ID HH + A++ S+ +P+G + F +F ++ F+ + +
Sbjct: 129 FLDIFAYLIFLYIDGHHYLMRAIINSFYILPLGSAQISNDNFINFTSKLVSYIFVSAITI 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+ + + K++PQ+ ++ + P+ I LG + +S+ I +
Sbjct: 189 AIPIIISIFLGNLLLAFMAKIMPQMNVFIVGMPFKIFLGLIIFIISLPYIGEVIRKILMN 248
Query: 246 GF 247
+
Sbjct: 249 IY 250
>gi|229138468|ref|ZP_04267057.1| Type III secretion system inner membrane R protein [Bacillus cereus
BDRD-ST26]
gi|228645005|gb|EEL01248.1| Type III secretion system inner membrane R protein [Bacillus cereus
BDRD-ST26]
Length = 251
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTTWDV 60
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 61 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 120
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 121 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 181 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 233
>gi|296124297|ref|YP_003632075.1| type III secretion system inner membrane R protein [Planctomyces
limnophilus DSM 3776]
gi|296016637|gb|ADG69876.1| type III secretion system inner membrane R protein [Planctomyces
limnophilus DSM 3776]
Length = 334
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 81/202 (40%), Gaps = 3/202 (1%)
Query: 50 LLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNL 109
++ + N +++ EL +G GL +++ GLQ G +I G L
Sbjct: 115 VMTAAEYSALPTPPENLGQLVLVLLGELVIGLFLGLGVQMVLAGLQMAGQIIDQQGGFGL 174
Query: 110 QTSMGISDSLAETPLNSLIGIIGLLALWVI---DFHHQVFYALVKSYGTIPIGQELNFGN 166
+ + L+ +G + V+ H + ++V+S+ +IP+G+
Sbjct: 175 GEVFNPDLQMNASQSGQLLFWLGTVIFLVLEPLGGHLVMLKSMVESFQSIPVGRAFWEPG 234
Query: 167 IFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL 226
N++Q +F + +R ++P + + + +IG L+ VPQI I + + L
Sbjct: 235 TVELLNNLMQASFSLAIRFAAPIMLVMCLVDAAIGFLSHTVPQINIQAVGFSLKAMVSLL 294
Query: 227 FLCLSIEIIVYQFSHSFLYGFF 248
L ++F FF
Sbjct: 295 LLITLFSTSPAVIVNAFQETFF 316
Score = 37.9 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 6/49 (12%), Positives = 18/49 (36%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT 57
L++ R+ + P +P +R+ ++++ P +
Sbjct: 18 FQIFLLVLVRLSGLALTGPIFGAPAVPTNIRVLLIFVLALLVTPSIGHQ 66
>gi|296445188|ref|ZP_06887148.1| type III secretion system inner membrane R protein [Methylosinus
trichosporium OB3b]
gi|296257362|gb|EFH04429.1| type III secretion system inner membrane R protein [Methylosinus
trichosporium OB3b]
Length = 251
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 77/244 (31%), Positives = 132/244 (54%), Gaps = 1/244 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59
MT+ E + +LF++ CR+G CIM +PG S IP+Q RL A+A +I L P L + +
Sbjct: 1 MTLGVEALAATLFVLFCRIGGCIMAMPGFSSPRIPVQARLYIAIAITIALAPRLVEVVAP 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ + + + L++ EL +G + G L R++ L+ + TA GL + ++
Sbjct: 61 IASSASATGLAVLLVGELLVGVLIGSLARLFFFALETLATAGVTAAGLGNVLGAPMEEAE 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
++S I + ++++D H ++ + SY IPI N+ S + +L F
Sbjct: 121 PLPAMSSFIMLGATALIFLLDLHWEMVRGVFLSYTAIPIRDAFQARNMLSEYTKVLTQAF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++ LR+SSP L F ++ N++ G LN++ PQ+P++F+STP LIGLG + L + F
Sbjct: 181 LVALRISSPLLLFGLIVNLAFGFLNRMTPQVPVFFVSTPLLIGLGCYWFYLMADDFFAAF 240
Query: 240 SHSF 243
SF
Sbjct: 241 ISSF 244
>gi|260856975|ref|YP_003230866.1| type III secretion protein EpaR [Escherichia coli O26:H11 str.
11368]
gi|260869538|ref|YP_003235940.1| type III secretion protein EpaR [Escherichia coli O111:H- str.
11128]
gi|309793920|ref|ZP_07688345.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 145-7]
gi|257755624|dbj|BAI27126.1| type III secretion protein EpaR [Escherichia coli O26:H11 str.
11368]
gi|257765894|dbj|BAI37389.1| type III secretion protein EpaR [Escherichia coli O111:H- str.
11128]
gi|308122327|gb|EFO59589.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 145-7]
gi|323153849|gb|EFZ40085.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli EPECa14]
gi|323180303|gb|EFZ65855.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli 1180]
Length = 255
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL---LNLNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFAPILA 236
>gi|47565437|ref|ZP_00236478.1| flagellar biosynthetic protein fliR, putative [Bacillus cereus
G9241]
gi|52143693|ref|YP_083138.1| flagellar biosynthesis protein FliR [Bacillus cereus E33L]
gi|217959251|ref|YP_002337799.1| flagellar biosynthesis protein FliR [Bacillus cereus AH187]
gi|222095391|ref|YP_002529451.1| flagellar biosynthesis protein flir [Bacillus cereus Q1]
gi|228914346|ref|ZP_04077961.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228945371|ref|ZP_04107726.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|47557427|gb|EAL15754.1| flagellar biosynthetic protein fliR, putative [Bacillus cereus
G9241]
gi|51977162|gb|AAU18712.1| flagellar biosynthetic protein [Bacillus cereus E33L]
gi|217063038|gb|ACJ77288.1| flagellar biosynthetic protein FliR [Bacillus cereus AH187]
gi|221239449|gb|ACM12159.1| flagellar biosynthetic protein [Bacillus cereus Q1]
gi|228814343|gb|EEM60609.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228845340|gb|EEM90376.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 253
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTTWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|42780861|ref|NP_978108.1| flagellar biosynthesis protein FliR [Bacillus cereus ATCC 10987]
gi|229029448|ref|ZP_04185531.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH1271]
gi|229155339|ref|ZP_04283449.1| Type III secretion system inner membrane R protein [Bacillus cereus
ATCC 4342]
gi|229172414|ref|ZP_04299973.1| Type III secretion system inner membrane R protein [Bacillus cereus
MM3]
gi|301053306|ref|YP_003791517.1| flagellar biosynthesis protein [Bacillus anthracis CI]
gi|42736781|gb|AAS40716.1| flagellar biosynthetic protein FliR [Bacillus cereus ATCC 10987]
gi|228610885|gb|EEK68148.1| Type III secretion system inner membrane R protein [Bacillus cereus
MM3]
gi|228628054|gb|EEK84771.1| Type III secretion system inner membrane R protein [Bacillus cereus
ATCC 4342]
gi|228731907|gb|EEL82806.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH1271]
gi|300375475|gb|ADK04379.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
str. CI]
Length = 253
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTTWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|260901182|ref|ZP_05909577.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AQ4037]
gi|308109321|gb|EFO46861.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AQ4037]
Length = 258
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/237 (19%), Positives = 100/237 (42%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
I+ L+ RVG+ + +P + IP+ VR A++ ++ P + ++ F
Sbjct: 9 SAILGQLWWPFFRVGAVFLSMPFFGDALIPIWVRSLLALSIVVITAPLMPTMPTVELFSL 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G IS +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAMMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I L ++ H V +++S+ P+G + + + F L L
Sbjct: 127 RIFLIFSTLLFLSLEGHLLVIDIVIQSFVVWPVGSGI-TALSLQGVITVFGWMFAASLAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYTAL 242
>gi|28901399|ref|NP_801054.1| putative flagellar biosynthetic protein FliR [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836031|ref|ZP_01988698.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AQ3810]
gi|260362953|ref|ZP_05775822.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030]
gi|260880240|ref|ZP_05892595.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AN-5034]
gi|260895357|ref|ZP_05903853.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
Peru-466]
gi|28809946|dbj|BAC62887.1| putative flagellar biosynthetic protein FliR [Vibrio
parahaemolyticus RIMD 2210633]
gi|149750785|gb|EDM61530.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AQ3810]
gi|308085711|gb|EFO35406.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
Peru-466]
gi|308092305|gb|EFO42000.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus
AN-5034]
gi|308112144|gb|EFO49684.1| flagellar biosynthetic protein FliR [Vibrio parahaemolyticus K5030]
gi|328469333|gb|EGF40279.1| putative flagellar biosynthetic protein FliR [Vibrio
parahaemolyticus 10329]
Length = 258
Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 101/237 (42%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
I+ L+ RVG+ + +P + IP+ VR A++ ++ P + ++ F
Sbjct: 9 SAILGQLWWPFFRVGAVFLSMPFFGDALIPIWVRSLLALSIVVITAPLMPTMPTVELFSL 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G + GL++ + G IS +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAIWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAMMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I L ++ H V +++S+ P+G + +N+ F L L
Sbjct: 127 RIFLIFSTLLFLSLEGHLLVIDIVIQSFVVWPVGSGI-TALSLQGVINVFGWMFAASLAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPGRYTAL 242
>gi|327478780|gb|AEA82090.1| flagellar biosynthetic protein FliR [Pseudomonas stutzeri DSM 4166]
Length = 259
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 4/235 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ + CR+ + L P S I ++VR+ A+A ++VL L L
Sbjct: 10 LLAYWWPFCRIMAVFSLAPMFSHKAISVRVRILLALALTLVLGAALPTPPTLDPLSLAGM 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE-TPLNSL 127
+ + ++ +G + GL + + G V+ST +GL++ + ++ + + L
Sbjct: 70 LATI--EQIAMGLLLGLALLLVFTVFTLIGDVVSTQLGLSMAVFNDPMNGVSSASIIYQL 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I+ L + +D H + +S+ PIG L + + + + L ++
Sbjct: 128 YFILLALLFFAVDGHLVTVSIIYQSFVYWPIGSGLFY-DGLQTIAWSMAWVISAALLIAL 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P +F + GLLN++ P + ++ + P I G + L++ + + H
Sbjct: 187 PIVFCMTLVQFCFGLLNRISPAMNLFSLGFPMAILAGLSLIYLTLPNLAEAYLHL 241
>gi|317121831|ref|YP_004101834.1| flagellar biosynthetic protein FliR [Thermaerobacter marianensis
DSM 12885]
gi|315591811|gb|ADU51107.1| flagellar biosynthetic protein FliR [Thermaerobacter marianensis
DSM 12885]
Length = 257
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 84/231 (36%), Gaps = 4/231 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L + R ++ P +P R A+ ++ + P + + Y
Sbjct: 14 FLLCLARTSGLVVASPVFGGGLVPAPARAFLAVLLALSIFPLMP---PVSPPATVLGYGG 70
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
++ E+ +G GL+ + +Q G ++ + G L S + L + ++
Sbjct: 71 ALLAEVAVGLALGLVTALVFAAVQLAGQLLDLSTGFGLSGVFDPVSSQSMPVLGHFLYLV 130
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L D HH + AL +SY + +++ F L LS P L
Sbjct: 131 MWAMLLATDGHHLILRALAESYRRV-PPGGAGLAAGAPVVLDLAGWMFATGLMLSLPVLA 189
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ +++GL+++ VPQ ++ P + + + L + + +
Sbjct: 190 VLVAVMVALGLVSRAVPQFNVFITGLPVQVAVTLVALLAGLPALAAAMTGL 240
>gi|209920315|ref|YP_002294399.1| putative type III secretion protein [Escherichia coli SE11]
gi|300815711|ref|ZP_07095935.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 107-1]
gi|307310522|ref|ZP_07590170.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli W]
gi|209913574|dbj|BAG78648.1| putative type III secretion protein [Escherichia coli SE11]
gi|300531640|gb|EFK52702.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 107-1]
gi|306909417|gb|EFN39912.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli W]
gi|315062166|gb|ADT76493.1| type III secretion system protein [Escherichia coli W]
gi|320202504|gb|EFW77074.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli EC4100B]
gi|323377250|gb|ADX49518.1| type III secretion protein SpaR/YscT/HrcT [Escherichia coli KO11]
gi|324119900|gb|EGC13779.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E1167]
Length = 255
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL---LNLNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL + Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLARYASQLNAFAISLTIKSALAFLILIIYFAPILA 236
>gi|317407763|gb|EFV87690.1| type III secretion apparatus protein SpaR/YscT/HrcT [Achromobacter
xylosoxidans C54]
Length = 266
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 95/234 (40%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
I++ +L + R+ M+LP + +P +R A A +VL+P L +
Sbjct: 12 ILLGTLAMTQPRILGLCMMLPLFNRGLLPGLLRYGVAAAMGLVLVPALAVDYASWS-GGI 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+V E F+G G ++ + + G VI G +L +++ +P+
Sbjct: 71 GQTLLIVAKEAFVGMTMGFIVALPFWIFEAAGFVIDNQRGASLGSTLNPGTGNESSPMGI 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + +V S+ I + +++L T + L
Sbjct: 131 LFNQAFMVFFMISGGWFLLTTLIVNSFQVWSIWAWWPALSPSSAPMMLDLLDTLMRMTLL 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++P + + + + L+++ PQ+ ++F++ P L L L L ++++
Sbjct: 191 YAAPAVVAMFLAEVGLALVSRFAPQLQVFFLAMPIKSALALLVLILYMKVLFGY 244
>gi|254469818|ref|ZP_05083223.1| type III secretion apparatus protein SpaR/YscT/HrcT [Pseudovibrio
sp. JE062]
gi|211961653|gb|EEA96848.1| type III secretion apparatus protein SpaR/YscT/HrcT [Pseudovibrio
sp. JE062]
Length = 280
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 86/231 (37%), Gaps = 3/231 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L L R+ + + + + R M +I L P+ +D +
Sbjct: 15 FLVLLLTFPRIFAVFATSQLFNATLMSRMARNVVVMVIAIPLYPYNLQYVDGFSPTGSM- 73
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ E +G + G I +Q G++I G + +S+ +P+ L
Sbjct: 74 FIVYFFKEYAIGFLIGYTISCLLWAVQSAGTLIDNQRGAAVASSIDPMLGNESSPIGDLF 133
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLS 186
+L L++ + + SY P+ + + +++ +M ++
Sbjct: 134 SRAFILYLFLTPGFFFILTLVYNSYMIFPVTEFVPVLPEEFPELILSIFDNAMRLMFIMA 193
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
+P + + ++ ++++ PQI ++ ++ P G+ + L + ++
Sbjct: 194 APLVILMFLSEFALAIISRFDPQIQVFILAMPIKSGVAVILLTFYLSFLLP 244
>gi|258592486|emb|CBE68795.1| putative Flagellar biosynthetic protein fliR [NC10 bacterium 'Dutch
sediment']
Length = 266
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/213 (20%), Positives = 96/213 (45%), Gaps = 2/213 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
LI+ R+G + P + S++P+ ++ A++ ++ L P L + L + +
Sbjct: 14 FLLILFRLGGLFLTAPIFAGSHLPIPFKIGLALSLTVSLYPLLGKSALLARGMEPFSLAL 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
++ E+ +G V GL R+ +G+ G + +GL + + + + + ++
Sbjct: 74 SIVGEVAVGVVIGLAARLLFVGVSLAGELAGVQMGLGIANVVDPQFPQQASIVAQFLELM 133
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+L + HH A+ S+ +IP+G S V + + ++ LRLSSP
Sbjct: 134 TILTFLTLHGHHAFLEAVWASFESIPLGTFSGAAAAGAASVLVALFGKSLVLALRLSSPI 193
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIG 222
+ ++ N+++GLL ++ PQ+ +
Sbjct: 194 MVAVLITNVAMGLLARVAPQLNFFAFGLSVTFI 226
>gi|126738572|ref|ZP_01754277.1| flagellar biosynthetic protein FliR [Roseobacter sp. SK209-2-6]
gi|126720371|gb|EBA17077.1| flagellar biosynthetic protein FliR [Roseobacter sp. SK209-2-6]
Length = 259
Score = 99.6 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 121/238 (50%), Gaps = 5/238 (2%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ RV + +LP Y+PM+V+L A+AF+ V+ P L + V +
Sbjct: 19 WHFAIVFLRVAAMSSVLPAFGEQYVPMRVKLAIAIAFTFVVAPALPQIGAPDHVV---LF 75
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+LV+ E +G G+ +R++ +GLQ G++ + + L+ +G + A + +++
Sbjct: 76 GRLVVSEAIIGLALGMGVRLFIMGLQTAGTIAAQSTSLS--QVLGGIGAEAMPAIGAVLM 133
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ GL ++ H ++ L+ SY P+G+ V+ + +F + L++PF
Sbjct: 134 VGGLALAVMMGLHVRIAEFLIYSYQFFPVGEFPAASMFSKWGVHRISQSFYMAFTLAAPF 193
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L +++N+++G++N+ +PQ+ ++F+ P + G L L + +I+ + + + F
Sbjct: 194 LVTAVIYNLTLGVINRAMPQLMVFFVGAPVITLGGMLILMVGSPLILDVWMRALMAFF 251
>gi|161520298|ref|YP_001583725.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia multivorans
ATCC 17616]
gi|189353523|ref|YP_001949150.1| type III secretion protein SctT [Burkholderia multivorans ATCC
17616]
gi|160344348|gb|ABX17433.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia multivorans
ATCC 17616]
gi|189337545|dbj|BAG46614.1| type III secretion protein SctT [Burkholderia multivorans ATCC
17616]
Length = 270
Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L ++ R+ + ++P + + VR A+ + + P +
Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGLAVVIAAFVAPAIDAAQIASLPFVT 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 73 --WCVLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++
Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHALL 249
>gi|170737010|ref|YP_001778270.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia
MC0-3]
gi|169819198|gb|ACA93780.1| flagellar biosynthetic protein FliR [Burkholderia cenocepacia
MC0-3]
Length = 265
Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 100/237 (42%), Gaps = 2/237 (0%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
++F CR+ + + P L +P+++RL A+ ++ + P + +
Sbjct: 14 TIFWPFCRIAAALAASPILGDVMVPVRLRLLIALFLALAIQPGIPTMPVIDLLQLEG--V 71
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
+ ++ +G + G + + LQ G++ S+ +GL++ + L S++ +
Sbjct: 72 AAMAEQVLIGGLLGFVFHLVLCALQIFGTIASSQLGLSMAQINDPMNGQMADVLTSVMYV 131
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+ +L + +D H + + +S+ P+G+ + + F + L+ P +
Sbjct: 132 VFILLFFAVDGHLILTSVIARSFAVWPVGRFAFDLDALKHLAFAVGWIFSAAVALALPVM 191
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
F +V + +GLLN++ P + I+ + G L L L + + + +
Sbjct: 192 FATLVVQVGLGLLNRVAPALNIFALGFSITTMFGLLLLTLLLPSLPDHYGRMVEHVL 248
>gi|254512033|ref|ZP_05124100.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium
KLH11]
gi|221535744|gb|EEE38732.1| flagellar biosynthetic protein FliR [Rhodobacteraceae bacterium
KLH11]
Length = 256
Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 109/239 (45%), Gaps = 5/239 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LF + RV + + LLP IP++V+ A AF++++ P + L F
Sbjct: 16 LWHLFAVFLRVSALVSLLPAFGERSIPVRVKFGLAAAFTLIIAPAVPAAGPLPGFPG--- 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L+ E+ +G G+ +R++ L LQ GS+ + A L+ +G + + +
Sbjct: 73 MVGLIGSEILVGLAFGIALRLFVLALQTAGSIAAQATSLS--QILGGAAVEPVPAMGYFL 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ GL ++ H +V SY P G ++ V + +F + L++P
Sbjct: 131 TLSGLALAALLGLHIHAAQFMVHSYMLFPPGTVPAAPDLSQWGVTQITRSFGMAFALATP 190
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
F+ +++N+++G++N+ +PQ+ + F+ P + G L +I+ +S +
Sbjct: 191 FVIASLIYNLALGVINRAMPQLMVAFVGAPAITFAGLFLLFAGTPLILSVWSDALFSFL 249
>gi|114705550|ref|ZP_01438453.1| flagellar biosynthesis protein [Fulvimarina pelagi HTCC2506]
gi|114538396|gb|EAU41517.1| flagellar biosynthesis protein [Fulvimarina pelagi HTCC2506]
Length = 250
Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 81/245 (33%), Positives = 134/245 (54%), Gaps = 2/245 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M+ + + + FL+ CR+G+C+MLLPG S + IP QVRL A A S+ L P L I+
Sbjct: 1 MSEAASAFVFAHFLVFCRIGTCLMLLPGYSSNRIPAQVRLFLAFAISLALSPLLLPLIEP 60
Query: 61 QNF-VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ A +LV E+ G GLL R + + L F G VI+ AIG+ Q + +
Sbjct: 61 LVVGASDARRLELVFSEMMTGFFIGLLGRCFLIALSFVGYVIANAIGMGQQLGP-VYEDS 119
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ + +LI + + +++ + H ++ ALV SY +P + + + L+ TF
Sbjct: 120 PDPAIGTLITMTATVLIFITNLHAEIARALVASYTALPAAEGFGIQASLVNLTDNLKLTF 179
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++ LR++SPF+ + I+ N +IGL NKL PQIP+YF+S P+++ G + I + F
Sbjct: 180 VLCLRIASPFVLYAIIVNFAIGLANKLTPQIPVYFVSLPFVLAGGLILFGYVIGDFLIIF 239
Query: 240 SHSFL 244
++F
Sbjct: 240 MNAFE 244
>gi|228984853|ref|ZP_04145023.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228774803|gb|EEM23199.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 253
Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDISHIKTTWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|45442778|ref|NP_994317.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Microtus str. 91001]
gi|51597655|ref|YP_071846.1| flagellar assembly/export protein, fliR [Yersinia
pseudotuberculosis IP 32953]
gi|108809077|ref|YP_652993.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
gi|108810730|ref|YP_646497.1| flagellar assembly protein [Yersinia pestis Nepal516]
gi|145597799|ref|YP_001161875.1| flagellar assembly protein [Yersinia pestis Pestoides F]
gi|166212074|ref|ZP_02238109.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167466359|ref|ZP_02331063.1| flagellar assembly protein [Yersinia pestis FV-1]
gi|218927894|ref|YP_002345769.1| putative flagellar assembly protein [Yersinia pestis CO92]
gi|45437644|gb|AAS63194.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Microtus str. 91001]
gi|51590937|emb|CAH22593.1| Putative flagellar assembly/export protein, fliR [Yersinia
pseudotuberculosis IP 32953]
gi|108774378|gb|ABG16897.1| flagellar assembly protein [Yersinia pestis Nepal516]
gi|108780990|gb|ABG15048.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
gi|115346505|emb|CAL19381.1| putative flagellar assembly protein [Yersinia pestis CO92]
gi|145209495|gb|ABP38902.1| flagellar assembly protein [Yersinia pestis Pestoides F]
gi|166206820|gb|EDR51300.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. B42003004]
Length = 257
Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 2/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ +L+L R+ S + P + + ++ A+ +I++ P + + ++
Sbjct: 12 LFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPVVSGELLSIEN 71
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L ++ G + G ++ + L+ G ++S +GL + + + ++ +I
Sbjct: 72 L-LLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQII 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+L + ++ H L+KS+ + PIG+ +N + S L L+ P
Sbjct: 131 FTFSVLIFFTLNGHLLFVTILLKSFSSWPIGEAINDFS-LRSLALSLGWILSSATLLALP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
F ++ S GLLN++ P + ++ + P + G L L L I + H
Sbjct: 190 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 243
>gi|183221909|ref|YP_001839905.1| flagellar biosynthetic protein FliR [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911978|ref|YP_001963533.1| endoflagellar biosynthesis pathway protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167776654|gb|ABZ94955.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780331|gb|ABZ98629.1| Flagellar biosynthetic protein FliR [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 260
Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/235 (15%), Positives = 93/235 (39%), Gaps = 3/235 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
S ++ R+ ++ P S I +R+ F+ S+++ P + + + +
Sbjct: 8 FQSFLFVLVRILGLFLVAPFFSSESINFSLRMIFSFMVSLIVYPVVANYMP-PVPGHMIN 66
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ +++ E+ +G G L+ + Q G + IG + + + ++
Sbjct: 67 FGIMILSEMLIGVFIGFLVSLVFSAFQMAGEFFNNQIGFGYTEILDPVTQNSLPAIGTMK 126
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFMIMLRLS 186
++ VI H + L S+ I I ++ + + F++ +++
Sbjct: 127 NLMATALFLVIGAHRFLIETLAYSFEKIRIISFTGKVNSGLYRLVEDAIGAMFVVSFKIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
P + + +++ GL+ K Q+ + +S P + +G+L L ++ I Q
Sbjct: 187 LPVMGILFLVSLAEGLMGKAAQQMNVMSMSFPLKVFIGTLTLIATLTFIATQMVQ 241
>gi|332159964|ref|YP_004296541.1| type III secretory pathway, component EscT [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325664194|gb|ADZ40838.1| Type III secretory pathway, component EscT [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862411|emb|CBX72570.1| secretion system apparatus protein ssaT [Yersinia enterocolitica
W22703]
Length = 264
Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +L L + R +++LP + + +R A ++ + P ++ T L +
Sbjct: 6 HWLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNSVVFAIALPVTP-IFFTTSLLYHDS 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ +EL +G + G + + + G +I T G + T S + +
Sbjct: 65 LTGWFWVLCIELMVGVLIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLR 184
L I + + + V AL SY +P G + I + Q + + L
Sbjct: 125 VLFTQILTVLFLISGGFNLVLTALYSSYEILPAGSGIQPTSAILQFLQSEWQLMYELCLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P + ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ +
Sbjct: 185 FALPAMLVMVLADLSLGLINRSSQQLNVFFLAMPIKSALALLLLLISLPYALHHY 239
>gi|170026113|ref|YP_001722618.1| type III secretion protein SpaR/YscT/HrcT [Yersinia
pseudotuberculosis YPIII]
gi|169752647|gb|ACA70165.1| type III secretion protein SpaR/YscT/HrcT [Yersinia
pseudotuberculosis YPIII]
Length = 264
Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +L L + R +++LP + + +R +A ++ + P L+ + + +
Sbjct: 8 LTALALAMMRPYGILLILPLFTARSLGSSLLRNGLIVAIALPVTP-LFLSAPIITNSSPV 66
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ EL +G V G + + + G +I T G + T + + L
Sbjct: 67 TWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVL 126
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLS 186
I + + +QV AL SY ++PIGQ + ++ Q F + L +
Sbjct: 127 FTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGIQPAADLLLFLQTEWQMMFELCLCFA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ +
Sbjct: 187 LPALLVMVLADLSLGLINRSARQLNVFFLAMPIKSALALFLLLISLPYGLHHYLSRMSDT 246
>gi|160902842|ref|YP_001568423.1| flagellar biosynthetic protein FliR [Petrotoga mobilis SJ95]
gi|160360486|gb|ABX32100.1| flagellar biosynthetic protein FliR [Petrotoga mobilis SJ95]
Length = 257
Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 102/237 (43%), Gaps = 3/237 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ F I RV +P S +++P+ +++ + S ++L + T + +
Sbjct: 10 LWVYFFIFARVAGITFFIPFFSTTFVPVHIKVFITLFISYLVLFEVNGTFPIN--SSPLV 67
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+++ G GL+ + QF G I +G + S + ++ L
Sbjct: 68 IIFYLLMNFVFGSSVGLIANILFYAFQFAGETIGIQMGFAMANVFDPVTSDEVSLVSELS 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +L ++ ++ ++ S+ +P+ + F F L F I L+LS P
Sbjct: 128 FLFSMLLFFIFKGPLILYSIIIDSFNKVPV-VFTLAPDGFMVFSQKLFDVFTIGLQLSMP 186
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
F+ F I+ +++G++++L+PQ+ ++ + P I +G L I I QF+ F
Sbjct: 187 FIAFMILLKVALGIVSRLIPQVNVFMVGIPLEILVGFLLFLGVILIWEDQFTTLFFQ 243
>gi|134294010|ref|YP_001117746.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
vietnamiensis G4]
gi|134137167|gb|ABO58281.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
vietnamiensis G4]
Length = 269
Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L ++ R+ ++++P + I VR A+ + + P +
Sbjct: 13 GTLRPLLYVMPRLLPIMLIVPVFNEQIITGLVRNGIAVVIAAFVAPAIDPAQVASLP--F 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 71 LMWCLLVAKEAVVGLLLAGAFSAVLFAIQGVGFLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + L + +SY PIG + + V T F M++
Sbjct: 131 FLNFVALALFVTAGGLQVLVQLFAQSYAWWPIGSFGPDLSSMLQTFVVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P + ++ + IGL+ + VPQ+ ++ S P L L + L + ++
Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNVFVFSQPLKSALAVLMMVLFLPVVYASLHALL 249
>gi|51894125|ref|YP_076816.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM
14863]
gi|51857814|dbj|BAD41972.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM
14863]
Length = 259
Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 3/228 (1%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
P S ++P QVR+ + L+P + + +VE+ +
Sbjct: 19 MGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIE---VAPGRTEGVHLLTAALVEMVV 75
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G V G L + LQ G+++ +G L T L +L L+ +
Sbjct: 76 GLVIGFLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIAL 135
Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199
D HH + A +SY +P G + + + ++L PF+ ++ ++
Sbjct: 136 DGHHWLIRAFAQSYALVPAGGPVEGTASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVA 195
Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+LN+ V Q+ I+ I +G L L L + + F GF
Sbjct: 196 FAVLNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFEAGF 243
>gi|152975182|ref|YP_001374699.1| flagellar biosynthesis protein FliR [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023934|gb|ABS21704.1| type III secretion system inner membrane R protein [Bacillus
cytotoxicus NVH 391-98]
Length = 253
Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 91/233 (39%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S +P ++ F + SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSVPAMAKVTFGLGLSI----TVADKVDVSHIQTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 VAYAGTQIVIGLALSKIVEILWNIPKMAGHILDFDIGLSQASLFDVNAGAQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + ++KS+ +L N S + L + + P
Sbjct: 123 IFFLIIFISLGGIDYFVATILKSFQYTEAISKLLTTNFLDSLLATLLFAITSAVEIVLPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|229069319|ref|ZP_04202609.1| Type III secretion system inner membrane R protein [Bacillus cereus
F65185]
gi|228713806|gb|EEL65691.1| Type III secretion system inner membrane R protein [Bacillus cereus
F65185]
Length = 253
Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFRYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|167576638|ref|ZP_02369512.1| flagellar biosynthetic protein FliR, putative [Burkholderia
thailandensis TXDOH]
Length = 258
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 91/236 (38%), Gaps = 4/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + CR+ + + P + S +P ++R+ A+ +++ LP + + V
Sbjct: 10 EWLARAWWPFCRILAALSAAPFIGESTVPARMRVMIALFLALIALPAVD---PVAIPVFS 66
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G + G+L G ++++ +GL + + ++
Sbjct: 67 ARGALVAAEQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSG 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +L + +D H V L S+ P+G F L+
Sbjct: 127 FMLVTSILLFFAMDAHLVVVQVLYTSFRVWPVGS-PIGLPALKPLAYQAAWLFSTTTLLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+P +F +V I L++ P I ++ + + G L L ++ + ++
Sbjct: 186 APLVFATVVLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMVKGLPAHYASM 241
>gi|239815245|ref|YP_002944155.1| type III secretion system inner membrane R protein [Variovorax
paradoxus S110]
gi|239801822|gb|ACS18889.1| type III secretion system inner membrane R protein [Variovorax
paradoxus S110]
Length = 239
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 38/219 (17%), Positives = 87/219 (39%), Gaps = 2/219 (0%)
Query: 25 LLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHG 84
+ P +P VR+ + SI L L + ++ + + EL LG G
Sbjct: 1 MTPIFYAVPLPASVRMLLVLGLSIALAFGLSAPVGA--WMGWSELLFSALAELALGATLG 58
Query: 85 LLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQ 144
L I + G ++ +G + + L S + +L ++++ HH
Sbjct: 59 LGILLAFGAFSIAGQLLDVQLGFGIAQVIDPVTQRPIPVLTSAFNYLAVLVFFLLNGHHA 118
Query: 145 VFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLN 204
+ + S P+G + G+ + + F + L++P +F ++ ++G++
Sbjct: 119 LLRGISYSLERFPVGASWSIGHAVAPVLKQAAGLFSLGFALAAPVVFCILLVEFALGVVG 178
Query: 205 KLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ +PQ+ ++ + P I +G + L I + ++
Sbjct: 179 RNLPQMNMFTMGIPVKILVGLVALSFWFAGIGSVMTRAY 217
>gi|319795602|ref|YP_004157242.1| type III secretion protein spar/ysct/hrct [Variovorax paradoxus
EPS]
gi|315598065|gb|ADU39131.1| type III secretion protein SpaR/YscT/HrcT [Variovorax paradoxus
EPS]
Length = 260
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/221 (16%), Positives = 83/221 (37%), Gaps = 6/221 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + ++ L + R+ + ++P S + I VR + + + P + +
Sbjct: 11 EKFVSAVVLTLPRLFAIFSVVPFFSGTMITGIVRSGVLLILAAFMSPLAGEFPGA----S 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
Y + E +G + GL ++ +Q G +I G +
Sbjct: 67 PMTYMLIAGKEALIGLLLGLGFGIFIWAIQSVGDLIDFQTGSANASFFDPVAGHENGATG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIML 183
+G + + + A++ SY P+G + V T F+ ++
Sbjct: 127 EFLGWVVIALFVSAGGLLAMLGAVIDSYRLWPVGSFFPDAGLVLEQFAVRQGDTLFLWIV 186
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLG 224
+L++P +F ++ + GL+ ++ PQ+ ++ + P L
Sbjct: 187 KLAAPIIFVLLLVELGTGLVGRVAPQLNVFVFAQPLKSLLA 227
>gi|223038929|ref|ZP_03609221.1| flagellar biosynthetic protein FliR [Campylobacter rectus RM3267]
gi|222879902|gb|EEF14991.1| flagellar biosynthetic protein FliR [Campylobacter rectus RM3267]
Length = 253
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 5/234 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L+ R+G ++ P + IPM V+ F LL + Y
Sbjct: 12 VITFMLLFARIGGLMLFFPFYAHEQIPMSVKTAF-----SFLLTLFLFPLASIKSGEVYY 66
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ E LG GLL+ + LQ G IS +G ++ + + L+ ++++I
Sbjct: 67 LAVEIVSEAALGVCAGLLLHIVFASLQLAGEQISMIMGFSMASVLDPQTGLSSPVISNII 126
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L+ D HH + + S +P+G +I + F +S P
Sbjct: 127 NFLALMTFLAFDGHHLILLFISNSLTHVPLGGFYPSPDIVQYASKSMINLFTFGFIISFP 186
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
L ++ ++ G+L K +PQ + + P I +G L + ++ F
Sbjct: 187 ILALSLLSDLIFGMLMKTMPQFNLLVVGYPIKITIGFAVLIAILAGMMELFKQL 240
>gi|229058417|ref|ZP_04196801.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH603]
gi|228719926|gb|EEL71516.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH603]
Length = 253
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 96/233 (41%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP+ ++ F +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPVMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|153947704|ref|YP_001399616.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP
31758]
gi|152959199|gb|ABS46660.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis IP
31758]
Length = 257
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 99/234 (42%), Gaps = 2/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ +L+L R+ S + P + + ++ A+ +I++ P + + + +
Sbjct: 12 LFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPV-VSRELLSIE 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L ++ G + G ++ + L+ G ++S +GL + + + ++ +I
Sbjct: 71 SLLLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQII 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+L + +D H ++KS+ + PIG+ +N ++ S L L+ P
Sbjct: 131 FTFSVLIFFTLDGHLLFVTIVLKSFSSWPIGEAINDFSL-RSLALSLGWIISSATLLALP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
F ++ S GLLN++ P + ++ + P + G L L L I + H
Sbjct: 190 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 243
>gi|22127346|ref|NP_670769.1| flagellar biosynthetic protein [Yersinia pestis KIM 10]
gi|150260267|ref|ZP_01916995.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162419491|ref|YP_001604863.1| flagellar biosynthetic protein FliR [Yersinia pestis Angola]
gi|165925143|ref|ZP_02220975.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939015|ref|ZP_02227567.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008694|ref|ZP_02229592.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. E1979001]
gi|167398440|ref|ZP_02303964.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419022|ref|ZP_02310775.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425170|ref|ZP_02316923.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186896789|ref|YP_001873901.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis
PB1/+]
gi|229837390|ref|ZP_04457553.1| Flagellar biosynthesis protein fliR [Yersinia pestis Pestoides A]
gi|229840603|ref|ZP_04460762.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842846|ref|ZP_04462998.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900927|ref|ZP_04516051.1| Flagellar biosynthesis protein fliR [Yersinia pestis Nepal516]
gi|270487692|ref|ZP_06204766.1| putative flagellar biosynthetic protein FliR [Yersinia pestis KIM
D27]
gi|294502772|ref|YP_003566834.1| flagellar biosynthetic protein [Yersinia pestis Z176003]
gi|21960429|gb|AAM87020.1|AE013950_5 putative flagellar biosynthetic protein [Yersinia pestis KIM 10]
gi|149289675|gb|EDM39752.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162352306|gb|ABX86254.1| flagellar biosynthetic protein FliR [Yersinia pestis Angola]
gi|165912971|gb|EDR31596.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923343|gb|EDR40494.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992033|gb|EDR44334.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166963016|gb|EDR59037.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050944|gb|EDR62352.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055933|gb|EDR65714.1| flagellar biosynthetic protein FliR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186699815|gb|ACC90444.1| flagellar biosynthetic protein FliR [Yersinia pseudotuberculosis
PB1/+]
gi|229682266|gb|EEO78358.1| Flagellar biosynthesis protein fliR [Yersinia pestis Nepal516]
gi|229690113|gb|EEO82170.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696969|gb|EEO87016.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705513|gb|EEO91523.1| Flagellar biosynthesis protein fliR [Yersinia pestis Pestoides A]
gi|262360804|gb|ACY57525.1| flagellar biosynthetic protein [Yersinia pestis D106004]
gi|270336196|gb|EFA46973.1| putative flagellar biosynthetic protein FliR [Yersinia pestis KIM
D27]
gi|294353231|gb|ADE63572.1| flagellar biosynthetic protein [Yersinia pestis Z176003]
gi|320016729|gb|ADW00301.1| Flagellar biosynthesis protein fliR [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 259
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 2/234 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ +L+L R+ S + P + + ++ A+ +I++ P + + ++
Sbjct: 14 LFALWLPFVRILSFLHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPVVSGELLSIEN 73
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L ++ G + G ++ + L+ G ++S +GL + + + ++ +I
Sbjct: 74 L-LLAGEQILWGWLFGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQII 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+L + ++ H L+KS+ + PIG+ +N + S L L+ P
Sbjct: 133 FTFSVLIFFTLNGHLLFVTILLKSFSSWPIGEAINDFS-LRSLALSLGWILSSATLLALP 191
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
F ++ S GLLN++ P + ++ + P + G L L L I + H
Sbjct: 192 TTFIMLIVQGSFGLLNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 245
>gi|65319049|ref|ZP_00392008.1| COG1684: Flagellar biosynthesis pathway, component FliR [Bacillus
anthracis str. A2012]
gi|229195980|ref|ZP_04322733.1| Type III secretion system inner membrane R protein [Bacillus cereus
m1293]
gi|228587539|gb|EEK45604.1| Type III secretion system inner membrane R protein [Bacillus cereus
m1293]
Length = 251
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 60
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 61 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 120
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 121 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 181 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 233
>gi|196045099|ref|ZP_03112332.1| flagellar biosynthetic protein FliR [Bacillus cereus 03BB108]
gi|196024101|gb|EDX62775.1| flagellar biosynthetic protein FliR [Bacillus cereus 03BB108]
Length = 253
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 TAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|118477200|ref|YP_894351.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis str. Al
Hakam]
gi|225863626|ref|YP_002749004.1| flagellar biosynthetic protein FliR [Bacillus cereus 03BB102]
gi|229183960|ref|ZP_04311175.1| Type III secretion system inner membrane R protein [Bacillus cereus
BGSC 6E1]
gi|118416425|gb|ABK84844.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al
Hakam]
gi|225790476|gb|ACO30693.1| flagellar biosynthetic protein FliR [Bacillus cereus 03BB102]
gi|228599485|gb|EEK57090.1| Type III secretion system inner membrane R protein [Bacillus cereus
BGSC 6E1]
Length = 253
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTTWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|229078950|ref|ZP_04211502.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock4-2]
gi|229144381|ref|ZP_04272786.1| Type III secretion system inner membrane R protein [Bacillus cereus
BDRD-ST24]
gi|229178176|ref|ZP_04305547.1| Type III secretion system inner membrane R protein [Bacillus cereus
172560W]
gi|229189866|ref|ZP_04316876.1| Type III secretion system inner membrane R protein [Bacillus cereus
ATCC 10876]
gi|228593540|gb|EEK51349.1| Type III secretion system inner membrane R protein [Bacillus cereus
ATCC 10876]
gi|228605306|gb|EEK62756.1| Type III secretion system inner membrane R protein [Bacillus cereus
172560W]
gi|228639012|gb|EEK95437.1| Type III secretion system inner membrane R protein [Bacillus cereus
BDRD-ST24]
gi|228704364|gb|EEL56798.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock4-2]
Length = 251
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ +A SI + D +D+ +
Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTVWDV 60
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 61 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 120
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 121 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 181 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 233
>gi|163800126|ref|ZP_02194027.1| putative flagellar biosynthetic protein FliR [Vibrio sp. AND4]
gi|159175569|gb|EDP60363.1| putative flagellar biosynthetic protein FliR [Vibrio sp. AND4]
Length = 258
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 104/237 (43%), Gaps = 3/237 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+I+ L+ RVG+ + +P + IP+ VR A++ ++ P + +++ F
Sbjct: 9 SVILGQLWWPFFRVGAVFISMPFFGDALIPVWVRSLLALSIVVITAPLMPTMPEVELFSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + + G + GL++ + G IS +GL + + L+ L
Sbjct: 69 TSIF--LALEQAMWGLMFGLILHMLFNVFTMLGQTISLQMGLGMAVMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I L ++ H + +++S+ P+G + VN+ F L L
Sbjct: 127 RMFLIFSTLLFLALEGHLLIIDIVIQSFVVWPVGSGI-TALSLQGVVNIFGWMFASALAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ P + ++ NIS G++N+ P + +Y + P + LG + +S+ + +++
Sbjct: 186 ALPAIASMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSVLISVSGVPSRYTTL 242
>gi|30261772|ref|NP_844149.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. Ames]
gi|47527005|ref|YP_018354.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184606|ref|YP_027858.1| flagellar biosynthesis protein FliR [Bacillus anthracis str.
Sterne]
gi|163939578|ref|YP_001644462.1| flagellar biosynthesis protein FliR [Bacillus weihenstephanensis
KBAB4]
gi|165869561|ref|ZP_02214220.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0488]
gi|167633414|ref|ZP_02391739.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0442]
gi|170706403|ref|ZP_02896863.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0389]
gi|190566285|ref|ZP_03019203.1| flagellar biosynthetic protein FliR [Bacillus anthracis
Tsiankovskii-I]
gi|196033556|ref|ZP_03100968.1| flagellar biosynthetic protein FliR [Bacillus cereus W]
gi|206974879|ref|ZP_03235794.1| flagellar biosynthetic protein FliR [Bacillus cereus H3081.97]
gi|227815459|ref|YP_002815468.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. CDC
684]
gi|229011061|ref|ZP_04168255.1| Type III secretion system inner membrane R protein [Bacillus
mycoides DSM 2048]
gi|229132596|ref|ZP_04261444.1| Type III secretion system inner membrane R protein [Bacillus cereus
BDRD-ST196]
gi|229166623|ref|ZP_04294375.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH621]
gi|229602393|ref|YP_002866161.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0248]
gi|254683270|ref|ZP_05147131.1| flagellar biosynthesis protein FliR [Bacillus anthracis str.
CNEVA-9066]
gi|254723853|ref|ZP_05185639.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. A1055]
gi|254741032|ref|ZP_05198720.1| flagellar biosynthesis protein FliR [Bacillus anthracis str. Kruger
B]
gi|254755275|ref|ZP_05207309.1| flagellar biosynthesis protein FliR [Bacillus anthracis str.
Vollum]
gi|254759811|ref|ZP_05211835.1| flagellar biosynthesis protein FliR [Bacillus anthracis str.
Australia 94]
gi|30256000|gb|AAP25635.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. Ames]
gi|47502153|gb|AAT30829.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178533|gb|AAT53909.1| flagellar biosynthetic protein FliR [Bacillus anthracis str.
Sterne]
gi|163861775|gb|ABY42834.1| type III secretion system inner membrane R protein [Bacillus
weihenstephanensis KBAB4]
gi|164715001|gb|EDR20519.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0488]
gi|167531452|gb|EDR94130.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0442]
gi|170128501|gb|EDS97368.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0389]
gi|190562420|gb|EDV16387.1| flagellar biosynthetic protein FliR [Bacillus anthracis
Tsiankovskii-I]
gi|195993990|gb|EDX57946.1| flagellar biosynthetic protein FliR [Bacillus cereus W]
gi|206746898|gb|EDZ58290.1| flagellar biosynthetic protein FliR [Bacillus cereus H3081.97]
gi|227005684|gb|ACP15427.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. CDC
684]
gi|228616877|gb|EEK73950.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH621]
gi|228650828|gb|EEL06815.1| Type III secretion system inner membrane R protein [Bacillus cereus
BDRD-ST196]
gi|228750233|gb|EEM00065.1| Type III secretion system inner membrane R protein [Bacillus
mycoides DSM 2048]
gi|229266801|gb|ACQ48438.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0248]
gi|324325786|gb|ADY21046.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 253
Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|218231299|ref|YP_002366453.1| flagellar biosynthesis protein FliR [Bacillus cereus B4264]
gi|218896702|ref|YP_002445113.1| flagellar biosynthetic protein FliR [Bacillus cereus G9842]
gi|228900350|ref|ZP_04064579.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis IBL 4222]
gi|228907401|ref|ZP_04071259.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis IBL 200]
gi|228920478|ref|ZP_04083823.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228952151|ref|ZP_04114243.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228964752|ref|ZP_04125859.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar sotto str. T04001]
gi|229043524|ref|ZP_04191233.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH676]
gi|229109224|ref|ZP_04238823.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock1-15]
gi|229149973|ref|ZP_04278199.1| Type III secretion system inner membrane R protein [Bacillus cereus
m1550]
gi|296502369|ref|YP_003664069.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis BMB171]
gi|218159256|gb|ACK59248.1| flagellar biosynthetic protein FliR [Bacillus cereus B4264]
gi|218543336|gb|ACK95730.1| flagellar biosynthetic protein FliR [Bacillus cereus G9842]
gi|228633495|gb|EEK90098.1| Type III secretion system inner membrane R protein [Bacillus cereus
m1550]
gi|228674234|gb|EEL29479.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock1-15]
gi|228725746|gb|EEL76994.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH676]
gi|228795002|gb|EEM42501.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228807505|gb|EEM54032.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228839108|gb|EEM84404.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228852262|gb|EEM97058.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis IBL 200]
gi|228859237|gb|EEN03668.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis IBL 4222]
gi|296323421|gb|ADH06349.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis BMB171]
Length = 253
Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|196039002|ref|ZP_03106309.1| flagellar biosynthetic protein FliR [Bacillus cereus NVH0597-99]
gi|229090731|ref|ZP_04221964.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock3-42]
gi|196030147|gb|EDX68747.1| flagellar biosynthetic protein FliR [Bacillus cereus NVH0597-99]
gi|228692673|gb|EEL46399.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock3-42]
Length = 253
Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTTWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|149189858|ref|ZP_01868138.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1]
gi|148836344|gb|EDL53301.1| putative flagellar biosynthetic protein FliR [Vibrio shilonii AK1]
Length = 258
Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 103/242 (42%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L+ R+G+ + +P + IP+ VR A++ ++ P + +
Sbjct: 9 SQWLGQLWWPFFRIGAAFLAMPFFGDALIPVWVRALLALSIVVITAPLMPAMPAVDLLSM 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + L + G GL++ ++ G ++S +GL + + L+ L
Sbjct: 69 TSLF--LAFEQAMWGLFFGLILHLFFTIFTMLGQIVSLQMGLGMAIMNDPVNGLSVAILG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L ++ H V LV+S+ P+G + ++ + V++ F L L
Sbjct: 127 RIFLLLCTLLFLALEGHLLVIDILVQSFVVWPVGSGITIASL-DNIVSLFGWMFASALAL 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + ++ NIS G++N+ P + +Y + P + LG + L++ I +++
Sbjct: 186 ALPAIVSMLLANISFGVMNRAAPSLNVYALGFPMTMLLGLFSILLTVSGIPSRYTALVHE 245
Query: 246 GF 247
Sbjct: 246 TL 247
>gi|294852959|ref|ZP_06793631.1| flagellar biosynthetic protein FliR [Brucella sp. NVSL 07-0026]
gi|294818614|gb|EFG35614.1| flagellar biosynthetic protein FliR [Brucella sp. NVSL 07-0026]
Length = 245
Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 72/218 (33%), Positives = 127/218 (58%), Gaps = 1/218 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y LQF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223
++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGG 227
>gi|228938881|ref|ZP_04101481.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228971762|ref|ZP_04132383.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228978371|ref|ZP_04138748.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis Bt407]
gi|228781388|gb|EEM29589.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis Bt407]
gi|228787852|gb|EEM35810.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228820730|gb|EEM66755.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326939381|gb|AEA15277.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 253
Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAATQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|157165085|ref|YP_001467383.1| flagellar biosynthesis protein FliR [Campylobacter concisus 13826]
gi|112801903|gb|EAT99247.1| flagellar biosynthetic protein FliR [Campylobacter concisus 13826]
Length = 253
Score = 98.8 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 5/235 (2%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ L+ R+ I+ P S + IP+ V+ +VL P + NF
Sbjct: 13 IVFMLLFARLSGLIVFFPFYSHNQIPLSVKTLLVFVLCVVLFPLSKAHENSINF-----L 67
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ E+ LG GL++ + LQ G IS +G ++ + + + +LI
Sbjct: 68 VGEILGEVMLGLSAGLMLTIIFATLQMAGEQISMVMGFSMASVLDPQTGTNSPVIANLIN 127
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I LL D HH + S +P+G I S +N+ FM +S P
Sbjct: 128 FIALLTFLAFDGHHLLLQFYASSLAVVPLGDFYPRPGIMSYAINLFTNLFMFGFIMSFPI 187
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ ++ + G+L K +PQ + I P + +G L + I+ S L
Sbjct: 188 IALSLLSDSIFGMLMKTMPQFNLLVIGYPIKVTIGFSVLIAILAGIMKIMSDLLL 242
>gi|120609158|ref|YP_968836.1| type III secretion protein SpaR/YscT/HrcT [Acidovorax citrulli
AAC00-1]
gi|120587622|gb|ABM31062.1| type III secretion protein SpaR/YscT/HrcT [Acidovorax citrulli
AAC00-1]
gi|255047058|gb|AAW81016.2| HrcT [Acidovorax citrulli]
Length = 284
Score = 98.8 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 89/238 (37%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R + +++LP + + +VR + + L +
Sbjct: 1 MLGLLALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVA--WGQPSGLLESTSPL 58
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ LV+ E +G + G + V + G +I G N TP+ +L
Sbjct: 59 VFIALVVKEALIGMLIGFAVSVVFWAAEGVGMLIDNQAGYNNIQQTNPLSGQQSTPVGNL 118
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + ++ +++ L SY P+ + + + F + + +L++
Sbjct: 119 LMQLAIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLKI 178
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ P L ++ ++ +GLL+K ++ ++ P L L L + + +Q
Sbjct: 179 AGPVLMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 236
>gi|91200238|emb|CAJ73282.1| similar to flagellar biosynthetic protein FliR [Candidatus Kuenenia
stuttgartiensis]
Length = 262
Score = 98.8 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 52/231 (22%), Positives = 110/231 (47%), Gaps = 3/231 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L L+ RVG ++ P S ++IPM +R+ A+ + +L P L + + +
Sbjct: 16 LMLVFFRVGGILLFAPVFSNTHIPMLLRIAIALILAFILYPNLDKNLH-ELPSELIPFGL 74
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD--SLAETPLNSLIG 129
+V+ E+ +G + G + G ++S +GL++ S E ++
Sbjct: 75 IVVKEIAIGAIVGFAASILFAAFSMAGYLLSNQMGLDMAVIADPSSLSGDEEPTVSVFYN 134
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+I +L L ID HH A+ +S+ +PIG I + +++ +T F+I +++S P
Sbjct: 135 LIAILLLLAIDGHHYFINAIAQSFHAVPIGSFDYTTAILTKILSLFRTLFVIGIKISIPA 194
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
++ +++ L+ K+ +I I+ I+ P I +G + + +S +++
Sbjct: 195 FVVLMLSVVAMALMAKVAKEINIFVIAYPIKIIIGFIVVFVSFPLMIGAMR 245
>gi|115358969|ref|YP_776107.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
AMMD]
gi|170702399|ref|ZP_02893288.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
IOP40-10]
gi|171322218|ref|ZP_02911065.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MEX-5]
gi|172063761|ref|YP_001811412.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MC40-6]
gi|115284257|gb|ABI89773.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
AMMD]
gi|170132693|gb|EDT01132.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
IOP40-10]
gi|171092455|gb|EDT37800.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MEX-5]
gi|171996278|gb|ACB67196.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MC40-6]
Length = 269
Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L ++ R+ + ++P + I VR A+ + + P +
Sbjct: 13 GTLRPLLYVMPRLLPIMFVVPVFNEQIITGLVRNGIAVVIAAFVAPVIDPAQVAALP--F 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 71 LMWCLLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLETFVVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P + ++ + IGL+ + VPQ+ I+ + P L L + L + ++
Sbjct: 191 LAAPVIIVLVLVELGIGLVGRAVPQLNIFVFAQPVKSALAVLMMVLFLPVVYASLHALL 249
>gi|300117308|ref|ZP_07055098.1| flagellar biosynthesis protein FliR [Bacillus cereus SJ1]
gi|298725143|gb|EFI65795.1| flagellar biosynthesis protein FliR [Bacillus cereus SJ1]
Length = 253
Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 93/233 (39%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ +A SI + D +D+
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSI----TVADQVDVSYIKTTWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|117923328|ref|YP_863945.1| flagellar biosynthetic protein FliR [Magnetococcus sp. MC-1]
gi|117607084|gb|ABK42539.1| flagellar biosynthetic protein FliR [Magnetococcus sp. MC-1]
Length = 266
Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 110/233 (47%), Gaps = 2/233 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
LI+ R+ + P S + P ++R+ + +IV+ P + +
Sbjct: 21 VLIMSRLSGLFLAAPFFSRNVGPKRIRVILLLWITIVIYPIVPPWPG-EGNGEVIRMVFT 79
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+VE +G + G++ + +Q G++I +GL++ M + + E L +L+ + G
Sbjct: 80 GVVEFSMGIMIGMIAHWVLVSVQIAGTMIGFEMGLSMAMVMDPTSGVQEGVLANLLYLFG 139
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLF 191
L+ +++ HH + L +S+ ++P+G L G + V + F + L L++P +
Sbjct: 140 LMLFLLLNGHHWLLEGLARSFVSMPLGSPLPHGEPMITIVLQGIVHMFELALLLAAPVVA 199
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ + +GL+N+ PQI ++F++ P +G L + L++ I + +
Sbjct: 200 AAKLLYLGMGLINRASPQIQVFFLAMPVAQLMGFLIMGLTLSIFGQRLTREME 252
>gi|15835467|ref|NP_297226.1| type III secretion inner membrane protein SctT [Chlamydia muridarum
Nigg]
gi|270285647|ref|ZP_06195041.1| type III secretion inner membrane protein SctT [Chlamydia muridarum
Nigg]
gi|270289656|ref|ZP_06195958.1| type III secretion inner membrane protein SctT [Chlamydia muridarum
Weiss]
gi|301337043|ref|ZP_07225245.1| type III secretion inner membrane protein SctT [Chlamydia muridarum
MopnTet14]
gi|7190878|gb|AAF39649.1| type III secretion inner membrane protein SctT [Chlamydia muridarum
Nigg]
Length = 289
Score = 98.4 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 107/243 (44%), Gaps = 7/243 (2%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ R+ S + L+P L P +++ A ++ V+ P + + ++ + +
Sbjct: 31 FLLLSARMLSILALVPFLGAKLFPSPIKIGIAFSWMGVIFPKVIQDTTIAHYQDLDIFYI 90
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGI 130
L++ E+ +G + G L Q GS I+ G+ L+ + + +P
Sbjct: 91 LLIKEIVIGVLIGFLFSFPFYAAQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHY 150
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLR 184
+ W++ H + L++S IPI I+ + + M Q ++ ++
Sbjct: 151 FVTIVFWLVGGHRIILSVLLQSLEVIPIHAVFPEEMMSLRAPIWIAILKMCQLCLIMTIQ 210
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
LS+P ++ ++ +G++N++ PQ+ + ++ + LG LFL L+ IV Q + L
Sbjct: 211 LSAPAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFLGLLFLTLAWWFIVKQIDYFTL 270
Query: 245 YGF 247
F
Sbjct: 271 AWF 273
>gi|37525859|ref|NP_929203.1| flagellar biosynthesis protein FliR [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785288|emb|CAE14229.1| Flagellar biosynthetic protein FliR [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 260
Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 99/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F + RV + P S P +V++ A+ +++L+P L Q +
Sbjct: 11 QFVSEFFWPLVRVLALFSTAPLFSEKQAPKKVKIGLAVMVTLLLMPNLQ---PAQVPIFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+++ ++ +G GL +++ +++ G VI +GL+ T S L
Sbjct: 68 VTAFWVMLQQILIGASLGLTMQIAFAAVRYAGEVIGLQMGLSFATFFDPSGGPNMPILAR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ ++ LL D H + L ++ +PI F F+ + L+
Sbjct: 128 IFNLLTLLLFLAFDGHLWLLSVLADTFQILPIQPLQLSAQGFLLLAQSASMIFINGMMLA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + N+S+G+LN++ PQ+ I+ + P + G L L L I ++ F
Sbjct: 188 LPLITLLLTLNLSLGILNRMTPQLSIFVVGFPLTLTTGILVLTLLIPMLAPFTERMFSEL 247
Query: 247 F 247
F
Sbjct: 248 F 248
>gi|218530778|ref|YP_002421594.1| flagellar biosynthetic protein FliR [Methylobacterium
chloromethanicum CM4]
gi|218523081|gb|ACK83666.1| flagellar biosynthetic protein FliR [Methylobacterium
chloromethanicum CM4]
Length = 258
Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 123/242 (50%), Gaps = 1/242 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + + RVG+ +ML+PGL I ++RL A+ ++VL P + +
Sbjct: 5 LDLLLPGLAAAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPT 64
Query: 61 -QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ +
Sbjct: 65 GNAALAAPALIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGG 124
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ + + + ++G+ + D HH A+ +SY +P + ++ +F
Sbjct: 125 QQAAIGNFLAMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLALHAFSRSF 184
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ +R+S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F
Sbjct: 185 ALAVRISGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLF 244
Query: 240 SH 241
Sbjct: 245 LD 246
>gi|30019813|ref|NP_831444.1| flagellar biosynthesis protein FliR [Bacillus cereus ATCC 14579]
gi|206970706|ref|ZP_03231658.1| flagellar biosynthetic protein FliR [Bacillus cereus AH1134]
gi|29895358|gb|AAP08645.1| Flagellar biosynthetic protein fliR [Bacillus cereus ATCC 14579]
gi|206734342|gb|EDZ51512.1| flagellar biosynthetic protein FliR [Bacillus cereus AH1134]
Length = 253
Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F + SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L++L
Sbjct: 63 AAYAATQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTLFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 MFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|228926804|ref|ZP_04089872.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228832917|gb|EEM78486.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 251
Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 60
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 61 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 120
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 121 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F +
Sbjct: 181 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNM 233
>gi|229127095|ref|ZP_04256092.1| Type III secretion system inner membrane R protein [Bacillus cereus
BDRD-Cer4]
gi|228656211|gb|EEL12052.1| Type III secretion system inner membrane R protein [Bacillus cereus
BDRD-Cer4]
Length = 251
Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F + SI + D +D+ +
Sbjct: 5 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 60
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L++L
Sbjct: 61 AAYAATQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTLFD 120
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 121 MFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 180
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 181 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 233
>gi|49480931|ref|YP_035887.1| flagellar biosynthesis protein FliR [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|218902882|ref|YP_002450716.1| flagellar biosynthetic protein FliR [Bacillus cereus AH820]
gi|228933052|ref|ZP_04095915.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|229121320|ref|ZP_04250551.1| Type III secretion system inner membrane R protein [Bacillus cereus
95/8201]
gi|49332487|gb|AAT63133.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|218539407|gb|ACK91805.1| flagellar biosynthetic protein FliR [Bacillus cereus AH820]
gi|228662165|gb|EEL17774.1| Type III secretion system inner membrane R protein [Bacillus cereus
95/8201]
gi|228826653|gb|EEM72424.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 253
Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 95/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|42524692|ref|NP_970072.1| flagellar biosynthetic protein FliR [Bdellovibrio bacteriovorus
HD100]
gi|39576902|emb|CAE78131.1| flagellar biosynthetic protein FliR [Bdellovibrio bacteriovorus
HD100]
Length = 259
Score = 98.4 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 105/243 (43%), Gaps = 1/243 (0%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
+ E ++ L++ R+ + ++ + V++ ++ S+VL P + ++
Sbjct: 5 SAMTEAQILLFALVLLRMLAYVISSAVFGSPLVNTPVKILLSLVLSMVLYPVVKVG-NVD 63
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
V L + EL +G G L R++ + TG ++S ++GL+
Sbjct: 64 YLVISNEIIGLAVRELIVGLALGFLTRLFFFVVSMTGDLVSMSVGLSAAQLYNPMMGSQG 123
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ + L I+ HH + A+ +SY +P+ F+ Q F++
Sbjct: 124 GVIEQFYSAMATLVFLAINGHHMLISAIAQSYELVPVSSLALNFGPFAEIAVFGQVAFVM 183
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+++ +P L ++ N+++G+L + VPQI + S P I LG + + + +++ + +
Sbjct: 184 AIKMCAPVLVAILIVNLAMGILGRAVPQINVLVTSMPVTIMLGMAVVFICLPLLIMEMNG 243
Query: 242 SFL 244
Sbjct: 244 VVE 246
>gi|119947197|ref|YP_944877.1| flagellar biosynthetic protein FliR [Psychromonas ingrahamii 37]
gi|119865801|gb|ABM05278.1| flagellar biosynthetic protein FliR [Psychromonas ingrahamii 37]
Length = 259
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 3/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + R+ M P +PM+VRL A+ ++++ P + + F +
Sbjct: 10 QWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQPAIDPFSLQ 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A L + +L G G L +++ G IS +GL + ++ ++ +
Sbjct: 70 A--IILSVTQLLWGLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGVSVAIIGR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L L D H + +V+S+ PI Q + G++ ++M+ F ++
Sbjct: 128 LFLFACTLLFLAFDGHLAILALMVESFTIWPIKQGFSLGSLA-LIISMMVWMFASAFAIA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ N S G +NK P + ++ + P + LG L +S I + +
Sbjct: 187 IPAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIYFEILMQA 246
>gi|238759388|ref|ZP_04620553.1| hypothetical protein yaldo0001_4800 [Yersinia aldovae ATCC 35236]
gi|238702415|gb|EEP94967.1| hypothetical protein yaldo0001_4800 [Yersinia aldovae ATCC 35236]
Length = 265
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 91/233 (39%), Gaps = 5/233 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTID 59
+ + + +M L L R+ LP LS + ++ C A+ ++ L PF
Sbjct: 12 LYSTFQTGLMKLALAWVRIAPVFFFLPFLSSKLLNSGMIKNCVAIFLALGLWPFFSAR-- 69
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ ++++ EL +G V ++ + L G +I G + ++ ++ +
Sbjct: 70 -EINWEETSLGEIIIYELAIGLVLAFILSLPFLIANIIGELIDNQRGATISDTIDPANGV 128
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ ++ L+ I ++ +Q+ L +SY +P + L
Sbjct: 129 ESSEMSVLVSHIVVMIFLAQGGMYQLAQTLAESYRLLPFAGGFTHFDSLP-LGRWLNQLV 187
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
+ + L++P L + +++GL ++ PQ+ + +S + + L
Sbjct: 188 VQGIILAAPILVTLFITEVALGLYSRFCPQLNAFSLSLTIKSAVAFMVFLLYF 240
>gi|163781851|ref|ZP_02176851.1| flagellar biosynthetic protein FliR [Hydrogenivirga sp. 128-5-R1-1]
gi|159883071|gb|EDP76575.1| flagellar biosynthetic protein FliR [Hydrogenivirga sp. 128-5-R1-1]
Length = 254
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 107/245 (43%), Gaps = 3/245 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M ++++ L+ RV + + ++P ++P +R+ A A + +L ++ ++
Sbjct: 1 MITVDTNSLLTILLLFFRVFAFMFMVPMFGTFFLPNIIRVYLAFAVAASIL--MFSDLEP 58
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ +SKL + E+ G + G +R+ + G VI+ GL
Sbjct: 59 LQISSALEFSKLALQEVIFGFLSGFFLRLLFDTVFVAGEVIAVNTGLGFLMMFLPQQP-Q 117
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
T L ++ + V+ L +S+ ++PIG + +F+++ +F
Sbjct: 118 TTVLAGFSTLMASTLFLAVGGAEAVYVGLAQSFNSVPIGSFDIYSMNGKAFLSLFYKSFS 177
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ ++L+ P L ++ NI + ++N+ +PQI ++ + P + +G L LS+ +I
Sbjct: 178 LGVKLALPVLIAAMLTNIILAVINRFIPQINVFMVGLPLQVMVGLTVLLLSLPVIGLVLI 237
Query: 241 HSFLY 245
Sbjct: 238 SYMRE 242
>gi|218887501|ref|YP_002436822.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218758455|gb|ACL09354.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 278
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 6/243 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---LQNFVN 65
++++ + R+ + P L+ S + Q+R+ A + + P + + + +
Sbjct: 23 LLAVVAGMPRLFMVAQVAPFLAGSVVTGQLRMVLVFACYLPVHPVILGQLPKGSVFDLTL 82
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+Y LV+ E +G V GLL + +Q G +I G ++ TP
Sbjct: 83 LGHYGALVLKESLMGLVLGLLAGIAFWTVQSAGFLIDNQRGASMAEESDPMSGEQTTPTG 142
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS---SFVNMLQTTFMIM 182
+ + + + L SY P+ F + M
Sbjct: 143 AFLLQTMMYLFYTSGAFLAFLGLLYASYEIWPVPSLAPLAWSIEVPLLFAGRVAWLMSHM 202
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ L+ P + ++ +IS+GL+N+ Q+ +Y ++ P + SL L L + +
Sbjct: 203 VLLAGPLVVACLLADISLGLVNRFASQLNVYVLAMPVKSAVASLLLVLYFGALAAKTPDL 262
Query: 243 FLY 245
F
Sbjct: 263 FAE 265
>gi|254477385|ref|ZP_05090771.1| flagellar biosynthetic protein FliR [Ruegeria sp. R11]
gi|214031628|gb|EEB72463.1| flagellar biosynthetic protein FliR [Ruegeria sp. R11]
Length = 259
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/234 (21%), Positives = 114/234 (48%), Gaps = 5/234 (2%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
++ RV + + +LP Y+P++V+L A+AF+ V+ P L + A Y+
Sbjct: 23 IVFLRVSAMVAMLPAFGEQYVPVRVKLAIALAFTFVVAPALPLFPAPDTPLQYAGYAA-- 80
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
E +G G+ IR++ +Q G++ + + L +G + A + +++ I L
Sbjct: 81 -SEAIIGLALGVGIRLFIHAIQTAGTIAAQSTSLA--QVLGGIGAEAMPAIGAVLLISAL 137
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
++ H + ++ SY P+G+ + V+ + F + L++PFL
Sbjct: 138 ALAVMLGIHVRAAEFMIYSYMMFPMGEFPAAMGLSDWGVHRISRAFSLGFSLAAPFLIGA 197
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+++N+++G++N+ +PQ+ + F+ P + G L ++ +++ +S + + F
Sbjct: 198 LIYNLTLGVINRAMPQLMVAFVGAPVVTFGGLAILMVASPMLLEIWSTALMSFF 251
>gi|148558044|ref|YP_001257996.1| flagellar biosynthesis protein FliR [Brucella ovis ATCC 25840]
gi|148369329|gb|ABQ62201.1| flagellar biosynthetic protein FliR [Brucella ovis ATCC 25840]
Length = 239
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 68/210 (32%), Positives = 120/210 (57%), Gaps = 1/210 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVN 65
I+++ L CR+G+C+ML+PG+S + IP+QVRL A+A S +LP + + +
Sbjct: 10 EIILAAVLAFCRIGACLMLMPGISSARIPLQVRLFIALACSFAVLPLVLQRIVTAVDAGQ 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+L++ E+F+G + G+L +Y QF ++++ A+G + + I+++ + L
Sbjct: 70 PWTLFRLMVGEMFIGALIGILAHIYFWAQQFMANMMAMAVGYSGSPADSITENEPQATLA 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+++ L +V D H ++F AL+ SY IP+ F + L F+ LR+
Sbjct: 130 TIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFTDALSAAFLATLRI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFI 215
++PF+ F I+ N +IGL+NKL P IP+YFI
Sbjct: 190 AAPFIVFAILVNFAIGLVNKLTPAIPVYFI 219
>gi|229160730|ref|ZP_04288722.1| Type III secretion system inner membrane R protein [Bacillus cereus
R309803]
gi|228622745|gb|EEK79579.1| Type III secretion system inner membrane R protein [Bacillus cereus
R309803]
Length = 253
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 93/233 (39%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F + SI + D +D+
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSYIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLAKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|16799761|ref|NP_470029.1| flagellar biosynthesis protein FliR [Listeria innocua Clip11262]
gi|16413138|emb|CAC95918.1| lin0686 [Listeria innocua Clip11262]
Length = 253
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ RV S + P L IP V++ F MA SI + +D+
Sbjct: 4 EFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVA----TGVDVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + Y L+KS+ L + L + ++
Sbjct: 120 ILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIVLAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 239
>gi|163802011|ref|ZP_02195907.1| translocation protein in type III secretion [Vibrio sp. AND4]
gi|159174152|gb|EDP58960.1| translocation protein in type III secretion [Vibrio sp. AND4]
Length = 260
Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 91/240 (37%), Gaps = 4/240 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L + R+ +C + LP L+ + VR + ++ + P + L +
Sbjct: 10 LFLYSLTLPRLMACFIFLPILNKQMLGGTMVRNGVLCSLALFIFPMINQQT-LPEETDGI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ E+ LG + G + + + G ++ G + + + TP L
Sbjct: 69 WLMVILGKEILLGLLIGFVAAIPFWAIDAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + YAL +SY + P+ F + + + +
Sbjct: 129 LTQTLITLFFSGGGFIAFMYALFQSYVSWPVVSFFPTVTEEWVHFFYAQFEQLMWLGVLM 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+P + + + L+++ PQ+ ++ ++ P + SL L + + +++ F F
Sbjct: 189 SAPLVLAMFLAEFGLALISRFAPQLNVFSLAMPIKSAVASLLLIVYLALMINHFEALFFE 248
>gi|256019341|ref|ZP_05433206.1| putative Type III secretion protein EpaR [Shigella sp. D9]
gi|300820659|ref|ZP_07100810.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 119-7]
gi|331678845|ref|ZP_08379519.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli H591]
gi|332280455|ref|ZP_08392868.1| type III secretion apparatus protein EpaR [Shigella sp. D9]
gi|300526923|gb|EFK47992.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli MS 119-7]
gi|331073675|gb|EGI44996.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli H591]
gi|332102807|gb|EGJ06153.1| type III secretion apparatus protein EpaR [Shigella sp. D9]
Length = 255
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL---LNLNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPILA 236
>gi|83646010|ref|YP_434445.1| type III secretory pathway subunit EscT [Hahella chejuensis KCTC
2396]
gi|83634053|gb|ABC30020.1| Type III secretory pathway, component EscT [Hahella chejuensis KCTC
2396]
Length = 261
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 102/247 (41%), Gaps = 4/247 (1%)
Query: 2 TISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDL 60
+ F+ R+ + M+LP LS + +R A +FS++ P + +D
Sbjct: 3 IELISHTLFVFFMSSARMLAMFMMLPFLSKQSLGGAMIRNGVAASFSLITYPLVEHGLDA 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q + + +++ E+ +G G ++ + ++ G I G + +++
Sbjct: 63 QTL-DGLHLLLIIVKEVGIGLAMGFVLVMPFWAIESVGFFIDNQRGATMASALNPLSGSQ 121
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTT 178
+PL L+ + ++ + YAL KSY P+ + L + + F+ L T
Sbjct: 122 TSPLGILLTQSLVTLFFISGTFLLMLYALYKSYSVWPVFEFLPSFPVSGPAFFLAQLDTM 181
Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+ + L +P + + + L+++ PQ+ ++ ++ P +G LC+ ++
Sbjct: 182 MRLTVLLGAPVVIVMFLTEFGLALISRFAPQLNVFILAMPLKSAVGLALLCVYAGFVIRY 241
Query: 239 FSHSFLY 245
FS
Sbjct: 242 FSELLAD 248
>gi|120597287|ref|YP_961861.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1]
gi|120557380|gb|ABM23307.1| flagellar biosynthetic protein FliR [Shewanella sp. W3-18-1]
Length = 232
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 102/224 (45%), Gaps = 3/224 (1%)
Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83
M++P L +Y+P+ VR+ A++ + +L P L + + + L + +L +G +
Sbjct: 1 MIMPLLGNAYVPVMVRIFLALSIAALLAPMLPPVPPVDAISLASLF--LAIEQLLIGFML 58
Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143
L + + + G+++S +GL + ++ + ++ I G L ++ H
Sbjct: 59 ALFLTLLIHVMTMLGNIMSMQMGLAMAVMNDPANGDSSPIISEWFQIFGTLIFLALNGHL 118
Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203
+V S+ PIG + + V+ L F L L+ P + ++ NI+ G+L
Sbjct: 119 VAINIIVDSFRLWPIGHGIFELPLM-GLVSRLAWLFAASLMLAIPAVLAMLMVNITFGVL 177
Query: 204 NKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ P + I+ + P + +G L + LS+ I ++S L
Sbjct: 178 SRSAPSLNIFSLGFPMTMLMGLLCVFLSLSGIPSRYSDLCLDAL 221
>gi|229017054|ref|ZP_04173973.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH1273]
gi|229023235|ref|ZP_04179745.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH1272]
gi|228738029|gb|EEL88515.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH1272]
gi|228744227|gb|EEL94310.1| Type III secretion system inner membrane R protein [Bacillus cereus
AH1273]
Length = 253
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F + SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAATQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVVTILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|34498077|ref|NP_902292.1| surface presentation of antigens secretory protein [Chromobacterium
violaceum ATCC 12472]
gi|34103932|gb|AAQ60292.1| surface presentation of antigens; secretory proteins
[Chromobacterium violaceum ATCC 12472]
Length = 255
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + RV +LP L+ + + VR AM ++ L P + +
Sbjct: 11 GWVAAAAIGFARVAPVFFILPFLNGNTLTGMVRTSVAMLVALGLWPH---PPLAMHAMQA 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+M E +G + G L+ GS+I G L +S+ ++ + + + +
Sbjct: 68 WPLLALLMREATVGLLLGCLLAWPFWAFHAMGSIIDNQRGATLSSSIDPANGVDTSEMAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ + + + +SY + + + +++L + L+
Sbjct: 128 LLNLFAAAVYLQGGGMELMLDVMRQSYQLLDPLGDGLPP--LAPVLSLLNQVIAKSIVLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + ++ +GLL++ PQ+ + +S L + L ++
Sbjct: 186 SPVMATLLLSEAVLGLLSRFAPQMNAFAVSLTVKSAAALLIMLLYFAPVLP 236
>gi|302338095|ref|YP_003803301.1| flagellar biosynthetic protein FliR [Spirochaeta smaragdinae DSM
11293]
gi|301635280|gb|ADK80707.1| flagellar biosynthetic protein FliR [Spirochaeta smaragdinae DSM
11293]
Length = 266
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/238 (18%), Positives = 98/238 (41%), Gaps = 3/238 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L L+ R+ + + + P +S S +P VR A+ SI++ P++ Y+
Sbjct: 13 LLLLFARIFAMLAVAPVMSSSAVPGIVRAVLALLSSIIIYPWV-AESGYPIPEAALQYAM 71
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ E+ +G V G ++ V G S +G + + + ++
Sbjct: 72 LLLGEVLIGVVIGFMMTVVFTVFLVAGQFFSFQMGFGASEVYDPLAQVEIPLMGQFLNLV 131
Query: 132 GLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFGNIFSSF-VNMLQTTFMIMLRLSSPF 189
+L + D Y ++ S+ ++ L F++ V + F + +S P
Sbjct: 132 AMLVFLINDGLRKLFLYGVLGSFQSLRAWDLLERRQQFATLAVRSMVDLFRQAMIISFPI 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++++GLL K PQ+ + + P I + + +++ ++ F GF
Sbjct: 192 LGTMLLVSVALGLLAKAAPQMNLLMLGFPLKIAIAFFMMFVTMPFLMEAFGKMIDAGF 249
>gi|16802720|ref|NP_464205.1| flagellar biosynthesis protein FliR [Listeria monocytogenes EGD-e]
gi|224498761|ref|ZP_03667110.1| flagellar biosynthesis protein FliR [Listeria monocytogenes Finland
1988]
gi|224502017|ref|ZP_03670324.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL
R2-561]
gi|254829335|ref|ZP_05234022.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL
N3-165]
gi|254830331|ref|ZP_05234986.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 10403S]
gi|254900086|ref|ZP_05260010.1| flagellar biosynthesis protein FliR [Listeria monocytogenes J0161]
gi|254911361|ref|ZP_05261373.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254935688|ref|ZP_05267385.1| flagellar biosynthesis protein FliR [Listeria monocytogenes F6900]
gi|255028552|ref|ZP_05300503.1| flagellar biosynthesis protein FliR [Listeria monocytogenes LO28]
gi|284801008|ref|YP_003412873.1| flagellar biosynthesis protein FliR [Listeria monocytogenes
08-5578]
gi|284994150|ref|YP_003415918.1| flagellar biosynthesis protein FliR [Listeria monocytogenes
08-5923]
gi|16410067|emb|CAC98756.1| lmo0678 [Listeria monocytogenes EGD-e]
gi|258601747|gb|EEW15072.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL
N3-165]
gi|258608270|gb|EEW20878.1| flagellar biosynthesis protein FliR [Listeria monocytogenes F6900]
gi|284056570|gb|ADB67511.1| flagellar biosynthesis protein FliR [Listeria monocytogenes
08-5578]
gi|284059617|gb|ADB70556.1| flagellar biosynthesis protein FliR [Listeria monocytogenes
08-5923]
gi|293589297|gb|EFF97631.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 253
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ RV S + P L IP V++ F MA SI + +D+
Sbjct: 4 EFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVA----TWVDVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + Y L+KS+ L + L + ++
Sbjct: 120 ILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 239
>gi|47091641|ref|ZP_00229437.1| flagellar biosynthetic protein FliR [Listeria monocytogenes str. 4b
H7858]
gi|217965224|ref|YP_002350902.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|226223309|ref|YP_002757416.1| flagellar biosynthetic protein FliR [Listeria monocytogenes
Clip81459]
gi|254824042|ref|ZP_05229043.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL
J1-194]
gi|254853117|ref|ZP_05242465.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL
R2-503]
gi|254932042|ref|ZP_05265401.1| flagellar biosynthetic protein FliR [Listeria monocytogenes
HPB2262]
gi|254992441|ref|ZP_05274631.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL
J2-064]
gi|255521625|ref|ZP_05388862.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL
J1-175]
gi|300764489|ref|ZP_07074482.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL
N1-017]
gi|47019960|gb|EAL10697.1| flagellar biosynthetic protein FliR [Listeria monocytogenes str. 4b
H7858]
gi|217334494|gb|ACK40288.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|225875771|emb|CAS04474.1| Putative flagellar biosynthetic protein FliR [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258606468|gb|EEW19076.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL
R2-503]
gi|293583595|gb|EFF95627.1| flagellar biosynthetic protein FliR [Listeria monocytogenes
HPB2262]
gi|293593271|gb|EFG01032.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL
J1-194]
gi|300514843|gb|EFK41897.1| flagellar biosynthetic protein FliR [Listeria monocytogenes FSL
N1-017]
gi|307570217|emb|CAR83396.1| flagellar biosynthetic protein [Listeria monocytogenes L99]
gi|313620098|gb|EFR91603.1| flagellar biosynthesis protein FliR [Listeria innocua FSL S4-378]
gi|313624920|gb|EFR94828.1| flagellar biosynthesis protein FliR [Listeria innocua FSL J1-023]
gi|328467247|gb|EGF38327.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 1816]
gi|328475643|gb|EGF46392.1| flagellar biosynthesis protein FliR [Listeria monocytogenes 220]
gi|332311103|gb|EGJ24198.1| Flagellar biosynthetic protein FliR [Listeria monocytogenes str.
Scott A]
Length = 253
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ RV S + P L IP V++ F MA SI + +D+
Sbjct: 4 EFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVA----TGVDVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + Y L+KS+ L + L + ++
Sbjct: 120 ILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 239
>gi|89111154|dbj|BAE80244.1| HrcT [Acidovorax avenae subsp. avenae]
Length = 286
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 88/238 (36%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R + +++LP + + +VR + + L
Sbjct: 1 MLGLLALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVA--WGQPSGLLESTGPL 58
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ LV+ E +G + G + V + G +I G N TP+ +L
Sbjct: 59 VFIALVVKEALIGMLIGFAVSVVFWAAEGIGMLIDNQAGYNNIQQTNPLSGQQSTPVGNL 118
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + ++ +++ L SY P+ + + + F + + +L++
Sbjct: 119 LMQLAIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLKI 178
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ P L ++ ++ +GLL+K ++ ++ P L L L + + +Q
Sbjct: 179 AGPVLMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 236
>gi|167638815|ref|ZP_02397090.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0193]
gi|177650496|ref|ZP_02933463.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0174]
gi|254734623|ref|ZP_05192335.1| flagellar biosynthesis protein FliR [Bacillus anthracis str.
Western North America USA6153]
gi|167513279|gb|EDR88650.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0193]
gi|172083640|gb|EDT68700.1| flagellar biosynthetic protein FliR [Bacillus anthracis str. A0174]
Length = 253
Score = 97.6 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 96/233 (41%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S+ IP ++ F +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSVRSIPAMAKVTFGLALSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|253990106|ref|YP_003041462.1| flagellar biosynthesis protein FliR [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781556|emb|CAQ84719.1| flagellar biosynthetic protein flir [Photorhabdus asymbiotica]
Length = 260
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 97/242 (40%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ F + RV + P S +VR+ A+ +++L+P L Q +
Sbjct: 10 SQFVSEFFWPLVRVLALFSTAPLFSEKQATKKVRIGLAVMVTLLLMPNLQ---PAQIPIF 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+++ ++ +G GL +++ ++ G +I +GL+ T S L
Sbjct: 67 SVAAFWVIVQQILIGASLGLTMQIAFSAVRHAGEIIGLQMGLSFATFFDPSGGPNMPILA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ LL D H + L ++ IP+ F F+ + L
Sbjct: 127 RIFNLLTLLLFLAFDGHLWLLSILADTFQVIPVQPLQLNAQGFFLLAQSASMIFINGMML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P + + N+S+G+LN++ PQ+ I+ + P + G L L L I ++ F
Sbjct: 187 ALPLITLLLTLNLSLGILNRMTPQLSIFVVGFPLTLTTGILVLTLLIPMLAPFSERMFSE 246
Query: 246 GF 247
F
Sbjct: 247 LF 248
>gi|205352863|ref|YP_002226664.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205272644|emb|CAR37554.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|309243391|gb|ADO51967.1| SsaT [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|326627935|gb|EGE34278.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 259
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 81/206 (39%), Gaps = 1/206 (0%)
Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 36 SAILRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAV 95
Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154
G ++ T G + T + + L + ++ + L +SY
Sbjct: 96 DMAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQ 155
Query: 155 TIPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++
Sbjct: 156 YLPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVF 215
Query: 214 FISTPYLIGLGSLFLCLSIEIIVYQF 239
F+S P L L +S ++ +
Sbjct: 216 FLSMPLKSISVLLTLLISFPYALHHY 241
>gi|315453852|ref|YP_004074122.1| flagellar biosynthetic protein [Helicobacter felis ATCC 49179]
gi|315132904|emb|CBY83532.1| flagellar biosynthetic protein [Helicobacter felis ATCC 49179]
Length = 255
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 97/239 (40%), Gaps = 3/239 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ +L+ R+ + P + +P+ VR ++V P + +N
Sbjct: 13 ITGFWLLFVRIAGVLAFFPFFDNNLVPLSVRGALGFFLTLVFYPTIP---HAPLHLNTEG 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ ++ EL LG + + L F IS ++GL + ++ + + ++
Sbjct: 70 FLIALLSELLLGLCASFFLHLVFSTLAFATDTISFSMGLTMASAYDPISGAQKAIVGQVV 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ +L + HH + + S +P+G + ++ + V F I ++ P
Sbjct: 130 LLLAILIMLQTSIHHFIILWVQHSLAKVPLGSFVFSADVVKASVKAFAYLFSIGFSMAFP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L ++ ++ G++ K PQ + I P I + + L + + ++++F + L F
Sbjct: 190 ILAIIMLSDVVFGMIMKTHPQFNLLAIGFPLKIAIALMGLIMILGSMMHRFKDTLLQAF 248
>gi|47095243|ref|ZP_00232854.1| flagellar biosynthetic protein FliR [Listeria monocytogenes str.
1/2a F6854]
gi|47016314|gb|EAL07236.1| flagellar biosynthetic protein FliR [Listeria monocytogenes str.
1/2a F6854]
Length = 244
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 83/234 (35%), Gaps = 4/234 (1%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
++ RV S + P L IP V++ F MA SI + +D+
Sbjct: 1 MIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVA----TWVDVSGITTLPDLLLR 56
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
V E+ G L+ + + + G +I +G + + S + +++
Sbjct: 57 VTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILDTFF 116
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
++ + + Y L+KS+ L + L + ++ P +
Sbjct: 117 VVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIALPIMGS 176
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 177 IFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 230
>gi|193063522|ref|ZP_03044611.1| type III secretion apparatus protein EpaR [Escherichia coli E22]
gi|218555410|ref|YP_002388323.1| putative Type III secretion protein EpaR [Escherichia coli IAI1]
gi|260845523|ref|YP_003223301.1| type III secretion protein EpaR [Escherichia coli O103:H2 str.
12009]
gi|192930799|gb|EDV83404.1| type III secretion apparatus protein EpaR [Escherichia coli E22]
gi|218362178|emb|CAQ99794.1| putative Type III secretion protein EpaR [Escherichia coli IAI1]
gi|257760670|dbj|BAI32167.1| type III secretion protein EpaR [Escherichia coli O103:H2 str.
12009]
Length = 255
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL---LNLNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALFAAREIIIGLFIACLLASPFWMFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPILA 236
>gi|225871938|ref|YP_002753392.1| flagellar biosynthetic protein FliR [Acidobacterium capsulatum ATCC
51196]
gi|225793704|gb|ACO33794.1| flagellar biosynthetic protein FliR [Acidobacterium capsulatum ATCC
51196]
Length = 260
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 104/241 (43%), Gaps = 4/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L++ RV ++ P S + IP QV+ F +A ++ L P + +
Sbjct: 10 QYLSALVLVMLRVSGLMLFAPVFSSTAIPPQVKAVFTLAVTVCLAPVVAGLPHADARLGP 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ EL +G + G+ +R+ L F G ++ A +L + + + +
Sbjct: 70 ----QEILSELAVGLLFGICLRMLMEMLTFAGDLLGIAFSFSLVNLLDPNAPVQVPLMGQ 125
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++G L L + AL++++ +P+G + + M F+ L+L+
Sbjct: 126 FFSLLGTLVLLSTGLDRTMIAALMRTFAVVPVGSFVLSAKTAWAVAEMGTGLFLAALQLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+P + ++ + ++GL +L PQ+P ++ P LG + L S+ + F
Sbjct: 186 APVMVATMLVDFAVGLAARLSPQLPALSLTVPVKTMLGFVVLIGSLALWPEFIEARFDAL 245
Query: 247 F 247
Sbjct: 246 L 246
>gi|94495441|ref|ZP_01302021.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
gi|94424829|gb|EAT09850.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
Length = 260
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/242 (17%), Positives = 94/242 (38%), Gaps = 1/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + + + R G+ + P +P+Q+RL A+A + L + + +
Sbjct: 10 ETQLWVWLIAMIRPGAAFIAAPVFGAPAVPLQLRLILALALGLAALNSVTIQLPPDGVAS 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+V E+ G G +++ G I A+GLN + S L
Sbjct: 70 -FQGVLMVAGEVLAGLAMGFAVQIGYAAAFVAGETIGNAMGLNFAAMVDPSSGQGTQVLG 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ I+ L +D H + +V+SY IP + + + + + + +
Sbjct: 129 QFLSILATFLLLGMDGHLLLASFVVQSYVAIPPSSGILANDTIWRLIEFGGSLLGMGVTV 188
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ P F ++ I +G+L++ P + ++ + P + G + L ++ I+ + +
Sbjct: 189 ALPVGFALVLVQIVMGILSRAAPSLNLFAVGMPMAMMAGLILLAIAAPIMAEGMTAALKA 248
Query: 246 GF 247
G
Sbjct: 249 GL 250
>gi|326794360|ref|YP_004312180.1| type III secretion protein SpaR/YscT/HrcT [Marinomonas mediterranea
MMB-1]
gi|326545124|gb|ADZ90344.1| type III secretion protein SpaR/YscT/HrcT [Marinomonas mediterranea
MMB-1]
Length = 264
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 91/233 (39%), Gaps = 4/233 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++S+ L + R+ C++L+P S + +R + ++++ P + + + + +
Sbjct: 12 WVLSISLGMARLYPCLLLIPLFSFKELKGMLRYALVVVLALMVAPGIKEALPHDH--SWF 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + E LG + G+++ + + G + G + + S TPL L
Sbjct: 70 TLLTLYLKETALGMLLGIILAIPFWLFESVGGLFDNQRGALMGGQLNPSLGQDFTPLGFL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFMIMLRL 185
++ + + + SY P F ++++L+ F ++
Sbjct: 130 FKQTLIVLMITTGSFEAMLQVIWDSYVIWPPTVWYPTPTPEGFEIYLSLLRDAFTDLILY 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++P + + + +L+ PQ+ + ++ P G FL I + Y
Sbjct: 190 AAPLVALLLFVEFGVSVLSLYSPQLQAFVLAMPIKCLAGLGFLIFYIPTLFYL 242
>gi|304311651|ref|YP_003811249.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
gi|301797384|emb|CBL45604.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
Length = 263
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 3/233 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++ L + R+G+ ++LP S +P VR +A +I +LP + + +
Sbjct: 14 FIAIALSLPRLGAAFLILPLFQQSTVPATVRNSLIVALAISVLPAAISSTKAADLM-LLD 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ +V+ E +G V G L L GS+I G ++ + + + L
Sbjct: 73 WPIIVLKECLIGAVIGFLFGSVFWALGVAGSMIDMQSGGSMASIVDPIQGHQTALIGQLF 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLS 186
L ++ SY PI L F+ L L+
Sbjct: 133 SRFASWLLMASGGFLVFMELVLSSYRIWPIADALPQLSIESSDLFIAEFGYILKTGLILA 192
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
P + + + GL+N+ + ++ IS+ G L + +
Sbjct: 193 GPAIVVLMAIDAGFGLMNRFAQNLNLFSISSSVKYFAGIGVTFLVLTLYTEFV 245
>gi|218699489|ref|YP_002407118.1| flagellar export pore protein [Escherichia coli IAI39]
gi|218369475|emb|CAR17240.1| flagellar export pore protein [Escherichia coli IAI39]
Length = 239
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 3/229 (1%)
Query: 19 VGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+ + I P LS +P +V+L AM + + P L V + L + ++
Sbjct: 1 MLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSFFALWLAVQQIL 57
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
+G G ++ ++ G +I +GL+ T + S L L ++ ++ LL
Sbjct: 58 IGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPSSHLNMPVLARIMDMLALLLFLT 117
Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198
+ H + LV ++ T PIG E N F + F+ L L+ P + + N+
Sbjct: 118 FNGHLWLISLLVDTFHTQPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNL 177
Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 178 ALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 226
>gi|83718195|ref|YP_438367.1| flagellar biosynthetic protein FliR [Burkholderia thailandensis
E264]
gi|167614813|ref|ZP_02383448.1| flagellar biosynthetic protein FliR, putative [Burkholderia
thailandensis Bt4]
gi|257141398|ref|ZP_05589660.1| flagellar biosynthetic protein FliR, putative [Burkholderia
thailandensis E264]
gi|83652020|gb|ABC36084.1| flagellar biosynthetic protein FliR, putative [Burkholderia
thailandensis E264]
Length = 258
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 95/236 (40%), Gaps = 4/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + CR+ + + P + S +P ++R+ A+ +++ LP + + V
Sbjct: 10 EWLARAWWPFCRILAALSAAPFIGESTVPARMRVMIALLLALIALPAVD---PVAIPVFS 66
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + + ++ +G + G+L G ++++ +GL + + ++
Sbjct: 67 ARGALVAAEQILIGLLFGMLFHFMQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSG 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + +L + ID H V L S+ P+G ++ ++ F L+
Sbjct: 127 FMLVTSILLFFAIDAHLVVVQVLYTSFRVWPVGSPIDLPSL-KPLAYQAAWLFSTTTLLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+P +F +V I L++ P I ++ + + G L L ++ + ++
Sbjct: 186 APLVFATVVLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMVKGLPAHYASM 241
>gi|313905146|ref|ZP_07838515.1| type III secretion system inner membrane R protein [Eubacterium
cellulosolvens 6]
gi|313470049|gb|EFR65382.1| type III secretion system inner membrane R protein [Eubacterium
cellulosolvens 6]
Length = 250
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 99/240 (41%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ LIV R+ I+L P S IP V+ AFS++L + + +
Sbjct: 1 MVILFALIVMRMTGAIVLNPMTGRSEIPALVKGALTFAFSLMLFMWTGGRLAVA-PKTWF 59
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ + + EL LG G + + ++F +++ +GL++ T + L
Sbjct: 60 EFASMALRELLLGFTIGFGMELSMTVIRFGTAIVDYMMGLSMAQVYDPRSGAQMTVSSGL 119
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+L V D H + F + + IP G + + ++ L+ +
Sbjct: 120 YTTFMMLVFLVNDGHLRFFQLVFGTADKIPFGAVHFTVELPQFMMKYYCECIIMGLQFAM 179
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++ ++IG++ ++VPQI I+ I+ I +G + L L + + F
Sbjct: 180 PIIVIELLAEVAIGIMMRVVPQINIFAINFQVKIIVGLVMLFLLFAPLSDMIDRVWRDMF 239
>gi|322615095|gb|EFY12018.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619936|gb|EFY16809.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622248|gb|EFY19093.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627770|gb|EFY24560.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632885|gb|EFY29629.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636624|gb|EFY33327.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641183|gb|EFY37825.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644882|gb|EFY41415.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650282|gb|EFY46696.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655855|gb|EFY52157.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660181|gb|EFY56420.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665253|gb|EFY61441.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669510|gb|EFY65658.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673436|gb|EFY69538.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677364|gb|EFY73428.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679973|gb|EFY76012.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687445|gb|EFY83417.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194102|gb|EFZ79301.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198583|gb|EFZ83684.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202909|gb|EFZ87944.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208629|gb|EFZ93567.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211165|gb|EFZ96012.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217606|gb|EGA02321.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323218955|gb|EGA03465.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323229408|gb|EGA13531.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232631|gb|EGA16727.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240331|gb|EGA24375.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242680|gb|EGA26701.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245891|gb|EGA29879.1| type III secretion system protein SsaT [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252455|gb|EGA36302.1| type III secretion system protein SsaT [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256474|gb|EGA40207.1| type III secretion system protein SsaT [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260037|gb|EGA43662.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267200|gb|EGA50685.1| type III secretion system protein SsaT [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271477|gb|EGA54898.1| type III secretion system protein SsaT [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 259
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 36 MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQ 95
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIIMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVD 96
Query: 96 FTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155
G ++ T G + T + + L + ++ + L +SY
Sbjct: 97 MAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156
Query: 156 IPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F
Sbjct: 157 LPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFF 216
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQF 239
S P L L L +S ++ +
Sbjct: 217 FSMPLKSILVLLTLLISFPYALHHY 241
>gi|315281329|ref|ZP_07869977.1| flagellar biosynthesis protein FliR [Listeria marthii FSL S4-120]
gi|313615027|gb|EFR88523.1| flagellar biosynthesis protein FliR [Listeria marthii FSL S4-120]
Length = 253
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ RV S + P L IP V++ F MA SI + +D+
Sbjct: 4 EFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVA----TWVDVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEMIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + Y L+KS+ L + L + ++
Sbjct: 120 ILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 239
>gi|89111187|dbj|BAE80276.1| HrcT [Acidovorax avenae subsp. avenae]
Length = 282
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 89/238 (37%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R + +++LP + + +VR + + L +
Sbjct: 1 MLGLLALCCARFYAAMLVLPATNDQLLLGRVRNGTVLLLGAFVA--WGQPSGLLESTSPL 58
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ LV+ E +G + G + V + G +I G N TP+ +L
Sbjct: 59 VFIALVVKEALIGMLIGFAVSVVFWAAEGIGMLIDNQAGYNNIQQTNPLSGQQSTPVGNL 118
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + ++ +++ L SY P+ + + + F + + +L++
Sbjct: 119 LMQLAIVGFYMLGGMMVFVGLLFDSYDWWPLTGMMPSWPVLAERFFPDEVAGYAQTVLKI 178
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ P L ++ ++ +GLL+K ++ ++ P L L L + + +Q
Sbjct: 179 AGPVLMTLMLIDLGMGLLSKAAEKLEPGSLAQPIKGAATMLLLVLLVGVFFHQVREQL 236
>gi|168233616|ref|ZP_02658674.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194471729|ref|ZP_03077713.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194458093|gb|EDX46932.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|205332340|gb|EDZ19104.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 259
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 36 MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQ 95
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVD 96
Query: 96 FTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155
G ++ T G + T + + L + ++ + L +SY
Sbjct: 97 MAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156
Query: 156 IPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F
Sbjct: 157 LPPGRTLLFDRQFLKYIQAEWRTLYQLCVSFSVPAIICMVLADLALGLLNRSAQQLNVFF 216
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQF 239
S P L L L +S ++ +
Sbjct: 217 FSMPLKSILVLLTLLISFPYALHHY 241
>gi|157158728|ref|YP_001464195.1| type III secretion apparatus protein EpaR [Escherichia coli
E24377A]
gi|157080758|gb|ABV20466.1| type III secretion apparatus protein EpaR [Escherichia coli
E24377A]
Length = 255
Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 74/230 (32%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL---LNLNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +S+ P G + + + +S
Sbjct: 129 FNLFSAAVYLTKGGMNFILETLWQSHNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + + +GLL Q+ + IS L L L + I+
Sbjct: 187 PVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPILA 236
>gi|167551610|ref|ZP_02345364.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|194442971|ref|YP_002040672.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194401634|gb|ACF61856.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|205323640|gb|EDZ11479.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 259
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 1/206 (0%)
Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 36 SAILRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAV 95
Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154
G ++ T G + T + + L + ++ + L +SY
Sbjct: 96 DMAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQ 155
Query: 155 TIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++
Sbjct: 156 YLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVF 215
Query: 214 FISTPYLIGLGSLFLCLSIEIIVYQF 239
F S P L L L +S ++ +
Sbjct: 216 FFSMPLKSILVLLTLLISFPYALHHY 241
>gi|329943278|ref|ZP_08292052.1| bacterial export s, 1 family protein [Chlamydophila psittaci Cal10]
gi|332287856|ref|YP_004422757.1| putative type III secretion inner membrane protein [Chlamydophila
psittaci 6BC]
gi|313848428|emb|CBY17432.1| putative type III export protein [Chlamydophila psittaci RD1]
gi|325507239|gb|ADZ18877.1| putative type III secretion inner membrane protein [Chlamydophila
psittaci 6BC]
gi|328814825|gb|EGF84815.1| bacterial export s, 1 family protein [Chlamydophila psittaci Cal10]
gi|328915118|gb|AEB55951.1| flagellar biosynthetic protein FliR, putative [Chlamydophila
psittaci 6BC]
Length = 289
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/234 (19%), Positives = 106/234 (45%), Gaps = 7/234 (2%)
Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80
++P L P +++ A+++ ++ P + + + N+++ + L++ E+ +G
Sbjct: 41 PIFAIVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHIANYLDDDMFYILIVKEICIG 100
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
+ G ++ Q GS I+ G+ L+ + + +P + W+
Sbjct: 101 TLIGFILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLS 160
Query: 140 DFHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
H V L++S IPI + L I+ + + M Q ++ ++LS+P
Sbjct: 161 GGHRIVLTILLQSLEVIPIHKFLPMEMMSLDAPIWVALIKMCQLCLIMTIQLSAPAAVAM 220
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + L F
Sbjct: 221 LMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDYFTLAWF 274
>gi|163852024|ref|YP_001640067.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens
PA1]
gi|240139291|ref|YP_002963766.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens
AM1]
gi|163663629|gb|ABY30996.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens
PA1]
gi|240009263|gb|ACS40489.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens
AM1]
Length = 258
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 123/242 (50%), Gaps = 1/242 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + + RVG+ +ML+PGL I ++RL A+ ++VL P + +
Sbjct: 5 LDLLLPGLAAAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPT 64
Query: 61 -QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ +
Sbjct: 65 GNAALAAPSLIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGG 124
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ + + + ++G+ + D HH A+ +SY +P + ++ +F
Sbjct: 125 QQAAIGNFLAMLGVTLILATDLHHVALEAIGRSYVLLPPSGVPAMADAAKLALDAFSRSF 184
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ +R+S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F
Sbjct: 185 ALAVRISGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLF 244
Query: 240 SH 241
Sbjct: 245 LD 246
>gi|16764771|ref|NP_460386.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167995055|ref|ZP_02576145.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|3024667|sp|P96068|SSAT_SALTY RecName: Full=Secretion system apparatus protein ssaT
gi|1695195|emb|CAA68201.1| secretion system apparatus, SsaT [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16419942|gb|AAL20345.1| secretion system apparatus protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205327199|gb|EDZ13963.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|261246627|emb|CBG24437.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993310|gb|ACY88195.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157956|emb|CBW17451.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912406|dbj|BAJ36380.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|323129693|gb|ADX17123.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|332988308|gb|AEF07291.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 259
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 80/205 (39%), Gaps = 1/205 (0%)
Query: 36 MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQ 95
+R M+ + +LP ++ + + + LV E+ +G G V +
Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVD 96
Query: 96 FTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155
G ++ T G + T + + L + ++ + L +SY
Sbjct: 97 MAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156
Query: 156 IPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F
Sbjct: 157 LPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFF 216
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQF 239
S P L L L +S ++ +
Sbjct: 217 FSMPLKSILVLLTLLISFPYALHHY 241
>gi|62180012|ref|YP_216429.1| secretion system apparatus SsaT [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62127645|gb|AAX65348.1| Secretion system apparatus SsaT [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322714479|gb|EFZ06050.1| secretion system apparatus SsaT [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 259
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Query: 36 MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQ 95
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVD 96
Query: 96 FTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155
G ++ T G + T + + L + ++ + L +SY
Sbjct: 97 MAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156
Query: 156 IPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F
Sbjct: 157 LPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFF 216
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQF 239
+S P L L L +S ++ +
Sbjct: 217 LSMPLKSILVLLTLLISFPYALHHY 241
>gi|312602775|ref|YP_004022620.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica
HKI 454]
gi|306431578|emb|CBK52130.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica
HKI 454]
gi|312170089|emb|CBW77101.1| type III secretion apparatus protein SctT [Burkholderia rhizoxinica
HKI 454]
Length = 270
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 83/242 (34%), Gaps = 4/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L L R + P + + R + FS + L ++
Sbjct: 17 GYLAMLTLCSERAFILFFMFPPTADGVLQGVARNGVVLLFSSFIA--YGQPASLFESMSG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + + E +G G + + G+ I G N S TP +
Sbjct: 75 LMFVETFVREAIIGLALGFSASIVFWVAESAGTYIDDLTGYNNIQITNPVRSEQNTPTGT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLR 184
L+ I +A W + + L SY P+ + S ++ T + +
Sbjct: 135 LLMQIATVAFWTLGGMPALLGVLYDSYNWWPLTSRTPVAENILQSFVLHQTDTLMQMTAK 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L++P +F ++ +++ G + K ++ + +S P L L L L + I V Q +
Sbjct: 195 LATPIMFILLLVDLAFGFVAKSAQKLEVMQLSQPVKGALTVLILALFVGIFVEQVRGQLV 254
Query: 245 YG 246
Sbjct: 255 LA 256
>gi|168240934|ref|ZP_02665866.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168263747|ref|ZP_02685720.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|194451950|ref|YP_002045424.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197265421|ref|ZP_03165495.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|200390667|ref|ZP_03217278.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|207857073|ref|YP_002243724.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|194410254|gb|ACF70473.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197243676|gb|EDY26296.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|199603112|gb|EDZ01658.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205339098|gb|EDZ25862.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205347613|gb|EDZ34244.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206708876|emb|CAR33206.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
Length = 259
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 1/206 (0%)
Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 36 SAILRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAV 95
Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154
G ++ T G + T + + L + ++ + L +SY
Sbjct: 96 DMAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQ 155
Query: 155 TIPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++
Sbjct: 156 YLPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVF 215
Query: 214 FISTPYLIGLGSLFLCLSIEIIVYQF 239
F S P L L L +S ++ +
Sbjct: 216 FFSMPLKSILVLLTLLISFPYALHHY 241
>gi|198243734|ref|YP_002215711.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|197938250|gb|ACH75583.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|326623458|gb|EGE29803.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 259
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 36 MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQ 95
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVD 96
Query: 96 FTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155
G ++ T G + T + + L + ++ + L +SY
Sbjct: 97 MAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156
Query: 156 IPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F
Sbjct: 157 LPPGRTLLFDRQFLKYIQAEWRTLYQLCVSFSLPAIICMVLADLALGLLNRSAQQLNVFF 216
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQF 239
S P L L L +S ++ +
Sbjct: 217 FSMPLKSILVLLTLLISFPYALHHY 241
>gi|134095089|ref|YP_001100164.1| flagellar biosynthetic protein fliR [Herminiimonas arsenicoxydans]
Length = 222
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/208 (17%), Positives = 84/208 (40%), Gaps = 2/208 (0%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98
++ + ++++ P + + + L +G G +R+ G++ G
Sbjct: 2 KISLGIMLALIIAPTVPALPAMDPMSPAGLLILVQQ--LLIGLTMGFAMRIVFAGVEMAG 59
Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158
+ +GL + + ++ + ++ L+ + H V L +S+ +PI
Sbjct: 60 EITGMTMGLGFASFFDPQTRARSSAISQFLALLILMIYLSTNLHLVVLSTLAQSFELLPI 119
Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218
F V F ++LS P + ++ NI++G+L + PQ+ I+ I P
Sbjct: 120 SSNFVSTEGFFQVVKWGGRIFSAGVQLSLPMVAALLMTNIALGILTRAAPQLNIFGIGFP 179
Query: 219 YLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
IG+G + + + + ++ F + G
Sbjct: 180 ITIGVGFIMIAIVLPYLMNPFINLMQEG 207
>gi|16760490|ref|NP_456107.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29141750|ref|NP_805092.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213426014|ref|ZP_03358764.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213581365|ref|ZP_03363191.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213613055|ref|ZP_03370881.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647289|ref|ZP_03377342.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213854182|ref|ZP_03382714.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289805083|ref|ZP_06535712.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289827204|ref|ZP_06545927.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25352861|pir||AG0696 probable type III secretion protein ssaT [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502786|emb|CAD01944.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137378|gb|AAO68941.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 259
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 36 MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQ 95
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVD 96
Query: 96 FTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155
G ++ T G + T + + L + ++ + L +SY
Sbjct: 97 MAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156
Query: 156 IPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F
Sbjct: 157 LPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFF 216
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQF 239
S P L L L +S ++ +
Sbjct: 217 FSMPLKSILVLLTLLISFPYALHHY 241
>gi|254499124|ref|ZP_05111814.1| putative flagellar biosynthesis pathway, component FliR [Legionella
drancourtii LLAP12]
gi|254351663|gb|EET10508.1| putative flagellar biosynthesis pathway, component FliR [Legionella
drancourtii LLAP12]
Length = 249
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 96/240 (40%), Gaps = 5/240 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ SLF I R+G+ ++ P ++ +P+ RL S++L ++ +L N
Sbjct: 7 WLTSLFFITIRLGTVLLFTPIQAIRQLPIHARLILIFTLSMLLANYVPQKSELSNNAILF 66
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
E G + + Q G +I + G N S+ E + L
Sbjct: 67 GGLA----EFANGLILATSLYAAFAIFQIAGQLIDSETGYNATAVFNPSEHSQEPLTSHL 122
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ +L + +D H +F L S+ IP G F F+ + F + ++S
Sbjct: 123 LSMLAVLFFFSLDGHQWLFKGLAYSFIIIPPGTLSLFAG-FTPVIKQFSFMFSMAFMIAS 181
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + ++ L+ + +PQ+ YF++ P I G L + + I + F F
Sbjct: 182 PIIIALLALDLCGALITRNMPQVSTYFLTLPIKILFGLFLLFMMLNYINPLTTTVFSQCF 241
>gi|46445834|ref|YP_007199.1| putative type III secretion inner membrane protein SctT [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399475|emb|CAF22924.1| putative type III secretion inner membrane protein SctT [Candidatus
Protochlamydia amoebophila UWE25]
Length = 280
Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 7/231 (3%)
Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77
R+ I L P +P V++ A++F ++ LP L + EL
Sbjct: 32 RMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQL-IFVTTTPITFNLLLVLYFFKEL 90
Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137
F+G + G LI + + +Q G +I G + + +PL +L ++ + +
Sbjct: 91 FVGLLLGYLISIPFIIVQNCGILIDHQRGGSSLMINDPTLQNQSSPLGTLFNLVLIYLFF 150
Query: 138 VIDFHHQVFYALVKSYGTIPIGQEL------NFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+ID + + +SY +P + L NI + ++ ++ +L++P L
Sbjct: 151 MIDGPFMILDIISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGKVMILSTQLAAPALI 210
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++ + +G+ N+L PQ+ I F+ P L + ++ + Q
Sbjct: 211 MILMTDFFLGIANRLAPQVQITFLGMPLKSLLALAIVFFGWQLFLKQIVDE 261
>gi|328948398|ref|YP_004365735.1| flagellar biosynthetic protein FliR [Treponema succinifaciens DSM
2489]
gi|328448722|gb|AEB14438.1| flagellar biosynthetic protein FliR [Treponema succinifaciens DSM
2489]
Length = 273
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 83/248 (33%), Gaps = 11/248 (4%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL---------WDTIDLQN 62
+ R + IM LP S +P ++ A + + P + +
Sbjct: 12 FLFVAVRCFATIMTLPLFSSRTVPRTAKIALAGYMAFFIFPQISLADGIFSSYKNYISPE 71
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
Y L+ E +G + G +++ G + +GL+ +
Sbjct: 72 GNFSLEYILLLAGEAMIGIILGFFVQIIFASFSTAGQFFAFQMGLSASEVYDSLSQVENP 131
Query: 123 PLNSLIGIIGLLALWVID-FHHQVFYALVKSYGTIPIGQELNFGNIF-SSFVNMLQTTFM 180
+ + +L + + + +S+ I ++ F + L F
Sbjct: 132 LMGQFFNFMAMLVFLQNNWLQMLLLKGMSESFKVISAISIVDNSRFFAEFMMKSLTLLFK 191
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L ++ P + + N+++G+L+K PQ+ + P L+ + + + + F
Sbjct: 192 DALIIALPVMASLFLINVTVGILSKAAPQMNLLSEGFPVLMLTAYFLIFVLVPQFIEFFE 251
Query: 241 HSFLYGFF 248
F G F
Sbjct: 252 GCFKGGLF 259
>gi|289433956|ref|YP_003463828.1| flagellar biosynthetic protein FliR [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170200|emb|CBH26740.1| flagellar biosynthetic protein FliR [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|313639093|gb|EFS04069.1| flagellar biosynthesis protein FliR [Listeria seeligeri FSL S4-171]
Length = 253
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 89/240 (37%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ CR+ S + P L +IP V++ F MA SI + + D+
Sbjct: 4 EFFLAVVIVFCRIASFLFFFPLLKGRHIPNSVKVIFGMAISIPVATVV----DVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + + L+KS+ L F+ L + ++
Sbjct: 120 ILDTFFVVIFLSLQGLDYLIFYLMKSFEFTASVSILFEKGFIDLFLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 239
>gi|254561747|ref|YP_003068842.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens
DM4]
gi|254269025|emb|CAX24986.1| flagellar biosynthetic protein FliR [Methylobacterium extorquens
DM4]
Length = 258
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/242 (23%), Positives = 122/242 (50%), Gaps = 1/242 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + + RVG+ +ML+PGL I ++RL A+ ++VL P + +
Sbjct: 5 LDLLLPGLAAAFLITFARVGTLMMLMPGLGEQLIASRLRLALALLVTLVLFPTVRPMLPT 64
Query: 61 -QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ L++ E+ +G + GL +R+ LQ G VIS +GL+ ++ +
Sbjct: 65 GNAALAAPSLIGLLIGEILIGLMLGLCVRMIVAALQTAGVVISQQLGLSYAMTVDPTMGG 124
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ + + + ++G+ + D HH A+ +SY +P + + +F
Sbjct: 125 QQAAIGNFLAMLGVTLILATDLHHVALEAIGRSYLLLPPSGVPAMADAAKLALAAFSRSF 184
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ +R+S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + L ++ +I+ F
Sbjct: 185 ALAVRISGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVIIGMMLLVGALGLIMGLF 244
Query: 240 SH 241
Sbjct: 245 LD 246
>gi|123443725|ref|YP_001007696.1| putative type III secretion apparatus protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|8996031|gb|AAF82330.1|AF005744_9 YsaT [Yersinia enterocolitica]
gi|15088604|gb|AAK84115.1|AF369954_13 YsaT [Yersinia enterocolitica]
gi|122090686|emb|CAL13562.1| putative type III secretion apparatus protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 266
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 92/233 (39%), Gaps = 5/233 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTID 59
+ + + +M+L L R+ LP LS + ++ C A+ ++ + PF
Sbjct: 12 LYSTFQTGLMTLALAWARIAPVFFFLPFLSSKLLNSGMIKNCVAVFLALGMWPFFSTY-- 69
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ ++++ EL +G V ++ + L G +I G + ++ ++ +
Sbjct: 70 -ELNWEETSLGEMILYELAIGLVLAFILSLPFLIANIIGELIDNQRGATISDTIDPANGV 128
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ ++ L+ I ++ +Q+ +SY +P + + L
Sbjct: 129 ESSEMSVLVSHIVVMIFLTQGGMYQLAQTFAESYRLLPFAAGFSHFDSLP-LGRWLNQLV 187
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
+ + L++P L + +++GL ++ PQ+ + +S + + L
Sbjct: 188 VQAIVLAAPILVTLFITEVALGLYSRFCPQLNAFSLSLTIKSAIAFMVFLLYF 240
>gi|266621913|ref|ZP_06114848.1| putative flagellar protein [Clostridium hathewayi DSM 13479]
gi|288866386|gb|EFC98684.1| putative flagellar protein [Clostridium hathewayi DSM 13479]
Length = 260
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 1/247 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M L+ R+G I + P + IP V+ + S+V+ P
Sbjct: 1 MDSGVLEYFDVFLLVFARMGGLIFVHPVFARRGIPAMVKTGLVLTLSLVIAPTAVQGSAA 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ ++ +M E+ +G V G + +++ + G ++ T GL++ M + +
Sbjct: 61 IQAYSTFQMAEALMREVIMGLVIGSVFQLFFYMIYAAGDLMDTVFGLSMGKIMDPAGGVQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTF 179
L I + L + H +Y IP+G L +I V++ + F
Sbjct: 121 TAILGQFIHVFFFLYFFATGCHLLTVKLFAYTYEVIPVGAARLVTQDIAWYLVSIFGSVF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+++++L+ PF+ V +S+G+L KL+PQI ++ I+ I LG L + L I
Sbjct: 181 LMVIKLALPFVAAEFVLEVSMGVLMKLIPQIHVFVINIQSKILLGILLMMLFARPIGAFI 240
Query: 240 SHSFLYG 246
F
Sbjct: 241 DSYFGMM 247
>gi|325527470|gb|EGD04804.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp. TJI49]
Length = 269
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L ++ R+ + ++P + + VR A+ + + P +
Sbjct: 13 GMLRPLLYVMPRLLPIMFVVPVFNEQIVTGLVRNGIAVVIAAFVAPAIDAAQVAALP--F 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 71 LMWCVLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P ++ + IGL+ + VPQ+ I+ + P L L + L + ++
Sbjct: 191 LAAPVTIVLVLVELGIGLVGRAVPQLNIFVFAQPVKSALAVLMMALFLPVVYASLHALL 249
>gi|157738151|ref|YP_001490835.1| flagellar biosynthetic protein FliR [Arcobacter butzleri RM4018]
gi|157700005|gb|ABV68165.1| flagellar biosynthetic protein FliR [Arcobacter butzleri RM4018]
Length = 249
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 106/248 (42%), Gaps = 5/248 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+++ E + L++ R+ + ++ +P + I + VR+ FA SI + PF+ D+
Sbjct: 5 LSLLNEQTVYQFLLLLARILAFVVFMPVFGHTAINVTVRIAFAFYLSIFIYPFV----DI 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+N+ + ++ E+ LG V +L+ + ++ G + + L++ + +
Sbjct: 61 VTSINQNNFIISLISEITLGLVAAMLVNIIFSAVRIIGEFVEYSTALSMAMMFDPTTNSQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTF 179
E + L+ I L+ + + L KS+ I +G + + ++ ++ F
Sbjct: 121 EGLVAKLLFWISLMLFFQTGMYEMTLVILAKSFTMIHLGSFNIFSYDGIQLAIDEIKRMF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P F + ++ G K +P + I+ L +FL L +EI F
Sbjct: 181 SFAFAFALPLFFIGFIMDVYYGYGTKSMPAFSPFIITFQLKFALIFIFLILGMEIFADTF 240
Query: 240 SHSFLYGF 247
++ F+ F
Sbjct: 241 TNYFINKF 248
>gi|229102367|ref|ZP_04233075.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock3-28]
gi|228681014|gb|EEL35183.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock3-28]
Length = 253
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F + SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 TAYAATQIVIGLSLAKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|56413608|ref|YP_150683.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|168463169|ref|ZP_02697100.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197362532|ref|YP_002142169.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56127865|gb|AAV77371.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|195634372|gb|EDX52724.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197094009|emb|CAR59505.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 259
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 1/206 (0%)
Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 36 SAILRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAV 95
Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154
G ++ T G + T + + L + ++ + L +SY
Sbjct: 96 DMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGVEFILNILYESYQ 155
Query: 155 TIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++
Sbjct: 156 YLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVF 215
Query: 214 FISTPYLIGLGSLFLCLSIEIIVYQF 239
F S P L L L +S ++ +
Sbjct: 216 FFSMPLKSILVLLTLLISFPYALHHY 241
>gi|229096253|ref|ZP_04227226.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock3-29]
gi|229115208|ref|ZP_04244618.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock1-3]
gi|228668348|gb|EEL23780.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock1-3]
gi|228687213|gb|EEL41118.1| Type III secretion system inner membrane R protein [Bacillus cereus
Rock3-29]
Length = 253
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F + SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ +G ++ + + G ++ IGL+ + ++ T L+++
Sbjct: 63 AAYAATQIVIGLSLAKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
I L+ + + ++KS+ +L + S + L + ++ P
Sbjct: 123 IFFLIIFISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + N + L+ K PQ+ I+ + I G LF+ +S+ ++ Y F +
Sbjct: 183 MGSLFIINFVLILIAKNAPQLNIFMNAFVIKITCGILFIAMSVPMLGYVFKNM 235
>gi|283782109|ref|YP_003372864.1| type III secretion system inner membrane R protein [Pirellula
staleyi DSM 6068]
gi|283440562|gb|ADB19004.1| type III secretion system inner membrane R protein [Pirellula
staleyi DSM 6068]
Length = 277
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ L++ R+G + +LP S +PMQ R A+A +++L P + N
Sbjct: 12 IVIFSLVLTRIGMLVFILPMFGSSSVPMQARAILAIAIALILTPVYAGALPSP-PENLMM 70
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ E LG GL + + G+Q GS+IS G+ L + + + L+
Sbjct: 71 LGLMLARESMLGLALGLAVMILLAGMQLAGSIISQMSGMTLADVANPTFDTSVPIFSQLL 130
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ L + + H V AL+ ++ +P GQ + +F I +R ++P
Sbjct: 131 EMLSLAIFFSLGGHRLVMSALLDTFKFMPPGQATFPEEAVEMLATIFTHSFEIGIRAAAP 190
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ ++ + + L+++ +PQ+ + + + L LS+ F
Sbjct: 191 AIISLLLAILVVALISRTLPQLNSVAVGLNFNAMIVLAILALSLGSAAMVFQEELE 246
>gi|83647784|ref|YP_436219.1| type III secretory pathway subunit EscT [Hahella chejuensis KCTC
2396]
gi|83635827|gb|ABC31794.1| Type III secretory pathway, component EscT [Hahella chejuensis KCTC
2396]
Length = 262
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 97/250 (38%), Gaps = 4/250 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTID 59
MT + V R+ + + ++P LS S+ +R ++ S+ L P + +
Sbjct: 2 MTHLMSDTLTLFMFTVPRLLAAMSVMPFLSKSFFGGTLIRNGVVLSLSLFLFPIVDEGYK 61
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ Y+ +++ E+ +G G L + L+ G I G + ++M
Sbjct: 62 PETM-APFMYALIILKEVIIGFCLGWLAALPFWALEAVGFFIDNQRGSTMASAMNPLTGS 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQT 177
+P+ L ++ + A+ SY PI + F L
Sbjct: 121 QASPVGILFVQTFTTLFFLGGNFLTLMGAIYASYHAWPIFSFFPRIELSAAGFFFAQLDY 180
Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
I++ ++P + + +GL+++ PQ+ ++F+S P + + L + +++
Sbjct: 181 FMSIVVLFAAPLIACMFLAEFGLGLVSRFAPQLNVFFLSMPIKSLVCMVMLTFYVGVLMR 240
Query: 238 QFSHSFLYGF 247
F +L F
Sbjct: 241 IFDERYLRTF 250
>gi|161502068|ref|YP_001569180.1| hypothetical protein SARI_00085 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863415|gb|ABX20038.1| hypothetical protein SARI_00085 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 263
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 82/230 (35%), Gaps = 5/230 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ S + RV LP L+ + R + ++ + P +
Sbjct: 12 LVASAAMGFARVAPIFFFLPFLNSGVLSGAPRNAIIVLVAMGVWPH---ELSEAPPFLSV 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
LV+ E +G + G L+ + G +I G L +S+ ++ + + + +
Sbjct: 69 AMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + + L KSY E + + L ++S
Sbjct: 129 LNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQHALVMAS 186
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 187 PVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAILIMLLYFSPVLP 236
>gi|29840695|ref|NP_829801.1| type III secretion inner membrane protein SctT [Chlamydophila
caviae GPIC]
gi|29835045|gb|AAP05679.1| type III secretion inner membrane protein SctT [Chlamydophila
caviae GPIC]
Length = 289
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 105/234 (44%), Gaps = 7/234 (2%)
Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80
++P L P +++ A+++ ++ P + + N+++ + L++ EL +G
Sbjct: 41 PVFAIVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMNTHIANYLDDDMFYILIVKELCIG 100
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
+ G ++ Q GS I+ G+ L+ + + +P + W+
Sbjct: 101 TLIGFILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLS 160
Query: 140 DFHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
H V L++S IPI + L I+ + + M Q ++ ++LS+P
Sbjct: 161 GGHRIVLTILLQSLEIIPIHKFLPMEMMSLDAPIWITLIKMCQLCLIMTIQLSAPAAVAM 220
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ ++ +G++N++ PQ+ + ++ + +G LFL LS IV Q + L F
Sbjct: 221 LMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLSWWFIVKQIDYFTLAWF 274
>gi|315636294|ref|ZP_07891544.1| flagellar biosynthetic protein FliR [Arcobacter butzleri JV22]
gi|315479383|gb|EFU70066.1| flagellar biosynthetic protein FliR [Arcobacter butzleri JV22]
Length = 249
Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 106/248 (42%), Gaps = 5/248 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+++ E + L++ R+ + ++ +P + I + VR+ FA SI + PF+ D+
Sbjct: 5 LSLLNEQTVYQFLLLLARILAFVVFMPVFGHTAINVTVRIAFAFYLSIFIYPFV----DI 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+N+ + ++ E+ LG V +L+ + ++ G + + L++ + +
Sbjct: 61 VTSINQNNFIISLISEITLGLVAAMLVNIIFSAVRIIGEFVEYSTALSMAMMFDPTTNSQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTF 179
E + L+ I L+ + + L KS+ I +G + + ++ ++ F
Sbjct: 121 EGLVAKLLFWISLMLFFQTGMYEMTLVILAKSFTMIHLGSFNIFSYDGIQLAIDEIKRMF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P F + ++ G K +P + I+ L +FL L +EI F
Sbjct: 181 SFAFAFALPLFFIGFIMDVYYGYGTKSMPAFSPFIITFQLKFALIFVFLILGMEIFADTF 240
Query: 240 SHSFLYGF 247
++ F+ F
Sbjct: 241 TNYFINKF 248
>gi|46906929|ref|YP_013318.1| flagellar biosynthesis protein FliR [Listeria monocytogenes
serotype 4b str. F2365]
gi|46880195|gb|AAT03495.1| flagellar biosynthetic protein FliR [Listeria monocytogenes
serotype 4b str. F2365]
Length = 253
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ RV S + P L IP V++ F MA SI + +D+
Sbjct: 4 EFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVA----TGVDVSGITML 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + Y L+KS+ L + L + ++
Sbjct: 120 ILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 239
>gi|283834478|ref|ZP_06354219.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC
29220]
gi|291070025|gb|EFE08134.1| flagellar biosynthetic protein FliR [Citrobacter youngae ATCC
29220]
Length = 260
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 99/235 (42%), Gaps = 3/235 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ ++ R+ + I P L + + +++R+ ++A + ++ P + + +
Sbjct: 12 LILGMWFPFVRIMAFIHYAPVLDNAALTIRIRIILSLALAFIITPLIPHPVPDNLLSINS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + G + GL+++ L LQ G ++S +G+++ S + T L +
Sbjct: 72 --IILTAEQFLWGMLFGLMLQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEM 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
I I ++ + +D H + L K + PIG L+ + + L L+
Sbjct: 130 INIYAVILFFAMDGHLLLVSILFKGFTYWPIGNALHPQS-LRTISLALGWVLAAATLLAL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P F ++ GLLN++ P + +Y + P + G + + + + H
Sbjct: 189 PTTFIMLIVQGCFGLLNRIAPPLNLYSLGFPINMLAGLICFATLLYNLPDHYLHL 243
>gi|168822291|ref|ZP_02834291.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|224584068|ref|YP_002637866.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|205341312|gb|EDZ28076.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|224468595|gb|ACN46425.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|320086101|emb|CBY95875.1| Secretion system apparatus protein ssaT [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 259
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 36 MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQ 95
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVD 96
Query: 96 FTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155
G ++ T G + T + + L + ++ + L +SY
Sbjct: 97 MAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156
Query: 156 IPIGQELNF-GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F
Sbjct: 157 LPPGRTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFF 216
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQF 239
S P L L L +S ++ +
Sbjct: 217 FSMPLKSILVLLTLLISFPYALHHY 241
>gi|320107035|ref|YP_004182625.1| type III secretion system inner membrane R protein [Terriglobus
saanensis SP1PR4]
gi|319925556|gb|ADV82631.1| type III secretion system inner membrane R protein [Terriglobus
saanensis SP1PR4]
Length = 262
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 101/241 (41%), Gaps = 4/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
I+ S L++ R+G I L P + IP ++++ F +A +I+L P + +
Sbjct: 17 HILASGTLVMVRLGGVIALAPPFNSPGIPPRIKVGFLLAMTILLAPIAAGIPEAHVDLE- 75
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V+ E+ +G + G + + L F GS++ + +L + + + L
Sbjct: 76 ---ITSVLGEMAVGLLFGFSLTLLNEALLFAGSLLGISFSFSLANLLDPNSRVDTPVLGI 132
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ G+L ++ + A+++S +P+G+ V M+ F L+L+
Sbjct: 133 LLNWFGILIIFGAGLDRLILAAVMRSLAVVPLGRATMHLGAVHQCVAMISGVFFAGLQLA 192
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+P + + +++ L+++ P +P + P + + L ++ I F
Sbjct: 193 TPIMAAALAVEVTVALISRFAPALPAQVVGIPLKTIVSYVVLIGALAIWPGWIERHFSSL 252
Query: 247 F 247
Sbjct: 253 L 253
>gi|323341372|ref|ZP_08081616.1| flagellar biosynthesis protein FliR [Lactobacillus ruminis ATCC
25644]
gi|323091249|gb|EFZ33877.1| flagellar biosynthesis protein FliR [Lactobacillus ruminis ATCC
25644]
Length = 252
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 91/238 (38%), Gaps = 3/238 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L LI CRV S + + P LS P +L +L + V A
Sbjct: 6 IQILGLIACRVFSFMSVAPILSERNFPNLCKLILGGGL---ILSAFSLAAAFEEEVALAV 62
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + + E G G L R+ G+ TG I G + + + + + +
Sbjct: 63 FILMAVKETIFGLAMGYLCRLVFFGVMITGQFIDFQDGFIMAQAYDPTMQSSTSQFGKMY 122
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ ++ + + Q+ L+ S+ + +G V + TF + + +P
Sbjct: 123 YWLAIMVFFASGLYRQMIRGLMTSFDIVSLGYPTLTDESIGGIVKLFAKTFEMAFNMGAP 182
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ +V +I +G+L++ +PQ+ + +S + + L + +V + +F
Sbjct: 183 IIISILVIDIVLGILSRSIPQLNVLMLSLNVKTTVSFIISMLVLPNMVDFLASNFSEM 240
>gi|116872067|ref|YP_848848.1| flagellar biosynthesis protein FliR [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740945|emb|CAK20065.1| flagellar biosynthetic protein FliR [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 253
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 86/240 (35%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ RV S + P L IP V++ F MA SI + +D+
Sbjct: 4 EFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVA----TGVDVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + + L+KS+ L + L + ++
Sbjct: 120 ILDTFFVVIFLSLQGMDYLIFYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 239
>gi|168239305|ref|ZP_02664363.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194734680|ref|YP_002114434.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|194710182|gb|ACF89403.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197288015|gb|EDY27402.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 259
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 1/206 (0%)
Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 36 SALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAV 95
Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154
G ++ T G + T + + L + ++ + L +SY
Sbjct: 96 DMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQ 155
Query: 155 TIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++
Sbjct: 156 YLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSVPAIICMVLADLALGLLNRSAQQLNVF 215
Query: 214 FISTPYLIGLGSLFLCLSIEIIVYQF 239
F S P L L L +S ++ +
Sbjct: 216 FFSMPLKSILVLLTLLISFPYALHHY 241
>gi|182680488|ref|YP_001834634.1| flagellar biosynthesis protein FliR [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636371|gb|ACB97145.1| flagellar biosynthesis protein FliR [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 251
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 128/244 (52%), Gaps = 1/244 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59
MT SP +++ + ++ CR+G C+MLLPG S IP++VRL A+A ++ L PFL + +
Sbjct: 1 MTFSPSHLVLFVTILFCRIGFCVMLLPGFSSPRIPLKVRLALALALTLTLTPFLAEEVRP 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ L++ E +G G R++ L+ T + ++ IG+ +++
Sbjct: 61 ALRDETPLLLAHLMISESLMGFFIGFSARIFFAALETTANAMAMMIGMTNVLGAPVNEEE 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
L++L+ + + L+++D H ++ LV SY +P+ N + L F
Sbjct: 121 PLPVLSALVTLSATVLLFIMDLHWEILRGLVGSYKAVPVIDHFNARLDLVQVADSLSKAF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ RL+ PF+ F I+ N+++GL+NK++PQIPIYFI+ P+++ G + + F
Sbjct: 181 FLSFRLAGPFIIFSIIVNLAVGLINKMIPQIPIYFITMPFVLIGGLFLFFATSTQLFELF 240
Query: 240 SHSF 243
F
Sbjct: 241 MFGF 244
>gi|313901466|ref|ZP_07834922.1| flagellar biosynthetic protein FliR [Thermaerobacter subterraneus
DSM 13965]
gi|313468272|gb|EFR63730.1| flagellar biosynthetic protein FliR [Thermaerobacter subterraneus
DSM 13965]
Length = 257
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 78/209 (37%), Gaps = 4/209 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L + R ++ P +P R A+ ++V+ P + Y
Sbjct: 14 FLLCLGRTSGLVVASPAFGGGLVPAPARALLAVLLALVVYPVMPPARP---PATALGYGA 70
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
++ E+ G GL+ + +Q G ++ + G L + S + L + ++
Sbjct: 71 ALLAEVAAGLALGLVTALVFAAVQLAGQLLDLSAGFGLSGVIDPVSSQSMPVLGHFLYLV 130
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
+ L D HH + AL SY + +++ F L LS P L
Sbjct: 131 MWVLLLATDGHHLILRALADSYRHL-PPGGAGLAGGAPVLLDLAGWMFATGLLLSLPVLA 189
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYL 220
+ +++GL+++ VPQ+ ++ P
Sbjct: 190 VLVAVMVALGLVSRAVPQLNVFITGLPVQ 218
>gi|197249409|ref|YP_002146622.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|238913176|ref|ZP_04657013.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
gi|197213112|gb|ACH50509.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 259
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 36 MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQ 95
+R M+ + +LP ++ + + + LV E+ +G + G V +
Sbjct: 37 ALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVD 96
Query: 96 FTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGT 155
G ++ T G + T + + L + ++ + L +SY
Sbjct: 97 MAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQY 156
Query: 156 IPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
+P G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F
Sbjct: 157 LPPGRTLLFDRQFLKYIQAEWRTLYQLCVSFSVPAIICMVLADLALGLLNRSAQQLNVFF 216
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQF 239
S P L L L +S ++ +
Sbjct: 217 FSMPLKSILVLLTLLISFPYALHHY 241
>gi|238755991|ref|ZP_04617316.1| hypothetical protein yruck0001_28530 [Yersinia ruckeri ATCC 29473]
gi|238705780|gb|EEP98172.1| hypothetical protein yruck0001_28530 [Yersinia ruckeri ATCC 29473]
Length = 264
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/225 (16%), Positives = 87/225 (38%), Gaps = 5/225 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
M++L L R+ LLP L+ + + V+ + + L P+L + +
Sbjct: 20 MITLALAYMRIAPVFFLLPFLNTKLLNGVVVKNSLIIYICLGLWPYLSRG---EFVRQQL 76
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+++ EL +G + I + L G +I G + ++ ++ + + ++L
Sbjct: 77 GIVDIILYELSIGVILAFFICMPFLIANIIGEIIDNQRGATISDTIDPANGIESSEFSAL 136
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I + +++ + SY +P GQ + + L T ++S
Sbjct: 137 LNYIVCMVFLSQGGMYKLVESFADSYKLMPFGQGFSLFEPL-LLGSWLNTLVSQGFIMAS 195
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
P L + +++GL ++ PQ+ + +S + L
Sbjct: 196 PVLVTLFLSEVALGLYSRFCPQLNAFSLSLAVKSIIAFSVFLLYF 240
>gi|257457601|ref|ZP_05622768.1| flagellar biosynthetic protein FliR [Treponema vincentii ATCC
35580]
gi|257444987|gb|EEV20063.1| flagellar biosynthetic protein FliR [Treponema vincentii ATCC
35580]
Length = 266
Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 48/238 (20%), Positives = 90/238 (37%), Gaps = 3/238 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL+ R+ + I P LS +P ++ A +++P + L Y+
Sbjct: 16 FFLVCVRIFAMISTTPLLSTRAVPRIAKISLAGLIGFLVMP-VAYGSPLDVQGFNLDYAL 74
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV+ E LG + G I + G S +G + + + + I
Sbjct: 75 LVVGEALLGVLTGFFISIIFASFSTAGQFFSYQMGFGVSEVYDALAQIENPLMGQFLNFI 134
Query: 132 GLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFGNI-FSSFVNMLQTTFMIMLRLSSPF 189
+L I +++S+ +I L + S V L + F+ + ++ P
Sbjct: 135 AVLIFLQIKGFQTLFLGGVLRSFQSINCFMFLEKRELVASFLVTNLGSLFLNAMMIAMPV 194
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + ++S+GLL+K PQ+ + P I L L +S+ + F GF
Sbjct: 195 MGTLFLVHVSMGLLSKAAPQMNLLSEGFPITILLTFFLLTVSLPFMANFFIRIMENGF 252
>gi|85706161|ref|ZP_01037256.1| flagellar biosynthetic protein FliR [Roseovarius sp. 217]
gi|85669325|gb|EAQ24191.1| flagellar biosynthetic protein FliR [Roseovarius sp. 217]
Length = 254
Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 113/238 (47%), Gaps = 5/238 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ ++ L+ RV I LLPG +PM++++ AF+++ P + +
Sbjct: 12 QEVLWLHALVFLRVAPIIGLLPGFGEQSVPMRIKVVLVFAFTLIAAPAIAPDLPDHVHAP 71
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A ++ E +G + G+ +R++ + LQ GS+ + + L+ +G + +
Sbjct: 72 SA---LTILSETLVGLIIGIGLRLFLMALQMAGSIAAQSTSLS--QILGNASLTPMPSIG 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ G+ + ++D H +V ++ SY P+ I V+ + F + L
Sbjct: 127 HLLATGGVALMMIMDLHVRVAELMILSYRVFPVQGVFKVSAITQWGVSQIAHAFSLGFML 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++PF+ +++N+++G++N+ +PQ+ + F+ P + L L L ++ ++ +F
Sbjct: 187 AAPFVLVSVLYNLTLGVINRAMPQMMVAFVGAPAITALALFVLMLVAPALLMAWAQAF 244
>gi|107025877|ref|YP_623388.1| Type III secretion protein SpaR/YscT [Burkholderia cenocepacia AU
1054]
gi|116692939|ref|YP_838472.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia
HI2424]
gi|105895251|gb|ABF78415.1| Type III secretion protein SpaR/YscT [Burkholderia cenocepacia AU
1054]
gi|116650939|gb|ABK11579.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia
HI2424]
Length = 269
Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L ++ R+ + ++P + I VR A+ + + P +
Sbjct: 13 GMLRPLLYVMPRLLPIMFVVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALP--F 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 71 LMWCLLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P ++ + +GL+ + VPQ+ I+ S P L L + L + ++
Sbjct: 191 LAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAVLMMILFLPVVYASLHSLL 249
>gi|238796943|ref|ZP_04640447.1| Flagellar biosynthetic protein fliR [Yersinia mollaretii ATCC
43969]
gi|238719203|gb|EEQ11015.1| Flagellar biosynthetic protein fliR [Yersinia mollaretii ATCC
43969]
Length = 259
Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 94/240 (39%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
I+ F + R+ + P + I + ++ A ++++ L + +
Sbjct: 12 IINQFFWPMLRILALFSTAPIFNEKGIGRKTKVGLAAIIALLVGQHLPNN---HIEIFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + +G GL I++ + ++ G +I +GL+ T + + +
Sbjct: 69 TGLWVGAKQFIIGAAMGLTIQLIFVAVRNAGEIIGLQMGLSFATFYDPAAGGNMPVVARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ L ++ H + L S+ +PI + F + F L L
Sbjct: 129 LNLLVTLLFLTLNGHLWMLSILADSFIALPINSDEFNSEGFIYLPHAAGLIFRFGLMLGL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN+L PQ+ I+ + P +G G L + + + F + F
Sbjct: 189 PIITLLLCLNLTLGLLNRLTPQLSIFVVGFPLTLGTGMAALSMMMYTLSPFFENMMEEIF 248
>gi|170737796|ref|YP_001779056.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia
MC0-3]
gi|254250202|ref|ZP_04943522.1| Type III secretory pathway, component EscT [Burkholderia
cenocepacia PC184]
gi|124876703|gb|EAY66693.1| Type III secretory pathway, component EscT [Burkholderia
cenocepacia PC184]
gi|169819984|gb|ACA94566.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia
MC0-3]
Length = 269
Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L ++ R+ + ++P + I VR A+ + + P +
Sbjct: 13 GMLRPLLYVMPRLLPIMFVVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALP--F 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 71 LMWCLLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P ++ + IGL+ + VPQ+ I+ S P L L + L + ++
Sbjct: 191 LAAPVTIVLVLVELGIGLVGRAVPQLNIFVFSQPLKSALAVLMMILFLPVVYASLHSLL 249
>gi|291562037|emb|CBL40853.1| flagellar biosynthetic protein FliR [butyrate-producing bacterium
SS3/4]
Length = 252
Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 1/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ ++ + V R+ I P S P+++R F A S++L D + + A
Sbjct: 1 MFITFSMAVMRMSGAIGFNPLFGKSNFPVKIRAYFIFALSLLLY-LSADQTQMAYPGSMA 59
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y ++ ELFLG V + + L ++F S++ ++GL++ T + +
Sbjct: 60 EYILMLAGELFLGAVLAFAMELAFLTIRFASSIMDYSMGLSMAQVYDPQYGTQSTVSSGI 119
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+L + + H ++ +S IP G+ + + ++ +
Sbjct: 120 YYAFMVLIFFASNSHLRLLELFYQSVQLIPFGKVTFNPMLVHVITAGFCQGILTGMQFAF 179
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + +V +++G+L +++PQI ++ ++ I +G L + L + F Y +
Sbjct: 180 PMIAIELVSELAMGILMRIIPQINVFTVNFQVKIIMGLLMMLLLFSPMADYIDTIFTYMY 239
>gi|15606960|ref|NP_214342.1| flagellar biosynthetic protein FliR [Aquifex aeolicus VF5]
gi|6225369|sp|O67773|FLIR_AQUAE RecName: Full=Flagellar biosynthetic protein fliR
gi|2984202|gb|AAC07732.1| flagellar biosynthetic protein FliR [Aquifex aeolicus VF5]
Length = 258
Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 51/245 (20%), Positives = 103/245 (42%), Gaps = 3/245 (1%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
++ E +++L L R+ S + P IP +RL A A S +L F+ I
Sbjct: 4 VTSEEFLITLLLSYFRIVSFLFTFPFYGSFLIPNTIRLYLAFALSFAVLSFI--NITPVK 61
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
+ + EL G GL++R+ L G +I+ GL +
Sbjct: 62 VNTFVEFLVYALNELLFGFSAGLILRLLFDALIIAGELIALHTGLGFLQMFIP-GMTQMS 120
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
+ + G L + + L +S+ +P+G F F+N +F +
Sbjct: 121 LFSGFFTLYGTLIFLSLGGGEFIILGLAESFKRLPVGSFNIFYLNPEVFLNFFYESFRLG 180
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++++ P + ++ N+ + ++N+ +PQ+ ++ + P + +G + L LS+ +I S+
Sbjct: 181 VKIAMPLILTALILNLVLAVVNRFIPQMNVFMVGLPLQVSIGLIILLLSLPLITITMSNH 240
Query: 243 FLYGF 247
F F
Sbjct: 241 FQDFF 245
>gi|238785153|ref|ZP_04629147.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia bercovieri ATCC
43970]
gi|238713968|gb|EEQ05986.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia bercovieri ATCC
43970]
Length = 264
Score = 95.7 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 99/234 (42%), Gaps = 3/234 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L + R +++LP + + +R A ++ + P L+ + L +
Sbjct: 7 WLGALGLAMMRPYGTLLILPLFTARSLGSALLRNALIFAIALPITP-LFFSPSLMTHESF 65
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L EL +G + G + + + G +I T G + T S + +
Sbjct: 66 TAWFGLFCTELLIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGV 125
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRL 185
L + + + + V AL SY T+PIG + + + Q + + L
Sbjct: 126 LFTQLLTVLFLISGGFNLVLGALYGSYDTLPIGSGIHPSSAMLPFLQSEWQLMYELCLSF 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P + ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ +
Sbjct: 186 ALPAMMVMVLADLSLGLINRSAQQLNVFFLAMPIKSALALLLLLISLPYALHHY 239
>gi|259417172|ref|ZP_05741091.1| flagellar biosynthetic protein FliR [Silicibacter sp. TrichCH4B]
gi|259346078|gb|EEW57892.1| flagellar biosynthetic protein FliR [Silicibacter sp. TrichCH4B]
Length = 259
Score = 95.7 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 113/234 (48%), Gaps = 5/234 (2%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
++ R+G+ ++ G IP Q+RL + F+ ++ P L + Y+ L+
Sbjct: 23 IVFLRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPALPQMPIPETV---MQYAGLI 79
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
E+ +G GL +R++ LQ GS+ + L+ +G + + L +++ I G+
Sbjct: 80 ATEVVVGLSLGLGLRMFMHMLQTAGSIAAQCTSLS--QVLGGAGADPMPALGAVLWISGI 137
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
++DFH +++SY P+G+ + + V+ + TF L++PFL
Sbjct: 138 AVAVMLDFHIHAAQLMIRSYDLFPVGRFPDAAGLSEWGVHRVSATFAQAFTLAAPFLITA 197
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+++N+++G++N+ + Q+ + F+ P + G L + +++ + + L F
Sbjct: 198 VIYNLTLGVINRAMTQLMVVFVGAPVITFGGLSILMIGAPMMLEVWGRNLLMFF 251
>gi|255348945|ref|ZP_05380952.1| type III secretion system, membrane protein [Chlamydia trachomatis
70]
gi|255503484|ref|ZP_05381874.1| type III secretion system, membrane protein [Chlamydia trachomatis
70s]
gi|255507162|ref|ZP_05382801.1| type III secretion system, membrane protein [Chlamydia trachomatis
D(s)2923]
gi|296435170|gb|ADH17348.1| type III secretion system, membrane protein [Chlamydia trachomatis
E/150]
gi|296438890|gb|ADH21043.1| type III secretion system, membrane protein [Chlamydia trachomatis
E/11023]
Length = 289
Score = 95.7 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 110/243 (45%), Gaps = 7/243 (2%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + +
Sbjct: 31 FLLLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYI 90
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGI 130
L++ E+ +G + GLL +Q GS I+ G+ L+ + + +P
Sbjct: 91 LLIKEILIGVLIGLLFSFPFYAVQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHY 150
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLR 184
+ W+ H + L++S IP+ ++ + + M Q ++ ++
Sbjct: 151 FVTIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMCQLCLIMTIQ 210
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
LS+P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + L
Sbjct: 211 LSAPAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDYFTL 270
Query: 245 YGF 247
F
Sbjct: 271 AWF 273
>gi|328545480|ref|YP_004305589.1| Bacterial export protein, family 1 [polymorphum gilvum SL003B-26A1]
gi|326415221|gb|ADZ72284.1| Bacterial export protein, family 1 [Polymorphum gilvum SL003B-26A1]
Length = 258
Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 78/236 (33%), Positives = 137/236 (58%), Gaps = 1/236 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD-TIDLQNFVNRA 67
+++ FL+ CR+G+C+M++PG S I +++RL A+A ++ L P L + ++ A
Sbjct: 16 VLATFLLFCRIGACLMVIPGFSSDRIAVRIRLLVAVAATLALAPLLLPVMSEALPDMSLA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ ++ ELF+G + GLL R + L+ G++++ AIG++ + I + A PL SL
Sbjct: 76 TTVRFIVAELFVGLLIGLLGRAFMAALETIGTLVAMAIGMSNIPGVAIDGADALPPLASL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + +++ H +VF L SY T+P G ++ + F L TTF++ LR+ S
Sbjct: 136 MTLTATALIFISGHHWEVFRGLAASYETLPPGGAISLRSGLEQFTEQLATTFVLALRIGS 195
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
PF+ + +V N +IGL NKL PQIP+YFI+ P++I G FL +++ + F +
Sbjct: 196 PFIVYSVVVNFAIGLTNKLTPQIPVYFIAMPFVIAGGLYFLFVAVVEAMTVFLDGY 251
>gi|294084389|ref|YP_003551147.1| flagellar biosynthetic protein FliR [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663962|gb|ADE39063.1| flagellar biosynthetic protein FliR [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 225
Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 88/209 (42%), Gaps = 2/209 (0%)
Query: 34 IPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLG 93
+P+Q+R+ A ++ + + N + ++ E+ +G GL++ ++ G
Sbjct: 1 MPLQIRIIMAFMLAMSVA--IQVEPIDVNVITSLPGFMIMATEITIGLAAGLVLTIWFAG 58
Query: 94 LQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSY 153
G I++ GL + S ++ ++ + + +D H V +++SY
Sbjct: 59 ALLAGEKIASTAGLGFAAQVDPSTGGQTPVISQILYLFLTVIFLSLDGHLMVIRIMLESY 118
Query: 154 GTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213
+P+G + G + + ++ + F + + P + ++ N+SIG++ + PQ+ ++
Sbjct: 119 SIMPLGHVPDMGILVEAGISAAGSMFFVGAIIMLPVVIILLMINVSIGVITRSAPQLNLF 178
Query: 214 FISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + + L S + S
Sbjct: 179 SFGFPISMLGVFIVLYFSAGTLSSNMSDL 207
>gi|126734113|ref|ZP_01749860.1| flagellar biosynthetic protein FliR [Roseobacter sp. CCS2]
gi|126716979|gb|EBA13843.1| flagellar biosynthetic protein FliR [Roseobacter sp. CCS2]
Length = 259
Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 53/241 (21%), Positives = 111/241 (46%), Gaps = 2/241 (0%)
Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ + +LF + R+G+ + +LP +P +VRL A+ F++++ P + + +
Sbjct: 11 SQAALWTLFAVFTRIGAVMAVLPAFGDQPVPTRVRLVLAVMFTLIVAPAVAPSFETVPTA 70
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
A + L M E G G+ +R + L LQ GS+ + + L+ G + + +
Sbjct: 71 LLAGFGILAM-EALTGLFFGIFLRFFILVLQIAGSIAAQSTSLSQIFG-GTAAVDPQPAI 128
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
++ + G + H Q ++ +Y +P G L + V + TF
Sbjct: 129 GHMLVVSGTALAALSGLHIQAASYMIHTYTLVPFGAGLERSLVAEVGVAEVGRTFGFGFM 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L++PFL +++N+ +G++N+ +PQ+ + F+ P L G L+ I++ + +F
Sbjct: 189 LAAPFLIASLIYNVVLGVINRAMPQLMVSFVGAPALTAGGLFLFFLTAPIMLAIWVAAFS 248
Query: 245 Y 245
Sbjct: 249 D 249
>gi|149178712|ref|ZP_01857295.1| flagellar biosynthetic protein fliR/B [Planctomyces maris DSM 8797]
gi|148842410|gb|EDL56790.1| flagellar biosynthetic protein fliR/B [Planctomyces maris DSM 8797]
Length = 329
Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 53/286 (18%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ------- 61
+ L++ R+ +++ P P +R+ ++ S+++ P L D +
Sbjct: 29 FYAFTLVLVRISGLMIIGPVFGQPIFPTNIRILLILSLSLLITPTLHDQTTVGFYQLDSN 88
Query: 62 -------------------------------------------NFVNRAYYSKLVMVELF 78
+ Y+ ++ EL
Sbjct: 89 QDQRLSQDEVPEHLQDRFEDLVVTAGRQATRELTVNDYRFVTRMPNSLLDYAWSILGELT 148
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
LG GL I + L LQ G +I G+ L + + + IG+ +
Sbjct: 149 LGFSLGLGIYIILLSLQMAGQMIDQQAGMALGEVFNPGFDMNASLSGQYLYFIGISVFLL 208
Query: 139 I---DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195
+ + H + +L+ ++ P+G+ + N ++ + ++ +++++P L +
Sbjct: 209 MEPVNGHLLMLSSLIDTFQVFPVGEGIVSTNTLDLLQTLMHQSLVLSIKVAAPLLAISAL 268
Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+IS+G L VPQI + I P + + L ++
Sbjct: 269 ISISMGYLGHTVPQINVLVIGFPIRAMISLIVLVFTLSGAADIVVE 314
>gi|170698143|ref|ZP_02889222.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
IOP40-10]
gi|170136908|gb|EDT05157.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
IOP40-10]
Length = 256
Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 88/237 (37%), Gaps = 6/237 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L + RV LLP LS + + + +++ LW + + +
Sbjct: 16 LAPLAIGYARVAPVFYLLPFLSDRTLANTLTKHIVI---FMVVLGLWPVMAHPHPADWGT 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+++ E+ +G V G+ + + G +I G + S+ + + + + +
Sbjct: 73 LLMVLVQEVLIGLVLGVTLALPFWIATSVGELIDNQRGATISGSLDPATGVDASIFSPFV 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
++ + A+ SY + G L+ F +L + L L++P
Sbjct: 133 SLMYAALFLQQGGMVVIVQAIADSYHHVATGAMLHGD--LWRFGRLLTDSVGKGLVLAAP 190
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI-EIIVYQFSHSFL 244
+ ++ +GL ++ PQ+ + +S L + L L E + + +F
Sbjct: 191 VSIVMFLTDVMLGLFSRFCPQVNAFSLSLSIKSVLAFVVLHLYFVEAMPSAITRAFD 247
>gi|15605293|ref|NP_220079.1| Yop proteins translocation protein T [Chlamydia trachomatis
D/UW-3/CX]
gi|76789301|ref|YP_328387.1| SctT [Chlamydia trachomatis A/HAR-13]
gi|166154779|ref|YP_001654897.1| type III secretion system, membrane protein [Chlamydia trachomatis
434/Bu]
gi|166155654|ref|YP_001653909.1| type III secretion system, membrane protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802993|ref|YP_002888187.1| type III secretion system, membrane protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237804915|ref|YP_002889069.1| type III secretion system, membrane protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311383|ref|ZP_05353953.1| type III secretion system, membrane protein [Chlamydia trachomatis
6276]
gi|255317684|ref|ZP_05358930.1| type III secretion system, membrane protein [Chlamydia trachomatis
6276s]
gi|301336054|ref|ZP_07224298.1| type III secretion system, membrane protein [Chlamydia trachomatis
L2tet1]
gi|3329005|gb|AAC68166.1| Yop proteins translocation protein T [Chlamydia trachomatis
D/UW-3/CX]
gi|76167831|gb|AAX50839.1| SctT [Chlamydia trachomatis A/HAR-13]
gi|165930767|emb|CAP04264.1| type III secretion system, membrane protein [Chlamydia trachomatis
434/Bu]
gi|165931642|emb|CAP07218.1| type III secretion system, membrane protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|231273215|emb|CAX10128.1| type III secretion system, membrane protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274227|emb|CAX11021.1| type III secretion system, membrane protein [Chlamydia trachomatis
B/Jali20/OT]
gi|296436098|gb|ADH18272.1| type III secretion system, membrane protein [Chlamydia trachomatis
G/9768]
gi|296437026|gb|ADH19196.1| type III secretion system, membrane protein [Chlamydia trachomatis
G/11222]
gi|296437958|gb|ADH20119.1| type III secretion system, membrane protein [Chlamydia trachomatis
G/11074]
gi|297140459|gb|ADH97217.1| type III secretion system, membrane protein [Chlamydia trachomatis
G/9301]
gi|297748694|gb|ADI51240.1| type III secretion inner membrane protein SctT [Chlamydia
trachomatis D-EC]
gi|297749574|gb|ADI52252.1| type III secretion inner membrane protein sctT [Chlamydia
trachomatis D-LC]
Length = 289
Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 108/243 (44%), Gaps = 7/243 (2%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + +
Sbjct: 31 FLLLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYI 90
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGI 130
L++ E+ +G + G L Q GS I+ G+ L+ + + +P
Sbjct: 91 LLIKEILIGVLIGFLFSFPFYAAQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHY 150
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLR 184
+ W+ H + L++S IP+ ++ + + M Q ++ ++
Sbjct: 151 FVTIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMCQLCLIMTIQ 210
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
LS+P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + L
Sbjct: 211 LSAPAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDYFTL 270
Query: 245 YGF 247
F
Sbjct: 271 AWF 273
>gi|88704275|ref|ZP_01101989.1| flagellar biosynthetic protein FliR [Congregibacter litoralis KT71]
gi|88701326|gb|EAQ98431.1| flagellar biosynthetic protein FliR [Congregibacter litoralis KT71]
Length = 259
Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 111/240 (46%), Gaps = 2/240 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + RV + + P S S I ++VR+ A+ + ++ P L T ++
Sbjct: 14 LLHTYLWPFLRVSAMFLAAPIFSYSSISVRVRVLLAVLVAALVAPLLPTTPVVEPLSAVG 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + E+ +G V G ++++ + G ++ ++GL S+ + + ++ L
Sbjct: 74 --LVLALREVAIGLVMGFVMQLVFAAVVVAGHSVAMSMGLGFAMSVDPQNGVQVPVVSQL 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ L ID H + A+V S+G +P+G ++ +FS+ ++ F L L+
Sbjct: 132 NVVLATLLFLAIDGHLILISAVVDSFGLVPVGSAISPEGMFSNVASLGTQLFASALLLAL 191
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P L ++ N++ G++ + PQ+ I+ + P I G +F+ L++ + + G
Sbjct: 192 PTLTAILMINVAFGVITRAAPQLNIFAVGFPVTIIAGFVFMLLALPMFISTLQRFLSLGL 251
>gi|262394131|ref|YP_003285985.1| type III secretion protein SpaR [Vibrio sp. Ex25]
gi|262337725|gb|ACY51520.1| type III secretion protein SpaR [Vibrio sp. Ex25]
Length = 241
Score = 95.3 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 89/227 (39%), Gaps = 4/227 (1%)
Query: 20 GSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+C + LP LS + VR + ++ + P + L + + ++ E+
Sbjct: 1 MACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-SLPAEADGIWLIVILGKEVL 59
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
+G + G + + ++ G ++ G + + + TP L+ + +
Sbjct: 60 IGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTLITLFFS 119
Query: 139 IDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
YAL KSY + PI S F + + + +S+P + +
Sbjct: 120 GGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLMSAPLVLAMFLA 179
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ L+++ PQ+ ++F++ P + S+ L + + +++ F F
Sbjct: 180 EFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGLMMDHFEVQF 226
>gi|91224468|ref|ZP_01259730.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
gi|91190810|gb|EAS77077.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
Length = 241
Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 4/227 (1%)
Query: 20 GSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+C + LP LS + VR + ++ + P + L + + ++ E+
Sbjct: 1 MACFIFLPILSKQMLGGTMVRNGVLCSLALFIFPMINQQ-SLPAETDGIWLIMILGKEVL 59
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
+G + G + + ++ G ++ G + + + TP L+ + +
Sbjct: 60 IGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASMFNPTLGSQSTPTAVLLTQTLITLFFS 119
Query: 139 IDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
YAL KSY + PI S F + + + +S+P + +
Sbjct: 120 GGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLMSAPLVLAMFLA 179
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ L+++ PQ+ ++F++ P + S+ L + + I++ F F
Sbjct: 180 EFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGIMMDHFEVQF 226
>gi|62185509|ref|YP_220294.1| putative type III export protein [Chlamydophila abortus S26/3]
gi|62148576|emb|CAH64348.1| putative type III export protein [Chlamydophila abortus S26/3]
Length = 289
Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 105/234 (44%), Gaps = 7/234 (2%)
Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80
++P L P +++ A+++ ++ P + + + N+++ + L++ E+ +G
Sbjct: 41 PIFAIVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHVANYLDDDVFYILIIKEICIG 100
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
+ ++ Q GS I+ G+ L+ + + +P + W+
Sbjct: 101 TLISFILSFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIVFWLS 160
Query: 140 DFHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
H V L++S IPI + L I+ + + M Q ++ ++LS+P
Sbjct: 161 GGHRIVLTILLQSLEVIPIHKFLPMEMMSLDAPIWITLIKMCQLCLIMTIQLSAPAAVAM 220
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + L F
Sbjct: 221 LMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDYFTLAWF 274
>gi|161503485|ref|YP_001570597.1| hypothetical protein SARI_01561 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864832|gb|ABX21455.1| hypothetical protein SARI_01561 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 259
Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 79/203 (38%), Gaps = 1/203 (0%)
Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97
+R ++ + +LP ++ + + L+ E+ +G + G V +
Sbjct: 39 LRNGVLISLTFPVLPIIYQQHIFMHVGKDYSWLGLITGEIIIGFLIGFCAAVPFWAVDMA 98
Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIP 157
G ++ T G + + + L + ++ + L +SY +P
Sbjct: 99 GFLLDTLRGATMGAIFNSTMEAETSLFGLLFSQFLCMIFFISGGMEFILNILYESYQYLP 158
Query: 158 IGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFIS 216
G+ L F +T + + + S P + ++ ++++GLLN+ Q+ ++F S
Sbjct: 159 PGRTLLFDRQFLKYIQVEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS 218
Query: 217 TPYLIGLGSLFLCLSIEIIVYQF 239
P L L L +S ++ +
Sbjct: 219 MPLKSILVLLMLLISFPYALHHY 241
>gi|313634415|gb|EFS01002.1| flagellar biosynthesis protein FliR [Listeria seeligeri FSL N1-067]
Length = 253
Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 89/240 (37%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ CR+ S + P L +IP V++ F MA SI + + D+
Sbjct: 4 EFFLAVVIVFCRIASFLFFFPLLKGRHIPNSVKVIFGMAISIPVATVV----DVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + + L+KS+ L F+ L + ++
Sbjct: 120 ILDTFFVVIFLSLQGLDYLIFYLMKSFEFTASVLILFEKGFIDLFLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEM 239
>gi|206563887|ref|YP_002234650.1| type III secretion system protein [Burkholderia cenocepacia J2315]
gi|18092676|gb|AAL59405.1| BcscT [Burkholderia cenocepacia]
gi|28394257|gb|AAO31732.1| BcscT [Burkholderia cenocepacia]
gi|198039927|emb|CAR55905.1| type III secretion system protein [Burkholderia cenocepacia J2315]
Length = 269
Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 82/239 (34%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L ++ R+ ++++P + I VR A+ + + P +
Sbjct: 13 GMLRPLLYVMPRLLPVMLIVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALP--F 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV E +G + +Q G +I G P +
Sbjct: 71 LMWCLLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSG 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ + + + +SY PIG + + V T F M++
Sbjct: 131 FLNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVK 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P ++ + +GL+ + VPQ+ I+ S P L L + L + ++
Sbjct: 191 LAAPVTIVLVLVELGVGLVGRAVPQLNIFVFSQPLKSALAMLMMILFLPVVYASLHALL 249
>gi|289525609|emb|CBJ15087.1| type III secretion system, membrane protein [Chlamydia trachomatis
Sweden2]
Length = 289
Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 110/243 (45%), Gaps = 7/243 (2%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ R+ S + ++P L P +++ A+++ +LLP + + ++ + +
Sbjct: 31 FLLLAARILSMLSIIPFLGAKLFPSPIKIGIALSWMGLLLPQVIQDSTIVHYQDLDIFYI 90
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGI 130
L++ E+ +G + GLL +Q GS I+ G+ L+ + + +P
Sbjct: 91 LLIKEILIGVLIGLLFSFPFYAVQSAGSFITNQQGIQGLEGATSLVSIEQTSPHGIFYHY 150
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLR 184
+ W+ H + L++S IP+ ++ + + M Q ++ ++
Sbjct: 151 FVTIVFWLAGGHRIILSVLLQSLEIIPLHAVFPESMMSLRAPMWIAILKMYQLCLIMTIQ 210
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
LS+P ++ ++ +G++N++ PQ+ + ++ + +G LFL L+ IV Q + L
Sbjct: 211 LSAPAAVAMLMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIVKQIDYFTL 270
Query: 245 YGF 247
F
Sbjct: 271 AWF 273
>gi|115360592|ref|YP_777729.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
AMMD]
gi|172064916|ref|YP_001815628.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MC40-6]
gi|115285920|gb|ABI91395.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
AMMD]
gi|171997158|gb|ACB68075.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MC40-6]
Length = 268
Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 5/238 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ +M+ P S + + +VR A+ + + + L +
Sbjct: 18 FLIVLGLCSERLMVLMMIFPPTSDNVVQGRVRTALALLWGSFVA---YGQRGLLEQGDAT 74
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G G + G+ + G N S + ++L
Sbjct: 75 ILVGIGLKEALIGVGLGFAASTVFWAAESVGTYVDDLTGFNQLQMQNPSQGQQTSLTSTL 134
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRL 185
+ + A W + + A+ +SY P+G G S + + + +L
Sbjct: 135 LSQFAIAAFWCLGGMTFLLGAIYESYTWWPLGSLAPAGGSVLESFVLLKTDSLMETVAKL 194
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++P + ++ +I G K+ ++ + ++ P L L L L I + Q
Sbjct: 195 ATPMMLMLLLIDIGFGFTGKVSQKLDLPSLAQPVKGALTILMLALLAAIFIDQVRDQL 252
>gi|260775665|ref|ZP_05884561.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608081|gb|EEX34250.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC
BAA-450]
Length = 259
Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/239 (16%), Positives = 95/239 (39%), Gaps = 3/239 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +L + + RV ++++P S + +R A A + + P ++ L +
Sbjct: 12 WLKTLSVALARVLPIVIMVPLFSSRELKGVIRYGVAFALCMFIAPLIYGDDALHTMASN- 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
S L++ EL LG V G L+ + G++ G + S +PL+ +
Sbjct: 71 QLSFLLLKELVLGIVIGALMAMPFWLFDSVGALFDNQRGALIGGQFNPLLSGVSSPLSHM 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ ++ L + + + + SY P + ++ ++ + TF M+
Sbjct: 131 LQQCAIIVLIEVVGVNVLLDTIWNSYRAWPPLRWTPAFSPDMNQQWLANISITFTKMILY 190
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++P + + ++ LL PQ+ ++ +S P +G L + + +++
Sbjct: 191 AAPLIVVMLFIEFAMALLGLYSPQMQVFVLSIPIKCLVGMAMLTIYLSVLLRFMEQDME 249
>gi|254445194|ref|ZP_05058670.1| Bacterial export protein, family 1 [Verrucomicrobiae bacterium
DG1235]
gi|198259502|gb|EDY83810.1| Bacterial export protein, family 1 [Verrucomicrobiae bacterium
DG1235]
Length = 256
Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 96/238 (40%), Gaps = 2/238 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ LI+ RV + P S IP+ ++ A AF++++ P + + N +
Sbjct: 7 ITLFLLILTRVLGLFLAAPVFSHKSIPVIAKVTLAAAFAMMVFPMVDHEVA--NPASIWS 64
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ EL +G + G+ IR+ L F VI+ IGL + S ++ I
Sbjct: 65 LTLWFAKELTVGLMMGIAIRMVFFVLDFASHVITVEIGLQPGPAFDPGSSSSQGNPLGTI 124
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
L L + + + A ++S+ PIG + F I + + +P
Sbjct: 125 IYFLGLMLLLSGSEYNMLRAFMRSFEIAPIGFFGLNSFAADFIILKTADIFRIGILMGAP 184
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + N+ L K+VP++ ++ +S I LG+ L L++ ++ +
Sbjct: 185 IVAVNFLVNLVFATLGKVVPKLNVFILSFSARIFLGTTVLTLTVGLLAHYAMAYIEET 242
>gi|27904583|ref|NP_777709.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|46395828|sp|Q89AZ0|FLIR_BUCBP RecName: Full=Flagellar biosynthetic protein fliR
gi|27903980|gb|AAO26814.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 257
Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 102/236 (43%), Gaps = 3/236 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +LF R+ + P + +I +++L A S + FL + +
Sbjct: 12 FIYNLFFPAVRILALFSTAPLFNSKFIEKKIKLIMAFVISWIFSSFLP---KVNIAIFSV 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+++ ++ +G + GL +++ + +G +IS +GL+ + + + L+
Sbjct: 69 DGILIIIEQMLIGILLGLTMQLIFSSIFMSGEIISLQMGLSFSSLFDFNSRSNLSALSHF 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ I LL + H + AL ++ TIPI + NIF VN + F + L
Sbjct: 129 VHIFLLLLFLEWNGHIWMLSALFDTFITIPIQKIYLDPNIFLKVVNFSKYIFFDSIMLLF 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
P + ++ N+SIG+LN++ PQI I + + +G + L I I F
Sbjct: 189 PIIIVQLLLNLSIGILNRVAPQISILSLGFTVTLLVGIILLYFFIPIFPSSCIVIF 244
>gi|148269162|ref|YP_001243622.1| flagellar biosynthetic protein FliR [Thermotoga petrophila RKU-1]
gi|170287824|ref|YP_001738062.1| flagellar biosynthetic protein FliR [Thermotoga sp. RQ2]
gi|281411460|ref|YP_003345539.1| flagellar biosynthetic protein FliR [Thermotoga naphthophila
RKU-10]
gi|147734706|gb|ABQ46046.1| flagellar biosynthetic protein FliR [Thermotoga petrophila RKU-1]
gi|170175327|gb|ACB08379.1| flagellar biosynthetic protein FliR [Thermotoga sp. RQ2]
gi|281372563|gb|ADA66125.1| flagellar biosynthetic protein FliR [Thermotoga naphthophila
RKU-10]
Length = 256
Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 96/233 (41%), Gaps = 3/233 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ I R ++ P S P++VR+ + S ++L + +I L V
Sbjct: 9 EEKFLAWMCIFTRFTGFFLIAPFFSERAFPVEVRVFLGLFTSWLMLFTVDVSIPLNTPV- 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
++ + +G G ++ ++ G + IG ++ + + P
Sbjct: 68 -LSFTLNLFFNFLVGFGIGFIVYLFLQAFNGAGYIFGFQIGFGMEEVLAFGE-EETNPTG 125
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ I L +I VF L S P+ FS V F+++L++
Sbjct: 126 ELVYFIALTVFVLIKGPVLVFEGLKDSIDVFPVNLTGVADGFFSYVVERSSDFFVLILKI 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+P + F ++ +I +G++++L+PQ+ ++ + P + +G + + + I
Sbjct: 186 GAPVIAFMLIISIVLGIVSRLIPQMNVFMVGLPLKVIIGVILILGMLPIWAEV 238
>gi|159045797|ref|YP_001534591.1| flagellar biosynthesis protein FliR [Dinoroseobacter shibae DFL 12]
gi|157913557|gb|ABV94990.1| flagellar biosynthesis protein FliR [Dinoroseobacter shibae DFL 12]
Length = 257
Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 105/241 (43%), Gaps = 2/241 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L + R+G+ + LP +P++++L +A + ++LP L T A
Sbjct: 12 VFPVFILALLRIGAAMAFLPAFGERAVPLRIKLVLTLALTALVLPTLLAT-GAPPLERPA 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E+ G G R+ LQ G++ + + L G + L ++
Sbjct: 71 DWVLAGGAEVVSGLFLGFTFRLMVFALQVAGTIAAQSTSLAQVFG-GAVTPDPQPALGNI 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ GL + H + A + S+ +P+G N I + + + F++ LS+
Sbjct: 130 FLMAGLALAALSGLHVHLTEAFLLSFLLLPVGNFPNSDIISAWAIADVSRMFVVGFTLSA 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
PF+ +++N+++G +N+ +PQ+ + F+ P L G LS+ ++ + + F
Sbjct: 190 PFVAAAMLYNLALGAINRAMPQLMVAFVGAPALTLGGLALAALSVPFLLTHWWYLFEASI 249
Query: 248 F 248
F
Sbjct: 250 F 250
>gi|222100639|ref|YP_002535207.1| Flagellar biosynthetic protein fliR [Thermotoga neapolitana DSM
4359]
gi|221573029|gb|ACM23841.1| Flagellar biosynthetic protein fliR [Thermotoga neapolitana DSM
4359]
Length = 256
Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 3/232 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ + R ++ P S P+ V++ A+ S + L ++ L V
Sbjct: 9 EEKFLAWMCLFTRFTGFFVIAPFFSERAFPVVVKVFLALFTSWLTLYSSNMSLPLDTPVL 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L +G G ++ ++ G + +G ++ + + P
Sbjct: 69 TLTLNLLFN--FLVGFSLGFIVYLFLQAFNGAGYIFGFQMGFGMEEVLAFGE-EQTNPTG 125
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
LI ++GL +I +F L S P+ + FS V F+++L++
Sbjct: 126 ELIYLLGLTVFVLIKGPLLIFEGLKDSLEVFPVNLVNLKEDFFSYIVQRSDEFFVMILKI 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P + F + +I +G++++L+PQ+ ++ + P + +G + + + I
Sbjct: 186 GIPIIAFMFIVSIVLGIVSRLIPQMNVFMVGLPLKVMIGFVLIAGMLPIWAD 237
>gi|238787479|ref|ZP_04631277.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia frederiksenii
ATCC 33641]
gi|238724266|gb|EEQ15908.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia frederiksenii
ATCC 33641]
Length = 257
Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 94/228 (41%), Gaps = 3/228 (1%)
Query: 14 LIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
L + R +++LP + + +R A ++ + P + L +++ L
Sbjct: 3 LAMMRPYGMLLILPLFTARSLGSSLLRNSLVFAIALPVTPLFFSASLLLQDSLTSWFWLL 62
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
M EL +G + G + + + G +I T G + T S + + L +
Sbjct: 63 CM-ELLIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGVLFTQLL 121
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM-LQTTFMIMLRLSSPFLF 191
+ + + V AL SY +P G + + F+ Q + + L + P L
Sbjct: 122 TVLFLISGGFNLVLAALYGSYSILPAGSGIQPSPVMLQFLQSEWQLMYELCLNFALPALL 181
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++ ++S+GL+N+ Q+ ++F++ P L L +S+ ++ +
Sbjct: 182 VMVLADLSLGLVNRSSQQLNVFFLAMPIKSALALFLLVISLPYALHHY 229
>gi|284007396|emb|CBA72803.1| type III secretion apparatus protein SpaR,YscT,HrcT [Arsenophonus
nasoniae]
Length = 256
Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 88/241 (36%), Gaps = 5/241 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L +I R+ ++P LS + + ++ ++ ++ + P+ + +
Sbjct: 14 FLSHLVIIASRIFPIFSIIPFLSNNILSPTIKFPLSLFIAMGVWPYDAYELPQ---LESM 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y +++ E+ +G + L I + LQ TG++I G L +S+ + + + L +
Sbjct: 71 GYLVILLKEVIIGLMIALFISLPFCVLQITGNIIDNQRGATLSSSIDPINGVDTSELANF 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + D SY S+ + + + L+S
Sbjct: 131 FNLFAVTLFLANDGVITTLEIYHHSYRLWLPFSMKFPS--ISNILTFISYAISKAVMLAS 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + ++V I +GLL + PQ+ + I+ + L + +
Sbjct: 189 PLIIIFLVTEIMLGLLGRYAPQLNPFSIALTVKSLICFTILMIYFSSSFSETVLIMQEIS 248
Query: 248 F 248
F
Sbjct: 249 F 249
>gi|238782832|ref|ZP_04626861.1| Flagellar biosynthetic protein fliR [Yersinia bercovieri ATCC
43970]
gi|238716255|gb|EEQ08238.1| Flagellar biosynthetic protein fliR [Yersinia bercovieri ATCC
43970]
Length = 259
Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 97/240 (40%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
I+ F + R+ + P + I + ++ A+ ++++ P + ++ +
Sbjct: 12 IINQFFWPMLRILALFSTAPIFNEKGIDRKTKVALAVIIALLIGPNIPNS---HIEIFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + +G GL +++ + ++ G +I +GL+ T + ++ +
Sbjct: 69 SGIWVGAQQFIIGAAMGLTVQLIFVAVRNAGEIIGMQMGLSFATFYDPAAGGNMPVISRI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ L + H + L S+ +PI + F F L L
Sbjct: 129 LNLLVTLLFLTFNGHLWMLSILSDSFIVLPISENTLNPESFIYLARTAGLVFSSGLMLGL 188
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN+L PQ+ I+ + P + +G + + + + + F + F
Sbjct: 189 PIITLLLCLNLTLGLLNRLTPQLSIFVVGFPLTLSIGMMAMSMIMYTLSPFFENMLEVIF 248
>gi|126463740|ref|YP_001044854.1| type III secretion system inner membrane R protein [Rhodobacter
sphaeroides ATCC 17029]
gi|332559797|ref|ZP_08414119.1| FliR2 [Rhodobacter sphaeroides WS8N]
gi|126105404|gb|ABN78082.1| type III secretion system inner membrane R protein [Rhodobacter
sphaeroides ATCC 17029]
gi|332277509|gb|EGJ22824.1| FliR2 [Rhodobacter sphaeroides WS8N]
Length = 260
Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 120/239 (50%), Gaps = 7/239 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P + D +
Sbjct: 11 LVLLAQDLFRGGFLVFLRVGAAMALLPAFGETSLPVRVRLAAALAFTAIVFPAVSDRVPT 70
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ ++ E +G + G +R++ L LQ G++ + A L G +
Sbjct: 71 YDST-----VAPLLTETAVGLLLGASLRLFVLALQTAGTIAAQATSLA--QLFGSTAGEP 123
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + +++ + GL H Q+ L++SY +P + + ++ + + ++ +F
Sbjct: 124 QPVMTNILTLAGLALAVAGGLHVQIALFLIQSYDILPAARLPDPADVATWGLALVVKSFA 183
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ L+ PF+ +FN+++G++N+ +PQ+ ++F+ P L G + L L+ ++ +
Sbjct: 184 LGFMLAMPFVAASFIFNVALGIVNRAMPQLMVFFVGAPALTFGGLVLLALAAPAVLGIW 242
>gi|170701288|ref|ZP_02892254.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
IOP40-10]
gi|170133811|gb|EDT02173.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
IOP40-10]
Length = 268
Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 85/238 (35%), Gaps = 5/238 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ +M+ P S + + +VR A+ + + + L N
Sbjct: 18 FLIVLGLCSERLMVLMMIFPPTSDNVVQGRVRTALALLWGSFVA---YGQRGLLEQGNAT 74
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G G + G+ + G N S + ++L
Sbjct: 75 ILVGIGLKEALIGVGLGFAASTVFWAAESVGTYVDDLTGFNQLQMQNPSQGQQTSLTSTL 134
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRL 185
+ + A W + + A+ +SY P+G G S + + + +L
Sbjct: 135 LSQFAIAAFWCLGGMTFLLGAIYESYTWWPLGSLAPAGGSVLESFVLLKTDSLMETVAKL 194
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++P + ++ +I G K+ ++ + ++ P L L L L I + Q
Sbjct: 195 ATPMMLMLLLIDIGFGFTGKVSQKLDLPSLAQPVKGALTILMLALMAAIFIDQVRDQL 252
>gi|260893862|ref|YP_003239959.1| type III secretion system inner membrane R protein [Ammonifex
degensii KC4]
gi|260866003|gb|ACX53109.1| type III secretion system inner membrane R protein [Ammonifex
degensii KC4]
Length = 255
Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 52/245 (21%), Positives = 100/245 (40%), Gaps = 3/245 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + + + L+ R+ + P L++ +P+ RL AM+ S+ + P L
Sbjct: 1 MPEALAELYLLYLLVWARLLGFTLAFPPLALPGLPVLWRLGVAMSLSLFVTPLLPPDRPF 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
++ E LG G + + L+ G ++ +G + + +
Sbjct: 61 SG--GAWEWALTWAGEFTLGLGMGFVAGLVFQALRVAGQLMGLQMGFGMAELLT-LGGVP 117
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
ET L ++G + + D + + ALV+SY +P+G G V ++
Sbjct: 118 ETMLAEFFFLLGTVLFFTTDAYQYLIEALVRSYEVLPLGGAAVKGGAIWLTVKLVGGMLA 177
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L+L++P L ++ + S+GLL ++VPQI ++ + P IG L L L +
Sbjct: 178 TALQLAAPVLAVTVLIDASLGLLVRMVPQINVFMLGFPLKIGASLLLLGLLATTLGTVIG 237
Query: 241 HSFLY 245
Sbjct: 238 RLLQE 242
>gi|84502406|ref|ZP_01000542.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597]
gi|84389218|gb|EAQ02015.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597]
Length = 250
Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 4/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L+ R+G+ +M LPG S++ ++ RL A+ S+V+ P + + +
Sbjct: 9 AQFLATALVFGRIGAAMMFLPGFGESFVFVRHRLAAAVLLSLVITPLVAQGPVPSSPTD- 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ + VE+ LG GL RV +Q G+ I GL+ + I T + +
Sbjct: 68 --LVRAMAVEVTLGIWIGLAARVLLTAMQVAGAQIGMVSGLSNAFAPDIGSFQGSTLIAT 125
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + ++ D HH + AL++SY T P G L G++ QT I L ++
Sbjct: 126 ALLLGAVAVIFAADIHHLIIEALIESYFTFPPG-LLMPGDLAEQMAMAAQTALHIGLSVA 184
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+PF +V N+ +GL N+++P +P++F++ P LI G L L++ + F F+
Sbjct: 185 APFYVMGVVLNVGLGLTNRMLPSLPVFFVAAPVLIAAGLFVLVLAVPTAIRTFMTRFVE 243
>gi|188581881|ref|YP_001925326.1| flagellar biosynthetic protein FliR [Methylobacterium populi BJ001]
gi|179345379|gb|ACB80791.1| flagellar biosynthetic protein FliR [Methylobacterium populi BJ001]
Length = 258
Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/242 (23%), Positives = 122/242 (50%), Gaps = 1/242 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + L RVG+ +ML+PGL I ++RL A+ ++VLLP + +
Sbjct: 5 LDLLLPGLAAAFLLTFARVGTLMMLMPGLGEQLIAARLRLALALLMTLVLLPTVRPLLPT 64
Query: 61 -QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ L+ E+ +G + GL +R+ LQ G+VIS +GL+ ++ +
Sbjct: 65 GSGALAAPSVIGLLFGEILIGLMLGLCVRMILAALQTAGTVISQQLGLSYAMTVDPTMGG 124
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ + + + ++G+ + D HH A+ +SY +P + ++ F
Sbjct: 125 QQAAIGNFLALLGVTLILATDLHHVALEAIGRSYVLLPPSGVPAMADAAKLALDAFSRGF 184
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ +R+S PF+ F I+FN+ +G+L++L+PQ+ ++F++ P + +G + ++ +I+ F
Sbjct: 185 ALAVRISGPFIVFGILFNLGLGVLSRLMPQLQVFFLAVPASVLIGMMLFVGALGLIMGLF 244
Query: 240 SH 241
Sbjct: 245 LD 246
>gi|77464898|ref|YP_354402.1| flagellar biosynthesis pathway, component FliR [Rhodobacter
sphaeroides 2.4.1]
gi|77389316|gb|ABA80501.1| Flagellar biosynthesis pathway, component FliR [Rhodobacter
sphaeroides 2.4.1]
Length = 260
Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 119/239 (49%), Gaps = 7/239 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P + D +
Sbjct: 11 LVLLAQDLFRGGFLVFLRVGAAMALLPAFGETSLPVRVRLAAALAFTAIVFPAVSDRVPT 70
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ ++ E +G + G +R++ L LQ G++ + A L G +
Sbjct: 71 YDST-----VAPLLTETAVGLLLGASLRLFVLALQTAGTIAAQATSLA--QLFGSTAGEP 123
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + +++ + GL H Q+ L++SY +P + ++ + + ++ +F
Sbjct: 124 QPVMTNILTLAGLALAVAGGLHVQIALFLIQSYDILPAARLPEPADVATWGLALVVKSFA 183
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ L+ PF+ +FN+++G++N+ +PQ+ ++F+ P L G + L L+ ++ +
Sbjct: 184 LGFLLAMPFVAASFIFNVALGIVNRAMPQLMVFFVGAPALTFGGLVLLALAAPAVLGIW 242
>gi|150020742|ref|YP_001306096.1| flagellar biosynthetic protein FliR [Thermosipho melanesiensis
BI429]
gi|149793263|gb|ABR30711.1| flagellar biosynthetic protein FliR [Thermosipho melanesiensis
BI429]
Length = 254
Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/231 (17%), Positives = 92/231 (39%), Gaps = 4/231 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ +++ R+ ++ P LS +IP V++ ++ S ++LP T +
Sbjct: 8 ETQFLNWGMLISRITGMFIITPLLSGRFIPTTVKVFLVLSLSYMMLP---QTNSIPLNTP 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + +G GL+ + G ++ G L TSM +
Sbjct: 65 VIHIVLSLTNNFIVGFAMGLMAFMILGAFSIAGELLGVESGFGLATSMDP-TMEESPIIG 123
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ + ++ H V+ A++ S P+ + N F I L++
Sbjct: 124 QFVFLLAIFVFISLNGHLVVYEAILDSIKIFPLDLDFLDFNFTKFITTKFVEMFFIALKI 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
P + + + N+ +G+L++LVPQ+ ++ + P L L + +
Sbjct: 184 GLPVIGYMFIINVLLGILSRLVPQMNVFMVGIPLKSLLVFLIFLGMVPLWA 234
>gi|315301908|ref|ZP_07872921.1| flagellar biosynthesis protein FliR [Listeria ivanovii FSL F6-596]
gi|313629724|gb|EFR97844.1| flagellar biosynthesis protein FliR [Listeria ivanovii FSL F6-596]
Length = 253
Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 4/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ CR+ S + P L +IP V++ F MA SI + + D+
Sbjct: 4 EFFLAVVIVFCRIASFLFFFPLLKGRHIPNSVKVIFGMAISIPVATVV----DVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + + L+KS+ L F+ L + ++
Sbjct: 120 ILDTFFVVIFLSLQGLDYLIFYLMKSFEFTASVSILFEKGFIDLFLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235
>gi|289678969|ref|ZP_06499859.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
syringae FF5]
Length = 199
Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 82/188 (43%), Gaps = 1/188 (0%)
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
L+ ++ +G GL ++++ G +IST +G+ + + ++ +
Sbjct: 3 PPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGV 62
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ + ++ L ++ H V LV+S+ T+P+G L N + N L
Sbjct: 63 SSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNNFWE-LANGLGWAL 121
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
LRL P + ++ NI+ G++ + PQ+ I+ I P + LG + L +++ ++ Q+
Sbjct: 122 ASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDMLNQY 181
Query: 240 SHSFLYGF 247
Sbjct: 182 QPIATQAL 189
>gi|161614162|ref|YP_001588127.1| hypothetical protein SPAB_01904 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363526|gb|ABX67294.1| hypothetical protein SPAB_01904 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 215
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 79/197 (40%), Gaps = 1/197 (0%)
Query: 44 MAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVIST 103
M+ + +LP ++ + + + LV E+ +G + G V + G ++ T
Sbjct: 1 MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT 60
Query: 104 AIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN 163
G + T + + L + ++ + L +SY +P G+ L
Sbjct: 61 LRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLL 120
Query: 164 FG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIG 222
F +T + + + S P + ++ ++++GLLN+ Q+ ++F S P
Sbjct: 121 FDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSI 180
Query: 223 LGSLFLCLSIEIIVYQF 239
L L L +S ++ +
Sbjct: 181 LVLLTLLISFPYALHHY 197
>gi|260429506|ref|ZP_05783483.1| flagellar biosynthetic protein FliR [Citreicella sp. SE45]
gi|260420129|gb|EEX13382.1| flagellar biosynthetic protein FliR [Citreicella sp. SE45]
Length = 248
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 110/236 (46%), Gaps = 3/236 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ S ++ R+G+ + LPGL IP++VR+ A+ + +L + + L A
Sbjct: 8 LWSGLIVFLRIGAMMASLPGLGEQIIPVRVRMVLALVLTAAVLSAVLPGMALPPPGLGA- 66
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ V+ E G GL +R++ LQ GS+ + + L +G S + + L+
Sbjct: 67 LARAVLTETVNGLAIGLWLRLFIHALQTAGSIAAQSTSLA--QLLGNSAADPMPAIGHLL 124
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L L FH + +V SY +P + + I + + +F++ L++P
Sbjct: 125 TVAALALLMTTGFHVKAAAFVVLSYDLLPAMRFPDPSMIAQAGRGQIARSFLLAFTLAAP 184
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
F+ ++N+++G +NK +PQ+ + F+ P + L L+ +++ + +
Sbjct: 185 FVILSALYNLTLGFINKAMPQLMVAFVGAPVITLGSIALLLLTAPVMLSVWLAAID 240
>gi|33596845|ref|NP_884488.1| putative type III secretion protein [Bordetella parapertussis
12822]
gi|33573546|emb|CAE37537.1| putative type III secretion protein [Bordetella parapertussis]
Length = 266
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 84/234 (35%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + +L + R+ + ++ LP + ++P +R ++++P L +
Sbjct: 12 VFLGTLAMTQPRILAAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQYAALDI-GW 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ E +G G L + + G VI G +L + +PL
Sbjct: 71 PRLLALLAKEAMVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAIPNPATGNDSSPLGI 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLR 184
L + ++ L S+G I ++ +L
Sbjct: 131 LFNLGFMVFFLTAGGFGLFATMLYDSFGLWNIWAWWPSMPAQGAVRMLDQFSGFAARVLL 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L+SP + + + + L+++ PQ+ ++F++ P L L L L + +
Sbjct: 191 LASPAIVAMFLAELGLALISRFAPQLQVFFLALPVKSALVLLVLVLYMATLFQY 244
>gi|260574395|ref|ZP_05842399.1| type III secretion system inner membrane R protein [Rhodobacter sp.
SW2]
gi|259023291|gb|EEW26583.1| type III secretion system inner membrane R protein [Rhodobacter sp.
SW2]
Length = 259
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 118/242 (48%), Gaps = 6/242 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ ++ + FL++ RVG+ + LLP +P++VRL A+AF+ ++ P + +
Sbjct: 16 QDLLWTGFLVLLRVGAAMALLPAFGEQSVPVRVRLVLALAFTAIVAPAVATEVVP----L 71
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + E+ G + G+ +R++ LQ G++ + A L+ + + + +
Sbjct: 72 AGSIALPLATEVMAGLIIGIGLRLFIHALQIAGAIAAQAASLS--QLFAGAGAEPQPAIG 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+L+ + GL + H ++ ++SY P G+ N ++ + + F + L
Sbjct: 130 NLLTMAGLALAVMAGLHVRMAELFIQSYQVFPAGRLPNSADLADWGLFQIGRVFSLGFVL 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+SPF+ +++N+++G++N+ +PQ+ + F+ P L G L + + + +S +F
Sbjct: 190 ASPFVIASLIYNVALGIINRAMPQLMVAFVGAPALTLGGLALLAIVTPLGLMLWSQAFDA 249
Query: 246 GF 247
Sbjct: 250 FL 251
>gi|238764054|ref|ZP_04625009.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia kristensenii
ATCC 33638]
gi|238697725|gb|EEP90487.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia kristensenii
ATCC 33638]
Length = 260
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 97/235 (41%), Gaps = 3/235 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +L L + R +++LP + + +R A ++ + P + T L
Sbjct: 6 HWLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNSVVFAIALPVTPLFFATTLLHQGNL 65
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
++ L + EL +G + G + + + G +I T G + T S + +
Sbjct: 66 SGWFWLLCI-ELIIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLR 184
L I + + + V AL SY +P G + + + + + + L
Sbjct: 125 VLFTQILTVLFLISGGFNLVLLALYGSYDILPAGSGIQPTSAMLQFLQSEWRLMYELCLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P + ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ +
Sbjct: 185 FALPAMLVMVLADLSLGLINRSSQQLNVFFLAMPIKSALALLLLLISLPYALHHY 239
>gi|254467056|ref|ZP_05080467.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium Y4I]
gi|206687964|gb|EDZ48446.1| flagellar biosynthetic protein FliR [Rhodobacterales bacterium Y4I]
Length = 259
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 116/239 (48%), Gaps = 5/239 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ RV + + +LP + Y+P +V+L A AF+ V+ P L + N A
Sbjct: 18 FWHAAIVFLRVAAMVSVLPAMGELYVPARVKLAVAAAFTFVVAPALPAFPEPDNVFAYAR 77
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ + E +G G+ +R++ L LQ G++ + A L+ +G + L +++
Sbjct: 78 FA---VTEAIIGLALGIGVRIFVLALQTAGAMAAQATSLS--QVLGGIGAEPMPALGAVL 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
I G+ ++ H +V L+ SY P G+ + V + +F + L++P
Sbjct: 133 MISGVTLATMMGLHVRVAELLIGSYRMFPAGEFPVAAGLTEWGVFRVSQSFSLAFTLAAP 192
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
F+ +++N+++G++N+ +PQ+ + + P + +G L + +I+ +S + + F
Sbjct: 193 FVITAVIYNLALGVINRAMPQLMVAMVGAPVITLMGLFILMVGSPVILDVWSRALMTFF 251
>gi|312884593|ref|ZP_07744297.1| type III secretion protein SpaR/YscT/HrcT [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367905|gb|EFP95453.1| type III secretion protein SpaR/YscT/HrcT [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 260
Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 93/241 (38%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGL-SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +L L + R +++LP + +R + F++ +P + + +
Sbjct: 6 HYVPTLALCMMRPLGMMLMLPLFKGGAMGSGLIRNTLVLMFALPTIPLMHTQSADFSQMP 65
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + E+ +G + G + + G VI T G ++ T + L +
Sbjct: 66 MSGLILVYGEEVIIGLIVGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSVFG 125
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLR 184
I + V + + AL SY TIP L N+ S + Q + L
Sbjct: 126 MFFTQILSVLFLVTGGFNALLSALYLSYSTIPPDSVLSFNNNLLSFISDQWQMMSDMCLS 185
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ P + I+ + ++GL+N+ V Q+ ++F+S P L L +S+ + +
Sbjct: 186 FALPAMVVMIMVDAALGLVNRSVEQLNVFFLSMPIKSVLVVFLLLVSLNFALSHYLEQIN 245
Query: 245 Y 245
Sbjct: 246 Q 246
>gi|163744324|ref|ZP_02151684.1| flagellar biosynthesis protein R [Oceanibulbus indolifex HEL-45]
gi|161381142|gb|EDQ05551.1| flagellar biosynthesis protein R [Oceanibulbus indolifex HEL-45]
Length = 251
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 3/237 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+M F++ R+GS ++ +PG + + +P + RL F + S L P +
Sbjct: 11 LMGYFVVFARIGSALLFMPGFAETSVPTRHRLFFGLILSATLYPVTG--LGPVAEDRPGA 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ E+ +G GL+ R LQF G ++ GL + I T + +++
Sbjct: 69 LLLIFGSEITVGLWIGLVARTLLSALQFAGYQMALMSGLANALAPNIGAFEGATSMAAML 128
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
I ++V D HH + +L+ SY G + ++ F Q + + L +++P
Sbjct: 129 LIGATALIFVTDLHHLIIESLLMSYQVFIPGTFML-ADLTDQFARATQVSLYLGLSIAAP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
F +V N+ +GL N+++ + ++FI+ P LI G + L++ ++ F F
Sbjct: 188 FYVAGLVLNVGMGLANRMMASLQVFFIAQPLLIAAGLALMVLAVPTMMRGFLEPFAE 244
>gi|33593238|ref|NP_880882.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|29603236|emb|CAC79581.1| bscT [Bordetella pertussis Tohama I]
gi|33563613|emb|CAE42514.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|332382647|gb|AEE67494.1| putative type III secretion protein [Bordetella pertussis CS]
Length = 266
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + +L + R+ + ++ LP + ++P +R ++++P L + +
Sbjct: 12 VFLGTLAMTQPRILTAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQYAALDI-DW 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ E +G G L + + G VI G +L + + +P+
Sbjct: 71 PRLLALLAKEAMVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAILNPATGNDSSPMGI 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLR 184
L + ++ L S+G I ++ +L
Sbjct: 131 LFNLGFMVFFLTAGGFGLFATMLYDSFGLWNIWAWWPSMPAQGAVRMLDQFSGFAARVLL 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L+SP + + + + L+++ PQ+ ++F++ P L L L + +
Sbjct: 191 LASPAIVAMFLAELGLALISRFAPQLQVFFLALPVKSALVLFVLVLYMATLFQY 244
>gi|167905063|ref|ZP_02492268.1| Flagellar biosynthesis pathway, component FliR [Burkholderia
pseudomallei NCTC 13177]
Length = 258
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 92/228 (40%), Gaps = 4/228 (1%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
CR+ + + P + S +P ++R+ A+ +++ LP + + V A +
Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVD---PVAIPVFSARGALAAA 74
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
++ +G + G+L G ++++ +GL + + ++ + + +L
Sbjct: 75 EQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASIL 134
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ID H V L S+ P+G ++ ++ F L++P +F +
Sbjct: 135 LFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSL-KPLAYQAAWLFSTTTLLAAPLVFATV 193
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
V I L++ P I ++ + + G L L ++ + ++
Sbjct: 194 VLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYASM 241
>gi|42525572|ref|NP_970670.1| flagellar biosynthetic protein FliR [Treponema denticola ATCC
35405]
gi|13122808|gb|AAK12644.1|AF232219_3 FliR [Treponema denticola]
gi|41815583|gb|AAS10551.1| flagellar biosynthetic protein FliR [Treponema denticola ATCC
35405]
Length = 264
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 3/238 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L R+ + +M P +SM + ++ A + ++ P+ + N + Y
Sbjct: 14 FLLAAVRIFAILMTSPLMSMRNVSRIAKVALAGLTAFMVTPYAYPNFGNLNAFSLEYLLL 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L+ L + G I + G S +G + + I
Sbjct: 74 LLGEGLIG-VLTGFFISILFSTFSTAGQFFSFQMGFGASGVFDALAQVENPLVGQYFNFI 132
Query: 132 GLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPF 189
+L I+ ++KS + L + + + + F+ + ++ P
Sbjct: 133 AVLIFLRINGFQRLFLGGIMKSIEHVNCFLFLERQEELSTYLLGAVGNLFLNAMIIALPV 192
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ I+ +I++GLL K PQ+ + P I L L++ + F GF
Sbjct: 193 MGTLILIHITMGLLTKAAPQMNLLSEGFPITILTAFFILALALPFFINTFEIILEKGF 250
>gi|183600582|ref|ZP_02962075.1| hypothetical protein PROSTU_04168 [Providencia stuartii ATCC 25827]
gi|188019859|gb|EDU57899.1| hypothetical protein PROSTU_04168 [Providencia stuartii ATCC 25827]
Length = 267
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 86/233 (36%), Gaps = 5/233 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTID 59
M + + +++L + R+ + LP LS + ++ C + + L P L
Sbjct: 12 MYFTFQEGLITLAIAWVRIAPTLFFLPFLSNKLLSSGMIKNCVTVYIVLGLWPLLSTH-- 69
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
R + ++V+ EL +G + L++ + + G +I T G + + + +
Sbjct: 70 -NLQEERVGFMEIVLYELAVGLITALILALPFMIANIIGELIDTQRGETISSIVDPASGS 128
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L I I + + +SY +P + N + +
Sbjct: 129 EASELAVFISYIVCMVFLSQGGMLLLVKTFAQSYQLLPFAAGFSQFNSL-ALGEWMNQMV 187
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
+ + L++P L + ++GL ++ PQ+ + +S + L
Sbjct: 188 VKAIILAAPILITLFISEAALGLYSRFCPQLNAFSLSLTIKSIIAFAVFLLYF 240
>gi|117928067|ref|YP_872618.1| type III secretion system inner membrane R protein [Acidothermus
cellulolyticus 11B]
gi|117648530|gb|ABK52632.1| type III secretion system inner membrane R protein [Acidothermus
cellulolyticus 11B]
Length = 259
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/240 (14%), Positives = 89/240 (37%), Gaps = 3/240 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++ L R + ++++P IP V+ FAMA + + L +
Sbjct: 9 LLVAFLLATIRTSAWLVVVPIFGTRIIPGMVKAAFAMALAFPVSGALAPLAPAPQVL--- 65
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ + G G++ ++ G ++ G +L + ++ L +
Sbjct: 66 PLCTAILQNVAAGLAMGVVTLTLFAAVRAAGGLLDYFGGFSLTYAFDPMAVQNDSVLARM 125
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++ + L+ + + L+ SY IP+ + + + + L ++
Sbjct: 126 YDLLAVTLLFAGGGYLLLLKGLLSSYTVIPLASSHPARILAELATVNIGSFAVSCLEIAG 185
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P L +V +I +GLL K+ P + ++ + P I + + + + +
Sbjct: 186 PLLAVLVVADIGLGLLTKIAPALNVFSLGFPLKILVTLTLVGGTFVALPHAVDALVERIL 245
>gi|158422279|ref|YP_001523571.1| flagellar biosynthesis protein FliR [Azorhizobium caulinodans ORS
571]
gi|158329168|dbj|BAF86653.1| type III secretion system inner membrane R protein [Azorhizobium
caulinodans ORS 571]
Length = 249
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 80/246 (32%), Positives = 135/246 (54%), Gaps = 2/246 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQ 61
I ++ ++S FL+ CR+GSCIM++PGLS +P++VRL A+A S+ +LP ++D ++
Sbjct: 2 IPLDVSILSAFLVFCRIGSCIMMMPGLSGYRLPVRVRLLLAVAVSLAILPLMYDDLVNFI 61
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
N A + E+ G + G L R++ L LQ I+ IGL+ + D
Sbjct: 62 RNANSAQLLLSIGTEMATGAIIGTLARIFYLMLQMMLVAIAQFIGLSSPMGL-PEDGEVL 120
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
L +L+ + +++ D H+++ L+ SY IP+G + L MI
Sbjct: 121 PSLATLMILAATTMMFLTDQHYEMLRGLIASYRQIPVGVGFGGRGALIQASDQLSAALMI 180
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+RL+SPFL + ++ N ++GL+NKLVPQIP+YFIS P+++ G + L + ++ FS
Sbjct: 181 AMRLASPFLIYSLIINFAVGLINKLVPQIPVYFISAPFILLGGLILLYGLSDQMLTAFSA 240
Query: 242 SFLYGF 247
+F
Sbjct: 241 AFNLFL 246
>gi|46562155|ref|YP_009142.1| type III secretion inner membrane protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|46447692|gb|AAS94358.1| type III secretion inner membrane protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|311235486|gb|ADP88339.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris
RCH1]
Length = 271
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 94/243 (38%), Gaps = 6/243 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---LQNFVN 65
M++L + + R+ + P + + + Q+RL A + L P + + + +
Sbjct: 16 MLALLVGMPRLFVIAQVAPFMGGNVVSGQLRLVLVFACYLPLHPVIVGQLPHGHIFDPSL 75
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+Y L++ E LG + GLL + +Q G +I G ++ +P
Sbjct: 76 MGHYGALLLKETLLGLLMGLLAGMAFWAVQSAGFLIDNQRGASMAEESDPMSGEQTSPTG 135
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG---NIFSSFVNMLQTTFMIM 182
+ + + + + L SY P+ ++ F + M
Sbjct: 136 AFLLQVMMYLFYASGAFVAFLGLLYTSYEVWPVPSLTPLSWRADLPLYFAGKVAWLMTHM 195
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
L L+ P + ++ ++S+GL+N+ Q+ +Y ++ P + SL L L +V
Sbjct: 196 LLLAGPIMVACLLADLSLGLVNRFASQLNVYVLAMPVKSAVASLLLLLYFGALVAHAPGL 255
Query: 243 FLY 245
+
Sbjct: 256 YAD 258
>gi|167840295|ref|ZP_02466979.1| type III secretion inner membrane protein SctT, putative
[Burkholderia thailandensis MSMB43]
Length = 294
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 89/242 (36%), Gaps = 5/242 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L L R+ + +LP + + + +R A + + + I ++
Sbjct: 18 GFIVLLALSSERLLVIMSILPATADTVMKGPMRSGAAAVWCLFIACGQQALIPQ---LHG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A+ + E +G V G+ + G+ + G N S + + +
Sbjct: 75 AFLVIACLKEAVIGLVLGIAASTVFWAAEAIGTYVDDVAGFNNVQMQNPSSGTQTSLMAT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-R 184
L G + + + W++ + ALV+SY P+G + +F M M+ R
Sbjct: 135 LFGQLTIASFWLLGGMTFLLGALVESYAWWPLGSFDPVPAPLLEAFAQARIDMLMNMIAR 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + ++ ++ + + + ++ + + P + L + + V +
Sbjct: 195 IATPMMAMLVLVDLGLAFVARSAQKLDLMSVGQPLKGAIAVLIVAVLAGNFVTEMRGQIS 254
Query: 245 YG 246
Sbjct: 255 LA 256
>gi|83944180|ref|ZP_00956636.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
gi|83955119|ref|ZP_00963775.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
gi|83840448|gb|EAP79621.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
gi|83845047|gb|EAP82928.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
Length = 251
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 3/240 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ S F++ R+G+ +M +PG IP++ RL A+ S+ LLP L +
Sbjct: 8 STLFFSFFVVFARIGTALMFMPGFGEVQIPVRPRLSLAVLISLSLLPLTPIASALPDSAV 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A + L+ E+ +G GL R+ LQF G + GL T +
Sbjct: 68 TAVF--LLGAEVLIGLWIGLCARILLSALQFAGFQVGQVSGLANAFGPSFGSFEGATMVA 125
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+L+ + + ++V D HH + AL+ SY P GQ + ++ + + + I +
Sbjct: 126 TLLLMSAVTMIFVTDTHHLIIRALLASYQVFPPGQFVL-ADLADQILRVASASLYIGTAI 184
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++PF ++ N+ +GL N+++PQ+P++F++ LIG G L L +++ ++ F F
Sbjct: 185 AAPFFVMGVILNLGMGLANRMMPQLPVFFVAASLLIGAGLLILAIALPAMLDYFLVRFQE 244
>gi|85059285|ref|YP_454987.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
gi|84779805|dbj|BAE74582.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
Length = 256
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 1/204 (0%)
Query: 45 AFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTA 104
+++P L + + V EL +G + G + + G +I T
Sbjct: 42 VLLALIIPMLPLVYKQAAPLRGWGLLERVPGELLIGVILGFCAAIPFWAVDMAGFLIDTL 101
Query: 105 IGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-N 163
G + + S ++ + L ++ + + AL SY P G L
Sbjct: 102 RGATMGSVYNPSMAMQTSLFGLLFSQFLCALFFLGGGINLLLSALYDSYRAFPPGTTLAL 161
Query: 164 FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223
+F + Q + + L S P + I+ ++++GL+N+ Q+ ++F+S P L
Sbjct: 162 DRRLFDFILTQWQLLYCLCLSFSLPAVLSMILADLALGLINRSARQLNVFFLSMPIKSAL 221
Query: 224 GSLFLCLSIEIIVYQFSHSFLYGF 247
L L +S+ + + +
Sbjct: 222 ALLLLLVSLPYAFHHYLQETETLY 245
>gi|221640819|ref|YP_002527081.1| Type III secretion system inner membrane R protein [Rhodobacter
sphaeroides KD131]
gi|221161600|gb|ACM02580.1| Type III secretion system inner membrane R protein [Rhodobacter
sphaeroides KD131]
Length = 260
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/239 (22%), Positives = 122/239 (51%), Gaps = 7/239 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + + +FL+ RVG+ + LLP + +P++VRL A+AF+ ++ P L D + +
Sbjct: 11 LVLLAQDLFRGVFLVFLRVGAAMALLPPFGETSLPVRVRLAAALAFTAIVFPALSDRVPI 70
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + E +G + G +R++ L LQ G++ + A L G +
Sbjct: 71 YDGSLAPLLA-----ETAVGLLLGASLRLFVLALQTAGTIAAQATSLA--QLFGSTAGEP 123
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + +++ + GL V H Q+ L++SY +P + + ++ + + ++ +F
Sbjct: 124 QPVMTNILTLAGLALAVVGGLHVQIALFLIQSYDILPAARLPDPADVATWGLTLVVKSFA 183
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ L+ PF+ +FN+++G++N+ +PQ+ ++F+ P L G + L L+ ++ +
Sbjct: 184 LGFMLAMPFVAASFIFNVALGIVNRAMPQLMVFFVGAPALTFGGLVLLALAAPAVLGIW 242
>gi|120586864|ref|YP_961209.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris
subsp. vulgaris DP4]
gi|120564278|gb|ABM30021.1| type III secretion protein SpaR/YscT/HrcT [Desulfovibrio vulgaris
DP4]
Length = 271
Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 6/243 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID---LQNFVN 65
M++L + + R+ + P + + I Q+RL A + L P + + + +
Sbjct: 16 MLALLVGMPRLFVIAQVAPFMGGNVISGQLRLVLVFACYLPLHPVIVGQLPHGHIFDPSL 75
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+Y L++ E LG + GLL + +Q G +I G ++ +P
Sbjct: 76 MGHYGALLLKETLLGLLMGLLAGMAFWAVQSAGFLIDNQRGASMAEESDPMSGEQTSPTG 135
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG---NIFSSFVNMLQTTFMIM 182
+ + + + + L SY P+ ++ F + M
Sbjct: 136 AFLLQVMMYLFYASGAFVAFLGLLYTSYEVWPVPSLTPLSWRADLPLYFAGKVAWLMTHM 195
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
L L+ P + ++ ++S+GL+N+ Q+ +Y ++ P + SL L L +V
Sbjct: 196 LLLAGPIMVACLLADLSLGLVNRFASQLNVYVLAMPVKSAVASLLLLLYFGALVAHAPGL 255
Query: 243 FLY 245
+
Sbjct: 256 YAD 258
>gi|33600619|ref|NP_888179.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33568218|emb|CAE32131.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
Length = 266
Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 85/234 (36%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + +L + R+ + ++ LP + ++P +R ++++P L +
Sbjct: 12 VFLGTLAMTQPRILAAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQYAALDI-GW 70
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ E +G G L + + G VI G +L + + +PL
Sbjct: 71 PRLLALLAKEAMVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAILNPATGNDSSPLGI 130
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLR 184
L + ++ L S+G I ++ +L
Sbjct: 131 LFNLGFMVFFLTAGGFGLFATMLYDSFGLWDIWAWWPSMPAQGAVRMLDQFSGFAARVLL 190
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L+SP + + + + L+++ PQ+ ++F++ P L L L L + +
Sbjct: 191 LASPAIVAMFLAELGLALISRFAPQLQVFFLALPVKSALVLLVLVLYMATLFQY 244
>gi|167573415|ref|ZP_02366289.1| type III secretion inner membrane protein SctT, putative
[Burkholderia oklahomensis C6786]
Length = 313
Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 86/242 (35%), Gaps = 5/242 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L L R+ + +LP + + + +R A + + + I +
Sbjct: 18 GFITLLALSSERLLVIMTILPATADNVLKGTLRNGAAAVWCLFVACGQQALIPQ---LRG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A+ + E +G V G+ + G+ + G N S + + +
Sbjct: 75 AFLVIVCTKEAVIGLVLGIAASTVFWAAEAIGTYVDDVAGFNNVQMQNPSTGTQTSLMGT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-R 184
L G + + + W++ + AL +SY P+G + F M M+ R
Sbjct: 135 LFGQLTIASFWLLGGMMFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMIAR 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + ++ ++ + + + ++ + IS P + L + + V +
Sbjct: 195 IATPMMVMVLLIDLCLAFVTRSAQKLDLMSISQPLKGAVAVLIVAVLAGSFVTEMRGQIS 254
Query: 245 YG 246
Sbjct: 255 LA 256
>gi|167566313|ref|ZP_02359229.1| type III secretion inner membrane protein SctT, putative
[Burkholderia oklahomensis EO147]
Length = 328
Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 86/242 (35%), Gaps = 5/242 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L L R+ + +LP + + + +R A + + + I +
Sbjct: 18 GFITLLALSSERLLVIMTILPATADNVLKGTLRNGAAAVWCLFVACGQQALIPQ---LRG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A+ + E +G V G+ + G+ + G N S + + +
Sbjct: 75 AFLVIVCTKEAVIGLVLGIAASTVFWAAEAIGTYVDDVAGFNNVQMQNPSTGTQTSLMGT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-R 184
L G + + + W++ + AL +SY P+G + F M M+ R
Sbjct: 135 LFGQLTIASFWLLGGMMFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMIAR 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + ++ ++ + + + ++ + IS P + L + + V +
Sbjct: 195 IATPMMVMVLLIDLCLAFVTRSAQKLDLMSISQPLKGAVAVLIVAVLAGSFVTEMRGQIS 254
Query: 245 YG 246
Sbjct: 255 LA 256
>gi|332757516|gb|EGJ87851.1| flagellar biosynthetic protein FliR [Shigella flexneri K-671]
Length = 253
Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 79/178 (44%)
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L + ++ +G G ++ ++ G +I +GL+ T + L L ++
Sbjct: 63 LWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPGSHLNMPVLARIMD 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++ LL + H + LV ++ T+PIG E N F + F+ L L+ P
Sbjct: 123 MLALLLFLTFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLALPL 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 183 ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 240
>gi|167724009|ref|ZP_02407245.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei DM98]
gi|167742977|ref|ZP_02415751.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 14]
gi|167820150|ref|ZP_02451830.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 91]
gi|167828526|ref|ZP_02459997.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 9]
gi|167849984|ref|ZP_02475492.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei B7210]
gi|167898590|ref|ZP_02485991.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 7894]
gi|167906933|ref|ZP_02494138.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei NCTC 13177]
gi|167915292|ref|ZP_02502383.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 112]
gi|217425322|ref|ZP_03456816.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 576]
gi|254186706|ref|ZP_04893222.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pasteur 52237]
gi|254193813|ref|ZP_04900245.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei S13]
gi|254301614|ref|ZP_04969058.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 406e]
gi|157810820|gb|EDO87990.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 406e]
gi|157934390|gb|EDO90060.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pasteur 52237]
gi|169650564|gb|EDS83257.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei S13]
gi|217391573|gb|EEC31601.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 576]
Length = 265
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 4/232 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L + R+ + + P + VR + F + ++
Sbjct: 12 VTLLAICSVRLYIVMSVFPPTADGLSQGVVRNALVILFGSYVA--YGQPAGFVQTLHGTP 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ E +G V G+ ++ G I G N + TP +L+
Sbjct: 70 LIVTGLREAVIGVVLGIAASTVFWAIEGAGCYIDDLTGYNNVQMTNPARGEQSTPTATLL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLS 186
+ +A W + L +SY PI + V+ + ++ +L+
Sbjct: 130 TQVATVAFWTFGGMTFLLGTLYESYRWWPITLTFPRMPALIEAFAVSQTDSLMQMVTKLA 189
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+P + ++ + + G K ++ + +S P + L L L + V Q
Sbjct: 190 APMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGAVTVLMLALFVGTFVDQ 241
>gi|212711699|ref|ZP_03319827.1| hypothetical protein PROVALCAL_02774 [Providencia alcalifaciens DSM
30120]
gi|212685801|gb|EEB45329.1| hypothetical protein PROVALCAL_02774 [Providencia alcalifaciens DSM
30120]
Length = 264
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 84/233 (36%), Gaps = 5/233 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTID 59
M + + ++ + R+ + LP LS + ++ C ++ + P+L
Sbjct: 12 MYFTFQQGLIKIAFAWLRIAPVMFFLPFLSNKLLNGGIIKNCVVAYLALGMWPYLSTN-- 69
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ S++ + E+ +G V ++ + + G +I T G + + + +
Sbjct: 70 -EINWGEMNISEVFLYEVCIGLVLAFILGLPFMIANVIGELIDTQRGETISSIVDPASGS 128
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L I I + +Q+ +SY +P L
Sbjct: 129 EASELAVFISYIVCMVFLAQGGMYQLANVFAQSYQLLPFAHGFTSFKSLP-LGEWLNKAI 187
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
+ + L++P + + +++GL ++ PQ+ + +S + + L
Sbjct: 188 VNGVILTAPIIVTLFISEVALGLYSRFCPQLNAFSLSLAIKSIIAFIVFLLYF 240
>gi|330443948|ref|YP_004376934.1| YopT tranlocation T [Chlamydophila pecorum E58]
gi|328807058|gb|AEB41231.1| YopT tranlocation T [Chlamydophila pecorum E58]
Length = 289
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 104/234 (44%), Gaps = 7/234 (2%)
Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80
++P L P +++ +++ ++ P + + N+ N + L++ E+ +G
Sbjct: 41 PIFSIVPFLGAKLFPSPIKIGIGLSWLAIIFPKVLMDTRIANYTNEDLFYILLIKEMIIG 100
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
V G ++ Q GS I+ G+ L+ S +P +A W +
Sbjct: 101 IVIGFILAFPFYAAQSAGSFITNQQGIQGLEGSTSPISIEQTSPHGIFYHYFVTIAFWSL 160
Query: 140 DFHHQVFYALVKSYGTIPIGQELNFG------NIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
H +F L++S IPI I+S+ + + Q + ++ ++LS+P
Sbjct: 161 GGHRIIFSLLLQSLEVIPIHNFFPPQLMSLHAPIWSTLIKICQLSLIMTIQLSAPAALAM 220
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ ++ +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + L F
Sbjct: 221 LMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDYFTLAWF 274
>gi|221635442|ref|YP_002523318.1| flagellar biosynthetic protein FliR [Thermomicrobium roseum DSM
5159]
gi|221157870|gb|ACM06988.1| flagellar biosynthetic protein FliR [Thermomicrobium roseum DSM
5159]
Length = 260
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 2/239 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L+V RVG + LLPG +P+ R+ A+ ++ L+PF+ D +
Sbjct: 12 IALFVLVVTRVGLVLSLLPGFGSQAVPLPARVALAVVLALALVPFVP--TDASGLSDPTV 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ + EL G GL + ++ S+I +G L + + + T LN+L
Sbjct: 70 FAVALARELVTGLALGLAVAAVFAAVEMAASLIGYQLGFGLAATFNPAFGMQGTALNTLY 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ L L+ + HHQ+ AL +S +P G + + + + F LR+ P
Sbjct: 130 LALAALVLFGTNGHHQLVGALARSLILLPPGAAAPDVDTPRAVIALTGAMFSDALRIGLP 189
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+V +I +GLLN++VPQ+ ++F+ P I LG L L LS+ ++ H G
Sbjct: 190 IAGSLLVADIGLGLLNRMVPQMSVFFVGLPAKILLGFLVLLLSLPFLLQILVHVSTDGL 248
>gi|313681367|ref|YP_004059105.1| flagellar biosynthetic protein flir [Sulfuricurvum kujiense DSM
16994]
gi|313154227|gb|ADR32905.1| flagellar biosynthetic protein FliR [Sulfuricurvum kujiense DSM
16994]
Length = 254
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 106/243 (43%), Gaps = 3/243 (1%)
Query: 5 PEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
E ++ L+ R G+ M +P S IP+ ++ A F++ + L
Sbjct: 8 SEGRTIAFILLFIRFGALFMAVPIFSHMNIPISIKAAMAFFFTVFFFGAVP---PLHIPT 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ + ++ E+ G G+++++ + F G IS +G +L +++ ++ +
Sbjct: 65 DTLSLTVAILGEMLFGLAVGIVLQLAYHVITFAGGQISFMMGFSLASAIDPQSGVSMPII 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
+ + ++ L+ L + D HH + +S T+P+G L ++F ++ + F++
Sbjct: 125 SQFLSLLALMILLIFDLHHWILLYASQSISTVPLGGFLMTPSLFKYIMHAMTNMFVVGFM 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ P ++ ++ G+L K +PQ + I P I + + L ++ + +
Sbjct: 185 IAFPITALSMLADLIFGMLMKTMPQFNLLVIGMPIKIAVSFVVLMATLGATLMIVTSQTQ 244
Query: 245 YGF 247
+
Sbjct: 245 NAY 247
>gi|332187892|ref|ZP_08389625.1| flagellar biosynthetic protein FliR [Sphingomonas sp. S17]
gi|332012053|gb|EGI54125.1| flagellar biosynthetic protein FliR [Sphingomonas sp. S17]
Length = 257
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 96/245 (39%), Gaps = 2/245 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+S E ++ ++ R+G+ + P IP+ VR+ A A + ++
Sbjct: 6 LSIEPQAWAILFLMIRIGAAFITAPVFGAVSIPLPVRVSLAGAIAFLVNSVHPVVPPPVI 65
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
F V E +G GL+++V +I ++G+N ++ + +
Sbjct: 66 FSLPT--IMSVAAEAIVGLALGLILQVAFTAPLVASELIGGSMGINFAATIDPLNGRSTQ 123
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIM 182
L ++ L +D H + +VKSY +P G+ F + F+
Sbjct: 124 ALGQFFTVMLTLLFLSVDGHLVLVDMIVKSYDALPPGRAWMAPAQFRAIALFGGYAFLAG 183
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
L L+ P F + N+ +G++++ P + ++ + P +G+G + + ++ +
Sbjct: 184 LLLALPVGFLLLCLNLVVGMMSRAAPSLNLFSVGLPAALGVGVIAIAVAFPAMGDYMLVI 243
Query: 243 FLYGF 247
Sbjct: 244 IREAL 248
>gi|167589636|ref|ZP_02382024.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ubonensis
Bu]
Length = 269
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 4/234 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L ++ R+ + ++P + + VR A+ + + P + +
Sbjct: 18 LLYVMPRLLPIMFVVPVFNEQIVTGLVRNGIAVVIAAFVAPAIDPAQVAALP--FLMWCL 75
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
LV E +G + +Q G +I G P + + +
Sbjct: 76 LVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNFV 135
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ + +SY PIG + + V T F M++L++P
Sbjct: 136 AIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFVVRQTDTIFAWMVKLAAPV 195
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ ++ + IGL+ + VPQ+ I+ + P L L + L + ++
Sbjct: 196 VIVLVLVELGIGLVGRSVPQLNIFVFAQPVKSALALLMMVLFLPVVYAALHALL 249
>gi|254193637|ref|ZP_04900069.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei S13]
gi|169650388|gb|EDS83081.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei S13]
Length = 256
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 19 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 73
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 74 AGVALTEAAAGVVLGVALSLPFWVATVVGELIDNQRGATISDSIDPATGVEASALAPFVS 133
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 134 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 192 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 240
>gi|53716464|ref|YP_106124.1| type III secretion system protein BsaY [Burkholderia mallei ATCC
23344]
gi|67641435|ref|ZP_00440214.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
mallei GB8 horse 4]
gi|167004214|ref|ZP_02269981.1| type III secretion system protein BsaY [Burkholderia mallei PRL-20]
gi|167724224|ref|ZP_02407460.1| type III secretion system protein BsaY [Burkholderia pseudomallei
DM98]
gi|167743199|ref|ZP_02415973.1| type III secretion system protein BsaY [Burkholderia pseudomallei
14]
gi|167828745|ref|ZP_02460216.1| type III secretion system protein BsaY [Burkholderia pseudomallei
9]
gi|167850200|ref|ZP_02475708.1| type III secretion system protein BsaY [Burkholderia pseudomallei
B7210]
gi|167898807|ref|ZP_02486208.1| type III secretion system protein BsaY [Burkholderia pseudomallei
7894]
gi|167907135|ref|ZP_02494340.1| type III secretion system protein BsaY [Burkholderia pseudomallei
NCTC 13177]
gi|167915489|ref|ZP_02502580.1| type III secretion system protein BsaY [Burkholderia pseudomallei
112]
gi|217425207|ref|ZP_03456702.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 576]
gi|254175968|ref|ZP_04882626.1| type III secretion system protein BsaY [Burkholderia mallei ATCC
10399]
gi|254200990|ref|ZP_04907355.1| type III secretion system protein BsaY [Burkholderia mallei FMH]
gi|254204954|ref|ZP_04911307.1| type III secretion system protein BsaY [Burkholderia mallei JHU]
gi|52422434|gb|AAU46004.1| type III secretion system protein BsaY [Burkholderia mallei ATCC
23344]
gi|147748602|gb|EDK55677.1| type III secretion system protein BsaY [Burkholderia mallei FMH]
gi|147754540|gb|EDK61604.1| type III secretion system protein BsaY [Burkholderia mallei JHU]
gi|160697010|gb|EDP86980.1| type III secretion system protein BsaY [Burkholderia mallei ATCC
10399]
gi|217391812|gb|EEC31839.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 576]
gi|238522375|gb|EEP85820.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
mallei GB8 horse 4]
gi|243060409|gb|EES42595.1| type III secretion system protein BsaY [Burkholderia mallei PRL-20]
Length = 256
Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 19 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 73
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 74 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 133
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 134 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 192 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 240
>gi|238899255|ref|YP_002924938.1| type III secretion system apparatus protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229467016|gb|ACQ68790.1| type III secretion system apparatus protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 261
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 97/241 (40%), Gaps = 4/241 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L + R +++ P + + +R +A ++ + P + + L +
Sbjct: 7 WLTALGLAMARPLGVLLIFPVFTTHSLGSSLLRNGLLVAIALPITP-ITISSSLIHSHIL 65
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +M+EL +G G + ++ S+I T G + +++ + + +
Sbjct: 66 IHWCFAIMMELVIGVTIGFFAALPFWAIEMAASLIDTMRGATMASAINPTMGMQSSVFGI 125
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLR 184
L + + + + + + SY + G+ +FS F +
Sbjct: 126 LFSQVLSVLFLIAGGFNSLLRVIYGSYDLLYPGEKILFFGEKLFSFIKMQWGLMFELCFN 185
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ P L ++ ++S+GL+N+ Q+ ++F++ P + L +S+ + + +
Sbjct: 186 FALPALLVMLITDLSLGLINRSAQQLNVFFLAMPIKSIMALFLLLISLPFAFHHYLNEIK 245
Query: 245 Y 245
+
Sbjct: 246 H 246
>gi|27550055|gb|AAO18038.1| LscT [Photorhabdus luminescens]
Length = 262
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 95/236 (40%), Gaps = 5/236 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ M++ L++ R+ SC ++ P LS + +R A + ++ P + +
Sbjct: 7 QQQMLAYTLLLPRIMSCFVIFPVLSKQMLGGGLIRNGVACSLALYAYPTVAGNP--LPTL 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ L+ E+ LG + G + + ++ TG +I G + + + S +P
Sbjct: 65 GSLELTLLLGKEVLLGLLIGFIASIPFWAMEATGFIIDNQRGATMASVLNPSLGSQTSPT 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIM 182
L+ + + + AL +SY + P+ Q F +
Sbjct: 125 GLLLTQTLITLFFSGGAFLSLLGALFQSYNSWPVTQFFPQITNQWLHFFYGQFSYLLQLC 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+++P L + + L+++ P + ++ ++ P + SL L + I+++++
Sbjct: 185 ALMAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYIQLLMHH 240
>gi|89897881|ref|YP_514991.1| type III secretion flagellar biosynthesis inner membrane protein
[Chlamydophila felis Fe/C-56]
gi|89331253|dbj|BAE80846.1| type III secretion flagellar biosynthesis inner membrane protein
[Chlamydophila felis Fe/C-56]
Length = 289
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/234 (19%), Positives = 107/234 (45%), Gaps = 7/234 (2%)
Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80
++P L P +++ A+++ ++ P + + + N+++ + L++ EL +G
Sbjct: 41 PIFAIVPFLGGKLFPAPIKIGIALSWVAIIFPKVLMSTHIANYLDDDIFYFLIIKELCIG 100
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
+ G ++ Q GS I+ G+ L+ + + +P +A W+
Sbjct: 101 TLIGFILAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGIFYHYFVTIAFWLS 160
Query: 140 DFHHQVFYALVKSYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
H V L+++ IPI + L ++ + + M Q ++ ++LS+P
Sbjct: 161 GGHRIVLTILLQTLEVIPIHKFLPAEMMSLDAPVWIALIKMCQLCLVMTIQLSAPAAVAM 220
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ ++ +G++N++ PQ+ + ++ + +G LF+ L+ IV Q + L F
Sbjct: 221 LMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFITLAWWFIVKQIDYFTLAWF 274
>gi|325475308|gb|EGC78493.1| FliR [Treponema denticola F0402]
Length = 264
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 3/238 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L R+ + +M P +SM + ++ A + ++ P+ + N + Y
Sbjct: 14 FLLAAVRIFAILMTSPLMSMRNVSRIAKVALAGLTAFMVTPYAYPNFGNLNAFSLEYLLL 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L+ L + G I + G S +G + + I
Sbjct: 74 LLGEGLIG-VLTGFFISILFSTFSTAGQFFSFQMGFGASGVFDALAQVENPLVGQYFNFI 132
Query: 132 GLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPF 189
+L I+ ++KS + L + + + + F+ + ++ P
Sbjct: 133 AVLIFLRINGFQRLFLGGIMKSIEHVNCFLFLERQEELSTYLLGAVGNLFLNAMIIALPV 192
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ I+ +I++GLL K PQ+ + P I L L++ + F GF
Sbjct: 193 MGTLILIHITMGLLTKAAPQMNLLSEGFPITILTAFFILALALPFFINTFEIILEKGF 250
>gi|224825750|ref|ZP_03698854.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002]
gi|224601974|gb|EEG08153.1| flagellar biosynthetic protein FliR [Lutiella nitroferrum 2002]
Length = 259
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 103/236 (43%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ +L+ CR + + + P P +VR+ A+A ++ LP L + F
Sbjct: 10 QLLPALWWPFCRFLAALAVAPLSGEGMTPARVRIGAALALAVASLPALRGMPAIDPFS-- 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y + + + +G + GL ++ L G ++S+ +GL++ + + +++
Sbjct: 68 LYGIAVAVEQAIIGLIFGLAFQLVMAVLSLLGFLVSSQMGLSMAVMNDPGNGNSSDVVST 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ ++G + + +D H + + S+ P+G ++ + N + + L+
Sbjct: 128 LLYLLGAMVFFAVDGHLVLIQVVYTSFKAWPVGSGID-ALSLQTLANSVGWVLAAAILLA 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P +F V I GL+N++ P + ++ + P + G L L + + Q+
Sbjct: 187 LPAVFATFVVQIGFGLINRVAPALNLFSLGFPVVTLFGLGTLGLIVRFVPEQYLRL 242
>gi|315654596|ref|ZP_07907502.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC
51333]
gi|315491060|gb|EFU80679.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC
51333]
Length = 248
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/238 (14%), Positives = 83/238 (34%), Gaps = 6/238 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L R + P + I +V+ A + +
Sbjct: 6 ALFTAFALASVRATVFLAFCPPFNNRAISGRVKAMLGAALGFACMGRIGP------VDRS 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++++ +G +++R+ LQ GS+I G + + +
Sbjct: 60 DVFLFELLIQALIGFAMAVMVRIIVATLQMAGSLIDFEGGFAMAQAFDPLTMTNQATFGR 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + L+ + + + L +S+ +PIG + GN V + + ++
Sbjct: 120 VYELSAMAMLFATNGYQLLILGLARSFNAMPIGAAFDMGNYADRLVFRFGELMVASIEIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
P L + ++ +GLL K+ P + + + P I + + L + +I
Sbjct: 180 GPLLLVLFLTDMGLGLLTKVAPAMNAFTLGFPLKIMMTAFTAPLIMVVIPQVVDKLMD 237
>gi|227873533|ref|ZP_03991778.1| possible flagellar biosynthesis protein FliR [Oribacterium sinus
F0268]
gi|227840623|gb|EEJ51008.1| possible flagellar biosynthesis protein FliR [Oribacterium sinus
F0268]
Length = 250
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 2/241 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ IV R+ I P + P + R S + + + +
Sbjct: 1 MLVLFSFIVMRMTGAIAFNPVFGRTDYPRRARAALIFMLSAICYVHIGGELH-HMPGSIL 59
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y +++ ELF+G G + + L+F S++ ++GLN+ T L
Sbjct: 60 EYGFMLLKELFVGFCLGFAMELAFTCLRFATSIMDFSMGLNMAQVFDPQSGSQATVSTGL 119
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-ELNFGNIFSSFVNMLQTTFMIMLRLS 186
+L + +D H + L ++ T P G + + +++ + + L L+
Sbjct: 120 FYGFMMLLFFSMDGHLRFLELLFQTIDTHPFGGISIKLLLMPKLMLSLFVASMKMGLELA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + ++ I++G+L +++PQI I+ ++ I LG L + I + +
Sbjct: 180 FPIMGLELMSEIALGILMRIIPQINIFAVNFQLKIILGFSMLYFLLIPITDKMKDFIAFA 239
Query: 247 F 247
F
Sbjct: 240 F 240
>gi|239628944|ref|ZP_04671975.1| bifunctional flagellar biosynthesis protein FliR/FlhB
[Clostridiales bacterium 1_7_47_FAA]
gi|239519090|gb|EEQ58956.1| bifunctional flagellar biosynthesis protein FliR/FlhB
[Clostridiales bacterium 1_7_47FAA]
Length = 261
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 1/247 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M S L+ R+G I + P + +P+ VR A+A S+++ P
Sbjct: 1 MDSSVLEYFDIFLLVFARMGGMIFINPVFARKGVPLMVRTGLALALSLLIAPAARAGGQA 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ ++ ++ EL LG G + +++ L G ++ TA GL + M + +
Sbjct: 61 VVLYSTFDMAEALVRELILGLGIGCVFQLFFYMLYVAGDLLDTAFGLAMGKVMDPMNGVQ 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF-GNIFSSFVNMLQTTF 179
L + I L + H +Y IP+G + F N+ + M T F
Sbjct: 121 TAILGQFVNIFFFLYFFATGCHLLTVRLFAYTYEVIPVGAGVFFVRNVLWYIITMSATVF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+++++L+ PF+ V +++G+L KL+PQI ++ I+ I LG L + L +
Sbjct: 181 LMVIKLALPFVAAEFVLEMTMGVLMKLIPQIHVFVINIQCKILLGILLMILFAYPMGAFM 240
Query: 240 SHSFLYG 246
Sbjct: 241 DGYADAM 247
>gi|126443144|ref|YP_001061220.1| flagellar biosynthesis pathway, component FliR [Burkholderia
pseudomallei 668]
gi|167725904|ref|ZP_02409140.1| Flagellar biosynthesis pathway, component FliR [Burkholderia
pseudomallei DM98]
gi|254182915|ref|ZP_04889508.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1655]
gi|126222635|gb|ABN86140.1| flagellar biosynthesis pathway, component FliR [Burkholderia
pseudomallei 668]
gi|184213449|gb|EDU10492.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
1655]
Length = 258
Score = 93.0 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 92/228 (40%), Gaps = 4/228 (1%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
CR+ + + P + S +P ++R+ A+ +++ LP + + V A +
Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVD---PVAIPVFSARGALAAA 74
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
++ +G + G+L G ++++ +GL + + ++ + + +L
Sbjct: 75 EQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASIL 134
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ID H V L S+ P+G ++ ++ F L++P +F +
Sbjct: 135 LFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSL-KPLAYQAAWLFSTTTLLAAPLVFATV 193
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
V I L++ P I ++ + + G L L ++ + ++
Sbjct: 194 VLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYASM 241
>gi|163738054|ref|ZP_02145470.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis
BS107]
gi|161388670|gb|EDQ13023.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis
BS107]
Length = 259
Score = 93.0 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 117/234 (50%), Gaps = 5/234 (2%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
++ R+G+ + +LP Y+P +++L ++AF++++ L + +Y L
Sbjct: 23 IVFLRIGAMVSVLPAFGEKYVPARIKLAISLAFTLIVA---PALPILPPPASPLHYGSLA 79
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ E +G G+ IR++ +Q G++ + + L +G + + +++ I GL
Sbjct: 80 LSEAVVGLALGMAIRMFVHAIQIAGTIAAQSTSLA--QVLGGIGAEPMPAIGAVLLISGL 137
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
++ H +V ++ SY P+G+ + + V+ + +F + L++PFL
Sbjct: 138 ALAVMLGLHIRVAEFMIYSYMMFPVGEFPSASGLSDWGVHRVSRSFAMGFSLAAPFLIGS 197
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+V+N+++G++N+ +P + + F+ P + G L ++ +I+ +S + + F
Sbjct: 198 MVYNLTLGVINRAMPALMVAFVGAPVVTFGGLAILMVASPMILDIWSTALMGFF 251
>gi|56695094|ref|YP_165441.1| flagellar biosynthetic protein FliR [Ruegeria pomeroyi DSS-3]
gi|56676831|gb|AAV93497.1| flagellar biosynthetic protein FliR [Ruegeria pomeroyi DSS-3]
Length = 257
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 5/244 (2%)
Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
+ LF + RV + + +LP IPM+VRL A A + T
Sbjct: 11 LISGELWQLFAVFLRVSALVSVLPAFGEQSIPMRVRLGVAAA---FAVIVAPATPQAPEI 67
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
N ++ L E G V GL IR++ + LQ G + + A L+ +G + +
Sbjct: 68 TNVLQFAMLAGTEALAGLVMGLGIRLFAMALQVAGMIAAQATSLS--QLLGNAVAEPTPA 125
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
+ L+ + GL + H +V L+ SY PIG+ + G++ V + F +
Sbjct: 126 MGHLLMMDGLALAVMSGLHVRVAEFLIHSYTIFPIGKLPHPGDLSQWGVAQIGRMFALAF 185
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++PF+ +++N+++G +N+ +PQ+ + F+ P + G L + +++ + +
Sbjct: 186 ALAAPFVIASLIYNLALGAINRAMPQLMVAFVGAPVITFGGMALLLVGTPLLLSVWLDAL 245
Query: 244 LYGF 247
F
Sbjct: 246 WSFF 249
>gi|124382801|ref|YP_001025866.1| type III secretion system protein BsaY [Burkholderia mallei NCTC
10229]
gi|126444373|ref|YP_001063159.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 668]
gi|126446524|ref|YP_001077951.1| type III secretion system protein BsaY [Burkholderia mallei NCTC
10247]
gi|126456666|ref|YP_001076110.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106a]
gi|226195966|ref|ZP_03791552.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pakistan 9]
gi|237508057|ref|ZP_04520772.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei MSHR346]
gi|242312170|ref|ZP_04811187.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106b]
gi|254301458|ref|ZP_04968902.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 406e]
gi|126223864|gb|ABN87369.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 668]
gi|126230434|gb|ABN93847.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106a]
gi|126239378|gb|ABO02490.1| type III secretion system protein BsaY [Burkholderia mallei NCTC
10247]
gi|157811357|gb|EDO88527.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 406e]
gi|225931859|gb|EEH27860.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pakistan 9]
gi|235000262|gb|EEP49686.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei MSHR346]
gi|242135409|gb|EES21812.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106b]
gi|261826986|gb|ABM99918.2| type III secretion system protein BsaY [Burkholderia mallei NCTC
10229]
Length = 247
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 10 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 64
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 65 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 124
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 125 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 183 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 231
>gi|312171381|emb|CBX79640.1| Surface presentation of antigens protein spaR [Erwinia amylovora
ATCC BAA-2158]
Length = 272
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 93/250 (37%), Gaps = 8/250 (3%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTID 59
+ ++ + ++ + R+ LLP L + ++ I L P + ++
Sbjct: 6 LYLNFQHGVLIFTMAYARLAIVFYLLPVLGERVLSNLIIKNTIIALIIIGLWPCYAEVLN 65
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ + L++ E +G + + + V + G ++ G + S+ + +
Sbjct: 66 PEQ-----GWLILLLKECVIGLILAMTLCVPFWIVISLGEILDNQRGATISDSIDPVNGV 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L+ + + + LV+SY P G L + + + +L
Sbjct: 121 QSSTLSGFLNFAFGAIFFASGGMSSLMELLVQSYHVFPRGSNLVDFH-WQAVGGLLMVLA 179
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGS-LFLCLSIEIIVYQ 238
+ LS+P + +V I +G+ + PQ+ + +S + +FL + I +
Sbjct: 180 KGSIMLSAPVMIVMMVAEILLGVFARFCPQLNPFSLSLTIKSFIAFTVFLFYGFQAISQK 239
Query: 239 FSHSFLYGFF 248
H F FF
Sbjct: 240 PLHLFSIAFF 249
>gi|188997533|ref|YP_001931784.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932600|gb|ACD67230.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 257
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 109/246 (44%), Gaps = 2/246 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + ++ LI R+ + M P +S IP V++ ++F+ + +++
Sbjct: 1 MVLITPDQATTVALIFSRIIAFFMAFPLISSPIIPHNVKVLLVVSFAYFTMLNFNIKLEI 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + + L++ E+F+G G+++ ++ + +IS +GL + +
Sbjct: 61 KEY-DLLVFLTLILKEVFIGFSLGIIVNIFIGAFSYAAEIISYLMGLTVLNMFNPAFG-Q 118
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L+ + ++ + AL KS+ IP+ +F + F+
Sbjct: 119 TSVLSGYFLFLFYFLFFISGAYQIFIGALFKSFEVIPLSSFNINNGVFEFIIKKSSDIFL 178
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +++ PF+ +VFNI + L+N+L+PQI ++ + P I +G + L + +I+
Sbjct: 179 LSFQMAFPFILVLLVFNIVLALINRLIPQINVFMVGLPAQIFIGFVILIFASSLIISVGL 238
Query: 241 HSFLYG 246
+
Sbjct: 239 NFIDKM 244
>gi|254185169|ref|ZP_04891758.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1655]
gi|184215761|gb|EDU12742.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1655]
Length = 247
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 10 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTVVFAIILGLWPSF-----AHPPLQGGAL 64
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 65 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 124
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 125 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 183 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 231
>gi|118592628|ref|ZP_01550018.1| yscT; putative type III secretion protein [Stappia aggregata IAM
12614]
gi|118434679|gb|EAV41330.1| yscT; putative type III secretion protein [Stappia aggregata IAM
12614]
Length = 282
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 92/235 (39%), Gaps = 3/235 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E M+SL + + R+ + I + LS +P R + ++ L+P I L
Sbjct: 12 EKHMLSLAMSLPRIYAFIAMSGILSTGVVPRLARNGAILILALPLVPVNMANISLIGDSL 71
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A + E +G + G +I + G + G + +S+ TPL
Sbjct: 72 PA-LALYFAKEYAIGFLIGYMIGWIFWSVTSAGDFMDNQRGAAIASSIDPLQGQETTPLG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIML 183
+L L ++ + + L KS+ P+ + L + +L M
Sbjct: 131 NLFSQAFLTYMYSVGGILIIIGILYKSFMIWPVTRMLPIVSERFPVLILEILDLGMRTMF 190
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L++P + + +++ L+++ PQI ++ +S G+ + L I+I+
Sbjct: 191 VLAAPVIALMFLSELALALVSRFAPQIQVFILSMGIKSGIATFVLVFYIKILFPY 245
>gi|307718616|ref|YP_003874148.1| hypothetical protein STHERM_c09280 [Spirochaeta thermophila DSM
6192]
gi|306532341|gb|ADN01875.1| hypothetical protein STHERM_c09280 [Spirochaeta thermophila DSM
6192]
Length = 260
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 4/239 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ RV S + + P S S IP R+ A S + P+ + Y+
Sbjct: 12 FLLVFARVFSLLAISPLFSSSGIPGIARVGLAFFTSAAVFPWASSLYTIPE--TGLGYAF 69
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ E+ +G + G + +Y Q G +G N + + ++ +
Sbjct: 70 LLLGEVLVGLITGFFVLLYFSLFQIAGEFFGFQMGFNAASVYDPLSQEELPLMGQVMSNV 129
Query: 132 GLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPF 189
+L V + S L + + F F++ L F L+ P
Sbjct: 130 AVLVFLVTGGFLKFFLSGVYYSIKAFRSADILVYREDFFDVFLHGLAGIFQYAFVLALPL 189
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248
+ ++ ++S+GLL K PQ+ + + P IG+G + L + + + S F Y F+
Sbjct: 190 ISVLLLVSVSMGLLGKAAPQMNLLLMGFPISIGVGFVLLLVILPFVAEMMSRIFDYMFY 248
>gi|167820373|ref|ZP_02452053.1| type III secretion system protein BsaY [Burkholderia pseudomallei
91]
gi|254186854|ref|ZP_04893370.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pasteur 52237]
gi|157934538|gb|EDO90208.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pasteur 52237]
Length = 256
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 19 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 73
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 74 AGVALTEAAAGVVLGVALSLPFWVATALGELIDNQRGATISDSIDPATGVEASALAPFVS 133
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 134 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 192 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 240
>gi|298346008|ref|YP_003718695.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC
43063]
gi|304390234|ref|ZP_07372188.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315657499|ref|ZP_07910381.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236069|gb|ADI67201.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii ATCC
43063]
gi|304326716|gb|EFL93960.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491971|gb|EFU81580.1| flagellar biosynthesis protein FliR [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 248
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 83/238 (34%), Gaps = 6/238 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L R + P + I +++ A + +
Sbjct: 6 ALFTAFALASVRATVFLAFCPPFNNRAISGRIKAMLGAALGFACMGRIGP------VDRS 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++++ +G +++R+ LQ GS+I G + + +
Sbjct: 60 DVFLFELLIQALIGFAMAVMVRIIVATLQMAGSLIDFEGGFAMAQAFDPLTMTNQATFGR 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + L+ + + + L +S+ +PIG + GN V + + ++
Sbjct: 120 VYELSAMAMLFATNGYQLLILGLARSFNAMPIGAAFDMGNYADRLVFRFGELMVASIEIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
P L + ++ +GLL K+ P + + + P I + + L + +I
Sbjct: 180 GPLLLVLFLTDMGLGLLTKVAPAMNAFTLGFPLKIMMTAFTAPLIMVVIPQVVDKLMD 237
>gi|85058019|ref|YP_453721.1| flagellar biosynthesis protein FliR [Sodalis glossinidius str.
'morsitans']
gi|84778539|dbj|BAE73316.1| flagellar protein FliR [Sodalis glossinidius str. 'morsitans']
Length = 262
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 3/235 (1%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
F + R+ + P LS I +V++ A+ ++++ P L + + L
Sbjct: 15 FWPLARLLGLFVSAPLLSEKIIAKKVKIGLAVLITLLIAPGLE---PVATPLVSVAGLWL 71
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+M +L +G + GL +++ ++F G VI +GL+ T + L+ ++
Sbjct: 72 IMAQLLIGVIVGLTLQLAFSTVRFAGEVIGLQMGLSFATFFDPFSGPNSPIIARLLNLLL 131
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
LL +D H + ALV S+ +PI G F + + F L L+ P +
Sbjct: 132 LLLFLSLDAHLVMIDALVDSFQLLPIAPLPLNGESFLALARAVGLLFSCGLMLALPAMTL 191
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ NI++G+LN+L PQ ++ I P +G G L L L + ++ F F
Sbjct: 192 LLLLNITLGVLNRLTPQFSVFVIGFPLTLGGGLLALMLVMPLLATFAEGLFTTLF 246
>gi|325295423|ref|YP_004281937.1| flagellar biosynthetic protein FliR [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065871|gb|ADY73878.1| flagellar biosynthetic protein FliR [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 260
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 2/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VN 65
L RV S + P +S + IP+ +R+ +AFS L + + + ++
Sbjct: 8 HTFSLFLLTFVRVASFFLAFPFISTTLIPLNIRILLILAFSFYLSQIIEPSQMIDITKID 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ LV+ E+ LG +L +Y+ +IS ++GL + + + + L+
Sbjct: 68 LLSFFLLVIKEVLLGISFSILTTIYSSIFIHAAELISYSMGLTIVNIFDSTFG-SISVLS 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
I + + D + A V+S+ IPIG ++ F+ + F + ++
Sbjct: 127 RFFVYIFYVVFFFTDAYKIFIAAFVESFKIIPIGNFHLSDSLLYFFLKESKLIFFLSFKI 186
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ PF+ + N+ + L+N+L+PQI ++ + P I +G FL I++Y +
Sbjct: 187 AFPFIITLFITNLILALVNRLIPQINVFIVGLPLQIFIGLFFLSTGFSILIYSSKYLIE 245
>gi|284007166|emb|CBA72450.1| flagellar biosynthesis protein FliR [Arsenophonus nasoniae]
Length = 262
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 94/239 (39%), Gaps = 3/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ F RV + + P IP + ++ A+ +I++ + Q +
Sbjct: 12 TYINQFFWPFVRVLALFSIAPFFGEKQIPKKSKIALALLITILISAAIPL---PQIPLFS 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+++ ++ +G + GL +++ +++ G V+ +GL+ + + +
Sbjct: 69 VIGCWILIQQVLIGLLMGLTMQIAFAIVRYAGEVLGMQMGLSFALFVDPAAGPNMPIIAR 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ LL D H + L S+ IPI F F L L+
Sbjct: 129 FFNLLLLLLFLSFDIHLWLLSLLADSFQLIPIQSISLNSQSFILVAQTAGIIFYYGLLLA 188
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P L ++ NIS+G+LN++ PQ+ I+ + P + +G L L II F
Sbjct: 189 LPILTLLLIINISLGILNRMTPQLSIFVVGFPLTLLIGIYLLPLLTTIITKYAEKIFND 247
>gi|167840166|ref|ZP_02466850.1| type III secretion system protein BsaY [Burkholderia thailandensis
MSMB43]
Length = 247
Score = 92.6 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 8/237 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 10 AIAIAYARVAPVFYLLPFLNDRTIVNGVVKNTIVFAVILGLWPSF-----AHPHLQGGAL 64
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 65 AGVALTEAAAGVVLGVALSLPFWVAAAVGELIDNQRGATISDSIDPATGVEASALAPFVS 124
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 125 LFYAAAFLQQGGMLTIVGALESSYATVPAGALFSVD--LPRVGALLTDLVAHGLALAAPV 182
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
L + + +GL ++ PQ+ + +S + L + L+
Sbjct: 183 LIVMFLTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFLYAAPHELTALLHA 239
>gi|134280964|ref|ZP_01767674.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305]
gi|125657195|gb|ABN48683.1| FliR [Burkholderia pseudomallei]
gi|134247986|gb|EBA48070.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305]
Length = 258
Score = 92.6 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 93/228 (40%), Gaps = 4/228 (1%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
CR+ + + P + S +P ++R+ A+ +++ LP + + V A +
Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVD---PVAIPVFSARGALAAA 74
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
++ +G + G+L G ++++ +GL + + ++ + + +L
Sbjct: 75 EQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASIL 134
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ID H V L S+ P+G ++ ++ F + L++P +F +
Sbjct: 135 LFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSL-KPLAYQAAWLFSTTMLLAAPLVFATV 193
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
V I L++ P I ++ + + G L L ++ + ++
Sbjct: 194 VLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYASM 241
>gi|254299710|ref|ZP_04967159.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
406e]
gi|157809532|gb|EDO86702.1| flagellar biosynthetic protein FliR [Burkholderia pseudomallei
406e]
Length = 258
Score = 92.6 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 91/228 (39%), Gaps = 4/228 (1%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
CR+ + + P + S +P ++R+ A+ +++ LP + + V A +
Sbjct: 18 PFCRILAALSAAPFIGESTVPARMRVTIALFLALIALPAVD---PVAIPVFSARGALAAA 74
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
++ +G + G+L G ++++ +GL + + ++ + + +L
Sbjct: 75 EQILIGLLFGMLFHFVQAVFMMLGYLVASQMGLAMAVMNDPLNGATSDVVSGFMLVASIL 134
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ID H V L S+ P+G ++ + F L++P +F +
Sbjct: 135 LFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPS-LKPLAYQAAWLFSTTALLAAPLVFATV 193
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
V I L++ P I ++ + + G L L ++ + ++
Sbjct: 194 VLQIGKSYLSRATPSINLFSLGFAIMTVFGLLMLGAMLKGLPAHYASM 241
>gi|163742550|ref|ZP_02149936.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis
2.10]
gi|161384135|gb|EDQ08518.1| flagellar biosynthetic protein FliR [Phaeobacter gallaeciensis
2.10]
Length = 259
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 48/234 (20%), Positives = 116/234 (49%), Gaps = 5/234 (2%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
++ R+G+ + +LP Y+P +++L ++AF+ ++ L + +Y L
Sbjct: 23 IVFLRIGAMVSVLPAFGEKYVPARIKLAISLAFTFIVA---PALPILPPPASPLHYGSLA 79
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ E +G G+ IR++ +Q G++ + + L +G + + +++ I GL
Sbjct: 80 LSEAVVGLALGMAIRMFVHAIQIAGTIAAQSTSLA--QVLGGIGAEPMPAIGAVLLISGL 137
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
++ H +V ++ SY P+G+ + + V+ + +F + L++PFL
Sbjct: 138 ALAVMLGLHIRVAEFMIYSYMMFPVGEFPSASGLSDWGVHRVSRSFAMGFSLAAPFLIGS 197
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+V+N+++G++N+ +P + + F+ P + G L ++ +I+ +S + + F
Sbjct: 198 MVYNLTLGVINRAMPALMVAFVGAPVVTFGGLAILMVASPMILDIWSTALMGFF 251
>gi|238898599|ref|YP_002924280.1| type III needle complex export protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229466358|gb|ACQ68132.1| type III needle complex export protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 254
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 5/229 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ + R+ LLP S + + +RL M + L P+ +
Sbjct: 13 LIVVLFASARLMPAFFLLPFFSNNVLTGSLRLPITMLVAFSLWPYQEKVLP---PFETFL 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LV EL +G + LI L G++I G + +S+ + + L++
Sbjct: 70 YLGLVSKELLIGVLLAFLISWPFWILHAVGAIIDNQRGATISSSIDPISGVDTSELSNFF 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + +SY ++ F FS +L L L+SP
Sbjct: 130 NLFAAAVFLQGGGMTLFLESYHQSYQICSPLRDCTF--AFSPIFAILTKLMSKSLILASP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
+ ++ +GLL++ PQ+ + I+ + L + L +
Sbjct: 188 VIAVLLMTEAILGLLSRFAPQLNAFSIALTVKSLIAFLVIILYFSAFIP 236
>gi|37527635|ref|NP_930979.1| Type III secretion component protein SctT [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787070|emb|CAE16145.1| Type III secretion component protein SctT [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 262
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 97/245 (39%), Gaps = 5/245 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ +++ L++ R+ SC ++ P LS + +R A + ++ P + +
Sbjct: 7 QQQILAYTLLLPRIMSCFVIFPVLSKQMLGGGLIRNGVACSLALYAYPTVAG--SQLPTL 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ + L+ E+ LG + G + + ++ TG +I G + + + + +P
Sbjct: 65 SSLELTLLLGKEVLLGLLIGFIASIPFWAMEATGFIIDNQRGATMASVLNPALGSQTSPT 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIM 182
L+ + + + AL +SY + P+ Q F +
Sbjct: 125 GLLLTQTLITLFFSGGAFLSLLGALFQSYNSWPVTQFFPKITNQWLHFFYGQFSYLLQLC 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+++P L + + L+++ P + ++ ++ P + SL L + I+++++
Sbjct: 185 ALMAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYIQLLMHHAYDK 244
Query: 243 FLYGF 247
L
Sbjct: 245 VLLML 249
>gi|253988527|ref|YP_003039883.1| type III secretion component protein sctt [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211637891|emb|CAR66520.1| type iii secretion component protein sctt [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779977|emb|CAQ83138.1| type iii secretion component protein sctt [Photorhabdus
asymbiotica]
Length = 262
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 97/245 (39%), Gaps = 5/245 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ +++ L++ R+ SC ++ P LS + +R A + ++ P + +
Sbjct: 7 QQHILAYTLLLPRIMSCFVIFPVLSKQMLGGGMIRNGVACSLALYAYPTVANNP--LPTF 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
L+ E+ LG + G + + ++ TG ++ G + + + S +P
Sbjct: 65 GSLELMLLLGKEVLLGLLIGFIASIPFWAMEATGFIVDNQRGATMASVLNPSLGSQTSPT 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIM 182
L+ + + + AL +SY + P+ Q S F +
Sbjct: 125 GLLLTQTLITLFFSGGAFLSLLGALFQSYNSWPVTQFFPTITNQWISFFYGQFSYLLQLC 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+++P L + + L+++ P + ++ ++ P + SL L + I+++++
Sbjct: 185 ALMAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYIQLLMHYAYDK 244
Query: 243 FLYGF 247
L F
Sbjct: 245 VLLIF 249
>gi|260778658|ref|ZP_05887550.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604822|gb|EEX31117.1| type III secretion protein SpaR [Vibrio coralliilyticus ATCC
BAA-450]
Length = 256
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 2/241 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGL-SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L L + R +++LP + +R + F++ ++P +
Sbjct: 2 QYVPILALCMMRPLGMMIMLPLFKGGAMGSGLIRNTLVLMFALPIIPMMQAHPVNFAAKP 61
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ EL +G + G + + G VI T G ++ T + L +
Sbjct: 62 LTELIFIYGEELLIGLIVGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSVFG 121
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLR 184
I + V + + AL +SY +P L ++ S Q + L
Sbjct: 122 MFFTQILGVLFLVSGGFNALLTALYQSYTVLPPESALSFNQDLLSFISQQWQMMSDMCLS 181
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ P + I+ ++++GL+N+ V Q+ ++F+S P L L +S+ + + +
Sbjct: 182 FALPAMVVMIMVDVALGLVNRSVEQLNVFFLSMPIKSILVVFLLLVSMHFALSHYLNQIN 241
Query: 245 Y 245
Sbjct: 242 Q 242
>gi|149203119|ref|ZP_01880090.1| flagellar biosynthetic protein FliR [Roseovarius sp. TM1035]
gi|149143665|gb|EDM31701.1| flagellar biosynthetic protein FliR [Roseovarius sp. TM1035]
Length = 254
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 52/231 (22%), Positives = 112/231 (48%), Gaps = 5/231 (2%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
+ RV I LLPG S +PM+++L +AF++++ P L + Q RA L++
Sbjct: 21 VFLRVAPIIGLLPGFGESSVPMRIKLVLVIAFTLIVTPVLSPDLADQ---ARAPTVGLIL 77
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
E +G G+ +R++ + LQ GS+ + + L +G + + L+ +
Sbjct: 78 SETIVGLALGVALRLFLMALQMAGSIAAQSTSLA--QILGNASQTPLPAIGHLLATGAVA 135
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ++ H ++ +V SYG P+ + + G + V + F L++PF+ +
Sbjct: 136 LMMIMGVHVRLAEMIVLSYGIFPVAEFPDVGTLSQWGVARIAQAFSFGFSLAAPFVLVSV 195
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++N+++G++N+ +PQ+ + + P + L L L + ++ + +F
Sbjct: 196 LYNLTLGIINRAMPQLMVVLVGAPAAMALTLFLLMLVVPTMLVVWLGAFQS 246
>gi|134282106|ref|ZP_01768812.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 305]
gi|134246635|gb|EBA46723.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 305]
Length = 251
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 14 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 68
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 69 AGVALTETAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 128
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 129 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 186
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 187 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 235
>gi|315186371|gb|EFU20131.1| flagellar biosynthetic protein FliR [Spirochaeta thermophila DSM
6578]
Length = 260
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 93/239 (38%), Gaps = 4/239 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ RV + + + P S S IP R+ A S + P+ + Y+
Sbjct: 12 FLLVFARVFTLLAISPLFSSSGIPGIARVGLAFFTSAAVFPWASSLYTIPE--TGLGYAF 69
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ E+ +G + G + +Y Q G +G N + + ++ +
Sbjct: 70 LLLGEVLVGLITGFFVLLYFSLFQIAGEFFGFQMGFNAASVYDPLSQEELPLMGQVMSNV 129
Query: 132 GLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPF 189
+L V + S L + ++F F++ L F L+ P
Sbjct: 130 AVLVFLVTGGFLKFFLSGVYYSIKAFRSADILVYREDLFDVFLHGLAGIFQYAFVLALPL 189
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248
+ ++ ++S+GLL K PQ+ + + P IG+G + L + + + S F Y F+
Sbjct: 190 ISVLLLVSVSMGLLGKAAPQMNLLLMGFPISIGVGFILLLVVLPFVAEMMSRIFDYMFY 248
>gi|254253722|ref|ZP_04947039.1| Type III secretory pathway component EscT [Burkholderia dolosa
AUO158]
gi|124898367|gb|EAY70210.1| Type III secretory pathway component EscT [Burkholderia dolosa
AUO158]
Length = 248
Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 81/232 (34%), Gaps = 5/232 (2%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
L R+ +M+ P S + + +VR A+ + + + L + +
Sbjct: 4 LCSERLMVLMMIFPPTSDNVVQGRVRTALALLWGSFIA---YGQRGLLEQGDATMLVGIG 60
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ E +G G + G+ + G N S + ++L+ +
Sbjct: 61 LKEALIGVGLGFAASAVFWAAESVGTYVDDLTGFNQLQMQNPSQGQQTSLTSTLLSQFAI 120
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLSSPFLF 191
A W + + A+ +SY P+ G S + + + +L++P +
Sbjct: 121 AAFWCLGGMTFLLGAIYESYTWWPLANLTPAGGSVLESFVLTKTDSLMETVAKLATPMML 180
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ +I G K+ ++ + ++ P L L L L I + Q
Sbjct: 181 MLLLIDIGFGFTGKVSQKLDLPSLAQPVKGALTILMLALMAAIFIDQVRDQL 232
>gi|261419436|ref|YP_003253118.1| flagellar biosynthesis protein FliR [Geobacillus sp. Y412MC61]
gi|319766251|ref|YP_004131752.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y412MC52]
gi|261375893|gb|ACX78636.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y412MC61]
gi|317111117|gb|ADU93609.1| flagellar biosynthetic protein FliR [Geobacillus sp. Y412MC52]
Length = 257
Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 6/243 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L+ R S +P S +P + A FS +L + +
Sbjct: 6 TYFPAFLLVFVRAASFFAAMPLFSYRTVPASYKAGLAFLFSWLLFLAMPKPV----LALD 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y LV+ E +G GLL + +Q G +I IG + + L
Sbjct: 62 GVYVLLVVKEALVGLALGLLAAILMAAMQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGE 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLR 184
+ ++ LL L +D HH + + SY +P+ + + + V F +
Sbjct: 122 YLHLLALLLLLALDGHHLLLDGMFYSYHWLPLDRLPHVADGRAVEYAVRAFAAMFAAAFQ 181
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + + ++++G++ + VPQ+ I+ + L L I I+ F
Sbjct: 182 MAAPLVGSLFLVDVALGIIARAVPQMNIFAVGFSAKTAAAFLLLLAGIGTILLAARSVFH 241
Query: 245 YGF 247
+ F
Sbjct: 242 FMF 244
>gi|116626500|ref|YP_828656.1| type III secretion system inner membrane R protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116229662|gb|ABJ88371.1| type III secretion system inner membrane R protein [Candidatus
Solibacter usitatus Ellin6076]
Length = 257
Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 87/239 (36%), Gaps = 2/239 (0%)
Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
+ + L++ RVG ++ +P P VR A+ F++ L Q
Sbjct: 7 LSVGTLYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAVDAAQ-- 64
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
V A + ++ E LG G+ + + L V+ G +++ +
Sbjct: 65 VGPATLAGWLLSEAALGLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEADSGI 124
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
L ++ + + + ++ +S IP G + + + F + +
Sbjct: 125 LLVFAQLMSGMLFFAMGLDREILRLFAQSLDRIPAGVYIFSRASAEPLIRLGAILFSVGV 184
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
RL+ P + ++ ++++ LL +L Q+ + ++ P + + L + +
Sbjct: 185 RLALPVVALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWASIVFPRVVREI 243
>gi|238793340|ref|ZP_04636966.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia intermedia ATCC
29909]
gi|238727309|gb|EEQ18837.1| Type III secretion protein SpaR/YscT/HrcT [Yersinia intermedia ATCC
29909]
Length = 264
Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 100/234 (42%), Gaps = 3/234 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L + + R +++LP ++ + +R A ++ + P L+ ++ L +
Sbjct: 7 WLEALGVAMMRPYGMLLILPLFTVRSLGSSLLRNGLVFAIALPVTP-LFFSLPLITHDSL 65
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++ VEL +G + G + + + G +I T G + T S + +
Sbjct: 66 IGWFGVLFVELLIGVMIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFGV 125
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRL 185
L I + + + V AL SY +P+G + + + + L
Sbjct: 126 LFTQILTVLFLLSGGFNLVLAALYGSYDILPVGSGIRPSSAMLHFLQSEWLLMQELCLSF 185
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P + ++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ +
Sbjct: 186 ALPAMLVMVLADLSLGLINRSAQQLNVFFLAMPIKSALALLLLLISLPYALHHY 239
>gi|167615463|ref|ZP_02384098.1| type III secretion inner membrane protein SctT, putative
[Burkholderia thailandensis Bt4]
Length = 315
Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 88/242 (36%), Gaps = 5/242 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L L R+ + +LP + + + +R A + + + I ++
Sbjct: 18 GFIVLLALSSERLLVIMSILPATADTVLKGPMRSGAAALWCLFVACGQQALIPQ---LHG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A+ + E +G V G+ + G+ + G N S + + +
Sbjct: 75 AFLVIACLKEAVIGLVIGIAASTVFWAAEAIGTYVDDVAGFNNLQMQNPSSGTQTSLMAT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-R 184
L G + + + W++ + AL +SY P+G + F M M+ R
Sbjct: 135 LFGQLTIASFWLLGGMTFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMVAR 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 195 IATPMMTMLVLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVNEMRGQIS 254
Query: 245 YG 246
Sbjct: 255 LA 256
>gi|167577316|ref|ZP_02370190.1| type III secretion inner membrane protein SctT, putative
[Burkholderia thailandensis TXDOH]
Length = 345
Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 88/242 (36%), Gaps = 5/242 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L L R+ + +LP + + + +R A + + + I ++
Sbjct: 18 GFIVLLALSSERLLVIMSILPATADTVLKGPMRSGAAALWCLFVACGQQALIPQ---LHG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A+ + E +G V G+ + G+ + G N S + + +
Sbjct: 75 AFLVIACLKEAVIGLVIGIAASTVFWAAEAIGTYVDDVAGFNNLQMQNPSSGTQTSLMAT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-R 184
L G + + + W++ + AL +SY P+G + F M M+ R
Sbjct: 135 LFGQLTIASFWLLGGMTFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMVAR 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 195 IATPMMTMLVLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVNEMRGQIS 254
Query: 245 YG 246
Sbjct: 255 LA 256
>gi|83717347|ref|YP_438939.1| type III secretion inner membrane protein SctT [Burkholderia
thailandensis E264]
gi|257142042|ref|ZP_05590304.1| type III secretion inner membrane protein SctT, putative
[Burkholderia thailandensis E264]
gi|83651172|gb|ABC35236.1| type III secretion inner membrane protein SctT, putative
[Burkholderia thailandensis E264]
Length = 330
Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 88/242 (36%), Gaps = 5/242 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L L R+ + +LP + + + +R A + + + I ++
Sbjct: 18 GFIVLLALSSERLLVIMSILPATADTVLKGPMRSGAAALWCLFVACGQQALIPQ---LHG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A+ + E +G V G+ + G+ + G N S + + +
Sbjct: 75 AFLVIACLKEAVIGLVIGIAASTVFWAAEAIGTYVDDVAGFNNLQMQNPSSGTQTSLMAT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-R 184
L G + + + W++ + AL +SY P+G + F M M+ R
Sbjct: 135 LFGQLTIASFWLLGGMTFLLGALYESYAWWPLGSFDPVPAPLLEMFAQARLDMLMNMVAR 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 195 IATPMMTMLVLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVNEMRGQIS 254
Query: 245 YG 246
Sbjct: 255 LA 256
>gi|261344589|ref|ZP_05972233.1| type III secretion apparatus protein SpaR/YscT/HrcT [Providencia
rustigianii DSM 4541]
gi|282567503|gb|EFB73038.1| type III secretion apparatus protein SpaR/YscT/HrcT [Providencia
rustigianii DSM 4541]
Length = 264
Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 85/228 (37%), Gaps = 5/228 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ +M + L R+ + LP LS + ++ C ++ + P+L
Sbjct: 17 QHGLMKIALAWLRIAPVMFFLPFLSNKLLNGGIIKNCVVAYLALGMWPYLSAR---DIDW 73
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ S++ + E+ +G V L++ + + G +I T G + + + + + L
Sbjct: 74 AQMSLSEVFLYEICIGIVLALILGLPFMIANIIGELIDTQRGETISSIVDPASGSEASEL 133
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
I I + +Q+ +SY +P N L + +
Sbjct: 134 AVFISYIVCMVFLAQGGMYQLANVFAQSYQLLPFAHGFTSFNSLP-LAEWLNKAVVNGVI 192
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
L++P + + +++GL ++ PQ+ + +S + + L
Sbjct: 193 LTAPIIVTLFISEVALGLYSRFCPQLNAFSLSLAIKSIIAFIVFLLYF 240
>gi|188534035|ref|YP_001907832.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029077|emb|CAO96945.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 242
Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 7/223 (3%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
M + R+ LLP L + V+ I L P I V
Sbjct: 1 MIYVVAYARLAIVFYLLPILGDRILSNLIVKNSIISLVIIGLWPCYEPDI-----VTERG 55
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+++ E F+G + ++ + + G ++ G + + L++
Sbjct: 56 LISVLVEECFMGLLLATVLCIPFWIVIALGDILDNQRGATINDIFDPLSGGQNSVLSAFF 115
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + + + AL+KSY +P G +++ N +S +L + L++P
Sbjct: 116 NFSFGMIFFSSNGMLLLMNALMKSYQYLPQGHDISGVN-WSKAGKLLVELVECSIMLAAP 174
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231
+ +V I +G+ + PQ+ + +S + + L
Sbjct: 175 VIIVLLVTEILLGVFARYCPQLNAFSLSLTLKSFITFIIFLLY 217
>gi|237755397|ref|ZP_04584024.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692438|gb|EEP61419.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 257
Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 46/246 (18%), Positives = 111/246 (45%), Gaps = 2/246 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + +++ LI R+ + + P +S IP V++ ++F+ + +++
Sbjct: 1 MVLITPDQAITVALIFSRIIAFFLAFPLISSPIIPHNVKVLLVVSFAYFTMLNFNIKLEI 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + + L++ E+F+G G+++ ++ + +IS +GL + +
Sbjct: 61 KEY-DLLIFLTLILKEIFIGFSLGMIVNIFIGAFSYAAEIISYLMGLTVLNIFNPAFG-Q 118
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L+ + L ++ + AL KS+ IP+ +F + F+
Sbjct: 119 TSVLSGYFLFLFYLLFFISGAYQIFIGALFKSFEVIPLSSFNINNGVFEFIIKKSSDIFL 178
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +++ PF+ +VFNI + L+N+L+PQI ++ + P I +G + L + +I+
Sbjct: 179 LSFQMAFPFILVLLVFNIVLALVNRLIPQINVFIVGLPAQIFIGFVILIFASSLIISVGL 238
Query: 241 HSFLYG 246
+
Sbjct: 239 NFIDKM 244
>gi|21672369|ref|NP_660436.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008465|sp|Q8KA35|FLIR_BUCAP RecName: Full=Flagellar biosynthetic protein fliR
gi|21622974|gb|AAM67647.1| flagellar biosynthetic protein FliR [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 258
Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 102/236 (43%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
I++ + F + R+ + P + + +V++ + + ++ PFL + +
Sbjct: 11 ILISNFFWPLVRILAFFSTAPIFNDQNVNKKVKIILSFLIAFLIKPFLP---KVNVELFS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ ++ +G GL + +G +I+ IGL+ + + + ++
Sbjct: 68 IIGLFLLFQQILIGIALGLTCQFLFAAFTLSGEIIALQIGLSFANFFNSNRYIGTSLISR 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ I+ LL ++ H + + L+ S+ IP+ NIF F+ F+ + +
Sbjct: 128 WLNILNLLFFLTLNVHLYLVFMLIDSFYKIPVDVNFLSANIFFIFLKFSSNIFLNGVMFA 187
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + F+++ + + +LN+L PQI I+ I P + +G L L + + F
Sbjct: 188 LPIMIFFLISTLIMSILNRLSPQISIFSIGFPLNLLIGILILYYLMSMSFPFFKSL 243
>gi|167577441|ref|ZP_02370315.1| type III secretion system protein BsaY [Burkholderia thailandensis
TXDOH]
Length = 260
Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 8/227 (3%)
Query: 21 SCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
LLP L+ I V+ A + L P + + + + E
Sbjct: 33 PVFYLLPFLNDRTIVNGLVKNTIVFAVIVGLWPSF-----AHPPLRGGALAGVALTEAAA 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G V G+ + + G +I G + S+ + + + L + + A
Sbjct: 88 GLVLGVALSLPFWVATAIGELIDNQRGATISDSIDPATGVEASALAPFVSLFYAAAFLQQ 147
Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199
+ AL SY T+P G F +L L L++P L V +
Sbjct: 148 GGMLTIVGALESSYATVPAGA--PFSADLPRVGALLTDLVAHGLALAAPVLIVMFVTDAL 205
Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+GL ++ PQ+ + +S + L + L+
Sbjct: 206 LGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPHELTALLHA 252
>gi|76819134|ref|YP_335734.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710b]
gi|167923334|ref|ZP_02510425.1| type III secretion system protein BsaY [Burkholderia pseudomallei
BCC215]
gi|254265372|ref|ZP_04956237.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710a]
gi|76583607|gb|ABA53081.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710b]
gi|254216374|gb|EET05759.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710a]
Length = 251
Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 14 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 68
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 69 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 128
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 129 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 186
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 187 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 235
>gi|82470756|gb|ABB77408.1| HrcT [Pantoea stewartii subsp. stewartii]
Length = 265
Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 3/231 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L R+ C++L+P S + + VR +A +IV L + LQ
Sbjct: 11 EYLFALALSAARLYPCLILVPVFSFNILKGIVRSGVVLALAIVPTLGLQAQLALQMP-GW 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E +G + GL+I + Q G++ G + + + TPL
Sbjct: 70 PQLIALILKEGVIGILLGLVISMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGL 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L+ +L L + V + SY P+ Q L F N F ++ +L TF ++
Sbjct: 130 LLQQTLILFLILTTGLSGVTQIIWDSYSVWPVMQWLPFPNHNGFEQYLALLTDTFSHIII 189
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ + SI +L+ PQ+ + +S P LG LF L I +
Sbjct: 190 YAGPLVALLLMMDFSIAILSLYSPQLQAFVLSVPAKCLLGLLFFVLYIPTL 240
>gi|167615592|ref|ZP_02384227.1| type III secretion system protein BsaY [Burkholderia thailandensis
Bt4]
gi|257142143|ref|ZP_05590405.1| type III secretion system protein BsaY [Burkholderia thailandensis
E264]
Length = 260
Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 8/227 (3%)
Query: 21 SCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
LLP L+ I V+ A + L P + + + + E
Sbjct: 33 PVFYLLPFLNDRTIVNGLVKNTIVFAVIVGLWPSF-----AHPPLRGGALAGIALTEAAA 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G V G+ + + G +I G + S+ + + + L + + A
Sbjct: 88 GLVLGVALSLPFWVATAIGELIDNQRGATISDSIDPATGVEASALAPFVSLFYAAAFLQQ 147
Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199
+ AL SY T+P G F +L L L++P L V +
Sbjct: 148 GGMLTIVGALESSYATVPAGA--PFSADLPRVGALLTDLVAHGLALAAPVLIVMFVTDAL 205
Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+GL ++ PQ+ + +S + L + L+
Sbjct: 206 LGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPHELTALLHA 252
>gi|163733156|ref|ZP_02140600.1| flagellar biosynthetic protein FliR [Roseobacter litoralis Och 149]
gi|161393691|gb|EDQ18016.1| flagellar biosynthetic protein FliR [Roseobacter litoralis Och 149]
Length = 256
Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 112/235 (47%), Gaps = 5/235 (2%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
F++ CRV + +LP +P +V+L A+AF++++ P L + S +
Sbjct: 19 FVVFCRVAALAAVLPAFGEQTLPARVKLAAALAFTLIVAPALP---TISPPNAIGSISLV 75
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
++ E+ G G+ +R++ L LQ GS+ + + L+ +G + + ++ I G
Sbjct: 76 ILTEVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLS--QVLGGAAVDPLPAMGYILVIAG 133
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
L + H +V + ++ SY +P+G+ + ++ + F + L++PF+
Sbjct: 134 LALAVMAGLHVKVAHLIILSYDFMPVGRFVAAADVSEWGTKQVAQAFSLAFTLAAPFVIL 193
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+++N ++G +N+ +PQ+ + F+ P + G L +S ++ + +
Sbjct: 194 SVLYNFALGAINRAMPQLMVAFVGAPVITLGGLALLLISAPYMLTVWLAAMDRYL 248
>gi|53722419|ref|YP_111404.1| type III secretion-associated protein [Burkholderia pseudomallei
K96243]
gi|76819022|ref|YP_335579.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710b]
gi|126445338|ref|YP_001062983.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 668]
gi|126456304|ref|YP_001075929.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106a]
gi|134282661|ref|ZP_01769365.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 305]
gi|167923126|ref|ZP_02510217.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei BCC215]
gi|226199070|ref|ZP_03794632.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pakistan 9]
gi|237509184|ref|ZP_04521899.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei MSHR346]
gi|242311871|ref|ZP_04810888.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106b]
gi|254183791|ref|ZP_04890383.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1655]
gi|254262526|ref|ZP_04953391.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710a]
gi|52212833|emb|CAH38867.1| putative type III secretion-associated protein [Burkholderia
pseudomallei K96243]
gi|76583495|gb|ABA52969.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710b]
gi|126224829|gb|ABN88334.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 668]
gi|126230072|gb|ABN93485.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106a]
gi|134246218|gb|EBA46308.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 305]
gi|184214324|gb|EDU11367.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1655]
gi|225928845|gb|EEH24870.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pakistan 9]
gi|235001389|gb|EEP50813.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei MSHR346]
gi|242135110|gb|EES21513.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106b]
gi|254213528|gb|EET02913.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710a]
Length = 272
Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 4/232 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L + R+ + + P + VR + F + ++
Sbjct: 19 VTLLAICSVRLYIVMSVFPPTADGLSQGVVRNALVILFGSYVA--YGQPAGFVQTLHGTP 76
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ E +G V G+ ++ G I G N + TP +L+
Sbjct: 77 LIVTGLREAVIGVVLGIAASTVFWAIEGAGCYIDDLTGYNNVQMTNPARGEQSTPTATLL 136
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLS 186
+ +A W + L +SY PI + V+ + ++ +L+
Sbjct: 137 TQVATVAFWTFGGMTFLLGTLYESYRWWPITLTFPRMPALIEAFAVSQTDSLMQMVTKLA 196
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+P + ++ + + G K ++ + +S P + L L L + V Q
Sbjct: 197 APMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGAVTVLMLALFVGTFVDQ 248
>gi|329889294|ref|ZP_08267637.1| type III secretion apparatus protein SpaR/YscT/HrcT [Brevundimonas
diminuta ATCC 11568]
gi|328844595|gb|EGF94159.1| type III secretion apparatus protein SpaR/YscT/HrcT [Brevundimonas
diminuta ATCC 11568]
Length = 265
Score = 91.9 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 83/230 (36%), Gaps = 4/230 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
RV + +L+P LS +P VR + F + +L + + L E
Sbjct: 20 TRVATTFLLMPLLSPQTVPAMVRNSIFLVFGLAVLTMQPQVAQMTMPT--VQWILLFGKE 77
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+G V G + G +I T +G + + + +G +
Sbjct: 78 ALVGVVIGFFFATMLWAFEAAGQIIDTKVGATMAQVVDPLSGHQTSLNGEFLGRLANFVF 137
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ++ S+ PIG + + S F + + +SP L
Sbjct: 138 MFSGGLLLLVGTILDSFVIWPIGSLTPVLTMSSLSLFEGEFTRLMTLAVLFASPVLVVLF 197
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
V + ++GL+N+ PQ+ ++ +S L +L + + + +V + +
Sbjct: 198 VTDGALGLVNRYAPQLNVFSLSLSIKAWLATLIILIMMTGLVQTLLNEIM 247
>gi|194292001|ref|YP_002007908.1| sctt: non flagellar t3S system conserved inner membrane protein.
flir/mope/spar family. [Cupriavidus taiwanensis LMG
19424]
gi|193225905|emb|CAQ71852.1| SctT: non flagellar T3S system conserved inner membrane protein.
fliR/mopE/spaR family [Cupriavidus taiwanensis LMG
19424]
Length = 271
Score = 91.9 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 99/239 (41%), Gaps = 5/239 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++M + +++ R+ + +LP LS IP R +A ++ + P +D V
Sbjct: 20 EVIMPIVMVMPRLLTAFTVLPFLSQQAIPGVARNGIVLAIALFVSPGARIDLDA---VAG 76
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ E F+G + G+ ++ + LQ G +I G T + P+ +
Sbjct: 77 GLWLVLIFKEAFIGLLLGMAFGLFFVALQMIGELIDFQTGSGNATFFDPVTQQEDGPMEN 136
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN--MLQTTFMIMLR 184
L+ G+ + + +V+S+ P+ ++ S T F +++
Sbjct: 137 LLSHFGIALFAALGGFIAMTGVIVESFAFWPVMSFGPEMSLASMGFANLYAGTLFSWVVK 196
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
L++P L ++ + L+ + VPQ ++ + P I + L L L + ++V
Sbjct: 197 LAAPILLLLVIVELGFALIARFVPQFDVFQFAQPVKISVAFLMLVLMLAVMVDTLQGFL 255
>gi|283836565|ref|ZP_06356306.1| type III secretion apparatus protein SpaR/YscT/HrcT [Citrobacter
youngae ATCC 29220]
gi|291067494|gb|EFE05603.1| type III secretion apparatus protein SpaR/YscT/HrcT [Citrobacter
youngae ATCC 29220]
Length = 264
Score = 91.9 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 103/245 (42%), Gaps = 3/245 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDL-QNFV 64
I+ LF+ V R +++P L+ + +R + +I LP L + + L Q V
Sbjct: 10 GIIPLLFIAVLRPLGIFIIMPLLTSKNLAGTMIRNSIIILITIPALPGLKENVFLSQPHV 69
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
Y+ + E+F+G + G + + + G ++ T G ++ + + + T L
Sbjct: 70 IDFYFFLALSREVFIGVLIGFVAAIPFWAIDSAGFLLDTMRGSSMGNIYNPTLAESSTLL 129
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIML 183
+ + +V +Q+ L +SY P G+ + ++ V F++ L
Sbjct: 130 GVFFSQLFTVIFFVCGGMNQLITTLYQSYVLFPPGESISFNRHLLDFVVQQWNMLFVLFL 189
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S P ++ ++ +GLLN+ Q+ ++F++ L + L ++I + +
Sbjct: 190 HFSIPAAAVMLLTDVGMGLLNRSAQQLNVFFLAMSVKSILALIVLMITIAFSLDYVRETL 249
Query: 244 LYGFF 248
L +
Sbjct: 250 LRNLY 254
>gi|15643672|ref|NP_228718.1| flagellar biosynthesis protein FliR [Thermotoga maritima MSB8]
gi|4981446|gb|AAD35991.1|AE001755_14 flagellar biosynthesis protein FliR [Thermotoga maritima MSB8]
Length = 258
Score = 91.9 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 95/232 (40%), Gaps = 3/232 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ I R ++ P S P+ VR+ + S ++L + +I L V
Sbjct: 11 EEKFLAWMCIFTRFTGFFLIAPFFSERAFPVVVRVLLGLFTSWLMLFTVDVSIPLNTPV- 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
++ + +G G ++ ++ G + IG ++ + + P
Sbjct: 70 -LSFTLNLFFNFLVGFGIGFIVYLFLQAFNGAGYIFGFQIGFGMEEVLAFGE-EETNPTG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ I L +I +F L S P+ FS V F+++L++
Sbjct: 128 ELVYFIALTVFVLIKGPVLLFEGLKDSIDVFPVNLTGVTDGFFSYIVGRSSDFFVLILKI 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
+P + F ++ +I +G++++L+PQ+ ++ + P + +G + + + I
Sbjct: 188 GAPVIAFMLIISIVLGIVSRLIPQMNVFMVGLPLKVIIGVILILGMLPIWAD 239
>gi|167567956|ref|ZP_02360872.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
oklahomensis EO147]
gi|167573170|ref|ZP_02366044.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
oklahomensis C6786]
Length = 275
Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 4/232 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L + R+ + + P + VR + S + ++ A
Sbjct: 19 VTLLGICSVRLFVVMSIFPPTADGLSQGVVRNAIVLLLSSYVA--YGQPAGFAQTLHGAP 76
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ E +G V G+ ++ G I G N + TP L+
Sbjct: 77 LIVTGLRESVIGIVLGVAASTVFWAVEGAGCYIDDLTGYNNVQITNPARDEQSTPTALLL 136
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLS 186
I +A W + + L +SY PI G + V+ + ++ +L+
Sbjct: 137 AHIATVAFWTLGGMTFLLDTLYESYRWWPIALASPRGPELLEAFAVHQTDSLMQMVAKLA 196
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+P + ++ + + G K ++ +S P + L L L + + V Q
Sbjct: 197 APMMLILLLIDCAFGFAAKSASKLDFMGLSQPVKGAMTVLMLALFVGMFVDQ 248
>gi|226327732|ref|ZP_03803250.1| hypothetical protein PROPEN_01605 [Proteus penneri ATCC 35198]
gi|225203436|gb|EEG85790.1| hypothetical protein PROPEN_01605 [Proteus penneri ATCC 35198]
Length = 220
Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 81/197 (41%), Gaps = 3/197 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ F R+ + P S P + R+ A + ++ P L + +
Sbjct: 10 SGYISDFFWPFVRILALFSTAPLFSEKQTPKKFRIALAFLITALVAPGLPQS---HVPLF 66
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+++ ++ +G + GL +++ ++ G VI +GL+ T + S L
Sbjct: 67 SLIAFWVLLQQILIGTILGLSMQLAFASVRHAGEVIGLQMGLSFATFVDPSGGPNMPILA 126
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ ++ +L V D H + LV ++ +PIG + + V T F+ + L
Sbjct: 127 RIFNMLTMLLFMVFDGHLWLLSILVDTFYVVPIGNQTFNSLGILTLVQSGGTLFINGMML 186
Query: 186 SSPFLFFYIVFNISIGL 202
+ P + +V N+S+G+
Sbjct: 187 AMPLITLLLVLNLSLGI 203
>gi|290892878|ref|ZP_06555869.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Listeria
monocytogenes FSL J2-071]
gi|290557690|gb|EFD91213.1| LOW QUALITY PROTEIN: flagellar biosynthetic protein FliR [Listeria
monocytogenes FSL J2-071]
Length = 235
Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 86/236 (36%), Gaps = 4/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ RV S + P L IP V++ F MA SI + +D+
Sbjct: 4 EFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVA----TGVDVSGITTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G L+ + + + G +I +G + + S + +
Sbjct: 60 PDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + Y L+KS+ L + L + ++
Sbjct: 120 ILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
P + + NI + ++K PQI I+ + I G L ++ I+ F +
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNL 235
>gi|171316794|ref|ZP_02906005.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MEX-5]
gi|171098052|gb|EDT42868.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MEX-5]
Length = 271
Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 4/242 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L + R+G +++ P + VR + FS + ++L + ++
Sbjct: 17 EYLSLLGVCSLRLGIVMIVFPPAGDGALQGTVRNGLVLLFSTYVA--YGQPVELMDTLHG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + ++ E +G + +Q G I G N + S TP+++
Sbjct: 75 AQLVQTIVREAAIGFLLAFSASTVFWAVQSAGVYIDALTGYNNIQIVNPVRSEQSTPIST 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L G I A W + + L +SYG P+ G + S + T ++ +
Sbjct: 135 LFGQIANTAFWALGGGVVLLGMLYESYGWSPVSAAWPESTGILSSFLLQQTDTLMQMIAK 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L++P F ++ + K P++ + +S P L + L L + + Q
Sbjct: 195 LAAPMAFMLLLVDFGFAFAAKSAPKLDLMNLSQPAKALLAIMLLALFTSLFIEQVHGPLT 254
Query: 245 YG 246
Sbjct: 255 LA 256
>gi|53722556|ref|YP_111541.1| surface presentation of antigens protein [Burkholderia pseudomallei
K96243]
gi|52212970|emb|CAH39008.1| surface presentation of antigens protein [Burkholderia pseudomallei
K96243]
Length = 251
Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L P +
Sbjct: 14 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWPSF-----AHPPLQGGAL 68
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 69 AGVALTEAAAGVVLGVALSLPFWVATALGELIDNQRGATISDSIDPATGVEASALAPFVS 128
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 129 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 186
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 187 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 235
>gi|217077043|ref|YP_002334759.1| flagellar biosynthetic protein FliR [Thermosipho africanus TCF52B]
gi|217036896|gb|ACJ75418.1| flagellar biosynthetic protein FliR [Thermosipho africanus TCF52B]
Length = 254
Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 92/231 (39%), Gaps = 4/231 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E ++ +++ R+ ++ P LS +++P VR +A S + LP + +
Sbjct: 8 ETQFLNWAMLISRLTGMFLITPLLSAAFVPTTVRAFLVLALSYMSLPQVNPIPLDTPVIT 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
++ +G GLL G ++ G L T+M +
Sbjct: 68 ---IVLSLLNNFLIGFAIGLLAYFIFGAFSIAGELLGIESGFGLATAMDP-TMEETPIVG 123
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
LI ++ + ++ H V+ +V S T P+ + ++ F I L++
Sbjct: 124 QLIFLLSIFVFISLNGHMVVYQGVVDSIKTFPLYLDKLDFSLVKFIETKFIEMFFIALKI 183
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
P + + + N+ +G+L++LVPQ+ ++ + P L + + I
Sbjct: 184 GLPVIGYMFIINVLLGILSRLVPQMNVFMVGIPLKSLLVFVIFLGMVPIWA 234
>gi|15618732|ref|NP_225018.1| Yop proteins translocation protein T [Chlamydophila pneumoniae
CWL029]
gi|15836356|ref|NP_300880.1| YopT tranlocation T [Chlamydophila pneumoniae J138]
gi|16752217|ref|NP_445585.1| type III secretion inner membrane protein SctT [Chlamydophila
pneumoniae AR39]
gi|33242183|ref|NP_877124.1| YOP proteins translocation protein T [Chlamydophila pneumoniae
TW-183]
gi|4377135|gb|AAD18960.1| Yop proteins translocation protein T [Chlamydophila pneumoniae
CWL029]
gi|6672008|dbj|BAA88641.1| YopT tranlocation protein [Chlamydophila pneumoniae]
gi|8163545|gb|AAF73727.1| type III secretion inner membrane protein SctT [Chlamydophila
pneumoniae AR39]
gi|8979197|dbj|BAA99031.1| YopT tranlocation T [Chlamydophila pneumoniae J138]
gi|33236694|gb|AAP98781.1| YOP proteins translocation protein T [Chlamydophila pneumoniae
TW-183]
Length = 289
Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 104/234 (44%), Gaps = 7/234 (2%)
Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80
+ P L P +++ ++++ ++ P + + N+++ + L++ E+ +G
Sbjct: 41 PIFAVAPFLGAKLFPSPIKIGISLSWLAIIFPKVLADTQITNYMDNNLFYVLLVKEMIIG 100
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
V G ++ Q GS I+ G+ L+ + + +P L + W++
Sbjct: 101 IVIGFVLAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGILYHYFVTIIFWLV 160
Query: 140 DFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
H V L+++ IPI I+ + + M Q ++ ++LS+P
Sbjct: 161 GGHRIVISLLLQTLEVIPIHSFFPAEMMSLSAPIWITMIKMCQLCLVMTIQLSAPAALAM 220
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ ++ +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + L F
Sbjct: 221 LMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDYFTLAWF 274
>gi|148261121|ref|YP_001235248.1| type III secretion system inner membrane R protein [Acidiphilium
cryptum JF-5]
gi|326404522|ref|YP_004284604.1| flagellar biosynthetic protein FliR [Acidiphilium multivorum
AIU301]
gi|146402802|gb|ABQ31329.1| type III secretion system inner membrane R protein [Acidiphilium
cryptum JF-5]
gi|325051384|dbj|BAJ81722.1| flagellar biosynthetic protein FliR [Acidiphilium multivorum
AIU301]
Length = 259
Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 104/238 (43%), Gaps = 7/238 (2%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
LI R+ S +M LP + P Q+R+ ++A + ++ P + + + + L
Sbjct: 14 LLIFIRISSLVMALPFMGAGNAPPQIRIGLSIALTAIVAPLIVSGT-IGVPSSIPVFVFL 72
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
V+ E+ +G G L L L G +IS +GL+ + T + + + ++
Sbjct: 73 VLREIVVGLSLGWLTAAIMLSLPVAGQIISYQMGLSSVLLPNVEIGPNSTLVANALSVML 132
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPI------GQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ A+++S+ IP+ G + V + F+ L L+
Sbjct: 133 PAVVFTTGLFMLPVLAIIRSFRVIPLTSTIIGAHLPPAGLLLGFAVRAVSAEFVTALHLA 192
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+PFLF +++ +GL++K+ P + +YF++ P + G L + ++ + + L
Sbjct: 193 APFLFIGLLWQAGLGLMSKVAPSMQVYFVAAPLQLLGGMFLLAILASPMLTVWQDAML 250
>gi|325109029|ref|YP_004270097.1| type III secretion system inner membrane R protein [Planctomyces
brasiliensis DSM 5305]
gi|324969297|gb|ADY60075.1| type III secretion system inner membrane R protein [Planctomyces
brasiliensis DSM 5305]
Length = 330
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/291 (17%), Positives = 102/291 (35%), Gaps = 51/291 (17%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTID-------- 59
M L++ R+ +++ P S IP+Q+R+ A ++++ P L + D
Sbjct: 28 YFMVFLLVLVRLSGLMVIGPFFGHSSIPVQMRMLLAFTLALIVAPALPNVHDRGFQALDQ 87
Query: 60 ----------------------------------------LQNFVNRAYYSKLVMVELFL 79
+V EL +
Sbjct: 88 NQDGQLTGAEIPRGVRESLLQDPVAQPEQLAVSRAEFSRMHAVPSTALDLLWVVGTELLI 147
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + G + V GLQ G G L + + +P L+ ++G AL V+
Sbjct: 148 GMLLGFGVLVVLSGLQLAGETFDQQAGTALNEVFNPALGTSSSPTGQLLFLLGTTALLVM 207
Query: 140 ---DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
D H + L++++ IP+G + +++ + +I +++++P L +
Sbjct: 208 PPFDGHLMMLMNLLQTFEVIPVGLAWVDMSTLDVLRHLISQSLVIAIQIAAPLLAAMALL 267
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++++G L VPQI + + P L L +++ F
Sbjct: 268 SVAMGFLGYTVPQINVLVLGFPIRAMLSLAILVVTMSGATEAVLDLFPRTL 318
>gi|220917692|ref|YP_002492996.1| type III secretion system inner membrane R protein
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219955546|gb|ACL65930.1| type III secretion system inner membrane R protein
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 250
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 1/226 (0%)
Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
P L++ R + P L +P +VRL A+A + + +
Sbjct: 3 LPLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVHAGAGS-PAVPPP 61
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
A + + E G + GL R G ++ + GL + +
Sbjct: 62 PGLAALAGAALAETATGLLAGLAARWTLDAALAAGHLVGLSAGLGYSALVDPITGAESSA 121
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
++ + ++ + H + LV++ P G + + S V + + +
Sbjct: 122 VSQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAPDLAELASRAVGQAALSVALAV 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229
RL+ P + ++ ++ + + ++ PQ+ + + L L
Sbjct: 182 RLAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALY 227
>gi|326624619|gb|EGE30964.1| needle complex export protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 259
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 5/237 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M ++ S L RV LP L+ + R + ++ + P ++
Sbjct: 1 MYFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPH---ALNE 57
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
LV+ E +G + G L+ + G +I G L +S+ ++ +
Sbjct: 58 APPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGID 117
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + + + + + + L KSY E + +
Sbjct: 118 TSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQ 175
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
L L+SP + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 176 NALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 232
>gi|254359073|ref|ZP_04975345.1| type III secretion system protein BsaY [Burkholderia mallei
2002721280]
gi|148028260|gb|EDK86220.1| type III secretion system protein BsaY [Burkholderia mallei
2002721280]
Length = 256
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 8/229 (3%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ + RV LLP L+ I V+ A + L +
Sbjct: 19 AIAIAYARVAPVFYLLPFLNDRTIVNGIVKNTIVFAIILGLWSSF-----AHPPLQGGAL 73
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ + + E G V G+ + + G +I G + S+ + + + L +
Sbjct: 74 AGVALTEAAAGVVLGVALSLPFWVATAVGELIDNQRGATISDSIDPATGVEASALAPFVS 133
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ A + AL SY T+P G + +L L L++P
Sbjct: 134 LFYAAAFLQQGGMLTIVGALEASYATVPAGALFSVD--LPRIGALLTDLVAHGLALAAPV 191
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L V + +GL ++ PQ+ + +S + L
Sbjct: 192 LIVMFVTDALLGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPH 240
>gi|13475307|ref|NP_106871.1| translocation protein in type III secretion system, hrcT
[Mesorhizobium loti MAFF303099]
gi|14026058|dbj|BAB52657.1| translocation protein in type III secretion system; HrcT
[Mesorhizobium loti MAFF303099]
Length = 272
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/250 (17%), Positives = 90/250 (36%), Gaps = 4/250 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-D 59
+ + ++++ L R +M+LP + S +R C A+ F + L + D +
Sbjct: 11 LMHTAIELVVAAGLGAARAIGIMMILPVFTRSQTDGLIRGCLAVGFGLPCLAHVSDALQA 70
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM-GISDS 118
L + L + E+ +G + G + + GLQ G I G+ ++ + +
Sbjct: 71 LDPETRLIEVALLGLKEVLVGALLGTFLGIPLWGLQAAGEFIDNQRGVTNPSAPTDPATN 130
Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQ 176
+ + +GI + + AL SY P+ + + +L
Sbjct: 131 SQASAMGVFLGITAIAIFVASGGLETLIGALYGSYLIWPVYKFYPTLSTQGAMEVLGLLD 190
Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
L +S P +FF + ++S LL + PQ + +S + + + +V
Sbjct: 191 QIMRTALLVSGPVVFFMTLIDVSFMLLRRFAPQFKLTQLSPAIKNLVFPILMVTYAGYLV 250
Query: 237 YQFSHSFLYG 246
Sbjct: 251 EGMKLEITQA 260
>gi|78044979|ref|YP_359854.1| flagellar biosynthetic protein FliR [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997094|gb|ABB15993.1| flagellar biosynthetic protein FliR [Carboxydothermus
hydrogenoformans Z-2901]
Length = 255
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 98/230 (42%), Gaps = 3/230 (1%)
Query: 10 MSLFLIVCRVGSCIMLLP-GLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ +I R+ + P + + +P V+ F + + +LLP + + +
Sbjct: 5 LIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQRN-- 62
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ L++ E +G + G + ++ G + GL+ T + + I
Sbjct: 63 FFLLLIGESLIGLLLGFVTLIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMANFI 122
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ G+L ++ + HH++ L S+ IP G+ L + + + ++ + ++ P
Sbjct: 123 YLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPGLSELLIKIFALVMLVAIEIAIP 182
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
FL ++ ++++G+L + PQ+ ++ +S I L L L + I Y
Sbjct: 183 FLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYF 232
>gi|269302613|gb|ACZ32713.1| bacterial export protein, fliR/mopE/spaR family [Chlamydophila
pneumoniae LPCoLN]
Length = 289
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 103/234 (44%), Gaps = 7/234 (2%)
Query: 21 SCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG 80
+ P L P +++ +++ ++ P + + N+++ + L++ E+ +G
Sbjct: 41 PIFAVAPFLGAKLFPSPIKIGIGLSWLAIIFPKVLADTQITNYMDNNLFYVLLVKEMIIG 100
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
V G ++ Q GS I+ G+ L+ + + +P L + W++
Sbjct: 101 IVIGFVLAFPFYAAQSAGSFITNQQGIQGLEGATSLISIEQTSPHGILYHYFVTIVFWLV 160
Query: 140 DFHHQVFYALVKSYGTIPIGQELN------FGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
H V L+++ IPI I+ + + M Q ++ ++LS+P
Sbjct: 161 GGHRIVISLLLQTLEVIPIHSFFPAEMMSLSAPIWITMIKMCQLCLVMTIQLSAPAALAM 220
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++ ++ +G++N++ PQ+ + ++ + +G LFL L+ I+ Q + L F
Sbjct: 221 LMSDLFLGIINRMAPQVQVIYLLSALKAFMGLLFLTLAWWFIIKQIDYFTLAWF 274
>gi|206889278|ref|YP_002249864.1| putative flagellar biosynthetic protein-like protein
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741216|gb|ACI20273.1| putative flagellar biosynthetic protein-like protein
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 243
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 96/237 (40%), Gaps = 14/237 (5%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
S + RV + LP + +P+ R FA++ S+ ++PF+ V
Sbjct: 11 FYSFIPVFIRVSIILFFLPYIGSRTVPIMFRFFFALSISLAIIPFI--------HVKEEN 62
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + G G+++RV ++ +S IG + PL+
Sbjct: 63 LLISLFNAVVFGMAIGIMVRVIIAAVEIASQWMSMQIGFTIANVFNPQFGELMGPLSIFY 122
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + + +D H +VK++ + + + F + L+L++P
Sbjct: 123 EMFTIALFFSLDLHLSFVEMIVKTFE------FPIKFSFSGNIIAFSYIMFPLALKLAAP 176
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
L ++ NI +G L++++PQ ++F+ P L+ G + LSI I S +F+
Sbjct: 177 VLLVQVLMNIGLGFLSRIMPQANVFFVGFPLLLATGIAVMWLSIPIFTMVLSKAFIN 233
>gi|182440973|dbj|BAG24098.1| HrcT [Pseudomonas cichorii]
Length = 265
Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 104/242 (42%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++L + + R+ C+ L+P + + + +R +A ++ +P + +++ Q+ +
Sbjct: 10 SESIIALTVGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPAIRESLAGQSL-D 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L++ E +G + GLL+ + + G + G + + + + L
Sbjct: 69 WLDLTSLLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELG 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIML 183
++ + +L + + + + + SY P Q + F ++ ++ +TF M+
Sbjct: 129 HMLKQVMILLMILGGGYASLTQIMWDSYLVWPATQWVPVTGPEGFEVYLKLVASTFRFMV 188
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++P + ++ + +L+ PQ+ + ++ P +G FL L + ++ +
Sbjct: 189 LYAAPLVGLLLLIEFGMAILSLYSPQLQVSTLAMPAKSLVGLGFLVLYMPMLTWLGEGRL 248
Query: 244 LY 245
Sbjct: 249 DE 250
>gi|56419771|ref|YP_147089.1| flagellar biosynthesis protein FliR [Geobacillus kaustophilus
HTA426]
gi|56379613|dbj|BAD75521.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426]
Length = 257
Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 6/243 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L+ R S +P S +P ++ A S +L + +
Sbjct: 6 TYFPAFLLVFVRAASFFAAMPLFSYRTVPASYKVGLAFLSSWLLFLAMPKPV----LALD 61
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
Y LV+ E +G GLL + +Q G +I IG + + L
Sbjct: 62 GVYVLLVVKEALVGLALGLLAAILMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGE 121
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
+ ++ LL L ++D HH + + SY +P+ + + G V + F ++
Sbjct: 122 YLHLLALLLLLMLDGHHLLLDGMFYSYHWLPLDRLPHIADGPAVEYVVRVFAAMFAAAVQ 181
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + + ++++G++ + VPQ+ I+ + L L ++ I+ F
Sbjct: 182 MAAPLVGSLFLVDVALGIIARAVPQMNIFAVGFSAKTAAAFLLLLAAVGGILLAARGVFH 241
Query: 245 YGF 247
+ F
Sbjct: 242 FMF 244
>gi|262364749|gb|ACY61306.1| flagellar assembly protein [Yersinia pestis D182038]
Length = 232
Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/220 (18%), Positives = 91/220 (41%), Gaps = 2/220 (0%)
Query: 23 IMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCV 82
+ P + + ++ A+ +I++ P + + ++ L ++ G +
Sbjct: 1 MHFCPVIRHKAFTRKAKIGTALLLAILITPMISQPVVSGELLSIENL-LLAGEQILWGWL 59
Query: 83 HGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFH 142
G ++ + L+ G ++S +GL + + + ++ +I +L + ++ H
Sbjct: 60 FGSMLHLVLAALEAAGQILSMNMGLGMAMMNDPTSGASTAVISQIIFTFSVLIFFTLNGH 119
Query: 143 HQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGL 202
L+KS+ + PIG+ +N ++ S L L+ P F ++ S GL
Sbjct: 120 LLFVTILLKSFSSWPIGEAINDFSL-RSLALSLGWILSSATLLALPTTFIMLIVQGSFGL 178
Query: 203 LNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
LN++ P + ++ + P + G L L L I + H
Sbjct: 179 LNRISPTLNLFSLGFPIGMLFGLLCLLLLAINIPDHYLHL 218
>gi|269976285|ref|ZP_06183281.1| flagellar biosynthetic protein FliR [Mobiluncus mulieris 28-1]
gi|307701592|ref|ZP_07638609.1| putative flagellar biosynthetic protein FliR [Mobiluncus mulieris
FB024-16]
gi|269935614|gb|EEZ92152.1| flagellar biosynthetic protein FliR [Mobiluncus mulieris 28-1]
gi|307613271|gb|EFN92523.1| putative flagellar biosynthetic protein FliR [Mobiluncus mulieris
FB024-16]
Length = 249
Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/244 (13%), Positives = 83/244 (34%), Gaps = 6/244 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + + L R ++ P S +++ + + +
Sbjct: 1 MITIHLGFLTAFMLASIRATVFLVFCPPFSNRAFSGRIKAMLGAGLGLACMQRIGPVAQT 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
++ +++ F+G L++R+ +Q GS++ G + +
Sbjct: 61 D------FFVVECVIQAFIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTN 114
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ + + + L+ + + + L +S+ +P G + N V M
Sbjct: 115 QATFGRVYELTAMALLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTM 174
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L ++ P L + ++ +GLL K+ P + + + P I + + F + ++
Sbjct: 175 SALEIAGPLLLVLFLTDMGMGLLTKVAPAMNAFTLGFPLKIMVTAFFAPAIMVVLPQLVV 234
Query: 241 HSFL 244
Sbjct: 235 KLVD 238
>gi|296531765|ref|ZP_06894587.1| flagellar biosynthesis protein [Roseomonas cervicalis ATCC 49957]
gi|296267904|gb|EFH13709.1| flagellar biosynthesis protein [Roseomonas cervicalis ATCC 49957]
Length = 253
Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 108/242 (44%), Gaps = 4/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ L L+ R+ + ++LLPG + +P ++R+ A+ +
Sbjct: 12 SAELYRLLLVFGRISAALLLLPGFGETTLPARIRILAALLIAFC---LAPLAGPAPAPPG 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ +++E+ G G L R+ +Q G +I IG++ + GI + L
Sbjct: 69 AFGMAAALVLEIAAGAFLGTLSRMMLSAVQVAGQIIGQCIGISNAFAFGI-GADNAAILG 127
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
S++ L+AL+ +D HH AL SY +P+G L + + F + ++L
Sbjct: 128 SMLYAAVLVALFAMDGHHVGLRALADSYRLLPLGDPLPAAASARAVTELAAGAFRLAMQL 187
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S PFL ++FN ++ +N+ +P +P++ I P ++ G L + ++ + ++
Sbjct: 188 SMPFLVLSVLFNAALAGINRALPAMPVFLIGAPAILLTGLSLLAQAAPTLLGEMLGAYAS 247
Query: 246 GF 247
F
Sbjct: 248 AF 249
>gi|293416349|ref|ZP_06658988.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B185]
gi|291431705|gb|EFF04688.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B185]
Length = 257
Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 5/229 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L RV +LP L+ + VR M + + PF + +
Sbjct: 13 LAGAALGFARVAPVFFILPFLNNGVLSGVVRTAVIMLVVLGMTPFGPAEREAVMNILGWP 72
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ E F+G V G L+ G + G L +S+ ++ + + + + +
Sbjct: 73 LL---LREAFIGIVLGCLLSWPFWVFHAIGCIFDNQRGATLSSSIDPANGVDTSEMATFM 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + + L SY G + ++ L L+SP
Sbjct: 130 NLFSAVVYLQGGGMQMMLETLRHSYQV--CGLTTGCMPALPLLLGIIGKITARALVLASP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
L ++ I +GLL++ PQ+ + IS L L + ++
Sbjct: 188 VLAVLLLGEIMLGLLSRFAPQMNAFAISLTVKSLLALFILLIYFSPVLS 236
>gi|171915732|ref|ZP_02931202.1| translocation protein in type III secretion [Verrucomicrobium
spinosum DSM 4136]
Length = 262
Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/238 (14%), Positives = 96/238 (40%), Gaps = 3/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
I++++ + R+ + + + P + +I R ++ + + +P + + + + +
Sbjct: 11 ILLTVAFTLPRMMAALSVSPFFAQQFITGIARQVVIISLTTLAIPMVHYS-GVPDNPDML 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y ++ E+ +G + G + + + TG I G ++ + +P L
Sbjct: 70 YLIGVLTKEVAIGMLLGFVTGMAFWIAEGTGFFIDNQRGSSMAEMFDPMSGESTSPFGLL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRL 185
I + +V + SY P+ F+++L +++
Sbjct: 130 FARIIGVFFFVGGGFMAFLTIMYDSYVHWPVFSWFPKMEPAFPVVFLHVLDKMMGLIVTF 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++P + + +GL+N+ PQ+ ++F++ P G+ ++ + + +V + F
Sbjct: 190 AAPLVIAMFIAEFGMGLMNRFSPQLNVFFLAMPVKSGIAAVLIIFYLVFLVGFLRNEF 247
>gi|294140999|ref|YP_003556977.1| type III secretion system apparatus protein, SpaR/YscT family
[Shewanella violacea DSS12]
gi|293327468|dbj|BAJ02199.1| type III secretion system apparatus protein, SpaR/YscT family
[Shewanella violacea DSS12]
Length = 229
Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 1/208 (0%)
Query: 35 PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGL 94
+R + F++ L + D ++ + L E+ +G + G + +
Sbjct: 3 SALIRNSLVLLFALPTLHAMADMQEVILQADILGVVNLYGKEILVGFLLGFCAAIPFWAI 62
Query: 95 QFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYG 154
G VI T G ++ T + L + L + + V + + A+ +SY
Sbjct: 63 DMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNHLLTAMYQSYN 122
Query: 155 TIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY 213
+P G EL + + F + L + P + I+ ++++GL+N+ Q+ ++
Sbjct: 123 ELPPGFELNLSQQLLTFFNQEWLLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVF 182
Query: 214 FISTPYLIGLGSLFLCLSIEIIVYQFSH 241
F+S P L L L S++ + +
Sbjct: 183 FLSMPIKSALVLLLLIYSLQFALSHYLE 210
>gi|46398250|gb|AAS91804.1| AscT [Aeromonas hydrophila]
Length = 262
Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 95/236 (40%), Gaps = 5/236 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ M++ L++ R SC ++LP L + +R + ++ P + DT+ +
Sbjct: 7 QAQMLAYTLLLPRFISCFVMLPVLGKQMLGGAMIRNGVVCSLALYAYPMIADTLPPS--I 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ LV E+ LG + G + + ++ +G +I G + + S +P
Sbjct: 65 GAMELALLVAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMGSLFNPSLGSQTSPT 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIM 182
L+ + + + AL +SY + P+ S F ++
Sbjct: 125 GLLLTQTLITLFFASGAFLALLTALFQSYTSWPVAYFFPTIGSQWVSFFYGQFSQMLLLC 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L++P L + + L+++ P + ++ ++ P + SL L + I++++
Sbjct: 185 TLLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAVASLLLVIYIKLMMDH 240
>gi|76574807|gb|ABA47281.1| HrcT [Pseudomonas cichorii]
Length = 265
Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 102/242 (42%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++L + + R+ C+ L+P + + + +R +A ++ +P + ++ Q +
Sbjct: 10 SESIIALTVGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPSIRASLAGQTL-D 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L++ E +G + GLL+ + + G + G + + + + L
Sbjct: 69 WLDLTALLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELG 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIML 183
++ + +L + + + + + SY P Q + F ++ ++ +TF M+
Sbjct: 129 HMLKQVMILLMILGGGYASLTQIMWDSYLVWPATQWVPVTGPEGFEVYLKLVASTFRFMV 188
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++P + ++ + +L+ PQ+ + ++ P +G FL L + ++ +
Sbjct: 189 LYAAPLVGLLLLIEFGMAILSLYSPQLQVSTLAMPAKSLVGLGFLVLYMPMLTWLGEGRL 248
Query: 244 LY 245
Sbjct: 249 EE 250
>gi|301165898|emb|CBW25471.1| putative flagellar export protein [Bacteriovorax marinus SJ]
Length = 259
Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 91/243 (37%), Gaps = 1/243 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFL-WDTIDLQNFV 64
+ +++ +L R + LP +P V++ + + P L + +
Sbjct: 9 QYSVIAFWLCFTRFVAVSFQLPIFDNGAVPNLVKILATLVMTYAFFPMLEGEILKDVVHY 68
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ L + +G + G +++ G++I+ +G + S S P
Sbjct: 69 GVDGFWYLTVFNTVVGLLVGFFVKIIMSIYTAAGALITQQVGFGAVSYFDPSSSQQVGPF 128
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
LI L+ + +F L S+ +I + F ++ + + F+ L
Sbjct: 129 EQLIKWTVLIIILSSGALLPMFKGLYSSFFSISALEMGKFAASPEFYLRLFKNMFLSALM 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
LSSP +F ++ +G++ + VPQ+ + +S IGLG L + + +
Sbjct: 189 LSSPMIFTNMLIMTILGIIARTVPQMNVIMVSFAVNIGLGLLVFVATSQEFFRVAIKMYT 248
Query: 245 YGF 247
Sbjct: 249 DNL 251
>gi|291326995|ref|ZP_06126594.2| type III secretion apparatus protein SpaR/YscT/HrcT [Providencia
rettgeri DSM 1131]
gi|291312159|gb|EFE52612.1| type III secretion apparatus protein SpaR/YscT/HrcT [Providencia
rettgeri DSM 1131]
Length = 264
Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 5/233 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTID 59
+ + ++ + L R+ + LLP LS + ++ C ++ L PF
Sbjct: 12 LYFIFQEGLIKIALAWLRIAPVMFLLPFLSNKLLNGGIIKNCVVAYIALGLWPFFSSY-- 69
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ + + + + E+ +G V L++ + + G +I G + + + +
Sbjct: 70 -EIQWDEINFVDVFIYEISIGLVLALILALPFMIANIIGELIDAQRGETISSIVDPASGT 128
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L L+ I + + +Q+ V+SY +P N L
Sbjct: 129 EASELAVLLSHITCMIFLAQNGMYQLANLFVQSYQLLPFAHGFTSFNSLP-LGEWLNKMV 187
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
+ + L++P L + +++GL ++ PQ+ + +S + L
Sbjct: 188 VNGVVLTAPILVTLFITEVALGLYSRFCPQLNAFSLSLAIKSIIAFCVFLLYF 240
>gi|99082794|ref|YP_614948.1| flagellar biosynthetic protein FliR [Ruegeria sp. TM1040]
gi|99039074|gb|ABF65686.1| Flagellar biosynthetic protein fliR [Ruegeria sp. TM1040]
Length = 259
Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/239 (22%), Positives = 112/239 (46%), Gaps = 5/239 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ R+G+ ++ G IP Q+RL + F+ ++ P L Q
Sbjct: 18 FWHAAIVFLRIGAMTSIMLGFGEQLIPTQIRLVAGLVFTAIVAPALPQMPMPQTV---MQ 74
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y+ L+ E+ +G GL +R++ LQ GS+ + L+ +G + + L +++
Sbjct: 75 YAGLMATEVVVGLALGLGLRMFMHMLQTAGSIAAQCTSLS--QVLGGAGADPMPALGAVL 132
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
I G+ ++DFH +++SY P+G + + V+ + TF L++P
Sbjct: 133 WISGIAVAVMLDFHIHAAQLMIRSYDLFPVGIFPSASGLSEWGVHRVSATFAQAFTLAAP 192
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
FL +V+N+++G++N+ + Q+ + F+ P + G L + +++ + H L F
Sbjct: 193 FLITAVVYNLTLGVINRAMTQLMVVFVGAPVITFGGLAILMIGAPMMLEVWGHGLLMFF 251
>gi|319790411|ref|YP_004152044.1| flagellar biosynthetic protein FliR [Thermovibrio ammonificans
HB-1]
gi|317114913|gb|ADU97403.1| flagellar biosynthetic protein FliR [Thermovibrio ammonificans
HB-1]
Length = 259
Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 97/237 (40%), Gaps = 4/237 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
S + R+ S + P +S +P+ VR+ +AFS + F+ +
Sbjct: 12 FWSFLFVFLRLSSLFIAFPFISGLNVPLTVRVVLVLAFSFFVSSFVTVE---PGSLTLFE 68
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ V+ EL LG L++ ++ F IS +GL + + + + L
Sbjct: 69 FALAVLKELLLGLSLALVVYIFYAVFLFAADQISYLMGLTVVNMFDPTFGM-VSVLGRFF 127
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + + ALV+S+ IP G G +F F +++ P
Sbjct: 128 VYVFYALFFATGAYRLFIGALVESFKLIPPGGASFKGPLFKFLFQEAGLIFSFGFQMAFP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
FL + N+++ L+N+L+PQI ++ + P + +G + L + ++V +
Sbjct: 188 FLLVLFITNLALALVNRLIPQINVFIVGLPLQLFVGLVALSVGFSVVVLFGENLIQR 244
>gi|218515804|ref|ZP_03512644.1| flagellar biosynthesis protein FliR [Rhizobium etli 8C-3]
Length = 161
Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 70/121 (57%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI L+P LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIALMPLLWDTVYP 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y L+ E +G ++G+L R+YTLG+QF ++I+ +G S + +
Sbjct: 61 AVHTGAGTYIGLIFSESLVGLMYGMLARIYTLGMQFAATIIAMMVGYTQPGSADVIEDAP 120
Query: 121 E 121
E
Sbjct: 121 E 121
>gi|32490797|ref|NP_871051.1| hypothetical protein WGLp048 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166003|dbj|BAC24194.1| fliR [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 258
Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 4/241 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + RV + P + IP ++++ ++ FS ++ L +
Sbjct: 14 WINQNIWAIARVNGLFISAPVFNEKVIPRKIKILISVLFSFLVSQELPLNNISIISIEGF 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y + ++ F GL++++ ++F+G +I +GL+ ++
Sbjct: 74 YVLIIQIIIGFF---IGLILQLSFCSIKFSGELIGLQMGLSFAVFFDHISGPNSPIISRF 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLS 186
+I +L D H V L S+ IPIG IF S +N F L LS
Sbjct: 131 FNLILILIFLSFDAHLTVLDILFNSFKLIPIGINFKFNDEIFFSIINFSGIIFANGLFLS 190
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI G+LN+ PQ I+ I + +G L + + + +
Sbjct: 191 IPSITMLLSLNILFGILNRFTPQFSIFVIGFSLTLLIGLLSIYIILNNFQKLSTDLIFNT 250
Query: 247 F 247
F
Sbjct: 251 F 251
>gi|85710191|ref|ZP_01041256.1| Flagellar protein FliR [Erythrobacter sp. NAP1]
gi|85688901|gb|EAQ28905.1| Flagellar protein FliR [Erythrobacter sp. NAP1]
Length = 264
Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 2/242 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
E + + + R G+ ++ P + + Q R A+ ++ + W + +
Sbjct: 12 EEQLWQILFLSIRCGAALLAAPMVGGMVVAPQFRALIAIVLAVFV--STWIPLPPLPEMM 69
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
V+ E+ +G G +++V IS +GL + TS+ + L
Sbjct: 70 SFAAVLAVVQEVVIGAALGFVLQVAFAVPLIAAEQISGTMGLAIATSIDPASGAQSGALG 129
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ G+I L + I H F L++SY +P G V +
Sbjct: 130 TYFGLILTLLFYAIGGHLLWFELLIESYRILPAGTHAFAETSARDIVAFAGYGIATAAAI 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
P + + + G +++ P + ++ + P + G L + + I+V QF+ +
Sbjct: 190 GLPVVLVLLCVQVVTGTISRSAPALNLFALGLPAGVLAGIAALIVVMPIMVEQFTALLVA 249
Query: 246 GF 247
Sbjct: 250 TL 251
>gi|302185356|ref|ZP_07262029.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
syringae 642]
gi|256259404|gb|ACU65041.1| HrcT [Pseudomonas syringae pv. syringae]
Length = 268
Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 92/240 (38%), Gaps = 3/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L + R+ C+ L+P ++ R A +++ P + +
Sbjct: 9 ELFNGIALSMARLYPCMFLVPAFLFKHLKGLPRYAVLAALALIPAPGIGQELSRLGESWT 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L+ E+ LG + GL++ + G ++ G + + TPL+
Sbjct: 69 GIF-FLIFKEMVLGTLMGLVLYLPFFLFSAVGVLLDNQRGALTGGQLNPALGADVTPLSQ 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLR 184
L ++ L +I + + SY P F ++ ++ TF +L
Sbjct: 128 LFEETLVMLLIIIGGLPLLMQVIWDSYQIWPATSWWPALQAQGFEVYLGLVNDTFTHLLL 187
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
S+PF+ ++ ++ L+ PQ+ ++ ++ P +G FL + + ++ +
Sbjct: 188 YSAPFIALLLLVEAAMALIGIYSPQLNVFILAMPAKCVIGLAFLVIYLPTLLDLGTERLE 247
>gi|227876758|ref|ZP_03994867.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC
35243]
gi|306817705|ref|ZP_07451447.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC
35239]
gi|227842655|gb|EEJ52855.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC
35243]
gi|304649519|gb|EFM46802.1| flagellar biosynthesis protein FliR [Mobiluncus mulieris ATCC
35239]
Length = 252
Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/238 (13%), Positives = 82/238 (34%), Gaps = 6/238 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + L R ++ P S +++ + + +
Sbjct: 10 GFLTAFMLASIRATVFLVFCPPFSNRAFSGRIKAMLGAGLGLACMQRIGPVAQTD----- 64
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +++ F+G L++R+ +Q GS++ G + + +
Sbjct: 65 -FFVVECVIQAFIGFSMALMVRIILAAIQMAGSLLDLEGGFAMAQAFDPLTMTNQATFGR 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + L+ + + + L +S+ +P G + N V M L ++
Sbjct: 124 VYELTAMALLFTTNGYQLLIMGLARSFTAMPPGMMFDMSNYAERLVYRFAELTMSALEIA 183
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
P L + ++ +GLL K+ P + + + P I + + F + ++
Sbjct: 184 GPLLLVLFLTDMGMGLLTKVAPAMNAFTLGFPLKIMVTAFFAPAIMVVLPQLVVKLVD 241
>gi|323530313|ref|YP_004232465.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp.
CCGE1001]
gi|323387315|gb|ADX59405.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp.
CCGE1001]
Length = 271
Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 77/237 (32%), Gaps = 4/237 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L + R+ + L P + + VR + FS + + L +
Sbjct: 19 LTVLGVCSVRLFVMLYLFPPTADGILQGVVRNGLVLLFSSFIA--YGQPVSLYTSLTGTA 76
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + E +G + G + G + G N TP +L+
Sbjct: 77 LVVIGLREAAIGLLLGFAASTVFWVAEGAGIYVDDLAGYNNVQITNPLREEQSTPTGTLL 136
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLS 186
+ +A W + AL +SY P+ S + + +L+
Sbjct: 137 AQVASVAFWTFGGMTFLLGALYESYHWWPLTAATPVPANVLESFVLQQTDSLMQTTAKLA 196
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+P + ++ + + G K ++ + +S P L + L L + I V Q
Sbjct: 197 APMMLMLLLVDFAFGFAAKSAQKLELMTLSQPVKGALTVMMLALFVGIFVDQVRDQL 253
>gi|307725649|ref|YP_003908862.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp.
CCGE1003]
gi|307586174|gb|ADN59571.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia sp.
CCGE1003]
Length = 271
Score = 89.6 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 4/237 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L + R+ + L P + + VR + FS + + L ++
Sbjct: 19 LTVLGVCSVRLFVVLYLFPPTADGILQGVVRNGVVLLFSSFIA--YGQPVSLYTSLSGTA 76
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + E +G + G + G + G N TP +L+
Sbjct: 77 LVVIGLREAAIGLLLGFAASTVFWVAEGAGIYVDDLAGYNNVQITNPLREEQSTPTGTLL 136
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLS 186
+ +A W + AL +SY P+ S + + +L+
Sbjct: 137 AQVASVAFWTFGGMTFLLGALYESYHWWPLTAATPVPANVLESFVLQQTDSLMQTTAKLA 196
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+P + ++ + + G K ++ + +S P L + L L + I V Q
Sbjct: 197 APMMLMLLLVDFAFGFAAKSAQKLELMTLSQPVKGALTVMMLALFVGIFVDQVRDQL 253
>gi|227820527|ref|YP_002824498.1| type III secretion component, RhcT [Sinorhizobium fredii NGR234]
gi|227339526|gb|ACP23745.1| type III secretion component, RhcT [Sinorhizobium fredii NGR234]
Length = 273
Score = 89.6 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/238 (13%), Positives = 90/238 (37%), Gaps = 2/238 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + + R I++ P + +R A+A ++ L+P TI ++
Sbjct: 17 VLAGTAIAMARALGMIVITPAFVRLGLTGLIRSGVAIAIALPLIPGFTTTIMNGANLSTL 76
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L++ E+ LG + G++ + + G ++ G + + + +
Sbjct: 77 MVTGLILKEIILGVIIGVMFGIPFWAAEVAGDLVDLQRGSTSAQLVDPLQATETSIAGTF 136
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + + +SY P+ + + +L I + L
Sbjct: 137 FVLALVALFFKSGGFSLLADTYYRSYEIWPVTSFSPALGSGAAEAVLAILDRVMQIGVLL 196
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+P + ++ ++ + L+++ PQ+ ++ +S L ++ + L + ++ F
Sbjct: 197 IAPIVLALLIADLMLAYLSRMSPQLHVFDLSLAIKNLLFAILIVLYLNYLLQYMVAEF 254
>gi|170690595|ref|ZP_02881762.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia graminis
C4D1M]
gi|170145030|gb|EDT13191.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia graminis
C4D1M]
Length = 271
Score = 89.6 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 77/237 (32%), Gaps = 4/237 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+ L + R+ + L P + + VR + FS + + L +
Sbjct: 19 LTVLGVCSVRLFVMLYLFPPTADGILQGVVRNGVVLLFSSFIA--YGQPVSLYTSLTGTA 76
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ + E +G + G + G + G N TP +L+
Sbjct: 77 LVVIGLREAAIGLLLGFAASTVFWVAEGAGIYVDDLAGYNNVQITNPLREEQSTPTGTLL 136
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLS 186
+ +A W + AL +SY P+ S + + +L+
Sbjct: 137 AQVASVAFWTFGGMTFLLGALYESYHWWPLSAATPVPANVLESFVLQQTDSLMQTTAKLA 196
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+P + ++ + + G K ++ + +S P L + L L + I V Q
Sbjct: 197 APMMLMLLLVDFAFGFAAKSAQKLELMTLSQPVKGALTVMMLALFVGIFVDQVRDQL 253
>gi|291519580|emb|CBK74801.1| Flagellar biosynthesis pathway, component FliR [Butyrivibrio
fibrisolvens 16/4]
Length = 237
Score = 89.6 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 3/226 (1%)
Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81
+++ P S+S P +V++ F+ S++L + N+ Y+ LV+ E G
Sbjct: 2 FVVVAPFFSISNTPARVKIGFSALVSLLLYFVV--DFSALNYSTVVGYAFLVVREALTGL 59
Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDF 141
+ G + G++I IGL++ + T SL ++ L +
Sbjct: 60 IIGFSTYCCNFIILLAGNMIDMNIGLSMAQEYDPTLRTETTITGSLYNNFIMILLVLSGM 119
Query: 142 HHQVFYALVKSYGTIPIGQELN-FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200
H +F A ++ IPIG + + ++F S + F+I R+ P ++ N +
Sbjct: 120 HRYIFKAFCDAFTLIPIGGAIFRWDSLFKSTAIFMADVFVIAFRIILPVFAVIMLLNAIL 179
Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
G+L K+ PQI ++ + I +G L L++ ++ F
Sbjct: 180 GILVKVAPQIHMFSVGAQMKIIVGFTILFLTVFLLPDIAGFIFKEM 225
>gi|16761665|ref|NP_457282.1| virulence associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143149|ref|NP_806491.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213052432|ref|ZP_03345310.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213425710|ref|ZP_03358460.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213580231|ref|ZP_03362057.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213609306|ref|ZP_03369132.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213649912|ref|ZP_03379965.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213853012|ref|ZP_03382544.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289804462|ref|ZP_06535091.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289829390|ref|ZP_06547002.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25355678|pir||AD0851 secretory protein (associated with virulence) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16503966|emb|CAD05995.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138782|gb|AAO70351.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 263
Score = 89.6 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ S L RV LP L+ + R + ++ + P ++
Sbjct: 11 HLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPH---ALNEAPPFLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E +G + G L+ + G +I G L +S+ ++ + + + +
Sbjct: 68 VAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + + L KSY E + + L L+
Sbjct: 128 FLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 186 SPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236
>gi|83716221|ref|YP_439035.1| type III secretion system protein BsaY [Burkholderia thailandensis
E264]
gi|83650046|gb|ABC34110.1| type III secretion system protein BsaY [Burkholderia thailandensis
E264]
Length = 251
Score = 89.6 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 8/227 (3%)
Query: 21 SCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
LLP L+ I V+ A + L P + + + + E
Sbjct: 24 PVFYLLPFLNDRTIVNGLVKNTIVFAVIVGLWPSF-----AHPPLRGGALAGIALTEAAA 78
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G V G+ + + G +I G + S+ + + + L + + A
Sbjct: 79 GLVLGVALSLPFWVATAIGELIDNQRGATISDSIDPATGVEASALAPFVSLFYAAAFLQQ 138
Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199
+ AL SY T+P G F +L L L++P L V +
Sbjct: 139 GGMLTIVGALESSYATVPAGA--PFSADLPRVGALLTDLVAHGLALAAPVLIVMFVTDAL 196
Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+GL ++ PQ+ + +S + L + L+
Sbjct: 197 LGLFSRFCPQVNAFSLSLTVKSIVAFAVFHLYFVYAAPHELTALLHA 243
>gi|218288312|ref|ZP_03492611.1| type III secretion system inner membrane R protein
[Alicyclobacillus acidocaldarius LAA1]
gi|218241671|gb|EED08844.1| type III secretion system inner membrane R protein
[Alicyclobacillus acidocaldarius LAA1]
Length = 258
Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 88/236 (37%), Gaps = 1/236 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ R I+ P LS +Y P ++ A+A + +P + ++ +
Sbjct: 12 FLLMAARTSGFILAAPILSSAYWPNLAKVALALALASFAVPSVHASVP-DIATQPGAFVV 70
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+E +G V G + + G ++ IG+ + +S+ +
Sbjct: 71 DFALEAVVGVVLGFVATWIFNTINIAGQLVDLQIGMAVADLAMPGFGQQAGVFSSVYNVW 130
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L + + A+++S+ IPI + + + T ++ + ++ P
Sbjct: 131 FSLLFIGMGGLGGLSSAVLESFRLIPIADWHLPTDWIALCAQTMGTVMLMGVDVALPVFA 190
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ +++ LL + VPQ+ + + P + +G +++ + V F F
Sbjct: 191 SLFLCDVTFALLARAVPQMNAFVVELPAKLFVGLASFAVALPVTVGLFRQLLNVVF 246
>gi|258511390|ref|YP_003184824.1| type III secretion system inner membrane R protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478116|gb|ACV58435.1| type III secretion system inner membrane R protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 258
Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 88/236 (37%), Gaps = 1/236 (0%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ R I+ P LS +Y P ++ A+A + +P + ++ +
Sbjct: 12 FLLMAARTSGFILAAPILSSAYWPNLAKVALALALASFAVPSVHASVP-DIATQPGPFVV 70
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+E +G V G + + G ++ IG+ + +S+ +
Sbjct: 71 DFALEAVVGVVLGFVATWIFNTMNIAGQLVDLQIGMAVADLAMPGFGQQAGVFSSVYNVW 130
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L + + A+++S+ IPI + + + T ++ + ++ P
Sbjct: 131 FSLLFIGMGGLGGLSSAVLESFRLIPIADWHLPTDWIALCAQTMGTVMLMGVDVALPVFA 190
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ +++ LL + VPQ+ + + P + +G +++ + V F F
Sbjct: 191 SLFLCDVTFALLARAVPQMNAFVVELPAKLFVGLASFAVALPVTVGLFRQLLNLVF 246
>gi|14719867|gb|AAK73231.1| SctT [Burkholderia pseudomallei]
gi|48479046|gb|AAT44846.1| putative transmembrane protein [Burkholderia pseudomallei]
Length = 240
Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 72/218 (33%), Gaps = 4/218 (1%)
Query: 23 IMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCV 82
+ + P + VR + F + ++ + E +G V
Sbjct: 1 MSVFPPTADGLSQGVVRNALVILFGSYVA--YGQPAGFVQTLHGTPLIVTGLREAVIGVV 58
Query: 83 HGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFH 142
G+ ++ G I G N + TP +L+ + +A W
Sbjct: 59 LGIAASTVFWAIEGAGCYIDDLTGYNNVQMTNPARGEQSTPTATLLTQVATVAFWTFGGM 118
Query: 143 HQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200
+ L +SY PI + V+ + ++ +L++P + ++ + +
Sbjct: 119 TFLLGTLYESYRWWPITLTFPRMPALIEAFAVSQTDSLMQMVTKLAAPMMLVLLLIDFAF 178
Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
G K ++ + +S P + L L L + V Q
Sbjct: 179 GFAAKSASKLDLMGLSQPVKGAVTVLMLALFVGTFVDQ 216
>gi|323143901|ref|ZP_08078563.1| type III secretion apparatus protein SpaR/YscT/HrcT [Succinatimonas
hippei YIT 12066]
gi|322416328|gb|EFY07000.1| type III secretion apparatus protein SpaR/YscT/HrcT [Succinatimonas
hippei YIT 12066]
Length = 272
Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 94/244 (38%), Gaps = 7/244 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA- 67
+ + L R+G I ++P + + V++ +A I L PF+ I+ +F
Sbjct: 17 LSAFILGSIRIGVFIAMVPFFGPQ-VSVAVKMPITVALYIPLHPFMLTIIEPLSFSAVGD 75
Query: 68 --YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ +V+ E+ +G + L + G +I G ++ S I +PL
Sbjct: 76 FFGFIIIVLKEILIGIIFAWLCSLIFYVALSAGVIIDNQRGASMAQSADILSGAESSPLG 135
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN---FGNIFSSFVNMLQTTFMIM 182
S++ + + + ++ P + L N L
Sbjct: 136 SVLFLAMVTLFFASGAFLAFLNIFYTTFIAWPPTEFLPALLSSNTAIFSAQSLNWMMEQT 195
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + +PF+ ++ +I++GL+N+ PQ+ ++ +S P G+ + + + +
Sbjct: 196 VLVCAPFILVALLCDIALGLINRFAPQLNVFILSMPIKSGVCAFLIIFYLSPFLDHSEDL 255
Query: 243 FLYG 246
F Y
Sbjct: 256 FNYM 259
>gi|310767464|gb|ADP12414.1| Surface presentation of antigens protein (Spa29 protein), Type III
secretion apparatus [Erwinia sp. Ejp617]
Length = 256
Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 91/249 (36%), Gaps = 6/249 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + ++ + R+ +LP L + + + +I+ LW +
Sbjct: 6 LYFNFQHYLLIYAIAYARLAVVFYMLPILGERILSHLIIKNSIITLTII---GLWPCFEN 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ R +Y LV E +G + ++ + + G ++ G ++ ++ +
Sbjct: 63 VAIIERGWYLLLV-QECIVGLILATVLCLPFWIVIGLGEILDNQRGASMADNIDPLNGGQ 121
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L L+ + + + + A V+SY P + + + +L
Sbjct: 122 NSILAGLLNFTFGMIFFTNNGMRLLMEAFVESYQIFPPSSKWLGFH-WQEAGRILVILIE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL-FLCLSIEIIVYQF 239
+ L++P + +V I +G+ + PQ+ + +S + + FL + +
Sbjct: 181 SGILLAAPVIIVMMVAEILLGVFARYCPQLNPFSLSLTIKSFITFITFLFYGFYALAEKP 240
Query: 240 SHSFLYGFF 248
F G F
Sbjct: 241 LDLFSTGIF 249
>gi|259908636|ref|YP_002648992.1| Surface presentation of antigens protein (Spa29 protein), Type III
secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|224964258|emb|CAX55765.1| Surface presentation of antigens protein (Spa29 protein), Type III
secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|283478608|emb|CAY74524.1| Surface presentation of antigens protein SpaR [Erwinia pyrifoliae
DSM 12163]
Length = 256
Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 92/249 (36%), Gaps = 6/249 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + ++ + R+ +LP L + + + +I+ LW +
Sbjct: 6 LYFNFQHYLLIYAIAYARLAVVFYMLPILGERILSHLIIKNSIITLTII---GLWPCFEN 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ R +Y LV E +G + ++ + + G ++ G ++ ++ +
Sbjct: 63 VAIIERGWYLLLV-QECIVGLILATVLCLPFWIVIGLGEILDNQRGASMADNIDPLNGGQ 121
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L L+ + + + + A V+SY P + + + +L
Sbjct: 122 NSILAGLLNFTFGMIFFTNNGMRLLMEAFVESYHIFPTSSKWLGFH-WQEAGRILVMLIE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL-FLCLSIEIIVYQF 239
+ L++P + +V I +G+ + PQ+ + +S + + FL + +
Sbjct: 181 SGIMLAAPVIIVMMVAEILLGVFARYCPQLNPFSLSLTIKSFITFITFLFYGFNALAEKP 240
Query: 240 SHSFLYGFF 248
+ F G F
Sbjct: 241 LNLFSTGIF 249
>gi|167005766|ref|ZP_02271524.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 205
Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/195 (20%), Positives = 86/195 (44%)
Query: 53 FLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS 112
+L+ L++ +++ ++ E+ G + GL++++ + G I+ +G + +
Sbjct: 2 YLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAFTMGFTMASI 61
Query: 113 MGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV 172
+ S + + ++ ++ L+ D HH + L S G I +G N+
Sbjct: 62 LDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGFYPHENLMHYLN 121
Query: 173 NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
+ F+I +S P L ++ ++ GLL K +PQ + I P I LG + L +
Sbjct: 122 MGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPIKIALGFVVLIAIL 181
Query: 233 EIIVYQFSHSFLYGF 247
+++ F + L F
Sbjct: 182 LVMMQYFKNLILELF 196
>gi|167030916|gb|ABZ05784.1| HrcT [Pectobacterium carotovorum subsp. carotovorum]
Length = 267
Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 100/230 (43%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++ L + R+ C +L+P S++ + R ++ +++ P + + L ++
Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMTRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ E+ +G + L++ + + G++ G + + + TPL L
Sbjct: 70 MLPGLLLKEVIVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185
+ +L L + + + SY P+ L F ++++L TF ++
Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYQIWPVLSWLPAPGEQGFEVYLSLLADTFTHLVVY 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI LL+ PQ+ ++ +S P +G F + + ++
Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIVYLPVL 239
>gi|107101123|ref|ZP_01365041.1| hypothetical protein PaerPA_01002155 [Pseudomonas aeruginosa PACS2]
Length = 262
Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 5/232 (2%)
Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ SC ++LP L+ + VR A + ++ P + ++ ++ + L+ E
Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPA--LDALDIALLIGKE 76
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ LG + G + + ++ TG +I G L +++ S +P L+ +
Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTLNPSLGSQTSPTGLLLTQTLITLF 136
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + +L +SY + P+ F M+ ++P L
Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQFGSQWVEFFYAQFSQMLMLCALFAAPLLIAMF 196
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + L+++ P + ++ ++ P + SL L L + I++ + L
Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDALLLA 248
>gi|322715874|gb|EFZ07445.1| needle complex export protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 263
Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ S L RV LP L+ + R + ++ + P + +
Sbjct: 11 HLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEVP---PFLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E +G + G L+ + G +I G L +S+ ++ + + + +
Sbjct: 68 VAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + + L KSY E + + L L+
Sbjct: 128 FLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 186 SPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236
>gi|168235928|ref|ZP_02660986.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194737958|ref|YP_002115840.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|194713460|gb|ACF92681.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197290723|gb|EDY30077.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 263
Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 83/231 (35%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ S L RV +P L+ + R + ++ + P ++
Sbjct: 11 HLVASAALGFARVAPIFFFMPFLNSGVLSGAPRNAIIILVALGVWPH---ALNEAPPFLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E +G + G L+ + G +I G L +S+ ++ + + + +
Sbjct: 68 VAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + + L KSY E + + L L+
Sbjct: 128 FLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 186 SPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236
>gi|292487014|ref|YP_003529884.1| type III secretion protein HrcT [Erwinia amylovora CFBP1430]
gi|292900601|ref|YP_003539970.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|1181175|gb|AAB06007.1| HrcT [Erwinia amylovora]
gi|291200449|emb|CBJ47578.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552431|emb|CBA19476.1| Type III secretion protein HrcT [Erwinia amylovora CFBP1430]
gi|312171083|emb|CBX79342.1| Type III secretion protein HrcT [Erwinia amylovora ATCC BAA-2158]
Length = 265
Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L R+ C++L+P S + + VR +A S++ L + +Q +
Sbjct: 11 QFLFALTLGAARIYPCLILMPVFSFNILKGMVRTGVVLALSLMPAIGLQAQLAVQMP-DW 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ +G + GLL+ + Q G++ G + + + TPL
Sbjct: 70 PQLIGLILKEVTIGILLGLLLGMPFWLFQSAGALFDNQRGALIGGQLNPALGSDVTPLGL 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L+ +L L + + + SY P+ Q L F ++ +L TF ++
Sbjct: 130 LLQQTLILLLILGIGLSGITQIIWDSYRIWPVLQWLPLPHEEGFKQYLALLADTFTHIII 189
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ P + ++ + SI +L+ PQ+ ++ +S P +G LF L I + L
Sbjct: 190 YAGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFVLYIPTLNALGEDRIL 249
Query: 245 Y 245
Sbjct: 250 Q 250
>gi|21241187|ref|NP_640769.1| HrcT protein [Xanthomonas axonopodis pv. citri str. 306]
gi|30524892|gb|AAP34337.1|AF499777_5 HrcT [Xanthomonas axonopodis pv. glycines]
gi|21106494|gb|AAM35305.1| HrcT protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 276
Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 89/238 (37%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV ++LP + +P R S + D +
Sbjct: 18 LLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPADALAKIQTV 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+V E F+G + G + G +I G N TP++++
Sbjct: 76 GLVGVVFKEAFIGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + + + +++L
Sbjct: 136 LLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESFVIQQSDSMMAAVVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + ++ +++IGL+ + ++ +S P L L L L + + QF +
Sbjct: 196 SAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQFGEAL 253
>gi|78045990|ref|YP_362165.1| HrcT protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|984885|gb|AAB08463.1| HrpB8 [Xanthomonas euvesicatoria]
gi|78034420|emb|CAJ22065.1| HrcT protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 276
Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 90/238 (37%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV ++LP + +P R S + D + A
Sbjct: 18 LLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPADALAKIQTA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+V E F+G + G + G +I G N TP++++
Sbjct: 76 GLVGVVFKEAFVGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + + + +++L
Sbjct: 136 LLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESFVIQQSDSMMAAVVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + ++ +++IGL+ + ++ +S P L L L L + + QF +
Sbjct: 196 SAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQFGEAL 253
>gi|110677563|ref|YP_680570.1| flagellar biosynthetic protein FliR [Roseobacter denitrificans OCh
114]
gi|109453679|gb|ABG29884.1| flagellar biosynthetic protein FliR [Roseobacter denitrificans OCh
114]
Length = 256
Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 112/235 (47%), Gaps = 5/235 (2%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
F++ CRV + +LP + +V+L A+AF++++ P L + + S +
Sbjct: 19 FVVFCRVAALAAVLPAFGEQTLSARVKLAAALAFTVIVAPALPI---IPAPGSIGAVSFV 75
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
++ E+ G G+ +R++ L LQ GS+ + + L+ +G + + ++ I G
Sbjct: 76 ILTEVVAGLAIGIGLRLFVLALQTAGSIAAQSTSLS--QVLGGAAVDPLPAMGYILVIAG 133
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
L + H +V ++ SY +P+G+ N ++ + + F + L++PF+
Sbjct: 134 LALAVMAGLHVKVAQLIILSYDFMPVGRFANAADLSEWGTSQVAHAFSLAFTLAAPFVIL 193
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+++N ++G +N+ +PQ+ + F+ P + G L +S ++ + +
Sbjct: 194 SVLYNFALGAINRAMPQLMVAFVGAPVITLGGLALLLISAPYMLTVWLGAMDRYL 248
>gi|50121005|ref|YP_050172.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560426|gb|AAS20386.1| HrcT [Pectobacterium atrosepticum]
gi|49611531|emb|CAG74979.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
Length = 266
Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 101/230 (43%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++ L + R+ C +L+P S++ + +R ++ +++ P + + L ++
Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMMRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L+ E+ +G + L++ + + G++ G + + + TPL L
Sbjct: 70 MLPALLFKEIMVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185
+ +L L V + + SY P+ L + F ++N+L TF ++
Sbjct: 130 LKQTLILLLIVGIGLKGLTQLIWDSYQIWPVLSWLPAPSEKGFEVYLNLLADTFTHLVVY 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI LL+ PQ+ ++ +S P +G F + + ++
Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIIYLPVL 239
>gi|325927685|ref|ZP_08188913.1| HrcT protein [Xanthomonas perforans 91-118]
gi|325541886|gb|EGD13400.1| HrcT protein [Xanthomonas perforans 91-118]
Length = 276
Score = 88.8 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 90/238 (37%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV ++LP + +P R S + D + A
Sbjct: 18 LLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPADALAKIQTA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+V E F+G + G + G +I G N TP++++
Sbjct: 76 GLVGVVFKEAFVGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + + + +++L
Sbjct: 136 LLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESLVIQQSDSMMAAVVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + ++ +++IGL+ + ++ +S P L L L L + + QF +
Sbjct: 196 SAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQFGEAL 253
>gi|56414840|ref|YP_151915.1| virulence secretory protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|194443393|ref|YP_002042129.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|197363768|ref|YP_002143405.1| virulence secretory protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198246014|ref|YP_002216857.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205353831|ref|YP_002227632.1| virulence associated secretory protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207858150|ref|YP_002244801.1| secretory protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|56129097|gb|AAV78603.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|194402056|gb|ACF62278.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|197095245|emb|CAR60796.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197940530|gb|ACH77863.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205273612|emb|CAR38599.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|206709953|emb|CAR34307.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|326628940|gb|EGE35283.1| Surface presentation of antigens protein spaR [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 263
Score = 88.8 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ S L RV LP L+ + R + ++ + P ++
Sbjct: 11 HLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPH---ALNEAPPFLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E +G + G L+ + G +I G L +S+ ++ + + + +
Sbjct: 68 VAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + + L KSY E + + L L+
Sbjct: 128 FLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 186 SPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236
>gi|312172197|emb|CBX80454.1| Surface presentation of antigens protein SpaR [Erwinia amylovora
ATCC BAA-2158]
Length = 256
Score = 88.8 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/232 (12%), Positives = 83/232 (35%), Gaps = 7/232 (3%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTID 59
+ + + ++ + R+ +LP L + ++ I L P +
Sbjct: 6 LYFNFQHYLLIFAIAYARLAVVFYMLPILGERIFSHLIIKNAIITLTIIGLWPCFETVVI 65
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ + L++ E +G + ++ + + G ++ G ++ ++ +
Sbjct: 66 PEQ-----SWYLLLVQESIVGLILATVLCLPFWIVIGLGEILDNQRGASMADNIDPLNGG 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L+ L+ + ++ + + A +SY +P G G + +L
Sbjct: 121 QNSILSGLLNFTFGIIFFINNGMCLMLEAFTESYQFLPPGSRW-SGFHWQEAGRVLVIVV 179
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231
+ L++P + ++ I +G+ + PQ+ + +S + +
Sbjct: 180 ESGIMLAAPVIIVMMIAEILLGVFARYCPQLNPFSLSLTIKSFITFIIFFYY 231
>gi|193061932|ref|ZP_03043028.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E22]
gi|194426275|ref|ZP_03058830.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B171]
gi|260845710|ref|YP_003223488.1| T3SS structure protein EscT [Escherichia coli O103:H2 str. 12009]
gi|260858249|ref|YP_003232140.1| T3SS structure protein EscT [Escherichia coli O26:H11 str. 11368]
gi|13447703|gb|AAK26702.1|AF200363_10 EscT [Escherichia coli]
gi|18034507|gb|AAL57529.1|AF453441_13 EscT [Escherichia coli]
gi|17384637|emb|CAC81849.1| EscT protein [Escherichia coli]
gi|57434470|emb|CAI43887.1| EscT protein [Escherichia coli]
gi|192932152|gb|EDV84750.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E22]
gi|194415583|gb|EDX31850.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B171]
gi|195183211|dbj|BAG66756.1| T3SS structure protein EscT [Escherichia coli O111:H-]
gi|254692327|emb|CAR47968.1| EscT protein [Escherichia coli]
gi|254692395|emb|CAR48038.1| EscT protein [Escherichia coli]
gi|257756898|dbj|BAI28400.1| T3SS structure protein EscT [Escherichia coli O26:H11 str. 11368]
gi|257760857|dbj|BAI32354.1| T3SS structure protein EscT [Escherichia coli O103:H2 str. 12009]
gi|323155906|gb|EFZ42073.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli EPECa14]
gi|323163022|gb|EFZ48855.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E128010]
Length = 258
Score = 88.8 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++S F + R ++LP S + +R +AF++ ++ T +
Sbjct: 6 TVIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPII-VENYTFSEKLPSG 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ +V+ E+ +G GL + + G +I T G + + S S + +
Sbjct: 65 IFQLTGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLR 184
++ + + V L SY +P+ ++ F F+ L +F+ +ML
Sbjct: 125 VILYQFITVIFVIHGGIQSVLDKLYLSYEILPLQADIAFNRALVDFLFSLWDSFIKLMLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
S P + + ++ G LNK PQ+ ++ +S P + L L I + +
Sbjct: 185 FSIPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240
>gi|16766194|ref|NP_461809.1| needle complex export protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|161615800|ref|YP_001589765.1| hypothetical protein SPAB_03591 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550263|ref|ZP_02344020.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167993123|ref|ZP_02574218.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230958|ref|ZP_02656016.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168242625|ref|ZP_02667557.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168261989|ref|ZP_02683962.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168463977|ref|ZP_02697894.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820415|ref|ZP_02832415.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194449888|ref|YP_002046848.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194469478|ref|ZP_03075462.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197249484|ref|YP_002147785.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197262517|ref|ZP_03162591.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|200389091|ref|ZP_03215703.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204928069|ref|ZP_03219269.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|224584666|ref|YP_002638464.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|238909655|ref|ZP_04653492.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|730799|sp|P40701|SPAR_SALTY RecName: Full=Surface presentation of antigens protein spaR
gi|404292|emb|CAA51926.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16421436|gb|AAL21768.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|161365164|gb|ABX68932.1| hypothetical protein SPAB_03591 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194408192|gb|ACF68411.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194455842|gb|EDX44681.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|195633460|gb|EDX51874.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197213187|gb|ACH50584.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197240772|gb|EDY23392.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|199606189|gb|EDZ04734.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204322391|gb|EDZ07588.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205324702|gb|EDZ12541.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205328707|gb|EDZ15471.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334620|gb|EDZ21384.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205338237|gb|EDZ25001.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205342880|gb|EDZ29644.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349133|gb|EDZ35764.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224469193|gb|ACN47023.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|261248024|emb|CBG25857.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267995016|gb|ACY89901.1| needle complex export protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159447|emb|CBW18965.1| type III secretion system secretory apparatus [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312913906|dbj|BAJ37880.1| type III secretion system apparatus protein SpaR/YscT/HrcT
[Salmonella enterica subsp. enterica serovar Typhimurium
str. T000240]
gi|320087293|emb|CBY97058.1| Surface presentation of antigens protein spaR [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321223437|gb|EFX48503.1| Surface presentation of antigens protein SpaR [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322614294|gb|EFY11225.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322621642|gb|EFY18495.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624503|gb|EFY21336.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322628834|gb|EFY25617.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322633439|gb|EFY30181.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322635985|gb|EFY32693.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639693|gb|EFY36378.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322646876|gb|EFY43379.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650644|gb|EFY47049.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322658964|gb|EFY55217.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322664469|gb|EFY60663.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322668282|gb|EFY64439.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673738|gb|EFY69839.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322677799|gb|EFY73862.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322681371|gb|EFY77403.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322683773|gb|EFY79783.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323131240|gb|ADX18670.1| needle complex export protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323193838|gb|EFZ79041.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323200308|gb|EFZ85390.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323203189|gb|EFZ88218.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323205564|gb|EFZ90529.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323210075|gb|EFZ94978.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323216378|gb|EGA01105.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221125|gb|EGA05556.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323226947|gb|EGA11129.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230769|gb|EGA14887.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323234880|gb|EGA18966.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323238919|gb|EGA22969.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323241619|gb|EGA25650.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248234|gb|EGA32170.1| type III secretion system protein SpaR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251182|gb|EGA35055.1| type III secretion system protein SpaR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256066|gb|EGA39804.1| type III secretion system protein SpaR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263201|gb|EGA46739.1| type III secretion apparatus protein SpaR/YscT/HrcT [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323264296|gb|EGA47802.1| type III secretion system protein SpaR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271122|gb|EGA54550.1| type III secretion system protein SpaR [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|332989760|gb|AEF08743.1| needle complex export protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 263
Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ S L RV LP L+ + R + ++ + P ++
Sbjct: 11 HLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPH---ALNEAPPFLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E +G + G L+ + G +I G L +S+ ++ + + + +
Sbjct: 68 VAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + + L KSY E + + L L+
Sbjct: 128 FLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 186 SPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236
>gi|227328489|ref|ZP_03832513.1| type III secretion protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 267
Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 100/230 (43%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++ L + R+ C +L+P S++ + R ++ +++ P + + L ++
Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMTRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ E+ +G + L++ + + G++ G + + + TPL L
Sbjct: 70 MLPGLLLKEVIVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185
+ +L L + + + SY P+ L F ++++L TF ++
Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYQIWPVLSWLPAPGEQGFEVYLSLLADTFTHLVVY 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI LL+ PQ+ ++ +S P +G F + + ++
Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIVYLPVL 239
>gi|171321461|ref|ZP_02910407.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MEX-5]
gi|171093259|gb|EDT38461.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia ambifaria
MEX-5]
Length = 288
Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 87/242 (35%), Gaps = 5/242 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ L L R+ + +LP + + + +R A + + + I +
Sbjct: 38 GFIVLLALSSERLLVIMTILPATADNVLKGPLRSGAAAIWCLFVACGQQALIPQ---LRG 94
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A+ E +G V G+ + G+ + G N S + + +
Sbjct: 95 AFLVIACAKEAVIGLVLGIAASTVFWAAEAIGTYVDDVAGFNNVQMQNPSSGTQTSLMAT 154
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-R 184
L+G + + + W++ + AL +SY P+G + F M M+ R
Sbjct: 155 LLGQLTIASFWMLGGMTFLLGALYESYAWWPLGSFNPVPAPLLERFAQARLDMLMNMVAR 214
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 215 IATPMMAMLLLVDLGLAFVARSAQKLDLMTVSQPLKGAIAVLIVAVLAGSFVSEMRGQIS 274
Query: 245 YG 246
Sbjct: 275 LA 276
>gi|325917023|ref|ZP_08179262.1| HrcT protein [Xanthomonas vesicatoria ATCC 35937]
gi|325536774|gb|EGD08531.1| HrcT protein [Xanthomonas vesicatoria ATCC 35937]
Length = 276
Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 4/243 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV +LP + +P R S + D +
Sbjct: 18 LLTLLALCGVRVFVMFFVLPATAQDSLPGMARNGVIYVLSSFIA--YGQPADALARIEAT 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
LV E F+G + G + G +I G N TP++++
Sbjct: 76 GLVGLVFKEAFIGLLIGFAASTVFWVAESVGLLIDDVAGYNNVQMTNPLSGEQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + S + +++L
Sbjct: 136 LMQLAIVSFYALGGMLMLLGALFESFRWWPLSQLTPDMSAVSETFVIQQTDGMMAAIVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S+P L ++ +++IG + + ++ +S P L L L L + + Q + +
Sbjct: 196 SAPLLLVLVLVDLAIGFVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQSGDALGF 255
Query: 246 GFF 248
F
Sbjct: 256 FHF 258
>gi|194426389|ref|ZP_03058944.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B171]
gi|14422433|dbj|BAB60840.1| epaR [Escherichia coli]
gi|194415697|gb|EDX31964.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B171]
Length = 261
Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 73/236 (30%), Gaps = 11/236 (4%)
Query: 8 IMMSLFLIVCRVGS------CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQ 61
++ + L CR+ LLP + IP VR + S L+ +
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYEL--- 68
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+N + E+ +G L+ GS I G L +++ + +
Sbjct: 69 LNLNEIDIALFAAREIIIGLFIACLLASPFWMFLAIGSFIDNQRGATLSSTLDPATGVDT 128
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ L L + + + L +SY G + +
Sbjct: 129 SELARLFNLFSAAVYLTKGGMNFILETLWQSYNLWLSGNFNFPK--LEPLFSYINNIMTH 186
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
+ +SP + + +GLL Q+ + IS L L L + I+
Sbjct: 187 TIVYASPVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPILA 242
>gi|294625828|ref|ZP_06704444.1| HrcT protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|294665980|ref|ZP_06731243.1| HrcT protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|159024045|gb|ABW87273.1| HrcT [Xanthomonas fuscans subsp. fuscans]
gi|292599856|gb|EFF43977.1| HrcT protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292604228|gb|EFF47616.1| HrcT protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 276
Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 87/238 (36%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV +LP + +P R S + D +
Sbjct: 18 LLTLLALCGVRVFVMFTVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPADALAKIQTV 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+V E F+G + G + G +I G N TP++++
Sbjct: 76 GLVGVVFKEAFIGLMIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + + +++L
Sbjct: 136 LLQLAIVSFYALGGMLMLLGALFESFRWWPLSQLGPNVGAVAESFVIQQSDGMMAAVVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + ++ +++IGL+ + ++ +S P L L L L + + QF +
Sbjct: 196 SAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQFGEAL 253
>gi|166714018|ref|ZP_02245225.1| HrpB8 [Xanthomonas oryzae pv. oryzicola BLS256]
gi|61219457|gb|AAX40634.1| HrpB8 [Xanthomonas oryzae pv. oryzicola]
Length = 276
Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 89/238 (37%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV ++LP + +P R S + D +
Sbjct: 18 LLTLLALCGVRVLVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPADALVKIQTV 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+V E F+G + G + G +I G N TP++++
Sbjct: 76 GLVGVVFKEAFIGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + + + +++L
Sbjct: 136 LLQLAIVSFYALGGMLMLLGALFESFHWWPLTQLGPNMGAVAESFVIRQYDSMIAAVVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + ++ +++IGL+ + ++ +S P L L L L + + QF +
Sbjct: 196 SAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQFGEAL 253
>gi|218892353|ref|YP_002441220.1| translocation protein in type III secretion [Pseudomonas aeruginosa
LESB58]
gi|254240036|ref|ZP_04933358.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
gi|126193414|gb|EAZ57477.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
gi|218772579|emb|CAW28362.1| translocation protein in type III secretion [Pseudomonas aeruginosa
LESB58]
Length = 262
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 5/232 (2%)
Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ SC ++LP L+ + VR A + ++ P + ++ ++ + L+ E
Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPA--LDALDIALLIGKE 76
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ LG + G + + ++ TG +I G L ++ S +P L+ +
Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLF 136
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + +L +SY + P+ + F M+ ++P L
Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + L+++ P + ++ ++ P + SL L L + I++ + L
Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDALLLA 248
>gi|58039958|ref|YP_191922.1| flagellar biosynthetic protein FliR [Gluconobacter oxydans 621H]
gi|58002372|gb|AAW61266.1| Flagellar biosynthetic protein FliR [Gluconobacter oxydans 621H]
Length = 284
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 112/248 (45%), Gaps = 12/248 (4%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ ++ L++ R G+ +M++PGL +PM +R A+ +++LLP + + +
Sbjct: 25 SVWALAFVLVLSRTGAVVMVMPGLGEQSMPMMIRAGCAITLTVLLLPLVAPLLMQDHLDA 84
Query: 66 RAYYSK--LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
A ++ VELF G + G + R+ + L G +I+ +G++ +
Sbjct: 85 LAPLGLCGMIAVELFAGILIGWMARLICMALPIAGQIIAVCMGISSVLQPDPDLGSGSSA 144
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ----------ELNFGNIFSSFVN 173
+ ++ L L V + A++ SY IP G G+ +
Sbjct: 145 PARFLNLLAPLVLLVTGAYILPVRAILGSYSIIPPGGALLAAASHAHWNLLGDSAQGIIQ 204
Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233
+ + +F + L LS+PFL +V+ +G++ +L+P + IY ++P + G L L++
Sbjct: 205 LTERSFALGLELSAPFLILSLVWQGMLGIMTRLLPTLQIYNAASPLQLLGGIALLGLTLS 264
Query: 234 IIVYQFSH 241
+V +
Sbjct: 265 TMVTIWQG 272
>gi|215488992|ref|YP_002331423.1| T3SS structure protein EscT [Escherichia coli O127:H6 str.
E2348/69]
gi|312967935|ref|ZP_07782147.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli 2362-75]
gi|2865278|gb|AAC38371.1| EscT [Escherichia coli]
gi|215267064|emb|CAS11509.1| T3SS structure protein EscT [Escherichia coli O127:H6 str.
E2348/69]
gi|312287496|gb|EFR15404.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli 2362-75]
gi|323189403|gb|EFZ74684.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli RN587/1]
Length = 258
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 94/236 (39%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++S F + R ++LP S + +R +AF++ ++ T +
Sbjct: 6 TVIVSSFYCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPII-VENYTFSEKLPSG 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ +V+ E+ +G GL + + G +I T G + + S S + +
Sbjct: 65 IFQLTGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLR 184
++ + + + L SY +P+ ++ F F+ L +F+ +ML
Sbjct: 125 VILYQFISVIFVIHGGIQSILDKLYLSYEILPLQADIAFNRALIDFLFSLWDSFIKLMLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
S P + + ++ G LNK PQ+ ++ +S P + L L I + +
Sbjct: 185 FSVPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240
>gi|254234790|ref|ZP_04928113.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
gi|126166721|gb|EAZ52232.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
Length = 262
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 5/232 (2%)
Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ SC ++LP L+ + VR A + ++ P + ++ ++ + L+ E
Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPA--LDALDIALLIGKE 76
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ LG + G + + ++ TG +I G L ++ S +P L+ +
Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLF 136
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + +L +SY + P+ + F M+ ++P L
Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + L+++ P + ++ ++ P + SL L L + I++ + L
Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDTLLLA 248
>gi|227114166|ref|ZP_03827822.1| type III secretion protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 267
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 100/230 (43%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++ L + R+ C +L+P S++ + R ++ +++ P + + L ++
Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMTRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ E+ +G + L++ + + G++ G + + + TPL L
Sbjct: 70 MLPGLLLKEVIVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185
+ +L L + + + SY P+ L F ++++L TF ++
Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYHIWPVLSWLPAPGEQGFEVYLSLLADTFTHLVVY 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI LL+ PQ+ ++ +S P +G F + + ++
Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIIYLPVL 239
>gi|34500879|gb|AAQ73907.1| HrcT [Pectobacterium carotovorum subsp. carotovorum]
Length = 267
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 100/230 (43%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++ L + R+ C +L+P S++ + R ++ +++ P + + L ++
Sbjct: 11 FIIAITLGIARLYPCFILVPVFSLNVLKGMTRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ E+ +G + L++ + + G++ G + + + TPL L
Sbjct: 70 MLPGLLLKEILVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185
+ +L L + + + SY P+ L F ++++L TF ++
Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYQIWPVLSWLPAPGEQGFEVYLSLLADTFTHLVVY 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI LL+ PQ+ ++ ++ P +G F + + I+
Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLAIPAKCLVGMAFFIVYLPIL 239
>gi|310823552|ref|YP_003955910.1| type III secretion inner membrane protein [Stigmatella aurantiaca
DW4/3-1]
gi|309396624|gb|ADO74083.1| Type III secretion inner membrane protein [Stigmatella aurantiaca
DW4/3-1]
Length = 264
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 74/211 (35%), Gaps = 2/211 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ L R+ L P L P V+L ++ ++ L + + +
Sbjct: 18 AAVALCAARLVPMAFLCPLLGGQATPSPVKLSLVLSLALFLHLGAGVKVPVP-METLGEW 76
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L + EL G GLL + + G I G + + S+ E+ ++
Sbjct: 77 GALALKELVYGTAVGLLAALPFDAARMGGRFIDLFRGASAEASL-PVAGSRESAAGDVLY 135
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ + + +V ++ +G +P+G + + + L + +P
Sbjct: 136 QLLVALVVTGGLFPRVLSGSLRGFGVVPLGTAVPSEAATGQVFLLAGSALATGLAIGAPI 195
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYL 220
+ + +G+ ++ PQ+ + + P
Sbjct: 196 AAASMAVDCWVGMASRAAPQMNLQELGAPLR 226
>gi|188532664|ref|YP_001906461.1| HrcT protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
gi|188027706|emb|CAO95559.1| HrcT protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
Length = 265
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 3/243 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L R+ C++L+P S + + VR A+A +++ L + +Q +
Sbjct: 11 QFIFALTLGAARIYPCLILMPVFSFNILKGMVRTGVALALALMPAIGLQAQLAVQMP-DW 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E+ +G + GLL+ + Q G++ G + + + TPL
Sbjct: 70 PQLIGLVLKEVTIGILLGLLLGMPFWLFQSVGALFDNQRGALIGGQLNPALGSDFTPLGL 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L+ +L L + V + SY P+ Q L F ++ +L TF ++
Sbjct: 130 LLQQTLILLLMLGIGLRGVTQIIWDSYRIWPVLQWLPLPHEEGFQQYLALLADTFTHIII 189
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ P + ++ + SI +L+ PQ+ ++ +S P +G LF + I + L
Sbjct: 190 YAGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFVIYIPTLNALGEDRLL 249
Query: 245 YGF 247
+
Sbjct: 250 QLY 252
>gi|16520046|ref|NP_444166.1| innermembrane protein RhcT; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
gi|2494573|sp|P55722|Y4YN_RHISN RecName: Full=Probable translocation protein y4yN
gi|2182739|gb|AAB91953.1| innermembrane protein RhcT; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
Length = 272
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 4/229 (1%)
Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-VNRAYYSKLVMVELFLG 80
+++LP + S I +R C A+AF + L + D + + + L + E+F+G
Sbjct: 32 IMLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQAPDPETSLIQIPLLGLKEVFVG 91
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
+ G + + GLQ G I G+ + T + + + + +GI +
Sbjct: 92 VLLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATNSQASAMGVFLGITAITIFVAA 151
Query: 140 DFHHQVFYALVKSYGTIPI--GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
V AL SY P+ Q +L L +S P +FF + +
Sbjct: 152 GGVEAVLSALYGSYSIWPVYRFQPTLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGLID 211
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
IS+ +L + PQ +S P + + + ++
Sbjct: 212 ISMMMLRRFAPQFKSGQLSPPIKNIVFPIIMVTYATYLLEGIKLEITQA 260
>gi|58579716|ref|YP_198732.1| HrpB8 [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84621740|ref|YP_449112.1| HrcT protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188574358|ref|YP_001911287.1| type III secretion apparatus protein SpaR/YscT/HrcT [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|7350911|gb|AAF61279.1| HrpB8 [Xanthomonas oryzae pv. oryzae]
gi|9711581|dbj|BAB07850.1| HrpB8 [Xanthomonas oryzae pv. oryzae]
gi|24251285|gb|AAN46404.1| HrpB8 [Xanthomonas oryzae pv. oryzae]
gi|50428344|dbj|BAD29981.1| HrcT [Xanthomonas oryzae pv. oryzae]
gi|58424310|gb|AAW73347.1| HrpB8 [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84365680|dbj|BAE66838.1| HrcT protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188518810|gb|ACD56755.1| type III secretion apparatus protein SpaR/YscT/HrcT [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 276
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 90/238 (37%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV ++LP + +P R S + D +
Sbjct: 18 LLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIA--YGQPADALAKIQTV 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+V E F+G + G + G +I G N TP++++
Sbjct: 76 GLVGVVFKEAFIGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + + + +++L
Sbjct: 136 LLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESFVIQQYDSMMAAVVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + ++ +++IGL+ + ++ +S P L L L L I + + QF +
Sbjct: 196 SAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLISVFIAQFGEAL 253
>gi|322382376|ref|ZP_08056283.1| flagellar biosynthesis protein FliR [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153729|gb|EFX46104.1| flagellar biosynthesis protein FliR [Paenibacillus larvae subsp.
larvae B-3650]
Length = 212
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 4/191 (2%)
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Y + E+ +G G + ++ +Q GS I +G + + +
Sbjct: 9 NPVTMDGTYLLAIFREILVGITLGFVAYLFFTAVQIAGSFIDIQMGFGIANVIDPMTGAS 68
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI----GQELNFGNIFSSFVNMLQ 176
L + +I L + HH + A++ SY +P+ + G + V
Sbjct: 69 APILGNFKYMIATLLFLSFNGHHLLLQAIMNSYDWVPMTNEVFARVFEGQVSEWIVRSFT 128
Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
T F + +L++P + ++ +GLL ++ PQ I+ + P+ + LG + L + + +
Sbjct: 129 TMFGLAFQLAAPIAAALFLTDLGLGLLTRVAPQFNIFVVGAPFKMLLGFVLLLMLLPELG 188
Query: 237 YQFSHSFLYGF 247
F F F
Sbjct: 189 SMFEKVFTTMF 199
>gi|296125238|ref|YP_003632490.1| flagellar biosynthetic protein FliR [Brachyspira murdochii DSM
12563]
gi|296017054|gb|ADG70291.1| flagellar biosynthetic protein FliR [Brachyspira murdochii DSM
12563]
Length = 267
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 8/244 (3%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
LI+ R + +M+ P S + IP +++ A + + P + D I +Q
Sbjct: 7 FFQIYLLIMVRFIAILMVAPLFSSNVIPNSIKMALAFIATATIFPLVAD-ISVQAAPTFM 65
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y ++ E +G + G L+ + Q + +G + ++ + L L
Sbjct: 66 EYFLTLLNEALIGILIGFLMSIIFAAYQVMANFFEVQMGFGISETVDPISQVTVPVLGQL 125
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ-------ELNFGNIFSSFVNMLQTTFM 180
++ +L ID V L S+ +P+ +F + + + + F
Sbjct: 126 QSLVVVLIFIAIDGPSWVVRTLFYSFKAMPVLSDASKAVFASSFNGVIDRMIYYMSSLFS 185
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
I L L+ P + + ++S+GLL K PQ+ I + P IG+G + + I ++V F
Sbjct: 186 IALSLALPIMLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIGVGIVSYYILIPVLVSNFM 245
Query: 241 HSFL 244
Sbjct: 246 RILE 249
>gi|218988948|gb|ACL13611.1| surface presentation of antigens protein SpaR [Salmonella enterica
subsp. salamae serovar Sofia]
Length = 263
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 82/231 (35%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ S + RV LP L+ + R + ++ + P +
Sbjct: 11 HLVASAAMGFARVAPIFFFLPFLNSGVLSGAPRNAIIVLVALGVWPH---ELSEAPPFLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E +G + G L+ + G +I G L +S+ ++ + + + +
Sbjct: 68 VAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + + L KSY E + + L L+
Sbjct: 128 FLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 186 SPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236
>gi|171319607|ref|ZP_02908703.1| type III secretion system inner membrane R protein [Burkholderia
ambifaria MEX-5]
gi|171095178|gb|EDT40180.1| type III secretion system inner membrane R protein [Burkholderia
ambifaria MEX-5]
Length = 252
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 5/241 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ L+ RVG +M P + +P+++R+C + L L + Q
Sbjct: 8 GWAMASLLLSLRVGPLVMFAPPFAQLRVPLRIRVCLV----LALAGALATPLPAQLRNAP 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + EL LG ++ L F G + G L T + +
Sbjct: 64 AMLVASAISELALGFTLAFPLQAAFAALSFAGRALDVQAGFGLATVIDPGSRSQAPLFGT 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L+ + + H ++ + S +P G + +F+ I +
Sbjct: 124 LLTLGAGAICFASGAHLELLRLVAASIERMPPGTARIVSSP-QAFIGYFGRVMGIGIGAV 182
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + + ++SI L++ +PQ+ + + LSI ++
Sbjct: 183 AAVMLALFLIDLSIAFLSRTLPQLNALMLGLQVKAIAAIVVTALSIGLLGPVTLRLLRAS 242
Query: 247 F 247
Sbjct: 243 L 243
>gi|51103001|gb|AAT96148.1| HrcS [Pseudomonas viridiflava]
gi|51103056|gb|AAT96202.1| HrcT [Pseudomonas viridiflava]
Length = 264
Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/234 (18%), Positives = 89/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+MM + L + R+ C+ML+P Y+ +R A S+V P + + + N
Sbjct: 10 ELMMGMVLAMARLLPCMMLVPAFCFKYLKGPLRYAILAAISMVPAPAISRALGSMD-GNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + S TPL
Sbjct: 69 FEIGGLIIKESVLGTLMGLLLYAPFWMFASVGALLDSQRGALSGGQINPSLGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L F+ L T M+
Sbjct: 129 LFQETMIMLVILTGGLSLITQVIWDSYTVWPPTAWLPGMTAEGLDVFLEQLNQTMQHMML 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIVGLYAQQLNVSILAMPAKSMAGLAFLLVYLPTLLEL 242
>gi|315617515|gb|EFU98121.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli 3431]
Length = 258
Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++S F + R ++LP S + +R +AF++ ++ T +
Sbjct: 6 TVIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMVAFTLPII-IENYTFSEKLPSG 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ +V+ E+ +G GL + + G +I T G + + S S + +
Sbjct: 65 IFPLTGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLR 184
++ + + V L SY +P+ ++ F F+ L +F+ +ML
Sbjct: 125 VILYQFITVIFVIQGGIQSVLEKLYLSYEILPLQADIIFNRALVDFLFSLWDSFIRLMLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
S P + + ++ G LNK PQ+ ++ +S P + L L I + +
Sbjct: 185 FSIPMVVGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFMLLLVIHVFPEFIT 240
>gi|292488069|ref|YP_003530946.1| surface presentation of antigens protein SpaR [Erwinia amylovora
CFBP1430]
gi|292899280|ref|YP_003538649.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291199128|emb|CBJ46242.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291553493|emb|CBA20538.1| Surface presentation of antigens protein SpaR [Erwinia amylovora
CFBP1430]
Length = 256
Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/232 (12%), Positives = 83/232 (35%), Gaps = 7/232 (3%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTID 59
+ + + ++ + R+ +LP L + ++ I L P +
Sbjct: 6 LYFNFQHYLLIFAIAYARLAVVFYMLPILGERIFSHLIIKNAIITLTIIGLWPCFETVVI 65
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ + L++ E +G + ++ + + G ++ G ++ ++ +
Sbjct: 66 PEQ-----SWYLLLVQESIVGLILATVLCLPFWIVIGLGEILDNQRGASMADNIDPLNGG 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L+ L+ + ++ + + A +SY +P G G + +L
Sbjct: 121 QNSILSGLLNFTFGIIFFINNGMCLMLEAFTESYQFLPPGSRW-SGFHWQEAGRVLVIVV 179
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231
+ L++P + ++ I +G+ + PQ+ + +S + +
Sbjct: 180 ESSIMLAAPVIIVMMIAEILLGVFARYCPQLNPFSLSLTIKSFITFIIFFYY 231
>gi|160875392|ref|YP_001554708.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
OS195]
gi|160860914|gb|ABX49448.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
OS195]
gi|315267592|gb|ADT94445.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
OS678]
Length = 266
Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/213 (17%), Positives = 82/213 (38%), Gaps = 1/213 (0%)
Query: 30 SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRV 89
+ +R + F++ + + + + + L E+ +G + G +
Sbjct: 35 GGAMGSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEIIVGMLLGFCAAI 94
Query: 90 YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYAL 149
+ G VI T G ++ T + L + L + + V + + AL
Sbjct: 95 PFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTAL 154
Query: 150 VKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVP 208
+SY +P G L + + Q + L + P + I+ ++++GL+N+
Sbjct: 155 YQSYQQLPPGFNLTLSQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQ 214
Query: 209 QIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
Q+ ++F+S P L L L S++ + +
Sbjct: 215 QLNVFFLSMPIKSALVLLLLIYSLQFALSHYLQ 247
>gi|51103204|gb|AAT96345.1| HrcT [Pseudomonas viridiflava]
Length = 265
Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 98/232 (42%), Gaps = 3/232 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++L + + R+ C+ L+P + + + +R +A +++ +P + + +
Sbjct: 10 SETIIALTIGMARLYPCLFLIPAFAFTELKGMLRHAIVLALALIPMPAIRIGLAGHEL-D 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L++ E +G + GLL+ + + G + G + + + + L
Sbjct: 69 WLDLCALLLKESVIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELG 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIML 183
++ + +L + + + + + SY P Q + F ++ ++ +TF M+
Sbjct: 129 HMLKQVLILLMILGGGYASLTQIMWDSYLVWPATQWVPVTGAAGFEVYLKLVASTFRFMV 188
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
++P + ++ + +L+ PQ+ + ++ P G FL L + ++
Sbjct: 189 LYAAPLVGLLLMIEFGMAILSLYSPQLQVSTLAMPAKSLAGLFFLVLYMPML 240
>gi|15723909|gb|AAL06356.1|AF311901_8 EscT [Citrobacter rodentium]
Length = 258
Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 91/236 (38%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++S F + R ++LP S + +R +AF++ ++
Sbjct: 6 TVIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMVAFTLPII-VENYKFSEGLPSG 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+V+ E+ +G GL + + G +I T G + + S S + +
Sbjct: 65 IFQLIAIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLR 184
++ + + V L SY +P+ + F + F+ L +F+ +ML
Sbjct: 125 VILYQFVTVIFVIHGGIQSVLDKLYLSYEMLPLQSGITFNHTLVDFLFSLWDSFIKLMLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
S P + + ++ G LNK PQ+ ++ +S P + L L I I +
Sbjct: 185 FSVPMVVGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAVFILLLVIHIFPEFIT 240
>gi|15804242|ref|NP_290281.1| hypothetical protein Z5133 [Escherichia coli O157:H7 EDL933]
gi|15833835|ref|NP_312608.1| EscT [Escherichia coli O157:H7 str. Sakai]
gi|168748642|ref|ZP_02773664.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4113]
gi|168753531|ref|ZP_02778538.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4401]
gi|168759828|ref|ZP_02784835.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4501]
gi|168766128|ref|ZP_02791135.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4486]
gi|168772323|ref|ZP_02797330.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4196]
gi|168779863|ref|ZP_02804870.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4076]
gi|168785596|ref|ZP_02810603.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC869]
gi|168798677|ref|ZP_02823684.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC508]
gi|193069191|ref|ZP_03050148.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E110019]
gi|195936264|ref|ZP_03081646.1| EscT [Escherichia coli O157:H7 str. EC4024]
gi|208806963|ref|ZP_03249300.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4206]
gi|208812977|ref|ZP_03254306.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4045]
gi|208818204|ref|ZP_03258524.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4042]
gi|209399341|ref|YP_002273177.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4115]
gi|217325738|ref|ZP_03441822.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. TW14588]
gi|254795656|ref|YP_003080493.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. TW14359]
gi|260869699|ref|YP_003236101.1| putative T3SS structure protein EscT [Escherichia coli O111:H- str.
11128]
gi|261225800|ref|ZP_05940081.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258845|ref|ZP_05951378.1| putative T3SS structure protein EscT [Escherichia coli O157:H7 str.
FRIK966]
gi|291285069|ref|YP_003501887.1| escT [Escherichia coli O55:H7 str. CB9615]
gi|12518475|gb|AAG58845.1|AE005597_3 escT [Escherichia coli O157:H7 str. EDL933]
gi|3414915|gb|AAC31526.1| L0047 [Escherichia coli]
gi|13364056|dbj|BAB38004.1| type III secretion system EscT protein [Escherichia coli O157:H7
str. Sakai]
gi|54311602|emb|CAG17517.1| EscT protein [Escherichia coli]
gi|187771699|gb|EDU35543.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4196]
gi|188016878|gb|EDU55000.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4113]
gi|189002261|gb|EDU71247.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4076]
gi|189359318|gb|EDU77737.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4401]
gi|189364656|gb|EDU83075.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4486]
gi|189369749|gb|EDU88165.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4501]
gi|189374415|gb|EDU92831.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC869]
gi|189378810|gb|EDU97226.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC508]
gi|192957515|gb|EDV87961.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E110019]
gi|195957532|gb|ACG59643.1| type III secretion system protein EscT [Escherichia coli O157:H7]
gi|195957591|gb|ACG59701.1| type III secretion system protein EscT [Escherichia coli]
gi|195957648|gb|ACG59757.1| EscT [Escherichia coli]
gi|208726764|gb|EDZ76365.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4206]
gi|208734254|gb|EDZ82941.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4045]
gi|208738327|gb|EDZ86009.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4042]
gi|209160741|gb|ACI38174.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC4115]
gi|217321959|gb|EEC30383.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. TW14588]
gi|221361438|emb|CAX18591.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361495|emb|CAX18666.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361556|emb|CAX18746.1| Type III secretion system, LEE associated [Escherichia coli]
gi|254595056|gb|ACT74417.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. TW14359]
gi|255348329|gb|ACU09471.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli]
gi|257766055|dbj|BAI37550.1| putative T3SS structure protein EscT [Escherichia coli O111:H- str.
11128]
gi|290764942|gb|ADD58903.1| escT [Escherichia coli O55:H7 str. CB9615]
gi|320639371|gb|EFX08986.1| escT hypothetical protein [Escherichia coli O157:H7 str. G5101]
gi|320644815|gb|EFX13851.1| escT [Escherichia coli O157:H- str. 493-89]
gi|320650079|gb|EFX18575.1| escT [Escherichia coli O157:H- str. H 2687]
gi|320655426|gb|EFX23361.1| escT [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320661052|gb|EFX28488.1| escT [Escherichia coli O55:H7 str. USDA 5905]
gi|320666178|gb|EFX33184.1| escT [Escherichia coli O157:H7 str. LSU-61]
gi|323178897|gb|EFZ64473.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli 1180]
Length = 258
Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/236 (18%), Positives = 93/236 (39%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++S F + R ++LP S + +R +AF++ ++ T +
Sbjct: 6 TVIVSSFYCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPII-VENYTFSEKLPSG 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ + + E+ +G GL + + G +I T G + + S S + +
Sbjct: 65 IFQLTGIALKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLR 184
++ + + + L SY +P+ ++ F F+ L +F+ +ML
Sbjct: 125 VILYQFISVIFVIHGGIQSILDKLYLSYEILPLQADIAFNRALIDFLFSLWDSFIKLMLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
S P + + ++ G LNK PQ+ ++ +S P + L L I + +
Sbjct: 185 FSVPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240
>gi|168704084|ref|ZP_02736361.1| flagellar biosynthesis protein FliR [Gemmata obscuriglobus UQM
2246]
Length = 254
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 98/236 (41%), Gaps = 8/236 (3%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF-----V 64
++L L++ R+G+ + ++P + P VR + + + + V
Sbjct: 6 VALGLLLARIGAFVAVMPLFAART-PRTVRAGMVVVLAAFYVGPAGAELAAAPPGSVREV 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ Y ++ E +G G ++ L + G ++ IGLN+ +G + + PL
Sbjct: 65 DPLRYGLVLAREALIGVAMGFAFGLFLLPGRIAGEFVTQQIGLNISPQLGPAGGESGGPL 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
++ G L ++D HH V A S+ +PIG + V L + + + L
Sbjct: 125 TNVFETAGALVFLLVDGHHIVLMAFHASFAALPIGGSVVPEAG--PMVTGLASAYEMGLL 182
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L++P + +I++ ++ + PQ+ IY + + + + + + V +
Sbjct: 183 LAAPLALCLFLLSITLAVMARAAPQLNIYSVGFSLQVLVALIAGLVLVPEFVTTLT 238
>gi|197122900|ref|YP_002134851.1| type III secretion system inner membrane R protein
[Anaeromyxobacter sp. K]
gi|196172749|gb|ACG73722.1| type III secretion system inner membrane R protein
[Anaeromyxobacter sp. K]
Length = 250
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 1/226 (0%)
Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
P L++ R + P L +P +VRL A+A + + +
Sbjct: 3 LPLAAAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLGLALALTWAVHAGAGS-PAVPPP 61
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
A + + E G + GL R G + + GL + +
Sbjct: 62 PGLASLAGAALAETATGLLAGLAARWTLDAALAAGHLAGLSAGLGYSALVDPITGAESSA 121
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
++ + ++ + H + LV++ P G + + S + + +
Sbjct: 122 VSQTVFVVAQAVAVALGVHREAVAWLVRAALVWPPGAAPDLAELASRAAGQAALSVALAV 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229
RL+ P + ++ ++ + + ++ PQ+ + + L L
Sbjct: 182 RLAFPVMAAALLGHLLLAAMGRMAPQLSLSNVGFSASTLAAGLALY 227
>gi|330953284|gb|EGH53544.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 271
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 94/234 (40%), Gaps = 2/234 (0%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
L R +++ P + + +R C A+A S+ ++ ++ + + + L+
Sbjct: 22 LAASRAMGVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLM 81
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ EL +G + GLL + + G +I G ++ + + + +L+ ++ +
Sbjct: 82 IKELLIGLLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLI 141
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
++ + SY P+ + L +S + +L I + + +P L
Sbjct: 142 TLFFMSGGFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLI 201
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ ++ + L+++ P + I+ +S P S+ + + I ++
Sbjct: 202 AMLITDLMLAYLSRMAPSLHIFDLSLPVKNLFFSVLMVVYIGFLIPVMIDQLAQ 255
>gi|49082920|gb|AAT50860.1| PA1691 [synthetic construct]
Length = 263
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 91/232 (39%), Gaps = 5/232 (2%)
Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ SC ++LP L+ + VR A + ++ P + ++ + + L+ E
Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPA--LGALDIALLIGKE 76
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ LG + G + + ++ TG +I G L ++ S +P L+ +
Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLF 136
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + +L +SY + P+ + F M+ ++P L
Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + L+++ P + ++ ++ P + SL L L + I++ + L
Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDALLLA 248
>gi|62181390|ref|YP_217807.1| surface presentation of antigens; secretory proteins [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|62129023|gb|AAX66726.1| surface presentation of antigens; secretory proteins [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
Length = 263
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 5/231 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ S L RV LP L+ + R + ++ + P + +
Sbjct: 11 HLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEVP---PFLS 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E +G + G L+ + G +I G L +S+ ++ + + + +
Sbjct: 68 VAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + + L KSY E + + L L+
Sbjct: 128 FLNMSAAVVHLQNGGLVTMVDVLTKSYQLCDPMNECTPS--LPPLLTFINQVAQNALVLA 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
SP + ++ + +GLL++ PQ+ + IS G+ L + L ++
Sbjct: 186 SPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLP 236
>gi|283786650|ref|YP_003366515.1| T3SS structural protein EscT [Citrobacter rodentium ICC168]
gi|282950104|emb|CBG89739.1| T3SS structural protein EscT [Citrobacter rodentium ICC168]
Length = 258
Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 91/236 (38%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++S F + R ++LP S + +R +AF++ ++
Sbjct: 6 TVIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMVAFTLPII-VENYKFSEGLPSG 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+V+ E+ +G GL + + G +I T G + + S S + +
Sbjct: 65 IFQLIAIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLR 184
++ + + V L SY +P+ + F + F+ L +F+ +ML
Sbjct: 125 VILYQFVTVIFVIHGGIQSVLDKLYLSYEMLPLQSGITFNHTLVDFLFSLWDSFIKLMLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
S P + + ++ G LNK PQ+ ++ +S P + L L I I +
Sbjct: 185 FSVPMVIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAVFILLLVIHIFPEFIT 240
>gi|289663770|ref|ZP_06485351.1| HrcT protein [Xanthomonas campestris pv. vasculorum NCPPB702]
gi|289668193|ref|ZP_06489268.1| HrcT protein [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 276
Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 4/229 (1%)
Query: 17 CRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
RV +LP + +P R S + D + A +V E
Sbjct: 27 VRVFVMFTVLPATAQDSLPGMARNGVIYVLSSFIA--YGQPADALEKIQAAGLVGVVFKE 84
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
F+G + G + G +I G N TP+++++ + +++
Sbjct: 85 AFIGMLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQQSTPVSTVLLQLAIVSF 144
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + AL +S+ P+ Q S + +++LS+P + +
Sbjct: 145 YALGGMLMLLGALFESFRWWPLSQLQPDMGAVSESFVIQQTDGMMAAVVKLSAPVMLVLV 204
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ +++IG + + ++ +S P L L L L + + QFS S
Sbjct: 205 LVDLAIGFVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIAQFSESL 253
>gi|51103121|gb|AAT96264.1| HrcT [Pseudomonas viridiflava]
gi|51103163|gb|AAT96305.1| HrcT [Pseudomonas viridiflava]
Length = 265
Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 98/232 (42%), Gaps = 3/232 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++L + + R+ C+ L+P + + + +R +A +++ +P + + +
Sbjct: 10 SETIIALTIGMARLYPCLFLIPAFAFTELKGMLRHAIVLALALIPMPAIRMGLTGHEL-D 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L++ E +G + GLL+ + + G + G + + + + L
Sbjct: 69 WLDLCALLLKESVIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELG 128
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIML 183
++ + +L + + + + + SY P Q + F ++ ++ +TF M+
Sbjct: 129 HMLKQVLILLMILGGGYASLTQIMWDSYLVWPATQWVPVTGAAGFEVYLKLVASTFRFMV 188
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
++P + ++ + +L+ PQ+ + ++ P G FL L + ++
Sbjct: 189 LYAAPLVGLLLMIEFGMAILSLYSPQLQVSTLAMPAKSLAGLFFLVLYMPML 240
>gi|170766697|ref|ZP_02901150.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
albertii TW07627]
gi|170124135|gb|EDS93066.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
albertii TW07627]
Length = 258
Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 3/236 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMS-YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++S F + R ++LP S + +R +AF++ ++ T +
Sbjct: 6 TVIVSSFFCILRPLGMFIILPIFSTGVLLSNFIRNSIMVAFTLPII-IENYTFSEKLPSG 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ +V+ E+ +G GL + + G +I T G + + S S + +
Sbjct: 65 IFPLTGIVLKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM-IMLR 184
++ + + V L SY +P+ ++ F F+ L +F+ +ML
Sbjct: 125 VILYQFITVIFVIQGGIQSVLEKLYLSYEILPLQADIMFNRALVDFLFSLWDSFIRLMLS 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
S P + + ++ G LNK PQ+ ++ +S P + L L I + +
Sbjct: 185 FSIPMVIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFMLLLVIHVFPEFIT 240
>gi|15596888|ref|NP_250382.1| translocation protein in type III secretion [Pseudomonas aeruginosa
PAO1]
gi|9947664|gb|AAG05080.1|AE004596_6 translocation protein in type III secretion [Pseudomonas aeruginosa
PAO1]
Length = 262
Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 91/232 (39%), Gaps = 5/232 (2%)
Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ SC ++LP L+ + VR A + ++ P + ++ + + L+ E
Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPA--LGALDIALLIGKE 76
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ LG + G + + ++ TG +I G L ++ S +P L+ +
Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLLTQTLITLF 136
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + +L +SY + P+ + F M+ ++P L
Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + L+++ P + ++ ++ P + SL L L + I++ + L
Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDALLLA 248
>gi|251789491|ref|YP_003004212.1| type III secretion protein SpaR/YscT/HrcT [Dickeya zeae Ech1591]
gi|247538112|gb|ACT06733.1| type III secretion protein SpaR/YscT/HrcT [Dickeya zeae Ech1591]
Length = 267
Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +L L V R+ C+ L+P S S I +R A+A ++V + + L +
Sbjct: 13 FIYALTLGVARLYPCLFLVPLFSFSIIKGMLRNAVAIAIALVPAGAIQQQM-LTTTITWP 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ EL +G + G+++ + + G++ G + + TPL +
Sbjct: 72 MLPALLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDATPLGHM 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + L + L SY P L F +++++L+ TF M+
Sbjct: 132 LKELFTMLLVLTIGFSGFTQLLWDSYRLWPALDFLPPLSEQGFHTYLDLLKETFQHMIVY 191
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI +L+ PQ+ +Y +STP G F L + ++
Sbjct: 192 AGPLVALLLLLEFSIAILSLYSPQLQVYVLSTPAKCLAGMAFFVLYMPVL 241
>gi|21230695|ref|NP_636612.1| HrpB8 protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769310|ref|YP_244072.1| HrpB8 protein [Xanthomonas campestris pv. campestris str. 8004]
gi|188992462|ref|YP_001904472.1| HrcT protein [Xanthomonas campestris pv. campestris str. B100]
gi|21112284|gb|AAM40536.1| HrpB8 protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574642|gb|AAY50052.1| HrpB8 protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167734222|emb|CAP52430.1| HrcT protein [Xanthomonas campestris pv. campestris]
Length = 276
Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 88/238 (36%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV +LP + +P R S + D + A
Sbjct: 18 LLTLLALCGVRVFVLFFVLPATAQDSLPGMTRNGVIYVLSSFIA--YGQPADALARIEAA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
LV E F+G + G + G +I G N + TP++++
Sbjct: 76 GLVGLVFKEAFIGLLIGFAASTVFWVAESVGLLIDDVSGYNNVQMINPLSGEQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + S + +++L
Sbjct: 136 LMQLAIVSFYALGGMLMLLGALFESFRWWPLSQLMPDMGAIGESFVIQQTDGMMAAIVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S+P + ++ +++IG + + ++ +S P L L L L + + Q +
Sbjct: 196 SAPVMLVLVLVDLAIGFVARAADKLDPSNLSQPIRGVLALLLLALLTSVFIAQSGDAL 253
>gi|312883876|ref|ZP_07743593.1| Type III secretory pathway, component EscT [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368334|gb|EFP95869.1| Type III secretory pathway, component EscT [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 222
Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 79/211 (37%), Gaps = 3/211 (1%)
Query: 37 QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQF 96
+R + ++ + P + DL + + ++ E+ LG + G + +
Sbjct: 1 MIRNGVLCSIALFIFPMVQQQ-DLPAEADGLWLMVILGKEVLLGLLIGFFAAIPFWAIDA 59
Query: 97 TGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTI 156
G ++ G + + + TP L+ + + YAL SY +
Sbjct: 60 AGFLVDNQRGAAMASMFNPTLGGQSTPTAVLLTQTLITLFFSSGGFVVFMYALFTSYTSW 119
Query: 157 PIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYF 214
P+ S F + ++ + +S+P + + + L+++ PQ+ ++
Sbjct: 120 PVMIFFPTVTDAWVSFFYAQFEQLLLLGVLMSAPLVLAMFLAEFGLALISRFAPQLNVFS 179
Query: 215 ISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++ P + S+ L + + +++ F F
Sbjct: 180 LAMPIKSAVASVLLIVYVGLMMNHFESLFSE 210
>gi|284007637|emb|CBA73292.1| type III secretion inner membrane protein YscT,HrcT,SpaR,EscT,EpaR1
[Arsenophonus nasoniae]
Length = 256
Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 1/211 (0%)
Query: 30 SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRV 89
+ +R + F++ + P + L EL +G V G +
Sbjct: 26 GGAMGSSLIRNSLVLVFALPIAPIIKTMPIDFTHQTVIELVFLYSEELLIGLVLGFCAAI 85
Query: 90 YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYAL 149
+ G +I T G ++ T + L + L I + V + + AL
Sbjct: 86 PFWAIDMAGFIIDTLRGASMSTILNPLMGLQSSIFGMLFTQILSVLFLVSGGFNALLTAL 145
Query: 150 VKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVP 208
SY +P L+F F+ + + + P + I+ ++++GL+N+ V
Sbjct: 146 YHSYNVLPPNAPLSFNASLLLFIQQQWHMMLELCMSFAMPAMVVMILVDVALGLINRSVE 205
Query: 209 QIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
Q+ ++F+S P L L +S+ +
Sbjct: 206 QLNVFFLSMPIKSVLVVFLLLVSMYFAFNHY 236
>gi|307131232|ref|YP_003883248.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
gi|306528761|gb|ADM98691.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
Length = 267
Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +L L V R+ C+ L+P S + I +R A+A ++V + + L +
Sbjct: 13 FIYALTLGVARLYPCLFLVPLFSFTIIKGMLRNAVAIALALVPAGAIQQQM-LTTTITWP 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ EL +G + G+++ + + G++ G + + TPL +
Sbjct: 72 MLPGLLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDATPLGHM 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + ++ L + L SY P L F +++++L+ TF M+
Sbjct: 132 MKELFMMMLIITIGFPGFTQLLWDSYRLWPALDFLPPLSEQGFHTYLDLLKDTFQHMIVY 191
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI +L+ PQ+ +Y +STP G F L + ++
Sbjct: 192 AGPLVALLLLLEFSIAILSLYSPQLQVYVLSTPAKCLAGMAFFVLYMPVL 241
>gi|289808549|ref|ZP_06539178.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 178
Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 3/170 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS IP +V+L + ++V+ P L +
Sbjct: 12 WLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPAN---DTPLFSI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L M ++ +G G ++ ++ G I +GL+ T + L L +
Sbjct: 69 AALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARI 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177
+ ++ +L + H + LV ++ T+PIG N F +
Sbjct: 129 MDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGL 178
>gi|291484191|dbj|BAI85266.1| hypothetical protein BSNT_02670 [Bacillus subtilis subsp. natto
BEST195]
Length = 194
Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 71/177 (40%), Gaps = 3/177 (1%)
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L E +G GL+ + +Q GS I +G ++ + + I
Sbjct: 1 MLLAFKEALVGLCLGLIAYMMIAAVQIAGSFIDFQMGFSIANVIDPQTGAQSPLIGQFIY 60
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN---IFSSFVNMLQTTFMIMLRLS 186
+ LL + ++ HH + + S+ I + Q F+I ++S
Sbjct: 61 TMALLFMLSVNAHHLLLDGIYYSFQYISVDQAFPNFGDEKFAYFIAKSFNAMFIIAFQMS 120
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+P + + ++++G++ + VPQ+ ++ + P I + + L + + +I + F
Sbjct: 121 APVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNVF 177
>gi|228958049|ref|ZP_04119784.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228801566|gb|EEM48448.1| Type III secretion system inner membrane R protein [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 243
Score = 86.9 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 85/213 (39%), Gaps = 4/213 (1%)
Query: 30 SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRV 89
S IP ++ F + SI + D +D+ + + ++ +G ++ +
Sbjct: 17 SGRSIPAMAKVTFGLGLSI----TVADQVDVSHIKTVWDVAAYAATQIVIGLSLSKIVEM 72
Query: 90 YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYAL 149
+ G ++ IGL+ + ++ T L++L + L+ + + +
Sbjct: 73 LWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTLFDMFFLIIFISLGGINYFVATI 132
Query: 150 VKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQ 209
+KS+ +L + S + L + ++ P + + N + L+ K PQ
Sbjct: 133 LKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPLMGSLFIINFVLILIAKNAPQ 192
Query: 210 IPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ ++ + I G LF+ +S+ ++ Y F +
Sbjct: 193 LNVFMNAYVIKITCGILFIAMSVPMLGYVFKNM 225
>gi|313110377|ref|ZP_07796266.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
gi|310882768|gb|EFQ41362.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
Length = 262
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 5/232 (2%)
Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ SC ++LP L+ + VR A + ++ P + ++ + + L+ E
Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPA--LGALDIALLIGKE 76
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ LG + G + + ++ TG +I G L +++ S +P L+ +
Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTLNPSLGSQTSPTGLLLTQTLITLF 136
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + +L +SY + P+ + F M+ ++P L
Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQFGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + L+++ P + ++ ++ P + SL L L + I++ + L
Sbjct: 197 LAEFGLALISRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDALLLA 248
>gi|299822254|ref|ZP_07054140.1| flagellar biosynthetic protein FliR [Listeria grayi DSM 20601]
gi|299815783|gb|EFI83021.1| flagellar biosynthetic protein FliR [Listeria grayi DSM 20601]
Length = 253
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/240 (18%), Positives = 87/240 (36%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ + R+ S I P L + IP V++ F +A S + + + N
Sbjct: 4 QFLLATVIAFSRIASFIYFFPLLKSTAIPNSVKVIFGLALSFPVAGMV----KVGNIHTL 59
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
V E+ G LI + L + G +I +G + + S + +
Sbjct: 60 TDLLIRVSAEVVFGLALAKLIEMIALVPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
++ ++ + + + L+KS+ Q L + L + L+
Sbjct: 120 ILDTFFVIVFLSLQGLDYLMFYLLKSFQFTASIQILFEQGFIRLLIATLAFALTSAVSLA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + NI + ++K PQI I+ + I LG L ++ +I F H
Sbjct: 180 LPIMGSIFIVNIILAFISKSAPQINIFMNAFMVKITLGIFILACAVPVISTVFRHLTNDM 239
>gi|229918644|ref|YP_002887290.1| flagellar biosynthetic protein FliR [Exiguobacterium sp. AT1b]
gi|229470073|gb|ACQ71845.1| flagellar biosynthetic protein FliR [Exiguobacterium sp. AT1b]
Length = 256
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 7/238 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ L R+ + +P S +P+ R+ F+ + + L + I + N
Sbjct: 6 FISMYGLTFARLSGFFVSVPLFSTRQLPVMHRVGFSAFLAYYAMFTLTEPIQMTN----- 60
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ V+ E+ +G + GLLI + Q G VI +GL + ++ +
Sbjct: 61 AFVLQVVYEVMIGLLLGLLINILFFAPQIAGGVIDLQLGLAMASAYDPMFGGQSPLIGRF 120
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFMIMLRL 185
I L L + H + + S+ P GQ + V ++ T M+ L+L
Sbjct: 121 YYIFTLFILLTSNLHLLLIDGIYYSFQIYPPGQPMINFTEASLMMAVKVVTMTMMVALQL 180
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ P + ++ ++++G L K PQ I+ I + + G + L + + + S
Sbjct: 181 ALPMMASLLLVDLALGFLAKSAPQFNIFAIGFSFKLIAGFAVMVLLMGLTLTGISQFI 238
>gi|332297776|ref|YP_004439698.1| flagellar biosynthetic protein FliR [Treponema brennaborense DSM
12168]
gi|332180879|gb|AEE16567.1| flagellar biosynthetic protein FliR [Treponema brennaborense DSM
12168]
Length = 279
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 8/245 (3%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWD----TIDLQNFVNRA 67
L+ R + IM LP SM + ++ + ++LP +
Sbjct: 12 YLLVAVRCFALIMTLPLFSMRGVSRAAKIAVTGYVAFLVLPVSYGAGYEQFIDIYGAFTL 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
Y L++ E LG + G I V G S +GL+ + + +
Sbjct: 72 EYVLLLIGEGLLGIITGFYISVIFAAFSTAGQFFSFQMGLSAAEAYDSLSQVENPLMGQY 131
Query: 128 IGIIGLLALWVIDFHH-QVFYALVKSYGTIPIGQELNF---GNIFSSFVNMLQTTFMIML 183
+ +I +L + + +S+ ++ + + ++ L F L
Sbjct: 132 LNLIAMLLFLQVKGFQQLFLGGIFRSFQSLNALALVLPETRSAFLNFLLSGLTDLFFDAL 191
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+S P + + + ++++GLL+K PQ+ + P + +G L L L + + F SF
Sbjct: 192 MISLPMVGTFFLVSVAMGLLSKAAPQMNLLSEGIPLTMLVGFLLLFLLLPSMCDLFVRSF 251
Query: 244 LYGFF 248
F+
Sbjct: 252 DTAFY 256
>gi|253688599|ref|YP_003017789.1| type III secretion protein SpaR/YscT/HrcT [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251755177|gb|ACT13253.1| type III secretion protein SpaR/YscT/HrcT [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 266
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 102/230 (44%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++ L + R+ C +L+P LS++ + +R ++ +++ P + + L ++
Sbjct: 11 FIIAITLGIARLYPCFILVPVLSLNVLKGMMRNAVVISLTLLPAPIVQQQL-LLTPLSWP 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ E+ +G + L++ + + G++ G + + + TPL L
Sbjct: 70 MLPGLLLKEIIVGLLIALILAMPFWLFESVGALFDNQRGALMGGQLNPALGSDATPLGHL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185
+ +L L + + + SY P+ L F ++++L TF ++
Sbjct: 130 LKQTLILLLIIGIGLKGLTQLIWDSYQIWPVLSWLPAPGEQGFEVYLDLLADTFTHLVVY 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI LL+ PQ+ ++ +S P +G F + + ++
Sbjct: 190 AGPLVALLLLLEFSIALLSLYSPQLQVFVLSIPAKCLVGMAFFIVYLPVL 239
>gi|116049641|ref|YP_791554.1| translocation protein in type III secretion [Pseudomonas aeruginosa
UCBPP-PA14]
gi|296389925|ref|ZP_06879400.1| translocation protein in type III secretion [Pseudomonas aeruginosa
PAb1]
gi|115584862|gb|ABJ10877.1| translocation protein in type III secretion [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 262
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 5/232 (2%)
Query: 18 RVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVE 76
R+ SC ++LP L+ + VR A + ++ P + ++ + + L+ E
Sbjct: 19 RIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPA--LGALDIALLIGKE 76
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
+ LG + G + + ++ TG +I G L +++ S +P L+ +
Sbjct: 77 VLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTLNPSLGSQTSPTGLLLTQTLITLF 136
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + +L +SY + P+ + F M+ ++P L
Sbjct: 137 FSGGAFLALVGSLFRSYASWPVSSFFPQFGSQWVAFFYAQFSQMLMLCALFAAPLLIAMF 196
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + L+++ P + ++ ++ P + SL L L + I++ + L
Sbjct: 197 LAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDALLLA 248
>gi|145301465|ref|YP_001144304.1| AscT protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|38201231|emb|CAD56766.1| ascT protein [Aeromonas salmonicida subsp. salmonicida]
gi|66947956|emb|CAE83093.1| AscT protein [Aeromonas salmonicida subsp. salmonicida]
gi|142856347|gb|ABO92556.1| AscT protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 262
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 97/236 (41%), Gaps = 5/236 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ M++ L++ R SC ++LP LS + +R + ++ P + DT+ Q +
Sbjct: 7 QAQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVVCSLALYAYPTVADTLPDQ--I 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ + L+ E+ LG + G + + ++ +G +I G + + S +P
Sbjct: 65 DGMALAMLIAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMGSLFNPSLGSQTSPT 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIM 182
L+ + + + AL +SY + P+ + F ++
Sbjct: 125 GLLLTQTLITLFFASGAFLALLTALFQSYTSWPVAHFFPTIDEQWVNFFYGQFSHMLLLC 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L++P L + + L+++ P + + ++ P + SL L + I++++
Sbjct: 185 ALLAAPLLIAMFLAEFGLALISRFAPSLNAFVLAMPIKSAVASLLLVIYIKLMMDH 240
>gi|197286515|ref|YP_002152387.1| type III secretion system protein [Proteus mirabilis HI4320]
gi|227357589|ref|ZP_03841942.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
gi|194684002|emb|CAR45290.1| putative type III secretion system protein [Proteus mirabilis
HI4320]
gi|227162299|gb|EEI47303.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
Length = 257
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 98/245 (40%), Gaps = 8/245 (3%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ ++ +FL++ R+ M +P L+ + Q+ + ++ + P + T L+
Sbjct: 9 QSYLIDIFLLIARLFPIFMFIPFLNSRVLNSQLLKYIIIFYIALGIKPSITITGVLRE-- 66
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
++ +++ EL +G V GLL+ G + G ++ ++ + + +
Sbjct: 67 ---TWAIVLISELIIGLVIGLLLATPFWIASAFGEFVDNQRGASIGDTINPTTGIESSEF 123
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLR 184
SL G+ + + + +SY PIG +N + + L + +
Sbjct: 124 ASLTGLFCMAYFLATGGLVVLMSTIKESYDVFPIG-YINKNIGYDFIGHWLNDMVKVAII 182
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI-EIIVYQFSHSF 243
L SP L + +++G+ + PQ+ + +S + L L L + + H F
Sbjct: 183 LVSPVLITMFLSEVALGVYSLFCPQLNAFSLSLCIKGIIAFLVLLLFFTSAMTNELYHFF 242
Query: 244 LYGFF 248
+F
Sbjct: 243 NSRYF 247
>gi|333003046|gb|EGK22600.1| flagellar biosynthetic protein FliR [Shigella flexneri VA-6]
Length = 234
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 30/240 (12%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ F + RV + I P LS +P +V+L AM + + P L V
Sbjct: 12 WLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN---DVPVFSF 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L + ++ +G G ++ ++ G +I +GL+
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLS------------------- 109
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ H + LV ++ T+PIG E N F + F+ L L+
Sbjct: 110 --------FATFNGHLWLISLLVDTFHTLPIGSEPLNSNAFLAPTKAGSLIFLNGLMLAL 161
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + N+++GLLN++ PQ+ I+ I P + +G + + +I H F F
Sbjct: 162 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 221
>gi|323388138|gb|ADX60334.1| type III secretion protein RscT [Pseudomonas fluorescens]
Length = 263
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 92/241 (38%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C L+P +I R M +++ P + + +++
Sbjct: 6 EFLPSLLVAMARIYPCAFLVPAFCFQHIRGMPRHIIVMVMALIPAPGIHAVLAAKDYSAL 65
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
S LV+ E LG + G+L+ + + G+++ G + S TP+
Sbjct: 66 M-ISGLVLKEAALGFLLGILLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGH 124
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L + + L + + + SY P L N FS F+ +L TF M+
Sbjct: 125 LFKQLVIYLLIAVLGLSVLTQVIWDSYLIWPPTAWLPLPAVNGFSVFIGLLGDTFTHMML 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++PF+ + LL PQ+ + ++TP G + L L ++
Sbjct: 185 YAAPFIAVLLFLEFGFALLGLYSPQLQVSTLATPVKSLAGLVILLLYFPLLQDLIVGRMA 244
Query: 245 Y 245
Sbjct: 245 Q 245
>gi|91791411|ref|YP_561062.1| type III secretion system inner membrane R protein [Shewanella
denitrificans OS217]
gi|91713413|gb|ABE53339.1| type III secretion system inner membrane R protein [Shewanella
denitrificans OS217]
Length = 261
Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 98/239 (41%), Gaps = 2/239 (0%)
Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
E + L L CRVG L MS IP +R I L ++
Sbjct: 14 DMEQYLKVLGLFYCRVGIVFWLPLVGPMSRIPTSIRFIIVNVIVIALFSLQGAPAVIEVD 73
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
+N Y L+ +E G L++ V + L F G I IGL + ++
Sbjct: 74 LNTRSYLTLLAIEFITGITFSLILAVPAVVLLFFGRAIDMQIGLGASGIFNPTSQTQDSL 133
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
L L L W + H V L++S +P+GQ N + F+ T F++ L
Sbjct: 134 LGVLFSFAALTLFWSLGLHLDVLKILIESIKVLPLGQTRNVEAMV--FIEYFSTAFVLGL 191
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
L +P + + +I G+++K +PQ+ IYF+ P I +G + L +++ + F
Sbjct: 192 ILFAPVIIMLFIVDICSGIISKSMPQMSIYFVIMPLKIMIGFIVLTITLTNLASHFEML 250
>gi|304321149|ref|YP_003854792.1| Flagellar biosynthesis pathway, component FliR [Parvularcula
bermudensis HTCC2503]
gi|303300051|gb|ADM09650.1| Flagellar biosynthesis pathway, component FliR [Parvularcula
bermudensis HTCC2503]
Length = 256
Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 112/242 (46%), Gaps = 3/242 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +++ I R+ + ++LLPGL IP++VRL + + +LP + D ++
Sbjct: 14 QAFIIAAVAIFARLTAMLVLLPGLGQLAIPVRVRLMAGLVMTSTILPVILDRPLPALAIS 73
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L++ E+ +G G R++ L G++++ + L+ G ++ +
Sbjct: 74 DP--LVLIVFEVVIGAALGYGFRIFIWALSIAGTIVAQSASLSQLFGAG-LNTEPNPSVG 130
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
L+ + G ++FH + + +SY P+G+ + + F + + L
Sbjct: 131 LLLTMAGATLFMTMEFHVRAVGLIAESYELFPLGELPRTDVLAEWATHRAMAAFALGVSL 190
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
S PFL ++NI +G++N+ +PQ+ + FI P + L L +++ +I+ +
Sbjct: 191 SLPFLLVNFLYNIVLGMMNQAMPQMMVTFIGVPANVLAALLLLAVAMPMILLVWLARTET 250
Query: 246 GF 247
GF
Sbjct: 251 GF 252
>gi|238023718|ref|YP_002907950.1| type III secretion-associated protein [Burkholderia glumae BGR1]
gi|237878383|gb|ACR30715.1| Type III secretion-associated protein [Burkholderia glumae BGR1]
Length = 277
Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/244 (14%), Positives = 83/244 (34%), Gaps = 4/244 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ + + P + + VR + FS + + + ++
Sbjct: 17 GYLTLIGVCSVRLFVIVTIFPPSADGVLQGPVRNAIVLLFSTFVA--YGQPLAFADGLHG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A ++ + E +G V G + G I G N + TP +
Sbjct: 75 AALVEIGLREGMIGLVLGFAASSVFWVAECAGYYIDDLTGYNNAQVQNPLRNEQATPTAT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLR 184
L+ + +A W + + L +SY P+ + + + T + +
Sbjct: 135 LLQQVATMAFWSLGGMTFLLGTLYQSYHWWPLNAPTIDVSNVLEAFAMKQTDTLMQQVAK 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L++P + ++ + + K ++ + +S P + L L L + + V Q
Sbjct: 195 LAAPAVMILLLIDFAFAFAAKSASKLELMGLSQPVKGAVAVLLLALFVGVFVDQVRDQLT 254
Query: 245 YGFF 248
F
Sbjct: 255 LSAF 258
>gi|310766416|gb|ADP11366.1| HrcT [Erwinia sp. Ejp617]
Length = 265
Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 100/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L R+ C++L P S + + VR +A S++ L + +Q +
Sbjct: 11 QFLFALTLGAARIYPCLILTPVFSFNILKGMVRTGVVLALSLMPAIGLQAQLAVQMP-DW 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ +G + GLL+ + Q G++ G + + + TPL
Sbjct: 70 PQLIGLMLKEVTIGILLGLLLGMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGL 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L+ +L L + + + SY P+ Q L F ++ +L TF ++
Sbjct: 130 LLQQTLILLLILSIGLSGITQIIWDSYRIWPVLQWLPLPQEEGFKQYLALLADTFTHIII 189
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ P + ++ + SI +L+ PQ+ ++ +S P +G LF L I + L
Sbjct: 190 YAGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFLLYIPTLNALGEDRLL 249
Query: 245 Y 245
Sbjct: 250 Q 250
>gi|83646792|ref|YP_435227.1| flagellar biosynthesis pathway protein FliR [Hahella chejuensis
KCTC 2396]
gi|83634835|gb|ABC30802.1| Flagellar biosynthesis pathway, component FliR [Hahella chejuensis
KCTC 2396]
Length = 226
Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 2/215 (0%)
Query: 33 YIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTL 92
+P ++R A +++++ +Q + + EL LG L +
Sbjct: 4 RLPGRIRFFLVCALALLMV-RFSPATGVQLPSSVVDMALACANELVLGLAMALGLHAAFT 62
Query: 93 GLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKS 152
Q G +I G M + + AE + +++ + +D HH V L S
Sbjct: 63 VFQIAGRLIDFQSGFGAANIMNPATNSAEPLMGTILLFFATFVFFSMDAHHMVIKGLAYS 122
Query: 153 YGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPI 212
+P G L + F + F + L++P L + ++ + ++ + +PQ+ +
Sbjct: 123 VAQVPPGSGLVRMD-FPGAMKQFGLMFSFAMVLAAPVLAVLFLLDVGVAVMARTMPQMNV 181
Query: 213 YFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
YF+ P + LG + LS++ + F F
Sbjct: 182 YFLFLPLKVALGIIVTALSLKYLTPLIGEVFNSIF 216
>gi|188534808|ref|YP_001908605.1| Surface presentation of antigens protein (Spa29 protein), Type III
secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029850|emb|CAO97731.1| Surface presentation of antigens protein (Spa29 protein), Type III
secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 254
Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/250 (15%), Positives = 89/250 (35%), Gaps = 8/250 (3%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTID 59
+ ++ + + + RV LLP L + + V+ + L P ++
Sbjct: 6 LYLNFQHGVPIFAMAYARVAIVFYLLPVLGERVLANLIVKNTIIGLVILGLWPCFGQVLN 65
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ + L++ E +G + + + V + G ++ G L S+ + +
Sbjct: 66 PEQ-----GWFILLVKECVIGLILAMTLCVPFWIVINLGEILDNQRGATLSDSIDPVNGV 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L+ + + + LV+SY P G L + + ++L
Sbjct: 121 QSSTLSGFLNFAFGAIFFASGGMSSLMEVLVQSYQVFPTGDNLVDFR-WEAAGHLLMVLA 179
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS-IEIIVYQ 238
+ L++P + +V I +G+ + PQ+ + +S + + + I +
Sbjct: 180 EGSIMLAAPVMIVMMVAEILLGVFARFCPQLNPFSLSLTIKSFIAFIVFLFYGFKAISQK 239
Query: 239 FSHSFLYGFF 248
F FF
Sbjct: 240 PLQLFSVTFF 249
>gi|259909720|ref|YP_002650076.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcT protein [Erwinia pyrifoliae Ep1/96]
gi|224965342|emb|CAX56874.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcT protein [Erwinia pyrifoliae Ep1/96]
gi|283479806|emb|CAY75722.1| Type III secretion protein HrcT [Erwinia pyrifoliae DSM 12163]
Length = 265
Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 100/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L R+ C++L P S + + VR +A S++ L + +Q +
Sbjct: 11 QFLFALTLGAARIYPCLILTPVFSFNILKGMVRTGVVLALSLMPAIGLQAQLAVQMP-DW 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ +G + GLL+ + Q G++ G + + + TPL
Sbjct: 70 PQLIGLMLKEVTIGILLGLLLGMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGL 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L+ +L L + + + SY P+ Q L F ++ +L TF ++
Sbjct: 130 LLQQTLILLLILSIGLSGITQIIWDSYRIWPVLQWLPLPHEEGFQQYLALLADTFTHIII 189
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ P + ++ + SI +L+ PQ+ ++ +S P +G LF + I + L
Sbjct: 190 YAGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFVIYIPTLNALGEDRLL 249
Query: 245 Y 245
Sbjct: 250 Q 250
>gi|76152318|gb|ABA39819.1| HrcT [Erwinia pyrifoliae]
Length = 265
Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 50/241 (20%), Positives = 100/241 (41%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L R+ C++L P S + + VR +A S++ L + +Q +
Sbjct: 11 QFLFALTLGAARIYPCLILTPVFSFNILKGMVRTGVVLALSLMPAIGLQAQLAVQMP-DW 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ +G + GLL+ + Q G++ G + + + TPL
Sbjct: 70 PQLIGLMLKEVTIGILLGLLLGMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGL 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L+ +L L + + + SY P+ Q L F ++ +L TF ++
Sbjct: 130 LLQQTLILLLILGIGLSGITQIIWDSYRIWPVLQWLPLPHEEGFQQYLALLADTFTHIII 189
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ P + ++ + SI +L+ PQ+ ++ +S P +G LF + I + L
Sbjct: 190 YAGPLVALLLLLDFSIAILSLYSPQLQVFVLSVPAKCLVGLLFFVIYIPTLNALGEDRLL 249
Query: 245 Y 245
Sbjct: 250 Q 250
>gi|332294883|ref|YP_004436806.1| flagellar biosynthetic protein FliR [Thermodesulfobium narugense
DSM 14796]
gi|332177986|gb|AEE13675.1| flagellar biosynthetic protein FliR [Thermodesulfobium narugense
DSM 14796]
Length = 256
Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 102/239 (42%), Gaps = 4/239 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ + + R + P S IP +V++ + FS+++ + T+
Sbjct: 10 MLIRSLMPILRFSGFFAVAPFFSTQVIPARVKILIILIFSLLITMNMKITVPDNPIT--- 66
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E+ +G G + ++ L+F G G+ + + +
Sbjct: 67 -FVFSSIFEVLIGVFMGFIFYLFLWILEFAGGFFDMQSGMGMAAFYDPQMGSETSVYGNF 125
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
++GLL + +FH+ + V+SY +P+GQ + G ++ ++ L T L ++
Sbjct: 126 FTLLGLLIFLIGNFHYILLKIFVESYYVLPVGQFIKSGPSYNLLMSTLIWTMTAGLEMAL 185
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P + + ++S+G++ + PQ+ + + P I + S+ + + + V + F Y
Sbjct: 186 PVVLILFLIDLSLGIMARTAPQLNVLLLGLPLKILITSVVIIIFLGFAVPFINQCFNYM 244
>gi|85060060|ref|YP_455762.1| type III secretion apparatus SpaR [Sodalis glossinidius str.
'morsitans']
gi|45504777|gb|AAS66867.1| SpaR [Sodalis glossinidius]
gi|84780580|dbj|BAE75357.1| type III secretion apparatus SpaR [Sodalis glossinidius str.
'morsitans']
Length = 264
Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 93/237 (39%), Gaps = 5/237 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++L ++ R+ LLP S S + + VR L P+ + ++
Sbjct: 11 EWLITLAVVSARITPAFFLLPFFSASVLSLTVRTPVIFFIGAALWPY---SFGAMASLDG 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + +++ E+ +G + +L+ + + G++I G L ++ + + L +
Sbjct: 68 ARIADILLREVAIGLLLAILLALPFWVMHGLGALIDYQRGALLSSAYDPISGVDTSELAN 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L + + + SY + + +LQT +L LS
Sbjct: 128 LFNLFFAAVFLQGGGLTLLLEVFLGSYQLCDPLE--PSLPSLAKVTTLLQTMATRILILS 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
SP L ++ IS+GLL++ PQ+ + I+ G+ + + ++ + +
Sbjct: 186 SPVLVVLLLIEISLGLLSRFAPQMNAFAIALTLKSGVTFFIILIYFAPLLPEIFRQY 242
>gi|1483324|emb|CAA68100.1| HrcT protein [Pantoea agglomerans]
Length = 265
Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 3/231 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L R+ C +L+P S + + VR +A +IV + L + LQ +
Sbjct: 11 QYLFALTLSAARLYPCFILVPIFSFNILQGMVRTGVVLALAIVPMLGLQAQLALQMP-DW 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ +G + GL++ + Q G++ G + + + TPL
Sbjct: 70 PQLIALILKEVVIGILLGLVMSMPFWLFQSVGALFDNQRGALIGGQLNPALGSDVTPLGL 129
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLR 184
L+ +L L + V + SY P+ Q L F ++++L TF ++
Sbjct: 130 LLQQTLILLLMLSLGLSGVTQIIWDSYLIWPVMQWLPLPHQQGFEQYLSLLTDTFSHIII 189
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ + SI +L+ PQ+ + +S P LG LF L I +
Sbjct: 190 YAGPLVALLLMMDFSIAILSLYSPQLQAFVLSVPAKCLLGLLFFVLYIPTL 240
>gi|225849159|ref|YP_002729323.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644067|gb|ACN99117.1| flagellar biosynthetic protein FliR [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 257
Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/246 (19%), Positives = 109/246 (44%), Gaps = 2/246 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M + ++L L+ R+ + P +S + IP V++ ++F+ + + +
Sbjct: 1 MVLITPDQAIALALVFSRIIAFFSTFPLISSTVIPHNVKVLLVVSFAFFTMLNFDIQVKV 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ L++ E+F+G GL++ + + G ++ +GL + +
Sbjct: 61 NQI-ELITFLILIVKEIFIGLSLGLIVNILISAFSYAGEIVGFLMGLTVMNMYNPAFG-Q 118
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L+ + L +V + + +L KS+ +P+ + IF + F+
Sbjct: 119 TSVLSGFFVFLFYLLFFVSGSYQILIGSLFKSFEILPLTEASINQGIFPYLIEKSGDIFL 178
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+ +++ PF+ +VFN+ + L+N+L+PQI ++FI P I +G + L S ++V
Sbjct: 179 LSFQMAFPFILVLLVFNVVLALINRLIPQINVFFIGLPAQIWIGFIVLMFSSILLVKVGL 238
Query: 241 HSFLYG 246
+
Sbjct: 239 NFIDKM 244
>gi|126174200|ref|YP_001050349.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
OS155]
gi|125997405|gb|ABN61480.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
OS155]
Length = 266
Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/213 (17%), Positives = 82/213 (38%), Gaps = 1/213 (0%)
Query: 30 SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRV 89
+ +R + F++ + + + + + L E+ +G + G +
Sbjct: 35 GGAMGSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEMIVGVLLGFCAAI 94
Query: 90 YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYAL 149
+ G VI T G ++ T + L + L + + V + + AL
Sbjct: 95 PFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTAL 154
Query: 150 VKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVP 208
+SY +P G L + + Q + L + P + I+ ++++GL+N+
Sbjct: 155 YQSYQQLPPGFNLTLAQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQ 214
Query: 209 QIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
Q+ ++F+S P L L L S++ + +
Sbjct: 215 QLNVFFLSMPIKSALVLLLLIYSLQFALSHYLQ 247
>gi|325921917|ref|ZP_08183728.1| HrcT protein [Xanthomonas gardneri ATCC 19865]
gi|325547619|gb|EGD18662.1| HrcT protein [Xanthomonas gardneri ATCC 19865]
Length = 276
Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 4/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L RV +LP + +P R S + D +
Sbjct: 18 LLTLLALCGVRVFVMFFVLPATAQDSLPGMARNGVVYVLSSFIA--YGQPADALARIEAT 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
LV E FLG + G + G +I G N TP++++
Sbjct: 76 GLVGLVFKEAFLGLLIGFAASTVFWVAESVGLLIDDVSGYNNVQMTNPLSGEQSTPVSTV 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIMLRL 185
+ + +++ + + + AL +S+ P+ Q + + +++L
Sbjct: 136 LMQLAIVSFYALGGMLMLLGALFESFRWWPLSQLTPDMGAVAESFVIQQTDGMMTAIVKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++P + ++ +++IG + + ++ +S P L L L L + + Q +
Sbjct: 196 AAPLMLVLVLVDLAIGFVARAADKLEPSNLSQPIRGILALLLLALLTSVFIAQSGDAL 253
>gi|167923486|ref|ZP_02510577.1| SctT [Burkholderia pseudomallei BCC215]
Length = 340
Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|167915642|ref|ZP_02502733.1| SctT [Burkholderia pseudomallei 112]
Length = 325
Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|167907282|ref|ZP_02494487.1| SctT [Burkholderia pseudomallei NCTC 13177]
Length = 331
Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|167828890|ref|ZP_02460361.1| SctT [Burkholderia pseudomallei 9]
gi|226200037|ref|ZP_03795586.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pakistan 9]
gi|225927889|gb|EEH23927.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei Pakistan 9]
Length = 313
Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|167743339|ref|ZP_02416113.1| SctT [Burkholderia pseudomallei 14]
Length = 319
Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|254264921|ref|ZP_04955786.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710a]
gi|254215923|gb|EET05308.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1710a]
Length = 328
Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|254301362|ref|ZP_04968806.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 406e]
gi|157811137|gb|EDO88307.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 406e]
Length = 322
Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|1648938|gb|AAB17686.1| putative [Sinorhizobium fredii]
gi|19749330|gb|AAL98700.1| Y4yN [Sinorhizobium fredii]
Length = 272
Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 85/229 (37%), Gaps = 4/229 (1%)
Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNRAYYSKLVMVELFLG 80
+++LP + S I +R C A+AF + L + D + L + L + E+F+G
Sbjct: 32 IMLILPVFTRSQIGGLIRGCLAIAFGLPCLAHVSDGLQALDPETSLIQIPLLGLKEVFVG 91
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
+ G + + GLQ G I G+ + T + S + + +GI +
Sbjct: 92 VLLGTFLGIPLWGLQAAGEFIDNQRGITSPSTQADPATSSQASAMGVFLGITAITIFVAA 151
Query: 140 DFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
V AL SY P+ + +L L +S P +FF + +
Sbjct: 152 GGVEAVLSALYGSYSIWPVYRFQPSLSTQGAVELFGLLDHIMRTTLLVSGPVVFFLGLID 211
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
IS+ +L + PQ +S P + + + ++
Sbjct: 212 ISMMMLRRFAPQFKSGQLSPPIKNIVFPIIMVTYATYLLEGIKLEITQA 260
>gi|332163588|ref|YP_004424930.1| putative type III secretion protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318608195|emb|CBY78169.1| type III secretion inner membrane protein
(YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar
export components) [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667818|gb|ADZ44461.1| putative type III secretion protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 261
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 86/228 (37%), Gaps = 5/228 (2%)
Query: 20 GSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+C ++LP LS + + +R + ++ + P + + ++ V+ L+ E
Sbjct: 21 MACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIE--VDAFTLMLLIGKEFI 78
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
LG + G + + L+ G ++ G + + + +P L+ + +
Sbjct: 79 LGLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFC 138
Query: 139 IDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
+ AL SY P+ F N +I L++P L +
Sbjct: 139 GGAFLSLLSALFHSYVNWPVASFFPEVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLA 198
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ L+++ P + ++ ++ P + SL L + ++ S + L
Sbjct: 199 EFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAML 246
>gi|166999376|ref|ZP_02265215.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei
PRL-20]
gi|243064450|gb|EES46636.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei
PRL-20]
Length = 343
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 87/236 (36%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|145284336|gb|ABP51917.1| AscT [Aeromonas veronii bv. sobria]
Length = 262
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 98/236 (41%), Gaps = 5/236 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ M++ L++ R SC ++LP LS + +R + ++ P + DT+ Q +
Sbjct: 7 QAQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVVCSLALYAYPTVADTLPDQ--I 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ + L+ E+ LG + G + + ++ +G +I G + + S +P
Sbjct: 65 DGMALAMLIAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMGSLFNPSLGSQTSPT 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIM 182
L+ + + + +L +SY + P+ + F ++
Sbjct: 125 GLLLTQTLITLFFASGAFLALLTSLFQSYISWPVAHFFPTIDEQWVNFFYGQFSHMLLLC 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L++P L + + L+++ P + ++ ++ P + SL L + I++++
Sbjct: 185 ALLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAVASLLLVIYIKLMMDH 240
>gi|254176645|ref|ZP_04883303.1| putative type III secretion inner membrane protein SctT
[Burkholderia mallei ATCC 10399]
gi|160697687|gb|EDP87657.1| putative type III secretion inner membrane protein SctT
[Burkholderia mallei ATCC 10399]
Length = 340
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 87/236 (36%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|126445934|ref|YP_001077826.1| putative type III secretion inner membrane protein SctT
[Burkholderia mallei NCTC 10247]
gi|126238788|gb|ABO01900.1| putative type III secretion inner membrane protein SctT
[Burkholderia mallei NCTC 10247]
Length = 364
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 87/236 (36%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|10955566|ref|NP_052407.1| YscT [Yersinia enterocolitica]
gi|4324353|gb|AAD16830.1| YscT [Yersinia enterocolitica W22703]
Length = 261
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 5/228 (2%)
Query: 20 GSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+C ++LP LS + + +R + ++ + P + + ++ V+ L+ E
Sbjct: 21 MACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIE--VDAFTLMLLIGKEFI 78
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
LG + G + + L+ G ++ G + + + +P L+ + ++
Sbjct: 79 LGLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTRITIIFC 138
Query: 139 IDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
+ AL SY P+ F N +I L++P L +
Sbjct: 139 GGAFLSLLSALFHSYVNWPVASFFPEVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLA 198
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ L+++ P + ++ ++ P + SL L + ++ S + L
Sbjct: 199 EFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAML 246
>gi|320538196|ref|ZP_08038091.1| flagellar biosynthetic protein FliR [Treponema phagedenis F0421]
gi|320145013|gb|EFW36734.1| flagellar biosynthetic protein FliR [Treponema phagedenis F0421]
Length = 265
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 90/238 (37%), Gaps = 3/238 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L+ R+ IM P LS V++ A + ++ P +Q + +Y
Sbjct: 15 FLLVAVRIFGMIMTTPLLSTRAFSRVVKVALAGLLAFLIFPLAVYPESIQTEIGS-HYIL 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ E LG + G I + + G S +G + + + I
Sbjct: 74 LLIGEGLLGVLTGFFINMIFVSFSTAGQFFSYQMGFGASEVYDALAQIENPLMGQFLNFI 133
Query: 132 GLLALWVIDFHH-QVFYALVKSYGTIPIGQELNFGNIFS-SFVNMLQTTFMIMLRLSSPF 189
+L + +++++ TI L I F+ +L F+ + +++P
Sbjct: 134 AVLTFLQVKGFQTLFLGGVLRNFQTINCFIFLEKQAILIPFFMQILGKLFLTAMIIAAPI 193
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + ++S+GLL K PQ+ + P I + L +++ ++ F GF
Sbjct: 194 MGTLFLIHVSMGLLTKATPQMNLLSEGFPITIMVTFFLLSVALPDMINLFIVILQQGF 251
>gi|114762170|ref|ZP_01441638.1| flagellar biosynthetic protein FliR [Pelagibaca bermudensis
HTCC2601]
gi|114545194|gb|EAU48197.1| flagellar biosynthetic protein FliR [Roseovarius sp. HTCC2601]
Length = 255
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 49/234 (20%), Positives = 106/234 (45%), Gaps = 3/234 (1%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLV 73
++ RVG+ + +LPGL +PM+VRL + ++ +LP + L + +
Sbjct: 20 VVFLRVGAMMAVLPGLGEQTVPMRVRLALGLVLTVTVLPATGADLALPPP-GLGTVAWAL 78
Query: 74 MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGL 133
+ E +G + GL +R++ LQ GS+ + + L +G S + + ++ + L
Sbjct: 79 VTESVIGLILGLWLRLFMHALQTAGSIAAQSTSLA--QLLGNSAADPMPAIGHVLTVAAL 136
Query: 134 LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
L FH +V ++ S+ P + I + + F + L++PF+
Sbjct: 137 ALLMSTGFHVKVAGFIILSFELFPALLLPDPSLIAQAGRGHIAMAFALAFTLAAPFVILS 196
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
++N+++G +NK +PQ+ + F+ P + L ++ +++ + S
Sbjct: 197 ALYNLTLGFINKAMPQLMVAFVGAPVITFGSIALLLVTAPLMLSLWIASVDRFL 250
>gi|260564095|ref|ZP_05834580.1| LOW QUALITY PROTEIN: flagellar biosynthesis protein FliR [Brucella
melitensis bv. 1 str. 16M]
gi|260151738|gb|EEW86831.1| LOW QUALITY PROTEIN: flagellar biosynthesis protein FliR [Brucella
melitensis bv. 1 str. 16M]
Length = 221
Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 105/195 (53%)
Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL 107
VLL L + + +L++ E+F+G + G+L +Y LQF ++++ A+G
Sbjct: 18 AVLLLVLQRIVTAVDAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGY 77
Query: 108 NLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167
+ + I+++ + L +++ L +V D H ++F AL+ SY IP+
Sbjct: 78 SGSPADSITENEPQATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAA 137
Query: 168 FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLF 227
F + L F+ LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L
Sbjct: 138 MIDFTDALSAAFLATLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLV 197
Query: 228 LCLSIEIIVYQFSHS 242
+ + ++ F+H
Sbjct: 198 VYFILPELLRFFTHE 212
>gi|75906096|gb|ABA29439.1| putative type III secretion system protein [Candidatus Hamiltonella
defensa]
Length = 243
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 5/229 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ + R+ P S + + +RL M + L P+ +
Sbjct: 13 LIVVLFASARLMPAFFXXPFFSNNVLTGSLRLPITMLVAFSLWPYQEKVLP---PFETFL 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
Y LV EL +G + LI L G++I G + +S+ + + L++
Sbjct: 70 YLGLVSKELLIGVLLAFLISWPFWILHAVGAIIDNQRGATISSSIDPISGVDTSELSNFF 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ +SY ++ F FS +L L L+SP
Sbjct: 130 NLFAAAVFLQGGGXXLFXEVYHQSYQICSPLRDCTF--AFSPIFAILTKLMSKSLILASP 187
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
+ ++ +GLL++ PQ+ + I+ + L + L +
Sbjct: 188 VIAVLLMTEAILGLLSRFAPQLNAFSIALTVKSLIAFLVIILYFSAFIP 236
>gi|284007675|emb|CBA73398.1| type III secretion sytem SpaR,YscT,HrcT,EscT [Arsenophonus
nasoniae]
Length = 254
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 4/238 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ ++ + +++ LI R+ +LP LS + L ++L L I +
Sbjct: 3 LYLALQNSLLNYLLIFARLAPLFFMLPFLSDRILTN---LSLKGIIILLLTLCLSPLIVM 59
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ + + + L VELF+G G+L+ G I G ++ + +
Sbjct: 60 PTWQSTSQFIALSAVELFIGLTMGILMATPFWLASAIGEFIDNQRGASIGDMLDPTTGSE 119
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L SLI + + + +++SY +PIG +N+ ++F + L M
Sbjct: 120 SSSLASLINMFCVGWFLNQGGMIEFVATIIESYQQLPIGCPINYVDLF-ALGKWLTRFIM 178
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+ + LS+P L + I +G+ + PQ+ + +S + L + + Q
Sbjct: 179 LAITLSAPLLIALFMLEIGLGVYSLFCPQLNAFSLSLTLKSIVAFGLLFILFNTTLPQ 236
>gi|167573306|ref|ZP_02366180.1| type III secretion system protein BsaY [Burkholderia oklahomensis
C6786]
Length = 245
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 37/227 (16%), Positives = 71/227 (31%), Gaps = 10/227 (4%)
Query: 21 SCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
LLP L+ I V+ A + L P + + E+
Sbjct: 20 PVFYLLPFLNDRTIVNGVVKNTIVFAVILGLWPSFAHP-------QGGALFGVALTEVAA 72
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G V G+ + + G +I G + S+ + + + + + A
Sbjct: 73 GLVLGVALSLPFWVATVVGELIDNQRGATISDSIDPATGVEASAFAPFVSLFYAAAFLQQ 132
Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199
+ AL SY T+P G + +L L L++P L + +
Sbjct: 133 GGMLTIAGALESSYATVPTGALFDVD--LLRVGALLTDLVAHGLALAAPVLIVMFLTDAL 190
Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+GL ++ PQ+ + +S + L + L+
Sbjct: 191 LGLFSRFCPQVNAFSLSLTVKSLVAFAVFHLYFVYAAPHELTALLHA 237
>gi|53722652|ref|YP_111637.1| type III secretion protein [Burkholderia pseudomallei K96243]
gi|167820521|ref|ZP_02452201.1| SctT [Burkholderia pseudomallei 91]
gi|52213066|emb|CAH39104.1| putative type III secretion protein [Burkholderia pseudomallei
K96243]
Length = 343
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|254193912|ref|ZP_04900344.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei S13]
gi|169650663|gb|EDS83356.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei S13]
Length = 358
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|254185073|ref|ZP_04891662.1| SctT [Burkholderia pseudomallei 1655]
gi|184215665|gb|EDU12646.1| SctT [Burkholderia pseudomallei 1655]
Length = 370
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|300871795|ref|YP_003786668.1| flagellar biosynthesis protein FliR [Brachyspira pilosicoli
95/1000]
gi|300689496|gb|ADK32167.1| flagellar biosynthesis protein, FliR [Brachyspira pilosicoli
95/1000]
Length = 253
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 8/238 (3%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75
+ R + +++ P S + IP ++ A + + P + +T +Q Y ++
Sbjct: 1 MVRFLAILIVAPMFSSNVIPNTIKAGLAFIATATIFPLVANT-SVQAAPTFLEYFLSLLN 59
Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135
E +G + G L+ + L Q T + +G + ++ + L L ++ +L
Sbjct: 60 EALIGLLIGFLMSMIFLAFQVTTNFFEIQMGFGISEAVDPISQITVPVLGQLQALVVILI 119
Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQ-------ELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
ID + V L S+ +P+ +F + + + + F I L L+ P
Sbjct: 120 FIAIDGQNWVIRTLYNSFKAMPVLSDASKAVFLGSFQGVIDRMIYYMSSMFSIALSLALP 179
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + ++S+GLL K PQ+ I + P I +G + + I ++ F
Sbjct: 180 IMLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIAVGIVAYYILIPALIANFMKILQNT 237
>gi|108757930|ref|YP_633784.1| FliR/MopE/SpaR family exporter [Myxococcus xanthus DK 1622]
gi|108461810|gb|ABF86995.1| bacterial export protein, FliR/MopE/SpaR family [Myxococcus xanthus
DK 1622]
Length = 264
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 2/213 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ + L R+ L P L P VRL ++ S+ L +D A
Sbjct: 17 IIVVALCAARLLPMTFLCPLLGGQATPTMVRLALVLSLSLFLRVEAGVVLDAPVTSAVA- 75
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
LV+ EL G GL+ + + G I G + + S+ E+ +
Sbjct: 76 LGGLVIRELLFGTSVGLVAALPFDAARMGGRFIDLLRGTSAEASL-PLAGSRESAAGEGL 134
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ + + V ++++ +G + +G + V + L + +P
Sbjct: 135 YHLLVALVVSGGMWPLVISSVLRGFGVVKLGAFVPTEAATLHVVLLAGAAMATGLAVGAP 194
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221
+ + +GL ++ PQ+ + + TP I
Sbjct: 195 IAAAVLTVDCFLGLASRAAPQVNLQEVGTPLKI 227
>gi|171319014|ref|ZP_02908141.1| type III secretion system inner membrane R protein [Burkholderia
ambifaria MEX-5]
gi|171095769|gb|EDT40722.1| type III secretion system inner membrane R protein [Burkholderia
ambifaria MEX-5]
Length = 263
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 85/236 (36%), Gaps = 5/236 (2%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L L++ R ++ +P L + R+ A+A ++ P + TI +A +
Sbjct: 14 LALLLSRGYGLLLAIPPLMKAGQGWMTRVPIALAIALPTFPLAYQTIPDTLAGGQAVFI- 72
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-AETPLNSLIGI 130
+ EL LG + G+ + + G+++ GL + + + T
Sbjct: 73 -AVRELALGALTGIFMLPLFAVPRAVGTLVDQQAGLMSIQLFDPTSAERSATIFADAFEQ 131
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
L V + S+ P+ + ++ + F +R ++P
Sbjct: 132 TALFMFVVAGGFGVLAELYAASHRFWPVAATDLPSIEHVTDLATRGVGAMFDSAIRYAAP 191
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
F+ I+ IGL+ + PQ+ + S + L + + V F ++F
Sbjct: 192 FVATLILLEYGIGLIGRAAPQLNVLTTSVALKLVATLLLVAIVGPFFVDAFGNAFD 247
>gi|304408583|ref|ZP_07390204.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
OS183]
gi|307305411|ref|ZP_07585159.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
BA175]
gi|304352404|gb|EFM16801.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
OS183]
gi|306911714|gb|EFN42139.1| type III secretion protein SpaR/YscT/HrcT [Shewanella baltica
BA175]
Length = 266
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 37/213 (17%), Positives = 82/213 (38%), Gaps = 1/213 (0%)
Query: 30 SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRV 89
+ +R + F++ + + + + + L E+ +G + G +
Sbjct: 35 GGAMGSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEMIVGVLLGFCAAI 94
Query: 90 YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYAL 149
+ G VI T G ++ T + L + L + + V + + AL
Sbjct: 95 PFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTAL 154
Query: 150 VKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVP 208
+SY +P G L + + Q + L + P + I+ ++++GL+N+
Sbjct: 155 YQSYQQLPPGFNLTLAQPLMMFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQ 214
Query: 209 QIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
Q+ ++F+S P L L L S++ + +
Sbjct: 215 QLNVFFLSMPIKSALVLLLLIYSLQFALSHYLQ 247
>gi|237509083|ref|ZP_04521798.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei MSHR346]
gi|235001288|gb|EEP50712.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei MSHR346]
Length = 328
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|217422557|ref|ZP_03454060.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 576]
gi|217394788|gb|EEC34807.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 576]
Length = 319
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|167898949|ref|ZP_02486350.1| SctT [Burkholderia pseudomallei 7894]
Length = 334
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|167724374|ref|ZP_02407610.1| SctT [Burkholderia pseudomallei DM98]
Length = 328
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|126455595|ref|YP_001076240.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106a]
gi|242311306|ref|ZP_04810323.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106b]
gi|126229363|gb|ABN92776.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106a]
gi|242134545|gb|EES20948.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 1106b]
Length = 322
Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|254359177|ref|ZP_04975449.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei
2002721280]
gi|148028364|gb|EDK86324.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei
2002721280]
Length = 337
Score = 85.3 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 87/236 (36%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|124383223|ref|YP_001025742.1| putative type III secretion inner membrane protein SctT
[Burkholderia mallei NCTC 10229]
gi|261827184|gb|ABN00025.2| putative type III secretion inner membrane protein SctT
[Burkholderia mallei NCTC 10229]
Length = 328
Score = 85.3 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 87/236 (36%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|53716409|ref|YP_106212.1| putative type III secretion inner membrane protein SctT
[Burkholderia mallei ATCC 23344]
gi|67640498|ref|ZP_00439302.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
mallei GB8 horse 4]
gi|254205057|ref|ZP_04911410.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei JHU]
gi|52422379|gb|AAU45949.1| putative type III secretion inner membrane protein SctT
[Burkholderia mallei ATCC 23344]
gi|147754643|gb|EDK61707.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia mallei JHU]
gi|238521218|gb|EEP84671.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
mallei GB8 horse 4]
Length = 334
Score = 85.3 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 87/236 (36%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALIPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPFGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|134281982|ref|ZP_01768688.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 305]
gi|134246511|gb|EBA46599.1| type III secretion apparatus protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 305]
Length = 310
Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 87/236 (36%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACAKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|126444370|ref|YP_001063284.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 668]
gi|126223861|gb|ABN87366.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
pseudomallei 668]
Length = 322
Score = 84.9 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + I ++ A
Sbjct: 19 FIVLLALSSERLLVLMAILPATADNVMKGPMRSGAAAVWCLFVAGGQQALIPQ---LHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMIACVKEAVIGLVLGIAASTVFWAAEAIGTYLDDVAGFNNVQMQNPSSGAQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +S+ P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWLLGGMTFLLGALYESFAWWPLGSFDPVPAPLLEMFAQARIDMLMNMIARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
++P + ++ ++ + + + ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVARSAQKLDLMSVSQPLKGAIAVLIVAVLAGNFVSEMRG 251
>gi|289624373|ref|ZP_06457327.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646628|ref|ZP_06477971.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868643|gb|EGH03352.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 272
Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 92/228 (40%), Gaps = 2/228 (0%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P + + +R C A+A S+ ++ ++ + + + L++ EL +
Sbjct: 28 MGVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLI 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + GLL + + G +I G ++ + + + +L+ ++ + ++
Sbjct: 88 GLLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLITLFFMS 147
Query: 140 DFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ SY P+ + L +S + +L I + + +P L ++ +
Sbjct: 148 GGFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLIAMLITD 207
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + L+++ P + I+ +S P ++ + + I ++
Sbjct: 208 LMLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIDQLAQ 255
>gi|94496748|ref|ZP_01303323.1| translocation protein in type III secretion [Sphingomonas sp.
SKA58]
gi|94423761|gb|EAT08787.1| translocation protein in type III secretion [Sphingomonas sp.
SKA58]
Length = 268
Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 78/220 (35%), Gaps = 4/220 (1%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
++ + + R G ++P + + IP VR + F V + + +
Sbjct: 18 LLLVGIASARFGFAFAIIPLFAQNTIPATVRNAIILTFGGVAFALQPNFMVQD--IGTFG 75
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
++ +++ E +G G ++ G +I +G + + + + SL+
Sbjct: 76 WAIMLLREAGIGIAIGFFFATILWAMEAAGEIIDAKVGATIGQILEPNGGTMTSLTGSLL 135
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLS 186
+ + + +++S+ PI + F + L +
Sbjct: 136 QRLAHVLFAAWGGLLLLVGTIMESFVIWPIAKSWPVLDPQSLILFEGEFGRLMTLALVFA 195
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL 226
+P L V + ++GLLN+ Q+ ++ +S +
Sbjct: 196 APILVMLYVVDAALGLLNRFAQQLNVFSLSLSIKSWAATA 235
>gi|28373023|ref|NP_783681.1| YscT [Yersinia enterocolitica]
gi|32470294|ref|NP_863529.1| YscT [Yersinia enterocolitica]
gi|122815818|ref|YP_001004084.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|14579352|gb|AAK69229.1|AF336309_24 YscT [Yersinia enterocolitica]
gi|23630595|gb|AAN37551.1| YscT [Yersinia enterocolitica]
gi|121663692|emb|CAL10054.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|310923237|emb|CBW54703.1| YscT, T3SS component [Yersinia enterocolitica (type O:8)]
Length = 261
Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 85/228 (37%), Gaps = 5/228 (2%)
Query: 20 GSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+C ++LP LS + + +R + ++ + P + + ++ V+ L+ E
Sbjct: 21 MACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIE--VDAFTLMLLIGKEFI 78
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
LG + G + + L+ G ++ G + + + +P L+ + +
Sbjct: 79 LGLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFS 138
Query: 139 IDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
+ AL SY P+ F N +I L++P L +
Sbjct: 139 GGAFLSLLSALFHSYVNWPVASFFPEVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLA 198
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ L+++ P + ++ ++ P + SL L + ++ S L
Sbjct: 199 EFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKVML 246
>gi|298487106|ref|ZP_07005156.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298158349|gb|EFH99419.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 272
Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 92/228 (40%), Gaps = 2/228 (0%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P + + +R C A+A S+ ++ ++ + + + L++ EL +
Sbjct: 28 MGVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLI 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + GLL + + G +I G ++ + + + +L+ ++ + ++
Sbjct: 88 GLLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLITLFFMS 147
Query: 140 DFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ SY P+ + L +S + +L I + + +P L ++ +
Sbjct: 148 GGFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLIAMLITD 207
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + L+++ P + I+ +S P ++ + + I ++
Sbjct: 208 LMLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIDQLAQ 255
>gi|194435374|ref|ZP_03067573.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
dysenteriae 1012]
gi|194416384|gb|EDX32554.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
dysenteriae 1012]
Length = 256
Score = 84.9 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 81/230 (35%), Gaps = 5/230 (2%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
+ R+ LP L+ I +R+ + + + L+
Sbjct: 20 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVA---SGLITSGKVDIGSSVFEHVYFLMF 76
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
E+ +G + + + GS+I G L +S+ ++ + + L + +
Sbjct: 77 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 136
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ++ SY P+ + +F S+ + L + L+SP + +
Sbjct: 137 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--VSNILTFLTLLASQAVILASPVMIVLL 194
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ + +G+L++ PQ+ + +S L + + I + FL
Sbjct: 195 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIVFICSSTIYFSKVQFFL 244
>gi|254575134|gb|ACT68035.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
DC283]
Length = 254
Score = 84.9 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 90/231 (38%), Gaps = 5/231 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ ++ + +++ ++ R+ +LP L + V +A +I+ LW +
Sbjct: 6 LYLNFQHSVLTFVMVYARLAIVFYMLPALGERVLSNLVIKNTIIALTII---GLWPSFAT 62
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ ++ L+ E +G + + + + G ++ G + S+ + +
Sbjct: 63 VVMPEQGWFIILI-KEFVVGLILAATLCIPFWIVTGLGEILDNQRGATISDSIDPVNGVQ 121
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L+ L+ +V ++ +V+SY +P G L+ G + +LQ
Sbjct: 122 SSILSGLLSFAFGAIFFVSGGMLKLMEVMVQSYEMLPRGSSLD-GIRWEHAGVLLQVLMQ 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231
+ L++P + + + +G+ + PQ+ + +S + +
Sbjct: 181 NSIMLAAPIMLVMMTAEMLLGVFARYCPQLNPFSLSLTVKSTIAFIVFLFY 231
>gi|225850261|ref|YP_002730495.1| flagellar biosynthetic protein FliR [Persephonella marina EX-H1]
gi|225646347|gb|ACO04533.1| flagellar biosynthetic protein FliR [Persephonella marina EX-H1]
Length = 260
Score = 84.9 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 109/237 (45%), Gaps = 2/237 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL-Q 61
+ I ++ L++ R+ + P L+ IP VR+ ++ S ++ +
Sbjct: 4 LITPEIAITFGLVLSRIIGIFLSFPLLNTGLIPANVRILLVVSLSFYIMKIFGINAGISP 63
Query: 62 NFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE 121
+ Y LV+ EL +G + GLL+ ++ + +IS +G + +
Sbjct: 64 ENFSVLLYFLLVLKELLMGFLLGLLVNLFISAFSYAAEIISYFMGFTIVNLFDPTFG-QI 122
Query: 122 TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMI 181
+ L+ ++ L ++ + V +L ++ +P+G+ +IF + L F +
Sbjct: 123 SVLDRFFILLFYLLFFITGAYQIVLGSLFMTFKIMPVGKLYINTDIFPHLLEKLPILFYL 182
Query: 182 MLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L+++ PF+ ++ N+++ L+N+L+PQI ++ + P I +G L + +I+Y
Sbjct: 183 ALKIAFPFVLILLIVNVALALINRLIPQINVFIVGLPLQIFVGLASLAIGTSLIIYF 239
>gi|330957486|gb|EGH57746.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 264
Score = 84.9 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 89/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ VR +++ P + ++ + N
Sbjct: 10 QFMLGMGLAMARLAPCMVLVPAFCFKYLKGTVRYAVVAVMAMIPAPAITRALESLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L N F+ L T M+
Sbjct: 129 LFQETLIMLVILTGGLSLITQVIWDSYNVWPPTAWLPGMNAGGLDVFLEQLNQTMQHMML 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSVLAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|71736985|ref|YP_274733.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
1448A]
gi|257487954|ref|ZP_05641995.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|71557538|gb|AAZ36749.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320328892|gb|EFW84891.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330882957|gb|EGH17106.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330985218|gb|EGH83321.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331008643|gb|EGH88699.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 272
Score = 84.9 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 92/228 (40%), Gaps = 2/228 (0%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P + + +R C A+A S+ ++ ++ + + + L++ EL +
Sbjct: 28 MGVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLI 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + GLL + + G +I G ++ + + + +L+ ++ + ++
Sbjct: 88 GLLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLITLFFMS 147
Query: 140 DFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ SY P+ + L +S + +L I + + +P L ++ +
Sbjct: 148 GGFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLIAMLITD 207
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + L+++ P + I+ +S P ++ + + I ++
Sbjct: 208 LMLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIDQLAQ 255
>gi|56404018|ref|NP_858288.2| Spa29, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|74314953|ref|YP_313371.1| Spa29 [Shigella sonnei Ss046]
gi|82524598|ref|YP_406193.1| Spa29 [Shigella dysenteriae Sd197]
gi|60416402|sp|P0A1M7|SPAR_SHISO RecName: Full=Surface presentation of antigens protein spaR;
AltName: Full=Spa29 protein
gi|303895|dbj|BAA02831.1| spa29 [Shigella flexneri]
gi|915196|dbj|BAA09164.1| ORF24 [Shigella sonnei]
gi|32307048|gb|AAP79018.1| Spa29 [Shigella flexneri]
gi|56383096|gb|AAL72306.2| Spa29, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|73858430|gb|AAZ91136.1| Spa29 [Shigella sonnei Ss046]
gi|81243996|gb|ABB64705.1| Spa29 [Shigella dysenteriae Sd197]
gi|281603910|gb|ADA76893.1| Spa29, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2002017]
gi|320182866|gb|EFW57741.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
flexneri CDC 796-83]
gi|333008533|gb|EGK28002.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
flexneri K-218]
gi|333017442|gb|EGK36758.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
flexneri K-227]
gi|333020361|gb|EGK39625.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
flexneri K-304]
Length = 256
Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 81/230 (35%), Gaps = 5/230 (2%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
+ R+ LP L+ I +R+ + + + L+
Sbjct: 20 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVA---SGLITSGKVDIGSSVFEHVYFLMF 76
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
E+ +G + + + GS+I G L +S+ ++ + + L + +
Sbjct: 77 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 136
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ++ SY P+ + +F S+ + L + L+SP + +
Sbjct: 137 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--VSNILTFLTLLASQAVILASPVMIVLL 194
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ + +G+L++ PQ+ + +S L + + I + FL
Sbjct: 195 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 244
>gi|60415917|sp|P0A1M6|SPAR_SHIFL RecName: Full=Surface presentation of antigens protein spaR;
AltName: Full=Spa29 protein
gi|12329099|emb|CAC05830.1| Spa29, component of the Mxi-Spa secretion machinery [Shigella
flexneri]
Length = 256
Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 81/230 (35%), Gaps = 5/230 (2%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
+ R+ LP L+ I +R+ + + + L+
Sbjct: 20 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVA---SGLITSGKVDIGSSVFEHVYFLMF 76
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
E+ +G + + + GS+I G L +S+ ++ + + L + +
Sbjct: 77 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 136
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ++ SY P+ + +F S+ + L + L+SP + +
Sbjct: 137 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--ISNILTFLTLLASQAVILASPVMIVLL 194
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ + +G+L++ PQ+ + +S L + + I + FL
Sbjct: 195 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 244
>gi|195953032|ref|YP_002121322.1| type III secretion system inner membrane R protein
[Hydrogenobaculum sp. Y04AAS1]
gi|195932644|gb|ACG57344.1| type III secretion system inner membrane R protein
[Hydrogenobaculum sp. Y04AAS1]
Length = 258
Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/240 (20%), Positives = 102/240 (42%), Gaps = 5/240 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ LI R+ S + L P +P ++ F +AFS+ L ++ + +
Sbjct: 9 YLITFLLITLRISSIVFLAPIFGD--LPNSFKIFFVIAFSVSLY--YYNPVKPVYTDSFI 64
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + + E LG + L++R G +S+++GL+ T + T L +
Sbjct: 65 ILTLMALKEFSLGFIISLILRFLVDIFFVFGEFVSSSLGLSNATILNPLMG-NSTILGTY 123
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ +++ L +S +IP+G + +N+ +F +L+
Sbjct: 124 FSYFFMGLFAASSGFEYIYFILSESLKSIPLGVFDLYNMRPEFILNIFYKSFYTAFQLAL 183
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + +V NI + +N+L+PQI ++ + P +G +FL L ++ F + F
Sbjct: 184 PMIAIGLVMNIILAAINRLIPQINVFMVGMPLQTLIGMIFLLLIFPLLGILMHQIFEHYF 243
>gi|330812428|ref|YP_004356890.1| type III secretion protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|312597803|gb|ADQ89918.1| RscT [Pseudomonas fluorescens]
gi|327380536|gb|AEA71886.1| putative type III secretion protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 265
Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 3/238 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGSDTTPLGLL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLRL 185
+ +L L + + SY + F F+ +L FM M+
Sbjct: 131 FKEMTILLLVTTLGIGTLTQVIWDSYLVWSPTVWFPLPGADGFGVFLGLLGEMFMHMMLY 190
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++PF+ ++ S+ LL+ PQ+ ++ ++ P +G FL + + +
Sbjct: 191 AAPFIGLLLLVEFSLALLSLYSPQLQVFVLAMPAKSLIGLGFLLFYLPTLWDAMTGRL 248
>gi|16082734|ref|NP_395180.1| needle complex export protein [Yersinia pestis CO92]
gi|31795275|ref|NP_857736.1| needle complex export protein [Yersinia pestis KIM]
gi|31795477|ref|NP_857931.1| needle complex export protein [Yersinia pestis KIM]
gi|45478538|ref|NP_995365.1| putative type III secretion protein YscT [Yersinia pestis biovar
Microtus str. 91001]
gi|51593915|ref|YP_068482.1| yscT; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108793658|ref|YP_636808.1| type III secretion protein [Yersinia pestis Antiqua]
gi|145597136|ref|YP_001154600.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|149192693|ref|YP_001293925.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|162417741|ref|YP_001604478.1| type III secretion apparatus protein YscT [Yersinia pestis Angola]
gi|165927786|ref|ZP_02223618.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165940084|ref|ZP_02228618.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011765|ref|ZP_02232663.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214462|ref|ZP_02240497.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401935|ref|ZP_02307421.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422390|ref|ZP_02314143.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422473|ref|ZP_02314226.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422880|ref|ZP_02314633.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426861|ref|ZP_02318614.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186897580|ref|YP_001874691.1| type III secretion protein SpaR/YscT/HrcT [Yersinia
pseudotuberculosis PB1/+]
gi|229896862|ref|ZP_04512022.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|229900217|ref|ZP_04515353.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|270491103|ref|ZP_06208175.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis KIM D27]
gi|294496840|ref|YP_003560537.1| needle complex export protein [Yersinia pestis Z176003]
gi|322836572|ref|YP_004210068.1| type III secretion apparatus protein YscT [Yersinia pestis Java 9]
gi|57015238|sp|P69984|YSCT_YERPE RecName: Full=Yop proteins translocation protein T
gi|57015239|sp|P69985|YSCT_YERPS RecName: Full=Yop proteins translocation protein T
gi|475125|gb|AAA27680.1| yscT [Yersinia pseudotuberculosis]
gi|2996235|gb|AAC62558.1| Yop proteins translocation protein T homolog [Yersinia pestis KIM
10]
gi|3822065|gb|AAC69785.1| type III secretion protein [Yersinia pestis KIM 10]
gi|5832466|emb|CAB54923.1| putative type III secretion protein [Yersinia pestis CO92]
gi|45357160|gb|AAS58556.1| putative type III secretion protein YscT [Yersinia pestis biovar
Microtus str. 91001]
gi|51591612|emb|CAF25416.1| yscT; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108782205|gb|ABG16260.1| type III secretion protein [Yersinia pestis Antiqua]
gi|145212904|gb|ABP42310.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|148872351|gb|ABR14841.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|162354761|gb|ABX88708.1| type III secretion apparatus protein YscT [Yersinia pestis Angola]
gi|165911994|gb|EDR30637.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920222|gb|EDR37523.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989372|gb|EDR41673.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204355|gb|EDR48835.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958170|gb|EDR55191.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958627|gb|EDR55648.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958710|gb|EDR55731.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048663|gb|EDR60071.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054160|gb|EDR63987.1| type III secretion apparatus protein YscT [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186700606|gb|ACC91234.1| type III secretion protein SpaR/YscT/HrcT [Yersinia
pseudotuberculosis PB1/+]
gi|229686737|gb|EEO78817.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229700133|gb|EEO88172.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|262363851|gb|ACY60571.1| needle complex export protein [Yersinia pestis D106004]
gi|262364008|gb|ACY64345.1| needle complex export protein [Yersinia pestis D182038]
gi|270334846|gb|EFA45625.1| type III secretion apparatus protein SpaR/YscT/HrcT [Yersinia
pestis KIM D27]
gi|294352428|gb|ADE66485.1| needle complex export protein [Yersinia pestis Z176003]
gi|317374478|gb|ADV16653.1| type III secretion inner membrane protein [Yersinia pestis]
gi|321161346|gb|ADW67052.1| type III secretion apparatus protein YscT [Yersinia pestis Java 9]
Length = 261
Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 5/228 (2%)
Query: 20 GSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
+C ++LP LS + + +R + ++ + P + + ++ V+ L+ E+
Sbjct: 21 MACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIE--VDAFTLMLLIGKEII 78
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
LG + G + + L+ G ++ G + + + +P L+ + +
Sbjct: 79 LGLLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFS 138
Query: 139 IDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
+ AL SY P+ F N +I L++P L +
Sbjct: 139 GGAFLSLLSALFHSYVNWPVASFFPAVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLA 198
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ L+++ P + ++ ++ P + SL L + ++ S + L
Sbjct: 199 EFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAML 246
>gi|182412231|ref|YP_001817297.1| type III secretion system inner membrane R protein [Opitutus terrae
PB90-1]
gi|177839445|gb|ACB73697.1| type III secretion system inner membrane R protein [Opitutus terrae
PB90-1]
Length = 249
Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 99/240 (41%), Gaps = 4/240 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ ++ R I+ LP ++ IP+ RL + + +L + ++
Sbjct: 4 GFLVTWMMVFLRTLGVILQLPLVAGRPIPVMARLGICVCIASLLAGVVPES---SVPATL 60
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
E+ +G G ++R+ ++ G ++S+ IG+ + MG+ + E + +
Sbjct: 61 WGLLAATAGEILVGLALGFMVRLAFAAVEMAGRILSSEIGITMGGGMGVPEPATEP-MTA 119
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
LI ++ + H + L +S+ P GQ + + +N + +R++
Sbjct: 120 LISTFAVVLFFAFGGHLMMLSGLARSFVLAPAGQPMLAPSASDLLINATSHLIEVGVRIA 179
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+PF+ + ++ +L +++P++ ++ +S + G L +I F
Sbjct: 180 APFIAMNFLVLLTFSVLGRVLPKMNVFIVSFSMRLIAGFTLLASGGTLIARYLYLEFDDT 239
>gi|225619292|ref|YP_002720518.1| flagellar biosynthetic protein fliR [Brachyspira hyodysenteriae
WA1]
gi|225214111|gb|ACN82845.1| flagellar biosynthetic protein fliR [Brachyspira hyodysenteriae
WA1]
Length = 253
Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/238 (18%), Positives = 94/238 (39%), Gaps = 8/238 (3%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75
+ R + +M+ P S + IP +++ A + + P + +++Q Y ++
Sbjct: 1 MVRFVAILMVAPLFSSNVIPNTIKMALAFIATAAIFPLV-ANVNVQAAPTFVEYFLTLVN 59
Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135
E +G + G L+ + Q + +G + ++ + L L ++ +L
Sbjct: 60 EALIGILIGFLMSIIFAAYQVMANFFEIQMGFGISETVDPISQVTVPVLGQLQSLVVILL 119
Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQ-------ELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
ID V L S+ +PI +F + + + + F + L L+ P
Sbjct: 120 FIAIDGPSWVIRTLFYSFKAMPILSEASKAVFTSSFNGVIDRMIYYMSSLFSVALSLALP 179
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+ + ++S+GLL K PQ+ I + P I +G + I ++V F
Sbjct: 180 IMLTLFLLSLSLGLLAKAAPQMNILMLGFPMQIAVGVAAYYILIPVLVSNFMKVLETT 237
>gi|271500419|ref|YP_003333444.1| type III secretion protein SpaR/YscT/HrcT [Dickeya dadantii Ech586]
gi|270343974|gb|ACZ76739.1| type III secretion protein SpaR/YscT/HrcT [Dickeya dadantii Ech586]
Length = 267
Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 3/230 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +L L V R+ C+ L+P S S I +R A+A ++V + + L +
Sbjct: 13 FIYALTLGVARLYPCLFLVPLFSFSIIKGMLRNAVALAIALVPAGAIQQHM-LTTTITWP 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ EL +G + G+++ + + G++ G + + TPL +
Sbjct: 72 MLPALLLKELIIGVLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDATPLGHM 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIMLRL 185
+ + L L + L SY P L + F +++ +L TF M+
Sbjct: 132 MKELFTLLLVITIGFSGFTQLLWDSYQLWPALDFLPPLSELGFHTYLGLLNDTFQHMIVY 191
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEII 235
+ P + ++ SI +L+ PQ+ +Y +S P G F L + ++
Sbjct: 192 AGPLVALLLLLEFSIAILSLYSPQLQVYVLSAPAKCLAGMAFFVLYMPVL 241
>gi|167566196|ref|ZP_02359112.1| type III secretion system protein BsaY [Burkholderia oklahomensis
EO147]
Length = 250
Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/227 (16%), Positives = 71/227 (31%), Gaps = 10/227 (4%)
Query: 21 SCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
LLP L+ I V+ A + L P + + E+
Sbjct: 25 PVFYLLPFLNDRTIVNGVVKNTIVFAVILGLWPSFAHP-------QGGALFGVALTEVAA 77
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G V G+ + + G +I G + S+ + + + + + A
Sbjct: 78 GLVLGVALSLPFWVATVVGELIDNQRGATISDSIDPATGVEASAFAPFVSLFYAAAFLQQ 137
Query: 140 DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199
+ AL SY T+P G + +L L L++P L + +
Sbjct: 138 GGMLTIAGALESSYATVPTGALFDVD--LLRVGALLTDLVAHGLALAAPVLIVMFLTDAL 195
Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+GL ++ PQ+ + +S + L + L+
Sbjct: 196 LGLFSRFCPQVNAFSLSLTVKSLVAFAVFHLYFVYAAPHELTALLHA 242
>gi|12082759|gb|AAG48606.1|AF306650_3 SpaR [Sodalis glossinidius]
Length = 263
Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/237 (16%), Positives = 93/237 (39%), Gaps = 5/237 (2%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++L ++ R+ LLP L+ +++ + VR L P+ + ++
Sbjct: 11 EWLITLAVVSARITPAFFLLPFLAPAWLSLTVRTPVIFFIGAALWPY---SFGAMASLDG 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A + +++ E+ +G + +L+ + + G++I G L ++ + + L
Sbjct: 68 ARIADILLREVAIGLLLAILLALPFWVMHGLGALIDYQRGALLSSAYDPISGVDTSELAK 127
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ + + SY + + +LQT +L LS
Sbjct: 128 FFNLFFAAVFLQGGGLTLLLEVFLGSYQLCDPLE--PSLPSLAKVTTLLQTMATRILILS 185
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
SP L ++ IS+GLL++ PQ+ + I+ G+ + + ++ + +
Sbjct: 186 SPVLVVLLLIEISLGLLSRFAPQMNAFAIALTLKSGVTFFIILIYFAPLLPEIFRQY 242
>gi|13449102|ref|NP_085318.1| Type III secretion protein [Shigella flexneri 5a]
gi|13310650|gb|AAK18474.1|AF348706_163 Type III secretion protein [Shigella flexneri 5a]
Length = 257
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 81/230 (35%), Gaps = 5/230 (2%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
+ R+ LP L+ I +R+ + + + L+
Sbjct: 21 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVA---SGLITSGKVDIGSSVFEHVYFLMF 77
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
E+ +G + + + GS+I G L +S+ ++ + + L + +
Sbjct: 78 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 137
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ++ SY P+ + +F S+ + L + L+SP + +
Sbjct: 138 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--ISNILTFLTLLASQAVILASPVMIVLL 195
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ + +G+L++ PQ+ + +S L + + I + FL
Sbjct: 196 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 245
>gi|167588154|ref|ZP_02380542.1| SctT [Burkholderia ubonensis Bu]
Length = 268
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 5/241 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L L R+ + +LP + + + +R A + + + L ++ A
Sbjct: 19 FIVLLALSSERLLVIMTILPATADNVMKGPMRSGAAAVWCLFVA---GGQQALMPQLHGA 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ E +G V G+ + G+ + G N S + + +L
Sbjct: 76 FLMITCAKEAVIGLVLGIAASTVFWAAEAIGTYVDDLAGFNNVQMQNPSSGTQTSLMATL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTFMIML-RL 185
G + + + W++ + AL +SY P+G + F M M+ R+
Sbjct: 136 FGQLTIASFWMLGGMTFLLGALYESYAWWPLGSFDPVPAPLLELFAQARIDMLMNMVARI 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++P + ++ ++ + +++ ++ + +S P + L + + V +
Sbjct: 196 ATPMMAMLLLVDLGLAFVSRSAQKLDLMSVSQPLKGAIAVLIVAVLAGSFVSEMRGQISL 255
Query: 246 G 246
Sbjct: 256 A 256
>gi|292487273|ref|YP_003530145.1| surface presentation of antigens protein spaR [Erwinia amylovora
CFBP1430]
gi|292900355|ref|YP_003539724.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291200203|emb|CBJ47331.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552692|emb|CBA19737.1| Surface presentation of antigens protein spaR [Erwinia amylovora
CFBP1430]
Length = 254
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 93/250 (37%), Gaps = 8/250 (3%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTID 59
+ ++ + ++ + R+ LLP L + ++ I L P + ++
Sbjct: 6 LYLNFQHGVLIFTMAYARLAIVFYLLPVLGERVLSNLIIKNTIIALIIIGLWPCYAEALN 65
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+ + L++ E +G + + + V + G ++ G + S+ + +
Sbjct: 66 PEQ-----GWLILLLKECVIGLILAMTLCVPFWIVISLGEILDNQRGATISDSIDPVNGV 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+ L+ + + + LV+SY P G L + + + +L
Sbjct: 121 QSSTLSGFLNFAFGAIFFASGGMSSLIELLVQSYHVFPRGSNLVDFH-WQAVGGLLMVLA 179
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGS-LFLCLSIEIIVYQ 238
+ LS+P + +V I +G+ + PQ+ + +S + +FL + I +
Sbjct: 180 KGSIMLSAPVMIVMMVAEILLGVFARFCPQLNPFSLSLAIKSFIAFTVFLFYGFQAISQK 239
Query: 239 FSHSFLYGFF 248
H F FF
Sbjct: 240 PLHLFSIAFF 249
>gi|330819411|ref|YP_004348273.1| Type III secretion protein SpaR/YscT/HrcT [Burkholderia gladioli
BSR3]
gi|327371406|gb|AEA62761.1| Type III secretion protein SpaR/YscT/HrcT [Burkholderia gladioli
BSR3]
Length = 294
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 4/244 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ + + R+ + + P + + VR + FS + + ++
Sbjct: 17 GYLTLIGVSSVRLFVIMTIFPPSADGVLQGPVRNAIVILFSTFVA--YGQPLAFGEQLHG 74
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A +L + E +G V G + G I G N + TP +
Sbjct: 75 AALVELGLREGMIGLVLGFAASSVFWVAECAGYYIDDLTGYNSAQVQNPLRNEQATPTAT 134
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLR 184
L+ + +A W + + L +SY P+ + + + T + +
Sbjct: 135 LLQQVATVAFWSLGGMSFLLGTLYESYRWWPLTAHSVDVSSVLEAFALKETDTLMQQVAK 194
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
L++P + ++ + + K ++ + +S P + L L L + + V Q
Sbjct: 195 LAAPAVMILLLIDFAFAFAAKSASKLELMGLSQPVKGAVAVLLLALFVGVFVDQVRDQLT 254
Query: 245 YGFF 248
F
Sbjct: 255 LSAF 258
>gi|39545583|gb|AAR27890.1| AscT [Aeromonas hydrophila]
Length = 262
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 98/236 (41%), Gaps = 5/236 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ M++ L++ R SC ++LP LS + +R + ++ P + +T+ +
Sbjct: 7 QGQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVICSLALFAYPMVANTLPPT--I 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ LV E+ LG + G + + ++ +G +I G + + S + +P
Sbjct: 65 TALDLALLVAKEVLLGLLIGFVAAIPFWAIEASGFLIDNQRGAAMASIFNPSLASQTSPT 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF--GNIFSSFVNMLQTTFMIM 182
L+ + + + AL +SY + P+ S F + ++
Sbjct: 125 GLLLTQTLITLFFASGAFLALLSALFQSYASWPVAHFFPTIGDRWVSFFYSQFSQMLLLC 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L++P L + + L+++ P + ++ ++ P + SL L + I++++
Sbjct: 185 ALLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAVASLLLVIYIKLMMDH 240
>gi|237800779|ref|ZP_04589240.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023637|gb|EGI03694.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 271
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 91/228 (39%), Gaps = 2/228 (0%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P + + +R C A+A S+ ++ ++ + + + L++ EL +
Sbjct: 28 MGVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLI 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + GLL + + G +I G ++ + + + +L+ ++ + ++
Sbjct: 88 GLLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVMLITLFFMS 147
Query: 140 DFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ SY P+ + L S + +L I + + +P L ++ +
Sbjct: 148 GGFILMVDGYYHSYQLWPVTEFTPLFSSAALMSILAILDQVMRIGVLMVAPLLIAMLITD 207
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + L+++ P + I+ +S P S+ + + I ++
Sbjct: 208 LMLAYLSRMAPSLHIFDLSLPVKNLFFSVLMVVYIGFLIPVMIDQLAQ 255
>gi|330950826|gb|EGH51086.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae Cit
7]
Length = 264
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 89/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N
Sbjct: 10 QFMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAIPRALESLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L N F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWLPGMNAGGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLMEL 242
>gi|89069812|ref|ZP_01157147.1| flagellar biosynthetic protein FliR [Oceanicola granulosus
HTCC2516]
gi|89044613|gb|EAR50729.1| flagellar biosynthetic protein FliR [Oceanicola granulosus
HTCC2516]
Length = 254
Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/242 (19%), Positives = 106/242 (43%), Gaps = 8/242 (3%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ ++ + + RV + + P +P+++RL A+A ++V+LP +
Sbjct: 13 QEVLWAGVAVFLRVAAMAGVFPVFGEQSVPLRLRLAIALALTLVVLPAVP-------LAG 65
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
A ++ E +G GL +R+ + LQ G++ + + L+ + +
Sbjct: 66 GAPGLAALVGEPLVGLFFGLFLRLIVMALQIAGTIAAQSTSLSQIFGAS-AGIEPLPAMG 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
+ + GL ++D H + ++ +Y P+ + V + F L
Sbjct: 125 HFLVVAGLALAALLDLHVRAAAYILLTYELAPVSTVPAAALVAEVGVAEVGRAFRFGFAL 184
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
++PFL +++NI++G++N+ +PQ+ + F+ P + G L +S I++ +S L
Sbjct: 185 AAPFLVASLLYNITLGVINRAMPQLMVAFVGAPAITAGGLALLAISAPIMLAAWSDRLLD 244
Query: 246 GF 247
Sbjct: 245 FL 246
>gi|320324519|gb|EFW80596.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
Length = 272
Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 91/228 (39%), Gaps = 2/228 (0%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P + + +R C A+A S+ ++ ++ + + + L++ EL +
Sbjct: 28 MGVVIITPAFNRLGLTGMIRGCVAVAISVPMILPVFSAFTSMPEHSGFFLAGLMIKELLI 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + GLL + + G +I ++ + + + +L+ ++ + ++
Sbjct: 88 GLLIGLLFGIPFWAAEVAGELIDLQRDSTMEQLVDPLGQGEASVMATLLTVMLITLFFMS 147
Query: 140 DFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ SY P+ + L +S + +L I + + +P L ++ +
Sbjct: 148 GGFILMVDGYYHSYQLWPVTEFTPLFSSAALTSILAILDQVMRIGVLMVAPLLIAMLITD 207
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLY 245
+ + L+++ P + I+ +S P ++ + + I ++
Sbjct: 208 LMLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIDQLAQ 255
>gi|296274005|ref|YP_003656636.1| type III secretion system inner membrane R protein [Arcobacter
nitrofigilis DSM 7299]
gi|296098179|gb|ADG94129.1| type III secretion system inner membrane R protein [Arcobacter
nitrofigilis DSM 7299]
Length = 249
Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 100/248 (40%), Gaps = 5/248 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+++ E +++ L+ R+ + + +P + +++R + ++ L P L +
Sbjct: 5 LSLLNESTVINFLLLFARILAFMAFMPIFGHKVVNVRMRAALSFYVTLFLFPML----QI 60
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
++ V + + ++ E LG + +L+ + ++ G + A L++ + +
Sbjct: 61 ESQVTSSGFLIAILSEATLGLIASMLVNIIFNAVKMIGEFVGYATALSMASFFDPASGTN 120
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQE-LNFGNIFSSFVNMLQTTF 179
E L L+ I L + + F L KS+ + +G + + ++ + F
Sbjct: 121 EGILARLMFYISLAVFFESGMYEMTFSILAKSFSIVHLGAFDIYSYDGIKLLIDEINRMF 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P F V +I K +P + I+ L +F+ + +E+ F
Sbjct: 181 AFTFAFAFPLFFIGFVIDIYYAYGTKSMPAFSPFVITFQLKFALIMIFIMMGMEVFTEAF 240
Query: 240 SHSFLYGF 247
++ F+ F
Sbjct: 241 TNYFITKF 248
>gi|152990383|ref|YP_001356105.1| flagellar biosynthetic protein FliR [Nitratiruptor sp. SB155-2]
gi|151422244|dbj|BAF69748.1| flagellar biosynthetic protein FliR [Nitratiruptor sp. SB155-2]
Length = 255
Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 108/226 (47%), Gaps = 2/226 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
L+ RVG+ + LP + +YIP +++ +AFS L+ L D V ++ +
Sbjct: 12 ILVFFRVGAIFLSLPVFNANYIPSNIKILLILAFSFYLIQNLTIYYDFSK-VTLMQFTLM 70
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
++ E+ LG GLL+ ++ + +IS +G + + + L+ L ++
Sbjct: 71 ILKEILLGFSIGLLVSIFVAAFTYAAEIISYFMGFTIVNVFDPTYG-QVSILSRLFIMLF 129
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
+ +V D +H +++KS+ IP+ Q + F+ F + +LS PF
Sbjct: 130 FILFFVTDAYHIFIISIIKSFSYIPLVQTSYPDSFFTYLFEKSSLIFTLSFQLSFPFALI 189
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+ N+++ L+N+L+PQI ++ + P I +G + L + ++V
Sbjct: 190 VYLINLALALVNRLIPQINVFIVGLPLQIFVGIVALMIGAGVLVSV 235
>gi|146305089|ref|YP_001185554.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas mendocina
ymp]
gi|145573290|gb|ABP82822.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas mendocina
ymp]
Length = 266
Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 97/234 (41%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+M+ L L V R+ C++L+P ++ +R +A +++ P + + + +
Sbjct: 10 ELMLGLGLGVARLLPCMLLVPAFCFKHLKGILRYGVVIAVAMIPAPSIGEALASEGASFG 69
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L+ E+ LG + G+L+ + G+++ + G + + TP+
Sbjct: 70 VVMGLLI-KEVMLGALLGVLLHMPFWMFASVGALLDSQRGALSGGQLNPALGPDVTPMGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L+ + ++ + + + + SY P L + ++ L T ML
Sbjct: 129 LLQEVLVMLVILFGGLPLITQVIWDSYLIWPPTVWLPILTEDGLGVLLSQLSRTLQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ ++ +++ Q+ ++ ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAMAIISLYAQQLNVFILAMPAKSIAGLAFLLIYLPTLLEL 242
>gi|330876192|gb|EGH10341.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
gi|330963710|gb|EGH63970.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 271
Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 91/226 (40%), Gaps = 2/226 (0%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P + + +R C A+A S+ ++ ++ + + + L++ EL +
Sbjct: 28 MGVVIITPAFNRLGLTGTIRGCVAVAISVPMILPVFSAFTSMPEHSVFFLAGLMIKELLI 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + GLL + + G +I G ++ + + + +L+ + + ++
Sbjct: 88 GLLIGLLFGIPFWAAEVAGELIDLQRGSTMEQLVDPLGQGEASVMATLLTVTLITLFFMS 147
Query: 140 DFHHQVFYALVKSYGTIPIGQE--LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ SY P+ + L G S + +L I + + +P L ++ +
Sbjct: 148 GGFILMVDGYYHSYQLWPVTEFTPLFSGAALMSILAILDQVMRIGVLMVAPLLIAMLITD 207
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+ + L+++ P + I+ +S P ++ + + I ++
Sbjct: 208 LMLAYLSRMAPSLHIFDLSLPVKNLFFAVLMVVYIGFLIPVMIEQL 253
>gi|289623685|ref|ZP_06456639.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647641|ref|ZP_06478984.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330871289|gb|EGH05998.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 264
Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 87/234 (37%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R ++V P + + + N
Sbjct: 10 QFMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLMIKEAVLGTLLGLLLYAPFWMCASVGALLDSQRGALSGGQLNPALGPDATPLGD 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|818893|gb|AAB05077.1| HrpX [Pseudomonas syringae pv. syringae]
gi|148562542|gb|ABQ88361.1| HrcT [Pseudomonas syringae pv. syringae]
Length = 264
Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 89/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N
Sbjct: 10 QFMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAITRALESLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L N F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWLPGMNAGGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|296103626|ref|YP_003613772.1| flagellar biosynthetic protein FliR [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058085|gb|ADF62823.1| flagellar biosynthetic protein FliR [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 186
Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 1/176 (0%)
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
++ ++ +G GL +++ ++ G +I +GL+ T ++ + ++
Sbjct: 1 MLAKQVIIGAAMGLTLQLLFAAVRMAGEIIGMQMGLSFATFFDPGAG-NSPVISRFLNLL 59
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L + H + L ++ T+PI F V F L L P +
Sbjct: 60 VTLLFLAFNGHLWLLALLADTFQTLPIDATPLHAGGFMYLVTHAGMIFSQGLMLGLPVIA 119
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ N +GLLN+L PQ+ I+ I P + G L L L E + F GF
Sbjct: 120 LLLCINFILGLLNRLTPQLSIFVIGFPLTLTFGMLALFLIAETLAPFFERLMATGF 175
>gi|66044457|ref|YP_234298.1| type III secretion protein HrcT [Pseudomonas syringae pv. syringae
B728a]
gi|289678001|ref|ZP_06498891.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
syringae FF5]
gi|63255164|gb|AAY36260.1| type III secretion protein HrcT [Pseudomonas syringae pv. syringae
B728a]
gi|330937037|gb|EGH41125.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330975862|gb|EGH75928.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 264
Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 89/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N
Sbjct: 10 QFMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAISKALESLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P + N F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWMPGMNAGGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|257487236|ref|ZP_05641277.1| type III secretion component protein HrcT [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|238577785|gb|ACR46696.1| HrcT [Pseudomonas syringae pv. tabaci]
gi|331009150|gb|EGH89206.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 264
Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 87/234 (37%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R ++V P + + + N
Sbjct: 10 QFMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNHTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|61743013|gb|AAX55233.1| EsaT [Edwardsiella tarda]
Length = 259
Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 95/244 (38%), Gaps = 1/244 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTID 59
M L + + R ++++P + + + +R A+ ++ LP L +
Sbjct: 1 MMAELNHWWPLLGIAMMRPLGIMLIMPLFNSAMLGGALIRNALALMAALPALPQLAALVL 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+Y L++ EL LG + G + L G +I T G ++
Sbjct: 61 PSPLQAPLHYGGLLLGELVLGLLLGFSAALPLWALNMAGFIIDTMRGASIAVLFNPLLGE 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTF 179
+P+ L + + V H + AL SYG +P G +++ +
Sbjct: 121 QSSPMGVLFSQLVGVLFIVGGGFHALLAALFSSYGDLPPGSMAVGRGFIPLLMHLWHLLY 180
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ L S P + ++ ++++G +N+ V Q+ ++ +S P + L L +S+ +
Sbjct: 181 TLALSFSMPAMVMMVLVDLALGFINRSVQQLNVFTLSMPIKSAMVLLMLIISLPFALDGV 240
Query: 240 SHSF 243
F
Sbjct: 241 QALF 244
>gi|54124950|gb|AAV30218.1| AscT [Aeromonas hydrophila]
Length = 262
Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 98/236 (41%), Gaps = 5/236 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
+ M++ L++ R SC ++LP LS + +R + ++ P + DT+ +
Sbjct: 7 QGQMLAYTLLLPRFISCFVMLPVLSKQMLGGAMIRNGVVCSLALFAYPMVADTLPPT--I 64
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
+ + LV E+ LG + G + + ++ +G ++ G + + S + +P
Sbjct: 65 DALDLALLVAKEVLLGLLIGFVAAIPFWAVEASGFLVDNQRGAAMASLFNPSLASQTSPT 124
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFS--SFVNMLQTTFMIM 182
L+ + + + AL +SY + P+ + F + +I
Sbjct: 125 GLLLTQTLITLFFSGGAFLALLSALFQSYASWPVTRFFPAIGDLWVSFFYSQFSQMLLIC 184
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L++P L + + L+++ P + ++ ++ P + S L + I++++
Sbjct: 185 ALLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPVKSAVASPLLVIYIKLMMDH 240
>gi|330984962|gb|EGH83065.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 264
Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R +++ P + + + N
Sbjct: 10 QFMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMIPAPAISRALGSLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|330969106|gb|EGH69172.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 264
Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 89/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N
Sbjct: 10 QFMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAISKALESLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P + N F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWMPGMNASGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|298485947|ref|ZP_07004022.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298159533|gb|EFI00579.1| type III secretion system inner membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 264
Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 87/234 (37%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R ++V P + + + N
Sbjct: 10 QFMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGD 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|187734285|ref|YP_001883218.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
boydii CDC 3083-94]
gi|187426781|gb|ACD06056.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
boydii CDC 3083-94]
Length = 245
Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 81/230 (35%), Gaps = 5/230 (2%)
Query: 15 IVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVM 74
+ R+ LP L+ I +R+ + + + L+
Sbjct: 9 VFFRLAPLFFFLPFLNNGIISPSIRIPVIFLVA---SGLITSGKVDIGSSVFEHVYFLMF 65
Query: 75 VELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLL 134
E+ +G + + + GS+I G L +S+ ++ + + L + +
Sbjct: 66 KEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFSAV 125
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ ++ SY P+ + +F S+ + L + L+SP + +
Sbjct: 126 VFLYSGGMVFILESIQLSYNICPLFSQCSFR--VSNILTFLTLLASQAVILASPVMIVLL 183
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+ + +G+L++ PQ+ + +S L + + I + FL
Sbjct: 184 LSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 233
>gi|310816837|ref|YP_003964801.1| flagellar biosynthetic protein FliR [Ketogulonicigenium vulgare
Y25]
gi|308755572|gb|ADO43501.1| flagellar biosynthetic protein FliR [Ketogulonicigenium vulgare
Y25]
Length = 259
Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 109/238 (45%), Gaps = 2/238 (0%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ FL+ R G+ LLP +P+++RL A+A ++ + + V +
Sbjct: 16 FAAFLVFLRAGAFCALLPAFGEQTLPLRLRLSVAIAMTM-ITLPAVLPLMPPPPVQISQM 74
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L++ E+ G + GL +R+ L+ G++ + ++G+ G + + + +
Sbjct: 75 GALLLTEIGAGLIFGLSLRLLVWALETAGAIAAQSVGVAQIFGPG-MTAEPSSAFSQIFI 133
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ G + Q ++ SY I G + + + +F + +RL++PF
Sbjct: 134 MAGFALACAMGLPVQAVAMMIGSYNVISPGIFPAPDMLAQAILPGFSESFSLAVRLAAPF 193
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+++N+++G +N+ +PQ+ + F+ P L G+G + L L+ +++ + + F
Sbjct: 194 FIAGLLYNLTLGFVNRAMPQMMVTFVGAPALTGIGIVLLLLASPVLLGIWVRALGAAF 251
>gi|304415256|ref|ZP_07395953.1| putative type III secretion system protein [Candidatus Regiella
insecticola LSR1]
gi|304282882|gb|EFL91348.1| putative type III secretion system protein [Candidatus Regiella
insecticola LSR1]
Length = 211
Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/192 (13%), Positives = 63/192 (32%), Gaps = 2/192 (1%)
Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL 107
+V + + Y L+ E+ +G + +I L GS++ G
Sbjct: 2 LVAFALWPHAPTERPPFDALVYLGLISREVTIGLLLASVIAWPFWVLHAVGSIVDNQRGA 61
Query: 108 NLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167
+ +S+ + + L + + + + SY
Sbjct: 62 TISSSIDPISGVDTSELANFFNLFAAVIFLQGGGMTLLLEVYDASYRFCDP--LTECSPA 119
Query: 168 FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLF 227
+++L + L L+SP + ++ +GLL++ PQ+ + I+ + +
Sbjct: 120 LLPLLSILTQLMVKALVLASPVIAALLMTEAILGLLSRFAPQLNAFSIALTIKGTVAFVI 179
Query: 228 LCLSIEIIVYQF 239
+ + +
Sbjct: 180 IMIYFSARLPDI 191
>gi|315929207|gb|EFV08428.1| flagellar biosynthetic protein FliR [Campylobacter jejuni subsp.
jejuni 305]
Length = 176
Score = 81.9 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 71/167 (42%)
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140
+ GL++++ + G I+ +G + + + S + ++ ++ L+ D
Sbjct: 1 MIAGLMLQIIFAIIMMAGEQIAFTMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFD 60
Query: 141 FHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200
HH + L S G I +G N+ + F+I +S P L ++ ++
Sbjct: 61 GHHLMLLFLSHSLGYISLGGFYPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIF 120
Query: 201 GLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
GLL K +PQ + I P I LG + L + +++ F + L F
Sbjct: 121 GLLMKTMPQFNLLVIGYPIKIALGFVVLIAILLVMMQYFKNLILELF 167
>gi|71736218|ref|YP_273542.1| type III secretion component protein HrcT [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|3282783|gb|AAC25071.1| HrcT [Pseudomonas syringae pv. phaseolicola]
gi|42562004|gb|AAS20446.1| HrcT [Pseudomonas syringae pv. phaseolicola]
gi|71556771|gb|AAZ35982.1| type III secretion component protein HrcT [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320322957|gb|EFW79047.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329920|gb|EFW85908.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330874620|gb|EGH08769.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 264
Score = 81.9 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 87/234 (37%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R ++V P + + + N
Sbjct: 10 QFMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|313610164|gb|EFR85467.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL
F2-208]
Length = 210
Score = 81.9 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/193 (14%), Positives = 65/193 (33%)
Query: 54 LWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM 113
+ +D+ V E+ G L+ + + + G +I +G + +
Sbjct: 4 VATWVDVSGITTLPDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLI 63
Query: 114 GISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN 173
S + +++ ++ + + Y L+KS+ L +
Sbjct: 64 DPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGFIDLLLG 123
Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233
L + ++ P + + NI + ++K PQI I+ + I G L ++
Sbjct: 124 TLGFALASAVSIALPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVP 183
Query: 234 IIVYQFSHSFLYG 246
I+ F +
Sbjct: 184 ILSTVFKNLTDEM 196
>gi|110632474|ref|YP_672682.1| type III secretion protein SpaR/YscT/HrcT [Mesorhizobium sp. BNC1]
gi|110283458|gb|ABG61517.1| type III secretion protein SpaR/YscT/HrcT [Chelativorans sp. BNC1]
Length = 271
Score = 81.9 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 5/229 (2%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF---VNRAYYSKL 72
+ R+ + P S +P VR A S ++ L + + Y L
Sbjct: 26 MTRLSGFFAISPFFSRKSMPRIVRFGTMAAMSFPIVSSLAAEVGTEIARQGGALPSYPVL 85
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
++ EL LG G L+ + GL+ G ++ T G + S TP + +
Sbjct: 86 IVKELALGLFLGTLVWLPIRGLELAGVILDTQRGSTQAEDYDVVFSAQTTPTAIFLSQLF 145
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+ V +S P L FV + L L P
Sbjct: 146 AGFFFAAGGFLMVMTIFYQSIAIWPPMDLLPAFTRETLLLFVRFAGMVYFTALVLVLPIS 205
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
F ++ +I I L + P + + P + + L I ++ +
Sbjct: 206 GFMLLSDICIAFLARSAPSLNALTLGMPVKSAVLLVMLIFYIALLYPKL 254
>gi|115377838|ref|ZP_01465026.1| flagellar biosynthesis protein FliR, putative [Stigmatella
aurantiaca DW4/3-1]
gi|115365170|gb|EAU64217.1| flagellar biosynthesis protein FliR, putative [Stigmatella
aurantiaca DW4/3-1]
Length = 222
Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 40/212 (18%), Positives = 93/212 (43%), Gaps = 5/212 (2%)
Query: 40 LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGS 99
+ + S+VL P + D + + Y L++ E+F+G ++ + + G+
Sbjct: 1 MGVGVTLSLVLFPSVADRMGA-LPTSALPYIALLLKEVFIGVSLAFIVNIIFDAARVAGT 59
Query: 100 VISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG 159
++ T G N + +SL + ++ +D HH V AL S+ +P+
Sbjct: 60 LVDTMAGSNNAQLYVPQLGQQVSLFSSLKVQLSVVLFLTLDGHHIVISALADSFAIVPLD 119
Query: 160 QELNFGNIFSSFVNMLQTTF----MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFI 215
F +F ++ F I L L++P + + ++++G +N++ P + ++FI
Sbjct: 120 SFPKFSKGTWAFFEVISRAFANLLAISLSLAAPQMLSAFLTDLAMGAVNRVAPNLQVFFI 179
Query: 216 STPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + L L++ +++ +F F++
Sbjct: 180 AMAIKPMVSVLIAALALHMLIGRFQSEFVHML 211
>gi|115379105|ref|ZP_01466229.1| type III secretion inner membrane protein, putative [Stigmatella
aurantiaca DW4/3-1]
gi|115363888|gb|EAU62999.1| type III secretion inner membrane protein, putative [Stigmatella
aurantiaca DW4/3-1]
Length = 235
Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/199 (14%), Positives = 69/199 (34%), Gaps = 2/199 (1%)
Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81
L P L P V+L ++ ++ L + + + L + EL G
Sbjct: 1 MAFLCPLLGGQATPSPVKLSLVLSLALFLHLGAGVKVPVP-METLGEWGALALKELVYGT 59
Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDF 141
GLL + + G I G + + S+ E+ ++ + + +
Sbjct: 60 AVGLLAALPFDAARMGGRFIDLFRGASAEASL-PVAGSRESAAGDVLYQLLVALVVTGGL 118
Query: 142 HHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG 201
+V ++ +G +P+G + + + L + +P + + +G
Sbjct: 119 FPRVLSGSLRGFGVVPLGTAVPSEAATGQVFLLAGSALATGLAIGAPIAAASMAVDCWVG 178
Query: 202 LLNKLVPQIPIYFISTPYL 220
+ ++ PQ+ + + P
Sbjct: 179 MASRAAPQMNLQELGAPLR 197
>gi|190894061|ref|YP_001984355.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
gi|190699722|gb|ACE93805.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
Length = 269
Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 3/230 (1%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P S+ I +R A+ S + F + + L + + L M EL
Sbjct: 27 LGILLIFPIFSLFSIVGILRFGLAIGLSAPSVAFAYSVLAL-GDTSWFDLAALSMKELCF 85
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + G+ + + Q G + G N ++L PL SL+ I L+
Sbjct: 86 GALIGIGLGIPFWAAQAAGDMTDVYRGANAANLFDQINALETAPLGSLMMSIALVLFVSA 145
Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ KS+ P+ + + + + + F L++PF+
Sbjct: 146 GGIIDLVAIFYKSFEFWPLFKLMPAMPDDPLDMILGVFGRLFKAAGLLAAPFMIVTCALE 205
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+S+ + + Q P+ + L + I F ++ GF
Sbjct: 206 LSLAFVGRSSKQFPLNDSLPAIKNFAVVVILVIYTAFISSYFHDLWIDGF 255
>gi|85058549|ref|YP_454251.1| type III secretion apparatus SpaR [Sodalis glossinidius str.
'morsitans']
gi|84779069|dbj|BAE73846.1| type III secretion apparatus SpaR [Sodalis glossinidius str.
'morsitans']
Length = 259
Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 83/223 (37%), Gaps = 7/223 (3%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
M + L RVG ++LP L + + V+ I + P + +++
Sbjct: 15 MIIMLAYVRVGIVFLMLPLLGGRILSHLIVKNMVIFITLIGIWPDIRTIPNIEQ-----G 69
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ L+ E G + +++ + G VI G + S+ + L T ++S +
Sbjct: 70 WLVLIARECVTGLMLAMILSLPFWIASAIGEVIDNQRGATISDSIDPVNGLQSTTMSSFL 129
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ ALV+SY P G L G ++ ++ + L++P
Sbjct: 130 SFAFGAIFMAQGGMILLMNALVQSYRVFPSGSSLL-GAQWAVAGKLVHLLLENSVILAAP 188
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231
L ++ +++G+ ++ PQ+ + +S +
Sbjct: 189 TLITLMLSEMTLGVFSRYCPQLNPFSLSLSLKSFIAFTIFMFY 231
>gi|21492902|ref|NP_659977.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
gi|21467327|gb|AAM54990.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
gi|327192843|gb|EGE59769.1| type III secretion system translocation protein [Rhizobium etli
CNPAF512]
Length = 269
Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 3/230 (1%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P S+ I +R A+ S + F + + + + + L M EL
Sbjct: 27 LGILLIFPIFSLFSIVGILRFGLAIGLSAPSVAFAYSVLAI-GDTSWFDLAALSMKELCF 85
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + G+ + + Q G + G N ++L PL SL+ I L+
Sbjct: 86 GALIGMGLGIPFWAAQAAGDMTDVYRGANAANLFDQINALETAPLGSLMMSIALVIFVSA 145
Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ KS+ P+ + + + + + F L++PF+
Sbjct: 146 GGIIDLVAIFYKSFEFWPLFKLMPAMPDDPLDMILGVFGRLFKAAGLLAAPFMIVTCALE 205
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+S+ + + Q P+ + L + I F ++ GF
Sbjct: 206 LSLAFVGRSSKQFPLNDSLPAIKNFAVVVILVIYTAFISSYFHDLWIDGF 255
>gi|45504757|gb|AAS66848.1| YsaT [Sodalis glossinidius]
Length = 245
Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 83/223 (37%), Gaps = 7/223 (3%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
M + L RVG ++LP L + + V+ I + P + +++
Sbjct: 1 MIIMLAYVRVGIVFLMLPLLGGRILSHLIVKNMVIFITLIGIWPDIRTIPNIEQ-----G 55
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ L+ E G + +++ + G VI G + S+ + L T ++S +
Sbjct: 56 WLVLIARECVTGLMLAMILSLPFWIASAIGEVIDNQRGATISDSIDPVNGLQSTTMSSFL 115
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ ALV+SY P G L G ++ ++ + L++P
Sbjct: 116 SFAFGAIFMAQGGMILLMNALVQSYRVFPSGSSLL-GAQWAVAGKLVHLLLENSVILAAP 174
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231
L ++ +++G+ ++ PQ+ + +S +
Sbjct: 175 TLITLMLSEMTLGVFSRYCPQLNPFSLSLSLKSFIAFTIFMFY 217
>gi|320175461|gb|EFW50560.1| Flagellar biosynthesis protein FliR [Shigella dysenteriae CDC
74-1112]
Length = 233
Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/209 (21%), Positives = 90/209 (43%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98
++ A+A ++L V + L + ++ +G G ++ ++ G
Sbjct: 15 KVALALAAPLLLFVIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAMRTAG 74
Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158
+I +GL+ T + + L L ++ ++ LL + H + LV ++ T+PI
Sbjct: 75 EIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPI 134
Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218
G E N F + F+ L L+ P + + N+++GLLN++ PQ+ I+ I P
Sbjct: 135 GGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFP 194
Query: 219 YLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ +G + + +I H F F
Sbjct: 195 LTLTVGISLMAALMPLIAPFCEHLFSEMF 223
>gi|218674845|ref|ZP_03524514.1| type III secretion system translocation protein [Rhizobium etli
GR56]
Length = 269
Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 3/230 (1%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P S+ I +R A+ S + F + + + + + L M EL
Sbjct: 27 LGILLIFPIFSLFSIVGILRFGLAIGLSAPSVAFAYSVLAI-GDTSWFDLAALSMKELCF 85
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + G+ + + Q G + G N ++L PL SL+ I L+
Sbjct: 86 GALIGMGLGIPFWAAQAAGDMTDVYRGANAANLFDQINALETAPLGSLMMSIALVIFVSA 145
Query: 140 DFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ KS+ P+ + + + + + F L++PF+
Sbjct: 146 GGIIDLVAIFDKSFEFWPLFKLMPAMPDDPLDMILGVFGRLFKAAGLLAAPFMIVTCALE 205
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+S+ + + Q P+ + L + I F ++ GF
Sbjct: 206 LSLAFVGRSSKQFPLNDSLPAIKNFAVVVILVIYTAFISSYFHDLWIDGF 255
>gi|71388157|gb|AAZ31291.1| EpaR [Escherichia coli]
Length = 195
Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 5/184 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L + N ++ A
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALFQHYHYELSTLNEIDIA 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
++ E+ +G L+ GS I G L +++ + + + L L
Sbjct: 72 LFAA---REIIIGLFIACLLSSPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ + + L +SY P G + + + +S
Sbjct: 129 FNLFSAAVYLTNGGLNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTIVYAS 186
Query: 188 PFLF 191
P +
Sbjct: 187 PVIA 190
>gi|226326422|ref|ZP_03801940.1| hypothetical protein PROPEN_00270 [Proteus penneri ATCC 35198]
gi|225205205|gb|EEG87559.1| hypothetical protein PROPEN_00270 [Proteus penneri ATCC 35198]
Length = 257
Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 84/231 (36%), Gaps = 8/231 (3%)
Query: 20 GSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
M +P L+ + Q+ + ++ + + T ++++ + +++ EL
Sbjct: 23 FPVFMFIPFLNSRVLNSQLLKYIIVFYVAMGIKASIPITDNIRD-----SWGIILISELV 77
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
+G + G+LI G I G ++ ++ + + + SL G+ +
Sbjct: 78 IGILIGMLIATPFWIASAFGEFIDNQRGASIGDTINPTTGIESSEFASLTGLFCVAYFMN 137
Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198
+ L SY PIG N +S L + + L SP L + +
Sbjct: 138 TGGLIILMDTLKDSYDVFPIG-YFNQNIGYSFIGKWLTEMVRVAIVLVSPVLIIMFLSEV 196
Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI-EIIVYQFSHSFLYGFF 248
++G+ + PQ+ + +S + L L + S F +F
Sbjct: 197 ALGVYSLFCPQLNAFSLSLCIKGIIAFSALLLFFSSALTNDLSEFFNNRYF 247
>gi|293449183|ref|ZP_06663604.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B088]
gi|291322273|gb|EFE61702.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli B088]
Length = 207
Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 2/174 (1%)
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
+N + E+ +G L+ GS I G L +++ + + +
Sbjct: 17 LNEIDIALFAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSE 76
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
L L + + + L +SY P G + + +
Sbjct: 77 LARLFNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTI 134
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
+SP + + +GLL Q+ + IS L L L + I+
Sbjct: 135 VYASPVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFLILIIYFAPILA 188
>gi|238757867|ref|ZP_04619049.1| Secretion system apparatus protein ssaT [Yersinia aldovae ATCC
35236]
gi|238703852|gb|EEP96387.1| Secretion system apparatus protein ssaT [Yersinia aldovae ATCC
35236]
Length = 207
Score = 80.3 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 76/187 (40%), Gaps = 4/187 (2%)
Query: 30 SMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRV 89
S + +R +A + +LP + +++ + L+ E+ +G + G +
Sbjct: 20 SGNLGSPLIRNGVLLAVMLPMLPLIHAQVEIHP---GWGWLNLIPGEMLIGLLLGFCAAI 76
Query: 90 YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYAL 149
+ G +I T G + T + S+ + L L ++ + + AL
Sbjct: 77 PFWAVDMAGFLIDTLRGATMGTVFNPAMSVQTSILGLLFSQFLCALFFMTGGFNLLLSAL 136
Query: 150 VKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVP 208
SY P G L F+ + Q + + L S P + ++ ++++GLLN+
Sbjct: 137 YDSYHYFPPGNVLQFNSTFFNFLLTEWQMLYRLCLSFSLPAVLSMVLADLALGLLNRSAQ 196
Query: 209 QIPIYFI 215
Q+ ++F+
Sbjct: 197 QLNVFFL 203
>gi|304558281|gb|ADM40945.1| EsaT [Edwardsiella tarda FL6-60]
Length = 259
Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 97/239 (40%), Gaps = 2/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
L + + R ++++P + + + +R A+ ++ LP L +
Sbjct: 6 HWWPLLGIAMMRPLGIMLIMPLFNSAMLGGALIRNALALMAALPALPQLAALVLPSPLQA 65
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+Y L++ EL LG + G + L G +I T G ++ +P+
Sbjct: 66 PLHYGGLLLGELVLGLLLGFSAALPLWALNMAGFIIDTMRGASIAVLFNPLLGEQSSPMG 125
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLR 184
L + + V H + AL SYG +P GQ +G +++ + + L
Sbjct: 126 VLFSQLVGVLFIVGGGFHALLAALFSSYGDLPPGQYWLWGRGFIPLLMHLWHLLYTLALS 185
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S P + ++ ++++G +N+ V Q+ ++ +S P + L L +S+ + F
Sbjct: 186 FSMPAMVMMVLVDLALGFINRSVQQLNVFTLSMPIKSAMVLLMLIISLPFALDGVQALF 244
>gi|269138238|ref|YP_003294938.1| type III secretion apparatus protein [Edwardsiella tarda EIB202]
gi|62199650|gb|AAX76924.1| EsaT [Edwardsiella tarda]
gi|267983898|gb|ACY83727.1| type III secretion apparatus protein [Edwardsiella tarda EIB202]
Length = 260
Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 98/245 (40%), Gaps = 2/245 (0%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTID 59
M L + + R ++++P + + + +R A+ ++ LP L +
Sbjct: 1 MMAELNHWWPLLGIAMMRPLGIMLIMPLFNSAMLGGALIRNALALMAALPALPQLAALVL 60
Query: 60 LQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL 119
+Y L++ EL LG + G + L G +I T G ++
Sbjct: 61 PSPLQAPLHYGGLLLGELVLGLLLGFSAALPLWALNMAGFIIDTMRGASIAVLFNPLLGE 120
Query: 120 AETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTT 178
+P+ L + + V H + AL SYG +P GQ +G +++
Sbjct: 121 QSSPMGVLFSQLVGVLFIVGGGFHALLAALFSSYGDLPPGQYWLWGRGFIPLLMHLWHLL 180
Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+ + L S P + ++ ++++G +N+ V Q+ ++ +S P + L L +S+ +
Sbjct: 181 YTLALSFSMPAMVMMVLVDLALGFINRSVQQLNVFTLSMPIKSAMVLLMLIISLPFALDG 240
Query: 239 FSHSF 243
F
Sbjct: 241 VQALF 245
>gi|262360424|gb|ACY57145.1| type III secretion apparatus protein [Yersinia pestis D106004]
Length = 185
Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 1/167 (0%)
Query: 81 CVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVID 140
V G + + + G +I T G + T + + L I + +
Sbjct: 1 MVMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISG 60
Query: 141 FHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNIS 199
+QV AL SY ++PIGQ + ++ Q F + L + P L ++ ++S
Sbjct: 61 GFNQVLAALYGSYDSLPIGQGIQPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLS 120
Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
+GL+N+ Q+ ++F++ P L L +S+ ++ +
Sbjct: 121 LGLINRSARQLNVFFLAMPIKSALALFLLLISLPYGLHHYLSRMSDT 167
>gi|306841284|ref|ZP_07473995.1| flagellar biosynthesis protein FliR [Brucella sp. BO2]
gi|306288686|gb|EFM60017.1| flagellar biosynthesis protein FliR [Brucella sp. BO2]
Length = 203
Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 101/190 (53%)
Query: 53 FLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTS 112
L + + +L+ E+F+G + G+L +Y LQF ++++ A+G + +
Sbjct: 5 VLQRIVTAVDAGQPWTLFRLMAGEMFIGALIGILAHIYFWALQFMANMMAMAVGYSGSPA 64
Query: 113 MGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV 172
I+++ + L +++ L +V D H ++F AL+ SY IP+ F
Sbjct: 65 DSITENEPQATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAMIDFT 124
Query: 173 NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
+ L F+ LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L + +
Sbjct: 125 DALSAAFLATLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVVYFIL 184
Query: 233 EIIVYQFSHS 242
++ F+H
Sbjct: 185 PELLRFFTHE 194
>gi|256042857|ref|ZP_05445803.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str.
Rev.1]
gi|265989293|ref|ZP_06101850.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str.
Rev.1]
gi|262999962|gb|EEZ12652.1| flagellar biosynthesis protein FliR [Brucella melitensis bv. 1 str.
Rev.1]
Length = 203
Score = 79.2 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 105/194 (54%)
Query: 49 VLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLN 108
+LL L + + +L++ E+F+G + G+L +Y LQF ++++ A+G +
Sbjct: 1 MLLLVLQRIVTAVDAGQPWTLFRLMVGEMFIGALIGILAHIYFWALQFMANMMAMAVGYS 60
Query: 109 LQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF 168
+ I+++ + L +++ L +V D H ++F AL+ SY IP+
Sbjct: 61 GSPADSITENEPQATLATIVTFSALFLFFVTDMHLEIFRALLNSYVAIPVDGRFRPDAAM 120
Query: 169 SSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228
F + L F+ LR+++PF+ F I+ N +IGL+NKL P IP+YFIS P+++G G L +
Sbjct: 121 IDFTDALSAAFLATLRIAAPFIVFAILVNFAIGLVNKLTPAIPVYFISMPFVLGGGLLVV 180
Query: 229 CLSIEIIVYQFSHS 242
+ ++ F+H
Sbjct: 181 YFILPELLRFFTHE 194
>gi|154249643|ref|YP_001410468.1| type III secretion system inner membrane R protein
[Fervidobacterium nodosum Rt17-B1]
gi|154153579|gb|ABS60811.1| type III secretion system inner membrane R protein
[Fervidobacterium nodosum Rt17-B1]
Length = 255
Score = 79.2 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 101/239 (42%), Gaps = 4/239 (1%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +S LI+ R+ +++ + +P+++ + +A S V LP + + + ++
Sbjct: 8 QRYALSWGLILTRLTGMMVIALMFAGFSLPLEIMVVLLLALSYVTLPMVNIMVPITLPIS 67
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
++ F+G V GL+ + + G N+ S+ +
Sbjct: 68 T--LVISLLFNFFIGFVIGLMAYTIVGAVYIGSEIFGIQSGFNVSGSLDP-TMEESPITS 124
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG-QELNFGNIFSSFVNMLQTTFMIMLR 184
+ +I + + H ++ ++VKS P+ ++ F I S + + F+ L+
Sbjct: 125 EFVYLISVYVFVSLKGHLIIYSSVVKSIEKFPLVITDIPFKEINSQYFELFMDAFIFSLQ 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ P + + N+ G+L++LVPQ+ ++ ++ P + L L I + + +
Sbjct: 185 IALPLIGLMFLINVLFGILSRLVPQMNVFMVAMPASTMIMFLLLVTMIPVWIEMITRMI 243
>gi|28868601|ref|NP_791220.1| type III secretion protein HrcT [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968266|ref|ZP_03396410.1| type III secretion protein HrcT [Pseudomonas syringae pv. tomato
T1]
gi|301381805|ref|ZP_07230223.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
tomato Max13]
gi|302061996|ref|ZP_07253537.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
tomato K40]
gi|302135078|ref|ZP_07261068.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|11276518|gb|AAG33886.1| HrcT [Pseudomonas syringae pv. tomato]
gi|28851839|gb|AAO54915.1| type III secretion protein HrcT [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926904|gb|EEB60455.1| type III secretion protein HrcT [Pseudomonas syringae pv. tomato
T1]
gi|331015105|gb|EGH95161.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 264
Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 90/233 (38%), Gaps = 3/233 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ + L + R+ C++L+P Y+ +R +++ P + + N +
Sbjct: 11 LILGMGLAMARLVPCMLLVPAFCFKYLKGPLRYAVVAVVAMIPAPGISRALTSLN-DDWF 69
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ E+ LG + G+L+ G+++ + G + S TPL L
Sbjct: 70 AIGGLLLKEVVLGTLLGMLLYAPFWMFASVGALLDSQRGALSGGQINPSLGPDATPLGEL 129
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
++ + + + + SY P L F+ L T M+
Sbjct: 130 FQETLVMLVLISGGLSLITQVIWDSYMVWPPTSWLPGMTAEGLDVFLGQLNQTLQHMMLY 189
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ ++ ++ Q+ + ++ P G FL + + ++
Sbjct: 190 AAPFIALLLLIEAALAIIGLYAQQLNVSILAMPAKSMAGIAFLLVYLPTLLEL 242
>gi|296534147|ref|ZP_06896643.1| flagellar biosynthetic protein FliR [Roseomonas cervicalis ATCC
49957]
gi|296265523|gb|EFH11652.1| flagellar biosynthetic protein FliR [Roseomonas cervicalis ATCC
49957]
Length = 258
Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 1/230 (0%)
Query: 18 RVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVEL 77
R+G+C M+LPGL +P+ VRL A+A +LLP L + + A +L+ +E+
Sbjct: 23 RMGACGMVLPGLGEQEVPVTVRLALALAVVALLLPVLGPQLP-PEPQDMAGLVRLIALEV 81
Query: 78 FLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALW 137
+G G L R+ +Q G I IGL+ S + T L G+ + L
Sbjct: 82 AIGFWIGWLARLMVYAVQVAGQAIGLMIGLSSVLSQDPTMGEGSTALGRFFGLAAVSLLL 141
Query: 138 VIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ AL +SY +P+G L G + +F + LRL++P + ++
Sbjct: 142 ASGLYALPLRALAESYALLPVGAPLPAGPAAEAVAQASAASFALALRLAAPLILLTLLLQ 201
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ GLL ++ PQ +Y ++ P G L L + ++ + + GF
Sbjct: 202 MGSGLLARIAPQAQVYILALPAQSLAGIALLALLLPALLAFWGEAARAGF 251
>gi|331669595|ref|ZP_08370441.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli TA271]
gi|331063263|gb|EGI35176.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli TA271]
Length = 188
Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 2/163 (1%)
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
+N + E+ +G L+ GS I G L +++ + + +
Sbjct: 17 LNEIDIALFAAREIIIGLFIACLLASPFWMFLAIGSFIDNQRGATLSSTLDPATGVDTSE 76
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
L L + + + L +SY P G + + +
Sbjct: 77 LARLFNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLFSYINNIMTHTI 134
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSL 226
+SP + + +GLL Q+ + IS L
Sbjct: 135 VYASPVIAVMLGGEAVLGLLACYASQLNAFAISLTVKSALAFF 177
>gi|330872920|gb|EGH07069.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963057|gb|EGH63317.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 264
Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 90/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ + L + R+ C++L+P Y+ +R +++ P + + N +
Sbjct: 10 ELILGMGLAMARLVPCMLLVPAFCFKYLKGPLRYAVVAVVAMIPAPGISRALTSLN-DDW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ LG + G+L+ G+++ + G + S TPL
Sbjct: 69 FAIGGLLLKEVVLGTLLGMLLYAPFWMFASVGALLDSQRGALSGGQINPSLGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L F+ L T M+
Sbjct: 129 LFQETLVMLVLISGGLSLITQVIWDSYMVWPPTSWLPGMTAEGLDVFLGQLNQTLQHMML 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ ++ ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAALAIIGLYAQQLNVSILAMPAKSMAGIAFLLVYLPTLLEL 242
>gi|91782704|ref|YP_557910.1| putative type III secretion system innermembrane protein,
HcrT/YscT-like [Burkholderia xenovorans LB400]
gi|91686658|gb|ABE29858.1| Putative type III secretion system innermembrane protein,
HcrT/YscT-like protein [Burkholderia xenovorans LB400]
Length = 265
Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/247 (14%), Positives = 81/247 (32%), Gaps = 12/247 (4%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+++ + R + L+P + + +RL +A +++
Sbjct: 24 LSMETIRYIEGFAFCTIRPAVALSLVPFNQGGSVGIVLRLPLMIAIAML----------P 73
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
Q + + E+ G V GLL+ G+V+ G +
Sbjct: 74 QQVGWPPHLWAGMFFEMATGAVLGLLLGTIFHAAGAAGAVLDQQGGYTSAAIYDPNFQQE 133
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTT 178
SL L L+ ++ ++ P G+ L +
Sbjct: 134 AALFESLFLQFAALTLFTGPGLPLLYGFFTDAWVLWPPGRWRGDLVDVFGQLAQRNLADS 193
Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
LRL+SP L ++ +I+ GL+++ ++ + + + + LS+ + Q
Sbjct: 194 LTEGLRLASPLLGLVLLVDIAFGLMSRHAKRLNPFATARTVKAAVLTFAAVLSVPALFAQ 253
Query: 239 FSHSFLY 245
+F +
Sbjct: 254 LRLAFDH 260
>gi|27376932|ref|NP_768461.1| RhcT protein [Bradyrhizobium japonicum USDA 110]
gi|12620528|gb|AAG60804.1|AF322012_109 RhcT [Bradyrhizobium japonicum]
gi|27350074|dbj|BAC47086.1| RhcT protein [Bradyrhizobium japonicum USDA 110]
Length = 273
Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 88/242 (36%), Gaps = 4/242 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + L R +++LP + I +R +A + L + +
Sbjct: 12 LVQGSIEFVAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLAQIKLGLQA 71
Query: 61 QNFVNRAYYSKLV-MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDS 118
+ R ++ + E+F+G + G+L+ + +Q G +I T G+ + +
Sbjct: 72 LDPNTRLVSVTMLGVKEVFVGLMLGILLSIPLWSIQAVGDIIDTQRGISSQVAGEDPATH 131
Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQ 176
T +G+ + ++ + L SY P+ Q L + +L
Sbjct: 132 SQATGTGLFLGVTAVTIFVLVGGLQTMVSGLYGSYLVWPVYQFLPALTVQGAMECLALLD 191
Query: 177 TTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
M L ++ P L ++ +IS+ +L + Q+ + +S + + ++
Sbjct: 192 RIMMTTLLVAGPVLALLLLVDISVMMLGRFASQLKMNDLSPMIKNVAFGVIMVSYTVYLL 251
Query: 237 YQ 238
Sbjct: 252 EY 253
>gi|213420255|ref|ZP_03353321.1| virulence-associated secretory protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 229
Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 72/199 (36%), Gaps = 5/199 (2%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98
R + ++ + P ++ LV+ E +G + G L+ + G
Sbjct: 9 RNAIIILVALGVWPH---ALNEAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALG 65
Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158
+I G L +S+ ++ + + + + + + + + L KSY
Sbjct: 66 CIIDNQRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDP 125
Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218
E + + L L+SP + ++ + +GLL++ PQ+ + IS
Sbjct: 126 MNECTPS--LPPLLTFINQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLT 183
Query: 219 YLIGLGSLFLCLSIEIIVY 237
G+ L + L ++
Sbjct: 184 VKSGIAVLIMLLYFSPVLP 202
>gi|82795280|gb|ABB91649.1| type III secretion protein HrcT [Pseudomonas syringae pv. tagetis]
Length = 264
Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 89/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
++ + L + R+ C++L+P Y+ +R +++ P + + N +
Sbjct: 10 EFILGMGLAMARLVPCMLLVPAFCFKYLKGPLRYAVVAVVAMIPAPGISRALTSLNE-DW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + G+L+ G+++ + G + + TPL
Sbjct: 69 FAIGGLLLKEAVLGTLLGMLLYAPFWMFASVGALLDSQRGALSGGQINPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L N F+ + T M+
Sbjct: 129 LFQETLIMLVILTGGLSMITQVIWDSYSVWPPTSWLPGMTANGLDVFLGQINQTLQHMML 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ ++ ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAALAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|312958830|ref|ZP_07773349.1| type III secretion system rscT [Pseudomonas fluorescens WH6]
gi|311286600|gb|EFQ65162.1| type III secretion system rscT [Pseudomonas fluorescens WH6]
Length = 262
Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 3/241 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C L+ +I R M +++ P + ++ ++
Sbjct: 6 EFLPSLVVGMARIYPCAFLVAAFCFQHIRGMPRHTIVMVMALMPAPGIHAALEELDYSAL 65
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
S LV+ E+ LG + G+L+ + + G+++ G + S TP+
Sbjct: 66 M-LSALVLKEIALGLLLGVLLSMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPVGH 124
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L + + L V + + SY P N S FV++L TF M+
Sbjct: 125 LFKQLAIFLLMVTLGLGALTQVIWDSYRIWPPTAWFPLPAANGMSLFVDLLGDTFTHMML 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++PF+ ++ I LL Q+ + ++ P G L L ++
Sbjct: 185 YAAPFIAVLLLLEFGIALLGVYSQQLQVSTLAPPVKCLAGIGILLLYFALLQDLIVGRMS 244
Query: 245 Y 245
Sbjct: 245 Q 245
>gi|237678815|emb|CAQ57542.1| RHCT protein [Bradyrhizobium elkanii]
Length = 273
Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 90/229 (39%), Gaps = 4/229 (1%)
Query: 14 LIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY-YSKL 72
L R +++LP + I +R +A + LP + ++ + R + L
Sbjct: 25 LSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLPQIKLGLEALDPNTRLVSVAML 84
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM-GISDSLAETPLNSLIGII 131
+ E+F+G + G+L+ + +Q G +I T G++ Q + + + +G+
Sbjct: 85 GLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQVAAEDPATHSQASGTGLFLGVT 144
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPF 189
+ ++ + +L SY P+ + L + +L + L ++ P
Sbjct: 145 AVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTAQGAMECLALLDHIMLTTLLVAGPV 204
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L ++ ++S+ +L + Q+ + +S + + ++
Sbjct: 205 LALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFGVIMVSYTVYLLEY 253
>gi|296162492|ref|ZP_06845283.1| type III secretion system inner membrane R protein [Burkholderia
sp. Ch1-1]
gi|295887305|gb|EFG67132.1| type III secretion system inner membrane R protein [Burkholderia
sp. Ch1-1]
Length = 240
Score = 78.4 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 33/245 (13%), Positives = 80/245 (32%), Gaps = 12/245 (4%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ P + R + ++P + ++R+ + +++ W +
Sbjct: 1 MDPIRYLEGFAFCTIRPAVALSMIPFSQSGPLGSKLRVPLLLVIAMLPQQVGWPPHPVP- 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
++VE+ G V GLL+ G+++ G
Sbjct: 60 ---------AMVVEVATGVVLGLLLGTIFHAAGAAGAMLDQQGGYASAAMYDPHFQQEAA 110
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL--NFGNIFSSFVNMLQTTFM 180
L L L+ +F ++ P GQ + L
Sbjct: 111 LFEQLFLQFAALTLFTGPGLPLLFGFFTDAWVLWPPGQWRGDLVDVFRQLALRNLADVLT 170
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+RL++P L ++ +++ GL+++ ++ + + G+ + LS+ + Q
Sbjct: 171 EGVRLATPLLGLMLLVDVAFGLMSRHAKRLNPFATARTVKAGVLTFAAVLSVPALFAQLR 230
Query: 241 HSFLY 245
+F +
Sbjct: 231 IAFDH 235
>gi|254254349|ref|ZP_04947666.1| Type III secretory pathway component EscT [Burkholderia dolosa
AUO158]
gi|124898994|gb|EAY70837.1| Type III secretory pathway component EscT [Burkholderia dolosa
AUO158]
Length = 198
Score = 78.4 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 2/178 (1%)
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ LV E +G + +Q G +I G P +
Sbjct: 1 MWCLLVAKEAVVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGF 60
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRL 185
+ + + + +SY PIG + + V T F M++L
Sbjct: 61 LNFVAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVKL 120
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++P + ++ + IGL+ + VPQ+ I+ S P L L + L + ++
Sbjct: 121 AAPVIIVLVLVELGIGLVGRAVPQLNIFVFSQPVKSALAVLMMVLFLPVVYASLHSLL 178
>gi|254473504|ref|ZP_05086901.1| type III secretion system inner membrane R protein [Pseudovibrio
sp. JE062]
gi|211957620|gb|EEA92823.1| type III secretion system inner membrane R protein [Pseudovibrio
sp. JE062]
Length = 227
Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 2/217 (0%)
Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTI-DLQNFVNRAYYSKLVMVELFLGCV 82
M +PG S + +QVRL A++ ++ + P + + + + + +++ VEL +G +
Sbjct: 1 MAMPGFSSPRVMVQVRLFIAISATLAISPLILVLVEPIISAASLDELLRIIFVELLIGFL 60
Query: 83 HGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFH 142
R + LQ + A N + + + P+ LI + L++ H
Sbjct: 61 IAAFGRAFFGMLQMMAGAAANASSFNQPAPI-VEEFQQLPPMAGLITLTATAMLFITGAH 119
Query: 143 HQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGL 202
VF L +SY IP+G + F L ++ LR++SPFL + IV N+++GL
Sbjct: 120 ADVFIGLAESYQAIPVGGDFVPSAAVDQFSTKLMQGLLLALRITSPFLIYGIVVNLTLGL 179
Query: 203 LNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
N+L+PQ+P+YF++ P ++ G L I ++ F
Sbjct: 180 TNRLMPQMPVYFVALPVVVMGGLFVLWQIITELLRLF 216
>gi|15639703|ref|NP_219153.1| flagellar biosynthetic protein (fliR) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025941|ref|YP_001933713.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum
SS14]
gi|3023765|sp|P74932|FLIR_TREPA RecName: Full=Flagellar biosynthetic protein fliR
gi|973199|gb|AAB00548.1| FliR [Treponema pallidum]
gi|3323018|gb|AAC65682.1| flagellar biosynthetic protein (fliR) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018516|gb|ACD71134.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum
SS14]
gi|291060080|gb|ADD72815.1| flagellar biosynthetic protein FliR [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 265
Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/238 (20%), Positives = 93/238 (39%), Gaps = 3/238 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
FL RV + + +P LS+ + VR+ A + ++LP + +Q AYY
Sbjct: 15 FFLAAVRVFALMFTVPLLSVRSVSRVVRVALAGLIAFLVLPLAYPA-PMQVREFSAYYVL 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
L++ E LG + G I V G S +G + + + +
Sbjct: 74 LLLGEGLLGILTGFFISVIFTTFSAAGQFFSYQMGFGTSEMYDTFAQIENPLMGQFLNFV 133
Query: 132 GLLALWVIDFHHQVF-YALVKSYGTIPIGQELNFGN-IFSSFVNMLQTTFMIMLRLSSPF 189
+L I +F +++S+ + L + F L F+ + ++ P
Sbjct: 134 AMLVFLQIKGFQILFLGGVLRSFQAVNCFVFLRKQEALLLFFTKALSALFLHAMTIALPI 193
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ ++ ++S+GLL K PQ+ + P I + + L + + ++ F GF
Sbjct: 194 MGALLLIHVSMGLLTKAAPQMNLLSEGLPLTIVVTFVLLSVILPYMINLFVSILFGGF 251
>gi|332526331|ref|ZP_08402458.1| Type III secretory pathway protein [Rubrivivax benzoatilyticus JA2]
gi|332110468|gb|EGJ10791.1| Type III secretory pathway protein [Rubrivivax benzoatilyticus JA2]
Length = 264
Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 4/239 (1%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ + L R +LLP + +P VR A+ + L+ ++
Sbjct: 15 LLVALASTRFAVAFLLLPIFASETVPALVRN--AIFVGLGLITLAVQPAVPVQGWTAGHW 72
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
L E LG G+L+ + G ++ +G L + +L+
Sbjct: 73 MLLFGREALLGIGVGVLLGAVLWAFEAAGQIVDAKVGATLAQVADPLSGHQTSLSGALLS 132
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSS--FVNMLQTTFMIMLRLSS 187
+ + + V+S+ P+ Q + F + ++ L++
Sbjct: 133 RLAMFLFMAGGGFLALVAVAVQSFAMWPLAQPGLNFDAADVRIFESAFAQLMVLAFLLAA 192
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++++GL+N+ PQ+ + IS +L L ++V G
Sbjct: 193 PALVVLYALDLALGLVNRFAPQLNLISISMSLKSVAATLVWVLMFTVLVDAIVARIDDG 251
>gi|238918896|ref|YP_002932410.1| type III secretion apparatus protein SpaR/YscT/HrcT, [Edwardsiella
ictaluri 93-146]
gi|48256990|gb|AAT41685.1| type three secretion apparatus protein T [Edwardsiella ictaluri]
gi|84663104|gb|ABC60086.1| EsaT [Edwardsiella ictaluri 93-146]
gi|238868464|gb|ACR68175.1| type III secretion apparatus protein SpaR/YscT/HrcT, putative
[Edwardsiella ictaluri 93-146]
Length = 259
Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 95/239 (39%), Gaps = 2/239 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
L + + R ++++P + + + +R AM ++ LP L +
Sbjct: 6 HWWPLLGIAMMRPLGIMLIMPLFNSAMLGGALIRNALAMMAALPALPHLALMVLPSPLQA 65
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+Y L++ EL +G + G + L G +I T G ++ +P+
Sbjct: 66 PLHYGGLLLGELVVGLLLGFSAALPLWALNMAGFIIDTMRGASIAVLFNPLLGEQSSPMG 125
Query: 126 SLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLR 184
L + + H + AL SYG +P GQ +G +++ + + L
Sbjct: 126 VLFSQLVGVLFIAGGGFHALLTALFSSYGDLPPGQYWQWGRGFIPLLMHLWHLLYSLALS 185
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
S P + ++ ++++G +N+ V Q+ ++ +S P + L L +S+ +
Sbjct: 186 FSMPAMVMMVLVDLALGFINRSVQQLNVFTLSMPIKSAIVLLMLIISLPFSLAGLQALL 244
>gi|323223785|gb|EGA08089.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
Length = 183
Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 1/164 (0%)
Query: 77 LFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLAL 136
++ + G L + G ++ T G + T + + L +
Sbjct: 2 IYWVFLIGFLCGGPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIF 61
Query: 137 WVIDFHHQVFYALVKSYGTIPIGQELNFG-NIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195
++ + L +SY +P G+ L F +T + + + S P + ++
Sbjct: 62 FISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVL 121
Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++++GLLN+ Q+ ++F S P L L L +S ++ +
Sbjct: 122 ADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHHY 165
>gi|126730128|ref|ZP_01745940.1| flagellar biosynthetic protein FliR [Sagittula stellata E-37]
gi|126709508|gb|EBA08562.1| flagellar biosynthetic protein FliR [Sagittula stellata E-37]
Length = 256
Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 106/232 (45%), Gaps = 3/232 (1%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
+ R+ + + +LP I ++VRL A+ ++V+ P I+L A + +
Sbjct: 19 LAVFLRIAAVLAILPAFGEQVISVRVRLVLALLLTVVVTPAAAPLIELPPPSFGA-FLRA 77
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+ E G G+++R + +Q G++ + + L+ +G + + ++ + G
Sbjct: 78 LATETISGLFLGIMLRTFVFAIQTAGAIAAQSTSLS--QLLGQAGMDPLPAIGHILTMAG 135
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
L L FH V +V SY +P + N +I + + +F + L++PF+
Sbjct: 136 LALLMATGFHVNVAAFIVLSYDILPFMEFPNAASIAEAGRARVAQSFGLAFSLAAPFVIL 195
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
+++N+++G +NK +PQ+ + F+ P + L +S ++ + +
Sbjct: 196 SVIYNLTLGAINKAMPQLMVAFVGAPVITFGAIATLLVSAPFMLSVWLTAVE 247
>gi|330809226|ref|YP_004353688.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377334|gb|AEA68684.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 247
Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 7/240 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ L+ R+ +++ P L S IP+ VRL A+A S VL+ + T +
Sbjct: 5 FFLNALLVSVRLIPLVVVSPILFFSRIPLTVRLILALALSGVLVGSMTLTHAPVFTLPVV 64
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L+ V + G G+ G +I T IGLN S + L
Sbjct: 65 LGELLLGVLMAFGF------HAAHAGVDMAGKLIDTQIGLNAAGVFDPGTSNMTGLMAEL 118
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ V++ HH + + +P G S M Q F++ +
Sbjct: 119 LVWSLGALFVVLNLHHDLLRVFAQLLVAVPPGSVSLSTLSVSLATVMTQQ-FLLAFMIVV 177
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
P + + +++ L++ +PQ +YF+S P +G+G L++ +IV +
Sbjct: 178 PVILGLWLIDVAFAFLSRSMPQANVYFLSLPLKLGVGMFIFILTLPMIVQRLPLLIESAL 237
>gi|229588263|ref|YP_002870382.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
gi|229360129|emb|CAY46986.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
Length = 262
Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 92/239 (38%), Gaps = 3/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C +L+ +I R M +++ P ++ + Q++ +
Sbjct: 6 EYLPSLVIGMARIYPCGILVAAFCFQHIRGMPRHTLVMVLALMPAPGIYAALAGQDY-SA 64
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E+ LG + G+L+ + + G+++ G + S TP+
Sbjct: 65 ILLGALVLKEVALGVLLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGH 124
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L + + L V + + SY P N S F+++L TF ML
Sbjct: 125 LFKQLAIFLLMVSLGLGTLTQVIWDSYLIWPPTAWFPLPAANGMSVFIDLLGDTFTHMLL 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++PF+ ++ I LL Q+ + ++ P G L L ++
Sbjct: 185 YAAPFIAVLLLLEFGIALLGVYSQQLQVSTLAPPVKSLAGIGILLLYFALLQDLIVGRM 243
>gi|285018285|ref|YP_003375996.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
GPE PC73]
gi|283473503|emb|CBA16006.1| probable xanthomonas secretion apparatus protein [Xanthomonas
albilineans]
Length = 256
Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 80/230 (34%), Gaps = 6/230 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ ++ RV L+P +S ++ V R + I L + ++
Sbjct: 15 LVLWAMLYARVAPTFQLIPIISSRFVVNPVTRQIVILFVVIGLESHVPFRVNGP---AGV 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ +VE +G V +++ G +I G + S+ + + + +
Sbjct: 72 ALAGSCVVETIIGIVISVIVASPFWIASVVGELIDNQRGATIADSIDPASGVEASVMAPF 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSS 187
+ ++ + KS +P+GQ +F + V +L + + +S+
Sbjct: 132 LNLMFANVFLQKGGLIVLMLFFSKSLSDVPLGQIPHFS--YVGLVTLLGHVLQLAISISA 189
Query: 188 PFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
P ++ + + L++ Q+ + +S + +V
Sbjct: 190 PVAIGLMLLDGVLAFLSRFCKQLNAFSLSLTVKSLAAYGIMYFYFSSVVP 239
>gi|330894460|gb|EGH27121.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
mori str. 301020]
Length = 264
Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 87/234 (37%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R ++V P + + + N
Sbjct: 10 QFMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVVAMVPAPAISRALGSLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + + + + SY P L F+ L T ML
Sbjct: 129 LFQETLIMLVILTGGLSLITQVIWDSYSVWPPTAWLPGMTAGGLDVFLEQLNQTMQHMLL 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|284006886|emb|CBA72155.1| type III secretion component protein SctT [Arsenophonus nasoniae]
Length = 240
Score = 76.5 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 5/220 (2%)
Query: 20 GSCIMLLPGLSMSYIP-MQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELF 78
C LP LS + +R + L+P + + L ++ Y L++ E+
Sbjct: 1 MGCFTTLPILSKKLLGGTLLRNGILFSLLFFLIPTIDAQLILN--ISGNEYILLIIKEIL 58
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
LG G + + +Q G +I G + + + +P+ ++
Sbjct: 59 LGFFFGFIAAIPFWMMQSIGFMIDNQRGTTMASIVNPLFDEQTSPMGLFFSQAFTTLFFI 118
Query: 139 IDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVF 196
+ L S+ PI L + FV + L L++P + +
Sbjct: 119 SGNFLLLIQTLYHSFSIWPIYHFLPGFNQQLCVFFVQQFKLMLDNFLLLAAPLVIAMFIV 178
Query: 197 NISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
+ L+++ P + ++ +S P + SL L +++
Sbjct: 179 EWGLALISRFAPSLNVFILSMPLKGAISSLLLVSYFSVLI 218
>gi|222082191|ref|YP_002541556.1| type III secretion apparatus protein SpaR/YscT/HrcT [Agrobacterium
radiobacter K84]
gi|221726870|gb|ACM29959.1| type III secretion apparatus protein SpaR/YscT/HrcT [Agrobacterium
radiobacter K84]
Length = 271
Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 3/230 (1%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+ + P S+ I +R+ A+ S + F + + + L + E
Sbjct: 29 LGILSIFPLFSLFSITGLLRIGLAIGLSAPAVAFAHAVL-AEGQTSYLILGVLFLKEFVF 87
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVI 139
G + G+ + + Q G + G N ++L T L S++ I L
Sbjct: 88 GGLIGMGLGIPFWAAQSAGDMTDVYRGANAANLFDQVNALETTTLGSVLMSIALAIFVAT 147
Query: 140 DFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFN 197
+ KS+ P+ G+ +++ F + L++PF+
Sbjct: 148 GGITDLVAIFYKSFEFWPLFTLKPAFDGDALKIILDIFIQLFRMGTLLAAPFVIIIGAIE 207
Query: 198 ISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+S+G + + Q P+ + + L L F+ ++ GF
Sbjct: 208 LSLGFVGRSAKQFPLNDSVATFKNLAVAAVLVLYAMFAGSYFNEIWIRGF 257
>gi|167841196|ref|ZP_02467880.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia
thailandensis MSMB43]
Length = 240
Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 5/228 (2%)
Query: 22 CIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGC 81
++ +P L + +RL A+A ++ LPF + + + + E LG
Sbjct: 1 MLLAIPPLMKAGHAWTMRLPIALALALPSLPFAYHMMPSALPAGQIAFV--AAREFALGV 58
Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSL-AETPLNSLIGIIGLLALWVID 140
+ G+ + G+ + GL + + + T + L
Sbjct: 59 LTGMFFLPLFSVPRAVGTFVDQQAGLMSVQLFDPTSTERSATVFADVFEQSALFMFVASG 118
Query: 141 FHHQVFYALVKSYGTIPI--GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198
+ S P+ ++ +R + PF+ I+
Sbjct: 119 GFGALGELYAMSQRFWPVTEMNAPPIADVTDIARQGFNAMVDTAIRHAGPFVATLILVEY 178
Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
IGL+ + PQ+ I S + + + + + F +
Sbjct: 179 GIGLIGRAAPQLNILTTSVAIKLVFALVLIAIVGPGFIDAFVDALHEA 226
>gi|119385354|ref|YP_916410.1| flagellar biosynthetic protein FliR [Paracoccus denitrificans
PD1222]
gi|119375121|gb|ABL70714.1| flagellar biosynthetic protein FliR [Paracoccus denitrificans
PD1222]
Length = 252
Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 53/227 (23%), Positives = 107/227 (47%), Gaps = 5/227 (2%)
Query: 16 VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMV 75
CRV +C ++LP S +P++VR MA + +L + + + L
Sbjct: 21 YCRVQACFLMLPVFSERAMPVRVRAALVMAVTPLLA---EHAQSVGGIDGLLHLAALAGA 77
Query: 76 ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLA 135
E+ G V G L+R++ + L + I+ L+ +G ++ + P+ +L+ + GL
Sbjct: 78 EILSGLVLGGLVRLFAVALNIAATAIAATASLS--QLIGAANEYSPHPIGNLMHLAGLAV 135
Query: 136 LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIV 195
L + F L +S P+G S V++++ +F++ + L++PF+ +
Sbjct: 136 LMALGFPVLACDLLRESLVLRPLGDWPQVSEALPSAVSLVRQSFVLAMLLAAPFILGGFL 195
Query: 196 FNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
F + G+++K++P +P+ FI P I L L L + I+ + +
Sbjct: 196 FQVLSGMISKVMPTLPVIFIGAPGAILLALLALVMLAPSILSVWVDA 242
>gi|170738292|ref|YP_001779552.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia
MC0-3]
gi|169820480|gb|ACA95062.1| type III secretion protein SpaR/YscT/HrcT [Burkholderia cenocepacia
MC0-3]
Length = 269
Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/236 (16%), Positives = 92/236 (38%), Gaps = 5/236 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
M+ + + R+ + + P I ++R + +SI + + L ++
Sbjct: 19 FMILVAVCGVRLLVLMTIFPPTGGELITKRIRNAMVVLWSIYVA---YGQQALMTQLHGG 75
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ +V+ E +G V + + G+ I G N S T ++L
Sbjct: 76 FLLAVVVKEAVIGLVIAFVASPVFWVAEAVGTYIDDLTGYNNVQITNPSLGQQTTLTSTL 135
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIF--SSFVNMLQTTFMIMLRL 185
+ +A W + + A+ ++Y P+G F + + + + + +L
Sbjct: 136 LMQCATVAFWTLGGMTFLLGAVFQTYVWWPLGSLTPVPRAFIEAFVMQQTDSLMVTIAKL 195
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
+ P + ++ ++ +GLL+++ ++ + ++ P L L L L I + + Q
Sbjct: 196 AGPAVLLLLLVDVGVGLLSRIASKLDLVSLAQPVKGALAVLLLALMIGMFIGQVKD 251
>gi|187919908|ref|YP_001888939.1| type III secretion system inner membrane R protein [Burkholderia
phytofirmans PsJN]
gi|187718346|gb|ACD19569.1| type III secretion system inner membrane R protein [Burkholderia
phytofirmans PsJN]
Length = 241
Score = 75.3 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 85/242 (35%), Gaps = 12/242 (4%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ R + L+P + + +RL + F+ + Q
Sbjct: 6 GYVEGFAFCTIRPVVALSLVPFGGSESLGVTLRLPLMLMFATL----------PQQIGWP 55
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A VE+ +G + GLL+ V G++I G ++ +S +
Sbjct: 56 ADPIVAASVEVLVGLLLGLLLSVAFHAAGAAGALIDQQGGYSIGSSYDPNFRDESALFER 115
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L + L + V+ ++ P G + L + + R
Sbjct: 116 LFIWLATLTFFTGKGLQAVYGFFADAWVLWPPGAPRPDHMRVMRELAEQRLPLSMVEGAR 175
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ P + ++ +IS+GL+++ ++ + + + SL + + +++ + + FL
Sbjct: 176 IAMPLIGMMLLVDISMGLMSRYAKRLNPFTTARTVKAIVLSLVIVACVPVLIERLNALFL 235
Query: 245 YG 246
G
Sbjct: 236 QG 237
>gi|206896484|ref|YP_002246702.1| bacterial export protein, family 1 [Coprothermobacter proteolyticus
DSM 5265]
gi|206739101|gb|ACI18179.1| bacterial export protein, family 1 [Coprothermobacter proteolyticus
DSM 5265]
Length = 248
Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 82/214 (38%), Gaps = 5/214 (2%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ + + R+ ++ P L + ++ + + A S++ + D + + + +
Sbjct: 6 LGFWPVFFRLLGFVLATPILPTRFFNLRTKAVLSFAISLI---SVPDFVAVLSLQTSVSW 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ + E LG + G+ + L F G + G + T++ S+ + +
Sbjct: 63 VQIYITEFALGLLLGIFSGIVYWALVFAGDLWDIMSGFQMMTAIDPFTSVPQPVMTQFFS 122
Query: 130 IIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPF 189
++ V ++ SY IP G ++ S L F + L ++ P
Sbjct: 123 LMAAAVFVVGGGLDSFIALVIMSYRLIPAGSFIHL--ALSEPALFLTRVFSLGLAVAIPI 180
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223
+ I+ +G+++K P++ + P +
Sbjct: 181 VVLVILLEFIMGVVSKGASGFPVFVVWIPLQTAV 214
>gi|323166470|gb|EFZ52234.1| type III secretion apparatus protein SpaR/YscT/HrcT [Shigella
sonnei 53G]
Length = 182
Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 2/172 (1%)
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
+ E+ +G + + + GS+I G L +S+ ++ + + L +
Sbjct: 1 MFKEIIVGLLLSFCLSLPFWIFHAVGSIIDNQRGATLSSSIDPANGVDTSELAKFFNLFS 60
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
+ + ++ SY P+ + +F S+ + L + L+SP +
Sbjct: 61 AVVFLYSGGMVFILESIQLSYNICPLFSQCSFR--VSNILTFLTLLASQAVILASPVMIV 118
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFL 244
++ + +G+L++ PQ+ + +S L + + I + FL
Sbjct: 119 LLLSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFIIFICSSTIYFSKVQFFL 170
>gi|304414278|ref|ZP_07395646.1| type III secretion system apparatus protein [Candidatus Regiella
insecticola LSR1]
gi|304283492|gb|EFL91888.1| type III secretion system apparatus protein [Candidatus Regiella
insecticola LSR1]
Length = 275
Score = 74.2 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 104/234 (44%), Gaps = 3/234 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++L L + R +++LP + + +R +A ++ + P + + L + +
Sbjct: 14 WVVALALAMMRPLGILLILPLFTAQSLGSSLLRNGLVVAIALPMTPMFFSS-PLIHSSSI 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ ++M+EL +G + G + + G +I T G + T + + + +
Sbjct: 73 MLWCSIIMIELLIGIIIGFFAALPFWAIDMAGFLIDTLRGATMATLLNPTMGMQSSIFGI 132
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN-MLQTTFMIMLRL 185
L I + + +Q+ L SY +P GQ + + F +F+ + F + L
Sbjct: 133 LFTQILSVLFLISGGFNQLLLVLYGSYKILPTGQGITLSDAFFTFIRVQWKLMFELCLTF 192
Query: 186 SSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ P L ++ ++++GL+N+ Q+ ++F++ P + L + + + + +
Sbjct: 193 ALPALLVMLLTDLALGLINRSAQQLNVFFLAMPIKSAMALFLLLIGLPLAFHHY 246
>gi|322654744|gb|EFY51063.1| secretory protein (associated with virulence) [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
Length = 214
Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 2/183 (1%)
Query: 55 WDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMG 114
++ LV+ E +G + G L+ + G +I G L +S+
Sbjct: 7 PHALNEAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSID 66
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM 174
++ + + + + + + + + L KSY E +
Sbjct: 67 PANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNECTPS--LPPLLTF 124
Query: 175 LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEI 234
+ L L+SP + ++ + +GLL++ PQ+ + IS G+ L + L
Sbjct: 125 INQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSP 184
Query: 235 IVY 237
++
Sbjct: 185 VLP 187
>gi|15042144|gb|AAK81925.1|AF292566_9 RscT [Pseudomonas fluorescens]
Length = 262
Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 91/239 (38%), Gaps = 3/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C +L+ +I R M +++ P ++ + Q++ +
Sbjct: 6 EYLPSLVIGMARIYPCGILVAAFCFQHIRGMPRHTLVMVLALMPAPGIYAALAGQDY-SA 64
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E+ LG + G+L+ + + G+++ G + S TP+
Sbjct: 65 ILLGALVLKEVALGVLLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGH 124
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFG--NIFSSFVNMLQTTFMIMLR 184
L + + L V + + SY P N S F+++L TF ML
Sbjct: 125 LFKQLAIFLLMVSLGLGTLTQVIWDSYLIWPPTAWFPLPAANGMSVFIDLLGDTFTHMLL 184
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++PF+ ++ I L Q+ + ++ P G L L ++
Sbjct: 185 YAAPFIAVLLLLEFGIAQLGVYSLQLQVSTLAPPVKSLAGIGILLLYFALLQDLIVGRM 243
>gi|86157786|ref|YP_464571.1| type III secretion system inner membrane R protein
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85774297|gb|ABC81134.1| type III secretion system inner membrane R protein
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 250
Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/226 (15%), Positives = 77/226 (34%), Gaps = 1/226 (0%)
Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
P L++ R + P L +P +VRL A+A + + +
Sbjct: 3 LPLATAWGFGLLLLRTAGLCAVAPVLGARVVPARVRLALALALTWAVHAGAGS-PAVAPP 61
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
A + + E G + GL R G + + GL + +
Sbjct: 62 AGLAGLAGAALAETATGLLAGLAARWTLDAALAAGHLAGLSAGLGYSALVDPITGAESSA 121
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
++ + ++ + H + LV+S P G + + S + + +
Sbjct: 122 VSQTVFVVAQAVAVALGVHREAVAWLVRSAVAWPPGAAPDPAGLASRAAGQAILSVALAV 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC 229
RL+ P + ++ ++ + ++ ++ PQ+ + + L L
Sbjct: 182 RLAFPVMAAALLGHLLLAVMGRMAPQLSLSNVGFSASTLAAGLALY 227
>gi|330940693|gb|EGH43705.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 143
Score = 73.4 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 114 GISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVN 173
++ ++ + ++ L ++ H V LV+S+ T+P+G L N + N
Sbjct: 1 DPTNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNNFWE-LAN 59
Query: 174 MLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIE 233
L +RL P + ++ NI+ G++ + PQ+ I+ I P + +G + L +++
Sbjct: 60 GLGWVLASGMRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVMGMVILWMTMG 119
Query: 234 IIVYQFSHSFLYGF 247
I+ Q+
Sbjct: 120 DILNQYQPIATQAL 133
>gi|114799957|ref|YP_759005.1| flagellar biosynthetic protein FliR [Hyphomonas neptunium ATCC
15444]
gi|114740131|gb|ABI78256.1| flagellar biosynthetic protein FliR [Hyphomonas neptunium ATCC
15444]
Length = 237
Score = 73.0 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/233 (20%), Positives = 106/233 (45%), Gaps = 5/233 (2%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
M+ ++ R+ + ++PG+ I + RL + + + + +
Sbjct: 1 MVMFMTVIARLSFVVFMMPGIGDQVISSRTRLFVLLGMAAAIAST--GVVAAPSAPGIGD 58
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L+ E+ +G G L+R+ L G+VI+ +IGL + + A+T ++++
Sbjct: 59 LVLLLGSEVVIGFGLGALLRLSVWMLTIAGTVIAQSIGLAQFLGVA-LEHEAQTVTSNML 117
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
+ G L ++H V L++ Y IP+G+ + + + L L+ P
Sbjct: 118 SLAGTTILLTANYHVAVVDGLMRLYTEIPLGEV--GQVSWPMIFDSFYSAMGFALMLAWP 175
Query: 189 FLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSH 241
F+ +++NI +G +NK +P + + F+ P+++G G + L +S+ ++ +
Sbjct: 176 FVAANLLYNICLGFINKALPSLMVAFVGAPFMVGAGVMLLAISVSGMLIIWKD 228
>gi|307947534|ref|ZP_07662867.1| putative type III secretion apparatus protein [Roseibium sp.
TrichSKD4]
gi|307769352|gb|EFO28580.1| putative type III secretion apparatus protein [Roseibium sp.
TrichSKD4]
Length = 267
Score = 72.2 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 5/238 (2%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQV-RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
L R M +++ + V R+ FA+A ++ + L+ Y
Sbjct: 21 VLATARPFGLAMTFVAFGWAHLNIGVLRMIFAIAIAMPVAIPLFSLEQSTIPELPYPYVL 80
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+++ E+F+G V G + + +G +I G TP L +I
Sbjct: 81 VLVKEIFIGGVFGWVASLPFTIAASSGHIIDGYRGGASGD--PDPTGGQVTPYAKLFLVI 138
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM--LQTTFMIMLRLSSPF 189
L ++ V + +Y P+ L L+ L +++P
Sbjct: 139 SLFLFANLNGFWIVTDTIYSTYEVWPMFDALPLERGVEPITIFNVLEGLVSSALVIATPL 198
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
L V ++ L K QI + ++ +G + L + I++ F + + +
Sbjct: 199 LLVMFVADLIFLLTTKFGKQINVSHLAFSVKNTIGIILLPVMCLILIRIFKNELSHMY 256
>gi|28628134|gb|AAO34618.1| HrcT [Erwinia chrysanthemi]
Length = 224
Score = 71.8 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 1/156 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ +L L V R+ C+ L+P S S I +R A+A ++V + + L +
Sbjct: 13 FIYALTLGVARLYPCLFLVPLFSFSIIKGMLRNAVAIAIALVPAGAIQQQM-LTTTITWP 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ EL +G + G+++ + + G++ G + + TPL +
Sbjct: 72 MLPALLLKELVIGLLLGVVLAMPFWLFESVGALFDNQRGALTGGQLNPALGSDATPLGHM 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN 163
+ + ++ L + L SY P L
Sbjct: 132 LKELFIMLLVLTIGFSGFTQLLWDSYRLWPALDFLP 167
>gi|329901845|ref|ZP_08272933.1| Type III secretion inner membrane protein [Oxalobacteraceae
bacterium IMCC9480]
gi|327548982|gb|EGF33598.1| Type III secretion inner membrane protein [Oxalobacteraceae
bacterium IMCC9480]
Length = 266
Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 91/249 (36%), Gaps = 3/249 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ I + M+++ L++ R + +LPG + R A+A ++ + +
Sbjct: 5 LLIDLQNTMVAMALVMPRSFVVLAILPGFGTRTLVGIARNSIALAIALPAWLPTYYFVKT 64
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
V+ L E +G + G+L+ + LQ GS++ T S S
Sbjct: 65 -GQVDYMLAVMLGFKEAGIGLMLGVLMALPIWALQSLGSILDTQRASTQVMSDNASFDAD 123
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTT 178
+ L +++ ++ + + +++SYG P + + +
Sbjct: 124 ASALGAMLVQAVVMVMIQAGLMTALVRIMIESYGLWPAFSLMPPFELGQMDVVLKRFGEF 183
Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
F + P L ++ + +I ++ + + IS+P LG L + + +
Sbjct: 184 FWHLAVYGGPVLIPLVLVDFTIAVIGIFASNLQVSAISSPIKSVLGLFILLVYWPTLAHY 243
Query: 239 FSHSFLYGF 247
S+ F
Sbjct: 244 ISYDFARVL 252
>gi|323191514|gb|EFZ76775.1| lateral flagellar export/assembly protein [Escherichia coli
RN587/1]
Length = 176
Score = 69.9 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ + L+ R+ + + +P L S + +VR+ ++A +I++ P + I +
Sbjct: 12 LALGLWFPFVRIMAFLRYMPVLDNSALTARVRIILSLALAIIITPLIPHPIPHDLLSLNS 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L + ++ G + GL+ + L LQ G ++S +G+++ S + T L L
Sbjct: 72 --LILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAEL 129
Query: 128 IGIIGLLALWVID 140
I + +L +
Sbjct: 130 INVYAILLFFGHG 142
>gi|254488003|ref|ZP_05101208.1| flagellar biosynthetic protein FliR [Roseobacter sp. GAI101]
gi|214044872|gb|EEB85510.1| flagellar biosynthetic protein FliR [Roseobacter sp. GAI101]
Length = 162
Score = 68.4 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 92 LGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVK 151
+ LQ TGS+ + + L+ +G + + ++ L H + L+
Sbjct: 1 MALQTTGSIAAQSTSLS--QILGGAAVEPIPAMGYILVFAALALAVTAGLHVKAASLLIY 58
Query: 152 SYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIP 211
SY T+P+GQ N ++ + + L++PF+ +++N+++G +NK +PQ+
Sbjct: 59 SYDTLPMGQFPNPSDLSEWGLAQTSHAMSLAFTLAAPFVILSLLYNLALGAINKAMPQLM 118
Query: 212 IYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ F+ P + G LC++ +++ + +
Sbjct: 119 VAFVGAPVITAGGLFILCIASPLLLGTWLSALDQYL 154
>gi|330720473|gb|EGG98777.1| Flagellar biosynthesis protein FliR [gamma proteobacterium
IMCC2047]
Length = 136
Score = 68.4 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 55/127 (43%)
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
L+ ++ +L ++ H V ++S+ +P+G E+ IF F
Sbjct: 1 MAVLSQFYLMLVMLMFVCMNGHLVVIEVFIESFKVMPVGYEVFDVGIFMQLAKWGAWMFA 60
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L ++ P L +V N + G++N+ PQ+ ++ + P + +G + + +++ V QF
Sbjct: 61 SALVIALPALCALLVVNFAFGIMNRAAPQLNVFALGFPVSMLVGLMIVFVTLTRFVPQFD 120
Query: 241 HSFLYGF 247
Sbjct: 121 KLAEQSL 127
>gi|237799999|ref|ZP_04588460.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022854|gb|EGI02911.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 264
Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 91/234 (38%), Gaps = 3/234 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ + L + R+ C++L+P Y+ VR ++V P + + N +
Sbjct: 10 ELILGMALAMARLVPCMLLVPAFCFKYLKGPVRYAVVAVVAMVPAPGISRALTSLNE-DW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ LG + G+L+ G+++ + G + + TPL
Sbjct: 69 FAIGGLLLKEVVLGTLLGMLLYAPFWMFASVGALLDSQRGALSGGQINPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN--FGNIFSSFVNMLQTTFMIMLR 184
L ++ + V + + SY P L + F+ L T M+
Sbjct: 129 LFQETLIMLVIVTGGLSTITQVIWDSYSVWPPTSWLPGMTADGLDIFLGQLNQTLQHMML 188
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++PF+ ++ ++ ++ Q+ + ++ P G FL + + ++
Sbjct: 189 YAAPFIALLLLIEAALAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 242
>gi|300310131|ref|YP_003774223.1| Type III secretion HprX protein [Herbaspirillum seropedicae SmR1]
gi|300072916|gb|ADJ62315.1| Type III secretion HprX protein [Herbaspirillum seropedicae SmR1]
Length = 262
Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 90/249 (36%), Gaps = 3/249 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + +++++ L+ RV C+++LPG ++ + + AMA S+ + +
Sbjct: 5 LLLDLQAVLVTMALVTPRVLVCLVILPGFGLNVLTGLAKNTAAMAISLPAALPTFLFVQR 64
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ +V E +G + G+L+ + +Q GS+ + + +
Sbjct: 65 TAP-DMLTTGVMVFKEAMIGLMFGVLMAIPLWVVQSIGSIFDSQRSPIQIQANNATVDRD 123
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTT 178
+ + +L+ +L + + L++SY P F V
Sbjct: 124 ASAVGALLLQAVVLVMVQAGMFAGMARILIESYAVWPAFTLAPPFEPGHFDVLVKRFGEL 183
Query: 179 FMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
++ +P L ++ ++ + + F S P +G L + L +
Sbjct: 184 LWYIVVYGAPVLIPLVLIEFGFAIVGVFASNLQVSFASAPVKSLVGLLIMLLYWSTFSHY 243
Query: 239 FSHSFLYGF 247
+ F +
Sbjct: 244 VAGDFAHLL 252
>gi|75906100|gb|ABA29442.1| putative type III secretion system protein [Candidatus Hamiltonella
defensa]
Length = 215
Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 75/196 (38%), Gaps = 4/196 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L L + R +++ P + + +R +A ++ + P + + L +
Sbjct: 7 WLTALGLAMARPLGVLLIFPVFTTHSLGSSLLRNGLLVAIALPITP-ITISSSLIHSHIL 65
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +M+EL +G G + ++ S+I T G + +++ + + +
Sbjct: 66 IHWCFAIMMELVIGVTIGFFAALPFWAIEMAASLIDTMRGATMASAINPTMGMQSSVFGI 125
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ--ELNFGNIFSSFVNMLQTTFMIMLR 184
L + + + + + + SY + G+ +FS F +
Sbjct: 126 LFSQVLSVLFLIAGGFNSLLRVIYGSYDLLYPGEKILFFGEKLFSFIKMQWGLMFELCFN 185
Query: 185 LSSPFLFFYIVFNISI 200
+ P L ++ ++S+
Sbjct: 186 FALPALLVMLITDLSL 201
>gi|330902018|gb|EGH33339.1| type III secretion protein SpaR/YscT/HrcT [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 196
Score = 67.2 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 2/172 (1%)
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
L++ E LG + GLL+ G+++ + G + + TPL L
Sbjct: 3 IGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGELF 62
Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRLS 186
++ + + + + SY P + N F+ L T ML +
Sbjct: 63 QETLIMLVILTGGLSLMTQIIWDSYSVWPPTAWMPGMNAGGLDVFLEQLNQTMQHMLLYA 122
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
+PF+ ++ + ++ Q+ + ++ P G FL + + ++
Sbjct: 123 APFIALLLLIEAAFAIIGLYAQQLNVSILAMPAKSMAGLAFLLIYLPTLLEL 174
>gi|13363195|dbj|BAB37146.1| type III secretion protein EpaR1 [Escherichia coli O157:H7 str.
Sakai]
Length = 155
Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 3/142 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 17 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELST---LNEI 73
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L E+ +G L+ GS I G L +++ + + + L L
Sbjct: 74 DIALLAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 133
Query: 128 IGIIGLLALWVIDFHHQVFYAL 149
+ + + L
Sbjct: 134 FNLFSAAVYLTNGGLNFILETL 155
>gi|256370975|ref|YP_003108799.1| flagellar biosynthesis pathway protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007559|gb|ACU53126.1| putative flagellar biosynthesis pathway protein [Acidimicrobium
ferrooxidans DSM 10331]
Length = 246
Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 72/234 (30%), Gaps = 10/234 (4%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+++ + +++ +++ +P +L A+ + I
Sbjct: 8 GSVLAFLIATAHALGFVVIAAPFALATVPRTAQLALAVGMGMA-----GAAIHTALPATT 62
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ G + G + GS I G S+
Sbjct: 63 PALIGQLAWAAATGALIGFVALAAISIGSQAGSFIGLLGGFVTPPSLTPLAFGEVPVTGD 122
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
L G+I + +V V + ++ N + V + TF L ++
Sbjct: 123 LYGMIWAVLFFVSGADVVVLRGFY-----LASDASVHLANTATVIVQSVTLTFAAGLEVA 177
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
+P + I +L K+ PQ+ P I L + + +S+ +I + F
Sbjct: 178 APVIAVMFFAQIVAAVLTKVAPQLQPLGFLFPLEILLSLIMMVVSLPVIPHLFD 231
>gi|15803387|ref|NP_289420.1| type III secretion apparatus protein [Escherichia coli O157:H7
EDL933]
gi|12517365|gb|AAG57979.1|AE005515_1 type III secretion apparatus protein [Escherichia coli O157:H7 str.
EDL933]
Length = 150
Score = 61.8 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 3/142 (2%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++ + L CR+ LLP + IP VR + S L+ + +N
Sbjct: 12 LLAATALGFCRLAPTFYLLPFFASGNIPTVVRHPIIIVVSCALVQHYHYELST---LNEI 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L E+ +G L+ GS I G L +++ + + + L L
Sbjct: 69 DIALLAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSELARL 128
Query: 128 IGIIGLLALWVIDFHHQVFYAL 149
+ + + L
Sbjct: 129 FNLFSAAVYLTNGGLNFILETL 150
>gi|323935779|gb|EGB32082.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli E1520]
Length = 142
Score = 61.4 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 2/125 (1%)
Query: 113 MGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV 172
M + + + L L + + + L +SY P G
Sbjct: 1 MDPATGVDTSELARLFNLFSAAVYLTKGGMNFILETLWQSYNLWPSGNFNFPK--LEPLF 58
Query: 173 NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
+ + + +SP + + +GLL + Q+ + IS L L L +
Sbjct: 59 SYINNIMTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYF 118
Query: 233 EIIVY 237
I+
Sbjct: 119 GPILA 123
>gi|266618908|ref|ZP_06111846.1| conserved domain protein [Clostridium botulinum Bf]
gi|263528672|gb|EEZ28381.1| conserved domain protein [Clostridium botulinum Bf]
Length = 150
Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 1/151 (0%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
+ ++ LI R+ ++P P+ ++ A+ + +L+ + D +
Sbjct: 1 MISAAYATAIILISFRLFIFFSMVPIFFPKGTPVIGKVSLALIIAYMLVGSI-DIRSINT 59
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
N ++ E+ G + G + + ++ G+++ +G + T S + T
Sbjct: 60 INNSTALIFNIVNEILAGAILGYITNAAFVCARYAGNMMDLQVGFAMMTMFDPSTNSNVT 119
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYALVKSY 153
L ++ + ++ID HH + + +
Sbjct: 120 FLERILYWFSTIVFFLIDGHHMLIKGFSRKF 150
>gi|116514993|ref|YP_802622.1| hypothetical protein BCc_050 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256847|gb|ABJ90529.1| type III protein export, membrane component [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 266
Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 3/217 (1%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
+ I+ RV S + L I ++ S +L+PF+ +N +
Sbjct: 17 IIFIMARVFSLLFYLKIFQNIKINYFTKIIIIYLLSSLLIPFISVY---KNNFCTIDFFL 73
Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
+ + ++F+G V G LI+ GL F G + S IGL+ + ++L I
Sbjct: 74 IFLNQIFIGIVLGFLIKNVLFGLFFIGEIFSLQIGLSSLNFFYFDKNTYSLIFSNLFSIF 133
Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLF 191
L ++ + H ++ L+ S+ P+ + + IF VN L F + P LF
Sbjct: 134 FLFTFFICNMHLKLLVLLIHSFEIYPLNNFIFYKKIFFYIVNFLNIIFFQSVSFILPILF 193
Query: 192 FYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFL 228
F+++ I+ +NKL+P++ + + G L
Sbjct: 194 FFLILYITYIFINKLIPKVSFFSSFMIIVFFFGMFIL 230
>gi|318607484|emb|CBY28982.1| type III secretion inner membrane protein
(YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar
export components) [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 131
Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQEL-NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFY 193
+ + V AL SY +P G + I + Q + + L + P +
Sbjct: 1 MFLISGGFNLVLTALYSSYEILPAGSGIQPTSAILQFLQSEWQLMYELCLSFALPAMLVM 60
Query: 194 IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
++ ++S+GL+N+ Q+ ++F++ P L L L +S+ ++ +
Sbjct: 61 VLADLSLGLINRSSQQLNVFFLAMPIKSALALLLLLISLPYALHHY 106
>gi|149926084|ref|ZP_01914347.1| flagellar biosynthesis protein P [Limnobacter sp. MED105]
gi|149825372|gb|EDM84583.1| flagellar biosynthesis protein P [Limnobacter sp. MED105]
Length = 266
Score = 59.1 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 3/239 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ L + R S ++ P LS +++ + F T+ +
Sbjct: 14 QFLAVLSYYLPRTVSFMVFFPLLSKGLSSSLIKMSVGSVLVLYPA-FASTTLYFSSMNPP 72
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
A+ + E+ LG + GL I + G+++ G SDS E P+
Sbjct: 73 AFTLITFLSEVVLGALLGLTIAFPYYAFKAFGALVDVYRGATFAAQATGSDSGEELPIEQ 132
Query: 127 LIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG--QELNFGNIFSSFVNMLQTTFMIMLR 184
L G++ ++ H V L+ SY +P G L+ + ++ + M +
Sbjct: 133 LFGLLFAALIFAGPGLHAVSVHLLNSYLVMPPGTLTLLSLDSWLTTMLRMAADHITFSVL 192
Query: 185 LSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
LS P L + + + +++ Q+ +Y + G L + + F
Sbjct: 193 LSGPVLIAILAVELVVEIISAFTQQLQVYSLEFGLRSVFGIAALITLMFFAEQEILTMF 251
>gi|289606786|emb|CBI61015.1| unnamed protein product [Sordaria macrospora]
Length = 150
Score = 58.7 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 58/147 (39%), Gaps = 2/147 (1%)
Query: 3 ISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQN 62
++ E + +L + RVG+ ++ P +P+QVR+ + A ++++L +
Sbjct: 6 LAVEPQLWALLFTMVRVGAAFIVAPVFGAVAMPVQVRVLLSGAIAVLVL--HAQAFAIPT 63
Query: 63 FVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAET 122
V + E +G G ++++ VI ++G+ + +
Sbjct: 64 EVFSLTTFLSIAAEGLVGLAIGFVLQIAFAAPLIAAEVIGMSMGIGFAAMVDPQNGAQSP 123
Query: 123 PLNSLIGIIGLLALWVIDFHHQVFYAL 149
L + + ++ L +D H + +
Sbjct: 124 ALGTFLSVLLTLLFLSLDGHLILIDLI 150
>gi|320103853|ref|YP_004179444.1| flagellar biosynthetic protein FliR [Isosphaera pallida ATCC 43644]
gi|319751135|gb|ADV62895.1| flagellar biosynthetic protein FliR [Isosphaera pallida ATCC 43644]
Length = 267
Score = 58.7 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 66/195 (33%), Gaps = 8/195 (4%)
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
++ V ++ L+ +EL G V GL + G +++ GL+ + +
Sbjct: 71 ESSVALEHWGVLLPLELVYGGVLGLGTGWVVAAARRAGDLLAVQAGLSPDVWLAPNGDDP 130
Query: 121 -ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQEL-------NFGNIFSSFV 172
+PL L G + +D + AL + P G ++ + +
Sbjct: 131 DASPLGRLHGWTAVAIFITLDGPLALTRALWRGLRQHPPGTWWNAPLSTEPLADLLAVLL 190
Query: 173 NMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSI 232
N + + L L++ IV + + + +P + + P L L+
Sbjct: 191 NQICHALTLCLELAAIPAAALIVAAVGLAWTARALPHVGALAATMPLRFAAVVAALLLTG 250
Query: 233 EIIVYQFSHSFLYGF 247
E +F G
Sbjct: 251 EQFASSILAAFRAGL 265
>gi|15594618|ref|NP_212407.1| flagellar biosynthesis protein (fliR) [Borrelia burgdorferi B31]
gi|3913681|sp|Q44907|FLIR_BORBU RecName: Full=Flagellar biosynthetic protein fliR
gi|1165258|gb|AAA85597.1| FliR [Borrelia burgdorferi]
gi|1185061|gb|AAB58970.1| flagellar export protein [Borrelia burgdorferi]
gi|2688193|gb|AAC66675.1| flagellar biosynthesis protein (fliR) [Borrelia burgdorferi B31]
Length = 269
Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 18 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 73
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G S IGL + ++ +
Sbjct: 74 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 133
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 134 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NSGFVKLLLMSFGFLFE 187
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 188 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 247
Query: 241 HSFLYGF 247
Sbjct: 248 RVIELSL 254
>gi|225552126|ref|ZP_03773066.1| flagellar biosynthetic protein FliR [Borrelia sp. SV1]
gi|225371124|gb|EEH00554.1| flagellar biosynthetic protein FliR [Borrelia sp. SV1]
Length = 262
Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G S IGL + ++ +
Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NSEFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|224531723|ref|ZP_03672355.1| flagellar biosynthetic protein FliR [Borrelia valaisiana VS116]
gi|224511188|gb|EEF81594.1| flagellar biosynthetic protein FliR [Borrelia valaisiana VS116]
Length = 262
Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/247 (17%), Positives = 82/247 (33%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + T L N + +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIIVEKIKVTYPLDNMFS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+++ E LG + + + G S IGL I ++ +
Sbjct: 67 VLILLGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANVFDIFSEEDSMVISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NSEFIKLLFMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKASPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|223888958|ref|ZP_03623549.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 64b]
gi|223885774|gb|EEF56873.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 64b]
Length = 262
Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G S IGL + ++ +
Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHL------ANMRNSEFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKASPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|224533795|ref|ZP_03674383.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi CA-11.2a]
gi|224513088|gb|EEF83451.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi CA-11.2a]
Length = 262
Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G + IGL + ++ +
Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFANQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NSEFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|119391680|emb|CAJ46465.1| RhcT protein [Bradyrhizobium japonicum]
gi|119391684|emb|CAJ46468.1| RhcT protein [Bradyrhizobium liaoningense]
gi|145207710|emb|CAJ90701.1| RhcT protein [Bradyrhizobium japonicum]
gi|145207714|emb|CAJ90704.1| RhcT protein [Bradyrhizobium japonicum]
gi|145207718|emb|CAJ90707.1| RhcT protein [Bradyrhizobium japonicum]
Length = 165
Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 2/154 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + L R +++LP + I +R +A + L + +
Sbjct: 12 LVQGSIEFVAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLAQIKLGLQA 71
Query: 61 QNFVNRAYYSKLV-MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDS 118
+ R ++ + E+F+G + G+L+ + +Q G +I T G+ + +
Sbjct: 72 LDPNTRLVSVTMLGVKEVFVGLMLGILLSIPLWSIQAVGDIIDTQRGISSQVAGEDPATH 131
Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKS 152
T +G+ + ++ + L S
Sbjct: 132 SQATGTGLFLGVTAVTIFVLVGGLQTMVSGLYGS 165
>gi|221217760|ref|ZP_03589228.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 72a]
gi|224533204|ref|ZP_03673804.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi WI91-23]
gi|225550158|ref|ZP_03771118.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 118a]
gi|221192437|gb|EEE18656.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 72a]
gi|224511931|gb|EEF82332.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi WI91-23]
gi|225369270|gb|EEG98723.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 118a]
Length = 262
Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G S IGL + ++ +
Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NSEFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|195941373|ref|ZP_03086755.1| flagellar biosynthesis protein (fliR) [Borrelia burgdorferi 80a]
Length = 262
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G S IGL + ++ +
Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +V+ H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVVGIHDSVLNIRVEHLVNMR------NSEFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|218249562|ref|YP_002374796.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi ZS7]
gi|226321591|ref|ZP_03797117.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi Bol26]
gi|218164750|gb|ACK74811.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi ZS7]
gi|226232780|gb|EEH31533.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi Bol26]
gi|312149312|gb|ADQ29383.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi N40]
Length = 262
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G S IGL + ++ +
Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NSGFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|216264829|ref|ZP_03436821.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 156a]
gi|225549087|ref|ZP_03770062.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 94a]
gi|215981302|gb|EEC22109.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 156a]
gi|225370313|gb|EEG99751.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 94a]
Length = 262
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G S IGL + ++ +
Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHL------ANMRNSEFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|145207706|emb|CAJ90698.1| RhcT protein [Bradyrhizobium sp. MSDJ 5327]
Length = 165
Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 2/154 (1%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
+ + + L R +++LP + I +R +A + L + +
Sbjct: 12 LVQGSIEFVAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLAQIKLGLQA 71
Query: 61 QNFVNRAYYSKLV-MVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL-NLQTSMGISDS 118
+ R ++ + E+F+G + G+L+ + +Q G +I T G+ + +
Sbjct: 72 LDPNTRLVSVTMLGVKEVFVGLMLGILLSIPLWSIQAVGDIIDTQRGISSQVAGEDPATH 131
Query: 119 LAETPLNSLIGIIGLLALWVIDFHHQVFYALVKS 152
T +G+ + ++ + L S
Sbjct: 132 SQATGTGLFLGVTAVTIFVLVGGLQTMVGGLYGS 165
>gi|307944386|ref|ZP_07659727.1| Bacterial export protein, family 1 [Roseibium sp. TrichSKD4]
gi|307772732|gb|EFO31952.1| Bacterial export protein, family 1 [Roseibium sp. TrichSKD4]
Length = 280
Score = 56.0 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 81/213 (38%), Gaps = 7/213 (3%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLS-MSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFV 64
E++ +L L + R I + P S + +++ +A S + P ++ ++
Sbjct: 18 ELLGATLILSIARTSPLIFVNPIFSRHQFQSGFLQMSIIIAISAPIFPTVFIQLNAYGIP 77
Query: 65 NRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPL 124
LV+ E+ +G V +L+ V + G +I A+G + + ++ +
Sbjct: 78 TPFLLVVLVLKEIVIGLVIAILLSVPFWAVDSAGKIIENAVGFSPAS----EGEISGSIG 133
Query: 125 NSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGN--IFSSFVNMLQTTFMIM 182
N + +L + ++ + + KS P + I V +LQ
Sbjct: 134 NLFLTFAFVLLFFTGLYYELILDPIYKSIIVWPPFAAFPSSSDTILLDLVEVLQQISESS 193
Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFI 215
++ P + ++ ++ G + K I F+
Sbjct: 194 FIIALPIVALLLLSDLIAGFVLKYTQAISPSFL 226
>gi|312148381|gb|ADQ31040.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi JD1]
Length = 262
Score = 56.0 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 85/247 (34%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIKIIYPLDNMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ +++ E LG + + + G S IGL + ++ +
Sbjct: 67 ALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL ++I H V V+ + + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFLIGIHDSVLNIRVEHL------ANMRNSEFVNLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|51587260|emb|CAE53650.1| putative HrcT [Pseudomonas gingeri]
Length = 178
Score = 55.7 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+M+ + L + R+ C++L+P ++ +R A +++ P + + L+N
Sbjct: 35 ELMLGMGLAMARILPCLILVPAFCFKHLKGPLRYGVTCALALIPAPSIGRALALEN-DAW 93
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ L++ E LG + GLL+ G+++ + G + S TPL
Sbjct: 94 FTIAGLLLKESVLGILLGLLLYAPFWMFATVGALLDSQRGALSGGQLNPSLGPDATPLGE 153
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L ++ + + + +
Sbjct: 154 LFQEALIMLVILSGGLSLITQLIWD 178
>gi|51598533|ref|YP_072721.1| flagellar biosynthesis protein [Borrelia garinii PBi]
gi|51573104|gb|AAU07129.1| flagellar biosynthesis protein [Borrelia garinii PBi]
Length = 262
Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 19/236 (8%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ I+ R+ + P S I F++ S++++ + L + ++ +
Sbjct: 11 FTILPILVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIVVEKIRIIYPLDSMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ E LG + + + G S IGL + ++ +
Sbjct: 67 MLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NLEFIKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236
>gi|219684667|ref|ZP_03539610.1| flagellar biosynthetic protein FliR [Borrelia garinii PBr]
gi|219672029|gb|EED29083.1| flagellar biosynthetic protein FliR [Borrelia garinii PBr]
Length = 262
Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 19/236 (8%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ I+ R+ + P S I + F++ S++++ + L + ++ +
Sbjct: 11 FTILPILVRIFMFLKFSPFFSTIKI-GYLNFFFSLILSVIIVEKIRIIYPLDSMLS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ E LG + + + G S IGL + ++ +
Sbjct: 67 MLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NLEFIKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 236
>gi|224534308|ref|ZP_03674886.1| flagellar biosynthetic protein FliR [Borrelia spielmanii A14S]
gi|224514410|gb|EEF84726.1| flagellar biosynthetic protein FliR [Borrelia spielmanii A14S]
Length = 266
Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/247 (16%), Positives = 83/247 (33%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N ++ +
Sbjct: 15 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIIVEKIKIIYPLDNMLS---F 70
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+++ E LG + + + G S IGL + ++ +
Sbjct: 71 VLILLGEAILGLIQAFFVTIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 130
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 131 YLFLLLFLSSDFLLRFFVIGIHDSVLKIRVEHLVNMR------NTEFIKLLLMSFGFLFE 184
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 185 KALLISFPVLALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 244
Query: 241 HSFLYGF 247
Sbjct: 245 RVIELSL 251
>gi|207108608|ref|ZP_03242770.1| flagellar biosynthesis protein FliR [Helicobacter pylori
HPKX_438_CA4C1]
Length = 120
Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 49/113 (43%)
Query: 135 ALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
L + FHHQ+ + S +P+GQ + + + V F+I ++ P L +
Sbjct: 1 MLLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLFVIGFSMAFPILCLVL 60
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ +I G++ K PQ + I P I +G + + L I+ +F F
Sbjct: 61 LSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRFKEEISLAF 113
>gi|216263839|ref|ZP_03435833.1| flagellar biosynthetic protein FliR [Borrelia afzelii ACA-1]
gi|215979883|gb|EEC20705.1| flagellar biosynthetic protein FliR [Borrelia afzelii ACA-1]
Length = 262
Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 81/247 (32%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N + +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIIVEKIKIIYPLDNMFS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ E LG + + + G S IGL + ++ +
Sbjct: 67 VLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +V+ H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVVGIHDSVLNIRVEHLVNMR------NSEFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|111115098|ref|YP_709716.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
gi|110890372|gb|ABH01540.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
Length = 262
Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 81/247 (32%), Gaps = 19/247 (7%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ ++ R+ + P S I F++ S++++ + L N + +
Sbjct: 11 FTILPVLVRIFMFLKFSPFFSTIKI-GYFNFFFSLILSVIIVEKIKIIYPLDNMFS---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ E LG + + + G S IGL + ++ +
Sbjct: 67 VLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 126
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +V+ H V V+ + + F
Sbjct: 127 YLFLLLFLSSDFLLRFFVVGIHDSVLNIRVEHLVNMR------NSEFVKLLLMSFGFLFE 180
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 181 KALLISFPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAISSK 240
Query: 241 HSFLYGF 247
Sbjct: 241 RVIELSL 247
>gi|203284194|ref|YP_002221934.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
gi|201083637|gb|ACH93228.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
Length = 262
Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ I R+ + P S + + F++ SI+++ + L N +
Sbjct: 11 FVVLPIFIRIFIFLRFSPFFSTIKM-GYLNFFFSLILSIIVVDKVNVVYPLNNLTA---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+++ E LG + + + G S +GL + ++ +
Sbjct: 67 VLILLGEAILGLIQAFFVSIIFNVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFT 126
Query: 130 IIGLLALWVIDFHHQVFYALVK---SYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ L+ DF + V + + F L +S
Sbjct: 127 YLFLIVFLSNDFLFRFLVIGVYDSVLNVRVENMVNIKNYEFIKLVFYSFAILFEKSLIMS 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ + +G+++K PQI + IS +GLG + L ++ V
Sbjct: 187 LPILGVLLLLYLILGIISKTSPQINLLMISFAISLGLGLIVLYITFPSFVISVKRVIELS 246
Query: 247 F 247
Sbjct: 247 L 247
>gi|203287733|ref|YP_002222748.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
gi|201084953|gb|ACH94527.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
Length = 262
Score = 53.0 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 78/241 (32%), Gaps = 7/241 (2%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ I R+ + P S + + F++ SI+++ + L N +
Sbjct: 11 FVVLPIFIRIFIFLRFSPFFSTIKM-GYLNFFFSLILSIIVVDKVNVVYPLNNLTA---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+++ E LG + + + G S +GL + ++ +
Sbjct: 67 VLILLGEAILGLIQAFFVSIIFNVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFT 126
Query: 130 IIGLLALWVIDFHHQVFYALVK---SYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ L+ + DF + V + + F L +S
Sbjct: 127 YLFLIVFLLNDFLFRFLVIGVYDSVLNVRVENMVNIKNYEFIKLVFYSFAILFEKSLIMS 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
L ++ + +G+++K PQI + IS +GLG + L ++ V
Sbjct: 187 LSILGVLLLLYLILGIISKTSPQINLLMISFAISLGLGLIVLYITFPSFVISVKRVIELS 246
Query: 247 F 247
Sbjct: 247 L 247
>gi|219685752|ref|ZP_03540563.1| flagellar biosynthetic protein FliR [Borrelia garinii Far04]
gi|219672691|gb|EED29719.1| flagellar biosynthetic protein FliR [Borrelia garinii Far04]
Length = 269
Score = 53.0 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 19/236 (8%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
++ I+ R+ + P S I F++ S++++ + L + ++ +
Sbjct: 18 FTILPILVRIFMFLKFSPFFSAIKI-GYFNFFFSLILSVIIVEKIKIIYPLDSMLS---F 73
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
++ E LG + + + G S IGL + ++ +
Sbjct: 74 MLILSGEAILGLIQAFFVSIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFA 133
Query: 130 IIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ LL +VI H V V+ + + F
Sbjct: 134 YLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NLEFIKLLLMSFGFLFE 187
Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236
L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 188 KALLISFPILALLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLA 243
>gi|47570847|ref|ZP_00241386.1| flagellar biosynthetic protein fliR, putative [Bacillus cereus
G9241]
gi|47552486|gb|EAL10998.1| flagellar biosynthetic protein fliR, putative [Bacillus cereus
G9241]
Length = 106
Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ F CR+ S + LP S IP ++ F +A SI + D +D+ +
Sbjct: 7 AATFFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSI----TVADQVDVSHIKTTWDV 62
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM 113
+ ++ +G ++ + + G ++ IGL+ +
Sbjct: 63 AAYAGTQIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQAKFV 106
>gi|51587300|emb|CAE53680.1| putative HrcT [Pseudomonas fluorescens bv. V]
Length = 143
Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
M SL + + R+ +L+P +I ++R M +++ P + + Q++ +
Sbjct: 1 MPSLVVAMARIYPVAILVPAFCFQHIKGRLRNVIVMVMALIPTPGIHAAMSGQDY-SVLM 59
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
LV+ E+ LG + G L+ + + G+++ G P
Sbjct: 60 LIGLVLKEVALGFLLGTLLAMPFWMFESVGALLDNQRGALGGRPTQPFAGSGRHP 114
>gi|187918147|ref|YP_001883710.1| flagellar biosynthetic protein FliR [Borrelia hermsii DAH]
gi|119860995|gb|AAX16790.1| flagellar biosynthetic protein FliR [Borrelia hermsii DAH]
Length = 262
Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 7/241 (2%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ + R+ + P + + + FA SI+++ + L N + +
Sbjct: 11 FVVLPVFVRIFLFLRFSPFFATIKM-GYLNFFFAFILSIIVVDKINVVYPLDNLIA---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ E LG + + + G S +GL + ++ +
Sbjct: 67 ALILAGEAVLGLIQAFFVSIIFSVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFT 126
Query: 130 IIGLLALWVIDFHHQVFYALVK---SYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ LL +F + F V + + F L +S
Sbjct: 127 YLFLLLFLSNNFLLRFFMIGVHDSVLNVRVENMVNIRNYEFIKLIFYSFAVLFEKALVMS 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ + +G+L+K PQI + IS +GLG + L + +V
Sbjct: 187 LPILGVLLLLYLILGILSKTSPQINLLMISFAVSLGLGLIVLYICFPSLVMSIKRVIELA 246
Query: 247 F 247
Sbjct: 247 L 247
>gi|119953072|ref|YP_945281.1| flagellar biosynthetic protein FliR [Borrelia turicatae 91E135]
gi|119861843|gb|AAX17611.1| flagellar biosynthetic protein FliR [Borrelia turicatae 91E135]
Length = 262
Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 7/241 (2%)
Query: 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYY 69
+ + R+ + P + + + FA+ SI+++ + L N + +
Sbjct: 11 FVILPVFVRIFLFLRFSPFFATIRMS-YLNFFFALILSIIVVDKINVVYPLDNLIA---F 66
Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
+ ++ E LG + + + G S +GL + ++ +
Sbjct: 67 TLILAGEAILGLIQAFFVSIIFSVFHLLGFFFSNQMGLAYANIFDVFAEEDNLVISQIFT 126
Query: 130 IIGLLALWVIDFHHQVFYALVK---SYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLS 186
+ LL + + F V + + F L +S
Sbjct: 127 CLFLLLFLSNNVLLRFFMIGVHDSVLNVRVENMVNIKNYEFIELMFYSFVILFEKALIIS 186
Query: 187 SPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246
P L ++ + +G+L+K PQI + IS +GLG + L + +V
Sbjct: 187 LPILGVLLLLYLILGILSKTAPQINLLMISFAVSLGLGLIILYIGFPSLVMSVKRVIELA 246
Query: 247 F 247
Sbjct: 247 L 247
>gi|218670290|ref|ZP_03519961.1| flagellar biosynthesis protein FliR [Rhizobium etli GR56]
Length = 62
Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M P+ +++LFL+ CR+G C++ LPG S + +P Q+R+ A A SI +LP LWDT+
Sbjct: 1 MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPEQLRVFIAGALSIAVLPLLWDTVYP 60
Query: 61 QN 62
Sbjct: 61 AV 62
>gi|255018673|ref|ZP_05290799.1| flagellar biosynthesis protein FliR [Listeria monocytogenes FSL
F2-515]
Length = 141
Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 44/141 (31%)
Query: 48 IVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL 107
+ + + +D+ V E+ G L+ + + + G +I +G
Sbjct: 1 MAISIPVATWVDVSGITTLPDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGF 60
Query: 108 NLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167
+ + S + +++ ++ + + Y L+KS+ L
Sbjct: 61 SQVNLIDPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGF 120
Query: 168 FSSFVNMLQTTFMIMLRLSSP 188
+ L + ++ P
Sbjct: 121 IDLLLGTLGFALASAVSIALP 141
>gi|226320573|ref|ZP_03796133.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 29805]
gi|226233992|gb|EEH32713.1| flagellar biosynthetic protein FliR [Borrelia burgdorferi 29805]
Length = 200
Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 15/190 (7%)
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
++ +++ E LG + + + G S IGL + ++
Sbjct: 2 LSFALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQ 61
Query: 127 LIGIIGLLA---------LWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177
+ + LL +VI H V V+ + +
Sbjct: 62 IFAYLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMR------NSEFVKLLLMSFGF 115
Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
F L +S P L ++F + +G+L+K PQI + IS + LG L L + +
Sbjct: 116 LFEKALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFPSLAI 175
Query: 238 QFSHSFLYGF 247
Sbjct: 176 SSKRVIELSL 185
>gi|321399655|emb|CBJ44657.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-J5-327]
Length = 153
Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 60/145 (41%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+M+ + L + R+ C+ML+P Y+ +R A ++V P + + Q N
Sbjct: 10 ELMLGIALAMARILPCMMLVPAFCFKYLKGPLRYAVTCAVAMVPAPSIGRVLSGQ-HENW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ LG + GLL+ + G+++ + G + S TPL
Sbjct: 69 LMIGGLLLKEMVLGVLLGLLLYMPFWMFATVGALLDSQRGALSGGQINPSLGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L+ + ++ + + + +
Sbjct: 129 LLQEVLIMLVILSGGLSLITQLIWD 153
>gi|51587308|emb|CAE53686.1| putative HrcT [Pseudomonas fluorescens bv. II]
Length = 175
Score = 48.3 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 33 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 91
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 92 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGGDTTPLGLL 151
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ +L L + +
Sbjct: 152 FKEMTILLLVTTLGIGTLTQLIWD 175
>gi|51587256|emb|CAE53647.1| putative HrcT [Pseudomonas salomonii]
Length = 152
Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ SL + + R+ C L+ +I R A +++ P + T Q F
Sbjct: 9 YLPSLLIGMARIYPCAFLVAAFCFQHIRGMPRHTIVAALALLPAPGIHATFADQEFSTLM 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
S LV+ E LG + G+L+ + + G+++ G + S TP+ L
Sbjct: 69 -LSALVLKEAALGTLLGVLLSMPFWLFEAVGALLDNQRGALAGGQLNPSLGPDATPIGHL 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ + L + +
Sbjct: 128 FKELTIFLLMATLGLGALTQLIWD 151
>gi|284810389|gb|ADB95988.1| putative HrcT [Pseudomonas cichorii]
gi|284810393|gb|ADB95991.1| putative HrcT [Pseudomonas cichorii]
gi|284810401|gb|ADB95997.1| putative HrcT [Pseudomonas cichorii]
gi|284810405|gb|ADB96000.1| putative HrcT [Pseudomonas cichorii]
Length = 146
Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++L + + R+ C+ L+P + + + +R +A ++ +P + ++ Q +
Sbjct: 10 SESIIALTIGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPSIRASLTGQTL-D 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L++ E +G + GLL+ + + G + G + + + + L
Sbjct: 69 WLDLTALLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELG 128
Query: 126 SLIGIIGLLALWVIDFH 142
++ + +L + + +
Sbjct: 129 HMLKQVMILLMILGGGY 145
>gi|284810365|gb|ADB95970.1| putative HrcT [Pseudomonas cichorii]
gi|284810369|gb|ADB95973.1| putative HrcT [Pseudomonas cichorii]
gi|284810373|gb|ADB95976.1| putative HrcT [Pseudomonas cichorii]
gi|284810377|gb|ADB95979.1| putative HrcT [Pseudomonas cichorii]
gi|284810381|gb|ADB95982.1| putative HrcT [Pseudomonas cichorii]
Length = 144
Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++L + + R+ C+ L+P + + + +R +A ++ +P + +++ Q+ +
Sbjct: 10 SESIIALTVGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPAIRESLAGQSL-D 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L++ E +G + GLL+ + + G + G + + + + L
Sbjct: 69 WLDLTSLLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELG 128
Query: 126 SLIGIIGLLALWVIDF 141
++ + +L + +
Sbjct: 129 HMLKQVMILLMILGGG 144
>gi|321399838|emb|CBJ44675.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-J5-721]
Length = 153
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 1/144 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+M+ + L + R+ C+ML+P Y+ +R A ++V P + + Q N
Sbjct: 10 ELMLGIALAMARILPCMMLVPAFCFKYLKGPLRYAVTCAVAMVPAPSIGRVLSGQ-HENW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ LG + GLL+ + G+++ + G + S TPL
Sbjct: 69 LMIGGLLLKEMVLGVLLGLLLYMPFWMFATVGALLDSQRGALSGGQINPSLGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALV 150
L+ + ++ + + + +
Sbjct: 129 LLQEVLIMLVILSGGLSLITQLIW 152
>gi|51587264|emb|CAE53653.1| putative HrcT [Pseudomonas blatchfordae]
Length = 148
Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C L+ +I R M +++ P + ++ Q +
Sbjct: 5 EYLPSLLVAMARIYPCAFLVAAFCFQHIRGMPRHTIVMVLALLPAPAVHAALEGQEL-SA 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ EL LG + G+L+ + + G+++ G + S TP+
Sbjct: 64 LIIGGLVLKELALGILMGVLLSMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPVGH 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L + + L + +
Sbjct: 124 LFKQLAIFLLMASLGLGALTQLIWD 148
>gi|284810345|gb|ADB95955.1| putative HrcT [Pseudomonas cichorii]
gi|284810349|gb|ADB95958.1| putative HrcT [Pseudomonas cichorii]
gi|284810353|gb|ADB95961.1| putative HrcT [Pseudomonas cichorii]
gi|284810357|gb|ADB95964.1| putative HrcT [Pseudomonas cichorii]
gi|284810361|gb|ADB95967.1| putative HrcT [Pseudomonas cichorii]
Length = 144
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++L + + R+ C+ L+P + + + +R +A ++ +P + ++ Q +
Sbjct: 10 SESIIALTIGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPSIRASLTGQTL-D 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L++ E +G + GLL+ + + G + G + + + + L
Sbjct: 69 WLDLTALLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGQINPALGDNTSELG 128
Query: 126 SLIGIIGLLALWVIDF 141
++ + +L + +
Sbjct: 129 HMLKQVMILLMILGGG 144
>gi|321399627|emb|CBJ44636.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTE-48-204]
gi|321399631|emb|CBJ44639.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTE-48-205]
Length = 153
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+M+ + L + R+ C+ML+P Y+ +R A ++V P + + Q N
Sbjct: 10 ELMLGIALAMARILPCMMLVPAFCFKYLKGPLRYAVTCAVAMVPAPSIGRVLSGQ-HENW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E+ LG + GLL+ + G+++ + G + S TPL
Sbjct: 69 LMIGGLLLKEMVLGVLLGLLLYMPFWMFATVGALLDSQRGALSGGQINPSLGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYAL 149
L+ + ++ + + + +
Sbjct: 129 LLQEVLIMLVILSGGLSLITQLI 151
>gi|266618907|ref|ZP_06111845.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf]
gi|263528671|gb|EEZ28380.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf]
Length = 413
Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 200 IGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
+GL+ + VPQ+ I + P I +G ++ + + + +F
Sbjct: 1 MGLVARTVPQLNIMILGLPIKILVGLTAFVFALPLFLKVLNSAF 44
>gi|167948775|ref|ZP_02535849.1| flagellar biosynthesis protein FliR [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 87
Score = 46.8 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ + + + R+G+ +M P S +P++ RL A+ + + P L +
Sbjct: 9 DAWIGAWLWPLLRIGAMLMAAPVFSSRQVPVRFRLALAVFITWAVAPNLPPMPSIDVIGY 68
Query: 66 RAYYSKLVMVELFLGCVHGLL 86
+++ ++ +G V G L
Sbjct: 69 PG--FIIMLQQILIGVVMGFL 87
>gi|315140170|gb|ADT81060.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L+ EL LG + G+ + + + G+++ G + + + TPL
Sbjct: 71 SLAGLMFKELVLGFLLGVQLTMPFWLYESVGALLDNQRGELIGGQLNPALGSDTTPLG 128
>gi|284810385|gb|ADB95985.1| putative HrcT [Pseudomonas cichorii]
gi|284810397|gb|ADB95994.1| putative HrcT [Pseudomonas cichorii]
gi|284810409|gb|ADB96003.1| putative HrcT [Pseudomonas cichorii]
gi|284810413|gb|ADB96006.1| putative HrcT [Pseudomonas cichorii]
gi|284810417|gb|ADB96009.1| putative HrcT [Pseudomonas cichorii]
Length = 146
Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+++L + + R+ C+ L+P + + + +R +A ++ +P + ++ Q +
Sbjct: 10 SESIIALTIGMARLYPCLFLIPAFAFTELKGMLRHTIVLALALFPMPSIRASLTGQTL-D 68
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L++ E +G + GLL+ + + G + G + + + + L
Sbjct: 69 WLDLTALLLKESIIGLLLGLLLAMPFWLFESIGCLFDNQRGALVGGXINPALGDNXSELG 128
Query: 126 SLIGIIGLLALWVIDFH 142
++ + +L + + +
Sbjct: 129 HMLKQVMILLMILGGGY 145
>gi|51587320|emb|CAE53695.1| putative HrcT [Pseudomonas fluorescens]
Length = 175
Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ + + + VN
Sbjct: 33 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPASGIRQAL-IDAQVNWL 91
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 92 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGHL 151
Query: 128 IGIIGLLALWVIDFHHQVFYALV 150
+ +L L + +
Sbjct: 152 FKEMTILLLVATLGIGTLTQLIW 174
>gi|213863367|ref|ZP_03386622.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 79
Score = 46.0 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 32/75 (42%)
Query: 82 VHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDF 141
G ++ ++ G +I +GL+ T + + L L ++ ++ LL +
Sbjct: 5 CAGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNG 64
Query: 142 HHQVFYALVKSYGTI 156
H + LV ++ T+
Sbjct: 65 HLWLISLLVDTFHTL 79
>gi|51587276|emb|CAE53662.1| putative HrcT [Pseudomonas fluorescens bv. V]
gi|51587288|emb|CAE53671.1| putative HrcT [Pseudomonas fluorescens bv. V]
Length = 148
Score = 46.0 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 59/145 (40%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C +L+ +I ++R+ M +++ P + ++ ++ +
Sbjct: 5 EFVPSLLIGMARIYPCGILVAAFCFQHIRGRLRVTIVMVMALLPAPGIHAALEGHDY-SA 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV+ E+ LG + G+L+ + + G+++ G + S TP+
Sbjct: 64 LILAALVLKEVALGLLLGVLLSMPFWMFEGVGALLDNQRGALAGGQLNPSLGPDATPMGH 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L + + L + +
Sbjct: 124 LFKQLAIFLLMTTLGLGALTQLIWD 148
>gi|51587280|emb|CAE53665.1| putative HrcT [Pseudomonas fluorescens bv. V]
Length = 151
Score = 45.6 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C +L+ +I R M ++V P + + Q++ +
Sbjct: 8 EYLPSLLIGMARIYPCGILVAAFCFQHIRGMPRHTIVMVMALVPAPAIHAALAGQDY-SA 66
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E LG + G+L+ + + G+++ G + S TP+
Sbjct: 67 MLLGALVLKEAALGILLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGH 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L + + L V + +
Sbjct: 127 LFKQLAIFLLMVSLGLGTLTQLIWD 151
>gi|51587292|emb|CAE53674.1| putative HrcT [Pseudomonas fluorescens]
Length = 147
Score = 45.6 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 1/144 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ S+ + + R+ C +L+P +I +R M +++ P + + + +
Sbjct: 5 EYLSSVLVGMARIYPCAILVPAFLFQHIRGMLRHVVVMVMALIPAPGIHAVLAAEEYSAL 64
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
S LV E LG G+L+ + + G+++ G + S TP+
Sbjct: 65 M-ISGLVFKEAALGIFLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGH 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALV 150
L + + L + + +
Sbjct: 124 LFKQLVIYLLIAVLGLSVLTQLIW 147
>gi|51587316|emb|CAE53692.1| putative HrcT [Pseudomonas fluorescens bv. V]
Length = 151
Score = 45.6 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C L+ +I R M ++V P + + Q++ +
Sbjct: 8 EYLPSLLIGMARIYPCGTLVAAFCFQHIRGMPRHTIVMVMALVPAPAIHAALAGQDY-SA 66
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E LG + G+L+ + + G+++ G + S TP+
Sbjct: 67 MLLGALVLKEAALGILLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGH 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L + + L V + +
Sbjct: 127 LFKQLAIFLLMVSLGLGTLTQLIWD 151
>gi|51587252|emb|CAE53644.1| putative HrcT [Pseudomonas syringae pv. phaseolicola]
Length = 153
Score = 45.3 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R ++V P + + + N
Sbjct: 10 QFMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVLAMVPAPAISRALGSLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLMIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L ++ + + + +
Sbjct: 129 LFQETLIMLVILTGGLSLITQLIWD 153
>gi|51587312|emb|CAE53689.1| putative HrcT [Pseudomonas fluorescens bv. III]
Length = 155
Score = 45.3 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + +
Sbjct: 13 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQADWL 71
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L+ E+ LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 72 TLGGLMFKEVLLGLLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGHL 131
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ +L L + +
Sbjct: 132 FKEMTILLLVATLGIGTLTQLIWD 155
>gi|51587304|emb|CAE53683.1| putative HrcT [Pseudomonas fluorescens]
Length = 148
Score = 45.3 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ SL + + R+ C +L+P +I R M +++ P + + ++
Sbjct: 6 YLPSLVIAMARIYPCAILVPAFCFQHIRGMPRHVIVMVVALMPAPGIHAALAGADYSLLM 65
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
LV+ E LG + G+L+ + + G+++ G + S TP+ +
Sbjct: 66 -IGALVLKEAVLGLLLGVLLSMPFWLFESVGALLDNQRGALTGGQINPSLGPDATPIGHM 124
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ + L V + +
Sbjct: 125 FKQLAIFLLMVTLGLGVLTQLIWD 148
>gi|91206076|ref|YP_538431.1| VirB6 [Rickettsia bellii RML369-C]
gi|157826567|ref|YP_001495631.1| VirB6 [Rickettsia bellii OSU 85-389]
gi|121957708|sp|Q1RH22|Y1261_RICBR RecName: Full=Uncharacterized lipoprotein RBE_1261; Flags:
Precursor
gi|91069620|gb|ABE05342.1| VirB6 [Rickettsia bellii RML369-C]
gi|157801871|gb|ABV78594.1| VirB6 [Rickettsia bellii OSU 85-389]
Length = 1157
Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 26/200 (13%), Positives = 63/200 (31%), Gaps = 18/200 (9%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98
RL + ++ ++ + + + ++ + +
Sbjct: 291 RLSVSALLTLYIMFTGFSFLIGNINMTHVELVVRILKVSVVSILLSTSKAWTFFHDYL-- 348
Query: 99 SVISTAIGLNLQTSMGISDSLAETPLN-----SLIGIIGLLALWVIDFHHQVFYALVKSY 153
+ GL + S ++ L+ + + L + L+ Y
Sbjct: 349 -FVFFVEGLAQILQIVQDASTGQSLLSLLISPQTLSKLFSLLFVDPLGFIYIILYLIALY 407
Query: 154 GTIPIGQELNFGNIFSSFVNMLQTTFMIMLRL-SSPFLFFYIVFNISIGLLNKLVPQIPI 212
F IF + + L I + + +P +++FNI+ L + Q+
Sbjct: 408 --------FIFLLIFKATIIYLTALITIGMIITMAPIFICFMLFNITRSLFENWLRQLIS 459
Query: 213 YFISTPYLIGLGSLFLCLSI 232
Y I P ++ +G F+ + I
Sbjct: 460 YAI-QPIILFVGIAFIGMII 478
>gi|213023960|ref|ZP_03338407.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 111
Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 32/96 (33%)
Query: 79 LGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWV 138
+ + G V + G ++ T G + T + + L + ++
Sbjct: 1 MVFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFI 60
Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNM 174
+ L +SY +P G+ L F F ++
Sbjct: 61 SGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQA 96
>gi|51587248|emb|CAE53641.1| putative HrcT [Pseudomonas syringae pv. syringae]
Length = 153
Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
M+ + L + R+ C++L+P Y+ +R +++ P + ++ + N
Sbjct: 10 QFMLGMGLAMARLMPCMLLVPAFCFKYLKGPLRYAVVAVMAMIPAPAISKALESLD-DNW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FAIGGLLIKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L ++ + + + +
Sbjct: 129 LFQETLIMLVILTGGLSLMTQLIWD 153
>gi|321399635|emb|CBJ44642.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTE-J5-708]
Length = 155
Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGLL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ +L L + +
Sbjct: 131 FKEMTILLLVTTLGIGTLTQLIWD 154
>gi|321399647|emb|CBJ44651.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-48-521]
Length = 155
Score = 44.5 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 57/144 (39%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFRFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGLL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ + +L L + +
Sbjct: 131 LKEMTILLLVTTLGIGTLTQLIWD 154
>gi|320189197|gb|EFW63856.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. EC1212]
gi|326339062|gb|EGD62877.1| type III secretion apparatus protein SpaR/YscT/HrcT [Escherichia
coli O157:H7 str. 1044]
Length = 102
Score = 44.1 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 27/86 (31%)
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
+N + L E+ +G L+ GS I G L +++ + + +
Sbjct: 17 LNEIDIALLAAREIIIGLFIACLLASPFWIFLAIGSFIDNQRGATLSSTLDPATGVDTSE 76
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYAL 149
L L + + + L
Sbjct: 77 LARLFNLFSAAVYLTNGGLNFILETL 102
>gi|321399659|emb|CBJ44660.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-J5-521]
Length = 154
Score = 44.1 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGLL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ +L L + +
Sbjct: 131 FKEMTILLLVTTLGIGTLTQLIWD 154
>gi|321399619|emb|CBJ44630.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTE-48-102]
gi|321399623|emb|CBJ44633.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTE-48-104]
gi|321399643|emb|CBJ44648.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-25-521]
Length = 151
Score = 43.7 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 1/134 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + +
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQADWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L+ E+ LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 TLGGLMFKEVLLGLLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGHL 130
Query: 128 IGIIGLLALWVIDF 141
+ +L L
Sbjct: 131 FKEMTILLLVATLG 144
>gi|321399675|emb|CBJ44672.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-J5-623]
Length = 154
Score = 43.7 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 1/142 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + +
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHMRGLPRRAVVFALGMLPAPGIRQAL-IDAQADWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L+ E+ LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 TLGGLMFKEVLLGLLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGHL 130
Query: 128 IGIIGLLALWVIDFHHQVFYAL 149
+ +L L + +
Sbjct: 131 FKEMTILLLVATLGIGTLTQLI 152
>gi|153003615|ref|YP_001377940.1| type III secretion system inner membrane R protein
[Anaeromyxobacter sp. Fw109-5]
gi|152027188|gb|ABS24956.1| type III secretion system inner membrane R protein
[Anaeromyxobacter sp. Fw109-5]
Length = 258
Score = 43.3 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 4/195 (2%)
Query: 24 MLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83
M P L +P VR+ A L + + + EL LG V
Sbjct: 28 MASPFLGGPLVPPIVRVALA----AGLGAAVSAASAPPPVADGLALAAAGARELALGAVL 83
Query: 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHH 143
L+ V + G + T G L E+ L+ ++
Sbjct: 84 AFLVSVPVEAARAAGRLADTFRGATLSELHVAPIRQRESAAGDLLAHWVVVLASWAGGDR 143
Query: 144 QVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLL 203
V L+ ++ +P G G + + + +++P + +++I L+
Sbjct: 144 LVVQGLLSTFAAVPPGARAALGGALPAVLAAAGELVAAAVAIAAPAAAGVLAVDLAIALV 203
Query: 204 NKLVPQIPIYFISTP 218
++ PQ+ + P
Sbjct: 204 ARVAPQLGAVNAAQP 218
>gi|321399671|emb|CBJ44669.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-J5-622]
Length = 152
Score = 43.3 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 1/142 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + +
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHMRGLPRHAVVFALGMLPAPGIRQAL-IDAQADWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L+ E+ LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 TLGGLMFKEVLLGLLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGHL 130
Query: 128 IGIIGLLALWVIDFHHQVFYAL 149
+ +L L + +
Sbjct: 131 FKEMTILLLVATLGIGTLTQLI 152
>gi|51473241|ref|YP_066998.1| VirB6-like protein of the type IV secretion system [Rickettsia
typhi str. Wilmington]
gi|81390303|sp|Q68XX6|Y028_RICTY RecName: Full=Uncharacterized lipoprotein RT0028; Flags: Precursor
gi|51459553|gb|AAU03516.1| VirB6-like protein of the type IV secretion system [Rickettsia
typhi str. Wilmington]
Length = 1154
Score = 43.3 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 23/200 (11%), Positives = 65/200 (32%), Gaps = 14/200 (7%)
Query: 39 RLCFAMAFSI-VLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFT 97
R+ + ++ ++ L I N + ++ + + + + F
Sbjct: 287 RISVSAILTLYIMFTGLSFLIGNINLTHVELIIRIFKISIISILLSSDKAWTFFHDYLFV 346
Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLN-----SLIGIIGLLALWVIDFHHQVFYALVKS 152
+ L + + +++ L + + L + L+
Sbjct: 347 FFIDGVQQILQIINEAAATGPGSQSLLGLLISTQTLSKLFSLLFVDWLGFIYIILYLIAL 406
Query: 153 YGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPI 212
Y + F ++ + + + M+ + P +++FNI+ L + Q+
Sbjct: 407 Y-------FIFFLIFKATIIYLTALITIGMMIIMGPIFICFMLFNITRSLFENWLRQLIS 459
Query: 213 YFISTPYLIGLGSLFLCLSI 232
Y + P ++ G F+ + I
Sbjct: 460 YAL-QPIILFAGIAFISMII 478
>gi|321399667|emb|CBJ44666.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-J5-621]
Length = 151
Score = 42.9 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 1/134 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + +
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHMRGLPRHAVVFALGMLPAPGIRQAL-IDAQADWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L+ E+ LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 TLGGLMFKEVLLGLLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGHL 130
Query: 128 IGIIGLLALWVIDF 141
+ +L L
Sbjct: 131 FKEMTILLLVATLG 144
>gi|321399663|emb|CBJ44663.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-J5-522]
Length = 154
Score = 42.9 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 1/143 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGLL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALV 150
+ +L L + +
Sbjct: 131 FKEMTILLLVTTLGIGTLTQLIW 153
>gi|318607485|emb|CBY28983.1| type III secretion inner membrane protein
(YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar
export components) [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 128
Score = 42.9 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYI-PMQVRLCFAMAFSIVLLPFLWDTIDLQNFVN 65
+ +L L + R +++LP + + +R A ++ + P ++ T L +
Sbjct: 6 HWLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNSVVFAIALPVTP-IFFTTSLLYHDS 64
Query: 66 RAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ ++ +EL +G + G + + + G +I T G + T S + +
Sbjct: 65 LTGWFWVLCIELMVGVLIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMESSIFG 124
Query: 126 SLIG 129
L
Sbjct: 125 VLFT 128
>gi|315140238|gb|ADT81111.1| RscT [Pseudomonas fluorescens]
Length = 127
Score = 42.9 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+M+ + L + R+ C+ML+P Y+ +R A ++V P + + Q N
Sbjct: 10 ELMLGIALAMARILPCMMLVPAFCFKYLKGPLRYAVTCAVAMVPAPSIGRVLSGQ-HENW 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L++ E+ LG + GLL+ + G+++ + G + S TPL
Sbjct: 69 LMIGGLLLKEMVLGVLLGLLLYMPFWMFATVGALLDSQRGALSGGQLNPSLGPDATPLG 127
>gi|321399615|emb|CBJ44627.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTE-25-201]
Length = 154
Score = 42.6 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++ + L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLPIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRRAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGLL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ +L L + +
Sbjct: 131 FKEMTILLLVTTLGIGTLTQLIWD 154
>gi|12331292|emb|CAC24708.1| putative HrcT protein [Pseudomonas fluorescens]
Length = 143
Score = 42.6 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+M+ + L + R+ C++L+P Y+ +R S+V P + + + N
Sbjct: 10 ELMLGMGLAMARLLPCMLLVPAFCFKYLKGPLRYAVVAVVSMVPAPGISRALSSLD-DNG 68
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
L++ E LG + GLL+ G+++ + G + + TPL
Sbjct: 69 FVMGALLLKEAVLGTLLGLLLYAPFWMFASVGALLDSQRGALSGGQLNPALGPDATPLGE 128
Query: 127 LIGIIGLLALWVIDF 141
L ++ + +
Sbjct: 129 LFQETLIMLVILSGG 143
>gi|321399639|emb|CBJ44645.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-25-321]
Length = 154
Score = 42.6 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L P ++ R ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLDPVFCFQHLRGLPRHAVVFVLGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESMGALLDNQRGALIGGQLNPALGTDTTPLGLL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ +L L + +
Sbjct: 131 FKEMTILLLVTTLGIGTLTQLIWD 154
>gi|51587272|emb|CAE53659.1| putative HrcT [Pseudomonas fluorescens]
Length = 148
Score = 42.6 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C +L+ +I +R M +++ P + ++ Q++
Sbjct: 5 EFLPSLLIGMARIYPCAILVAAFCFQHIRGMLRHTIVMVMALLPAPGIHAALEGQDYSAL 64
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ E+ LG + G+L+ + + G+++ G + S TP+
Sbjct: 65 M-LGALVLKEVALGLLLGVLLAMPFWMFEAVGALLDNQRGALAGGQLNPSLGPDATPIGH 123
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L + + L V + +
Sbjct: 124 LFKQLAIFLLMVSLGLGALTQLIWD 148
>gi|88607035|ref|YP_504982.1| type IV secretion systemprotein VirB6 family [Anaplasma
phagocytophilum HZ]
gi|88598098|gb|ABD43568.1| type IV secretion system protein VirB6 family (VirB6-3) [Anaplasma
phagocytophilum HZ]
Length = 1477
Score = 42.2 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 18/212 (8%)
Query: 38 VRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLG-----CVHGLLIRVYTL 92
VR + +L ++ I + +K+ ++ + ++ L
Sbjct: 823 VRALLVLYLMFSVLGYIIGIIQVTKHDIFVRIAKIALIITLVSPGSWKFFTEHCFSIFIL 882
Query: 93 GLQFTGSVISTAIG-LNLQTSMGISDSLAETPLNSLIGIIGLLALWVID-FHHQVFYALV 150
G+ +IS G L +S DS L S + L +
Sbjct: 883 GIP---DIISAFNGYLGGDSSFAFLDSTLGIMLTSEFWLRMLSLFMAGPVGWLAFIGIIW 939
Query: 151 KSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQI 210
+ I M+ F++ L +P +++F ++ GL + + +
Sbjct: 940 ALFSFF----LAMMRAIILYLFIMVGLAFLLTL---APIFITFLLFQVTKGLFDGWLKML 992
Query: 211 PIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
+ + P ++ FL I ++ +
Sbjct: 993 VNFML-QPIILFAALAFLNQVIITSLHAVTDF 1023
>gi|226446411|gb|ACO58570.1| HrcT [Pseudomonas fluorescens]
Length = 133
Score = 42.2 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C +L+ +I ++R+ M +++ P + ++ ++ +
Sbjct: 5 EFLPSLLIGMARIYPCGILVAAFCFQHIRGRLRVTIVMVMALLPAPGIHAALEGHDY-SA 63
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
+ LV+ E+ LG + G+L+ + + G+++ G + S TP+
Sbjct: 64 LILAALVLKEVALGLLLGVLLSMPFWMFEGVGALLDNQRGALAGGQLNPSLGPDATPMGH 123
Query: 127 LIGIIGLLAL 136
L + + L
Sbjct: 124 LFKQLAIFLL 133
>gi|51587324|emb|CAE53698.1| putative HrcT [Pseudomonas sp. CFBP 11402]
Length = 151
Score = 42.2 bits (98), Expect = 0.063, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 54/144 (37%), Gaps = 1/144 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ SL + + R+ C +L+ ++ R M +++ P + + Q+
Sbjct: 9 YLPSLVIGMARIYPCGILVAAFCFQHVRGLPRHTIVMVLALLPAPGIHAALAGQDPSAIM 68
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
L++ E+ LG + G+L+ + + G+++ G + S TP+ +
Sbjct: 69 -LGALMIKEVVLGLLLGVLLAMPFWMFESVGALLDNQRGALAGGQLNPSLGPDATPIGHM 127
Query: 128 IGIIGLLALWVIDFHHQVFYALVK 151
+ + L + + +
Sbjct: 128 FKQLAIYLLMAVLGLGTLTQLIWD 151
>gi|321399651|emb|CBJ44654.1| putative type III secretion system protein HrcT [Pseudomonas sp.
MTR-48-522]
Length = 155
Score = 41.8 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ L+ EL LG + G+L+ + + G+++ G + + + TPL L
Sbjct: 71 SLAGLMFKELVLGLLLGVLLAMPLWLYESVGALLDNQRGALIGGQLNPALGTDTTPLGLL 130
Query: 128 IGIIGLLALWVIDFHHQVFYALVKS 152
+ +L L + ++
Sbjct: 131 FKEMTILLLVTTLGIGTLTQLILGQ 155
>gi|315140250|gb|ADT81120.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 41.4 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A S++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALSMLPAPGIRQAL-IDAKVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ EL LG + G+L+ V + G+++ G + + + TPL
Sbjct: 71 SLGGLMFKELVLGFLLGVLLAVPFWLYESVGALLDNQRGALIGGQLNPALGADTTPLG 128
>gi|51587284|emb|CAE53668.1| putative HrcT [Pseudomonas fluorescens bv. I]
Length = 151
Score = 41.0 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ SL + + R+ C L+ +I +R M +++ P + + Q +
Sbjct: 8 EYLPSLLVAMARIYPCAFLVAAFCFQHIRGMLRHSIVMVMALLPAPAIHVMLAGQEYSAL 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV EL LG + G+L+ + + G+++ G + S TP
Sbjct: 68 M-LGGLVFKELALGLLLGVLLSMPFWLFESVGALLDNQRGALAGGQLNPSLGPDATPAGH 126
Query: 127 LIGIIGLLALWVIDFHHQVFYALVK 151
L + + L + +
Sbjct: 127 LFKQLAIFLLMASMGLGALTQLIWD 151
>gi|51587268|emb|CAE53656.1| putative HrcT [Pseudomonas fluorescens bv. I]
Length = 160
Score = 41.0 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 53/142 (37%), Gaps = 1/142 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+ SL + + R+ C +L+ +I +R M +++ P + + ++
Sbjct: 18 FLPSLIIGMARIYPCGILVAAFCFQHIRGMLRHILVMVMALMPAPGIHAALTEHDYSAFV 77
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSL 127
+ + L LG + G+L+ + + G+++ G + S TP+ L
Sbjct: 78 LAALALKE-LALGVLLGMLLAMPFWLFESVGALLDNQRGALAGGQLNPSLGPDATPIGHL 136
Query: 128 IGIIGLLALWVIDFHHQVFYAL 149
+ + L V + +
Sbjct: 137 FKQLAIFLLMVTLGLGALTQLI 158
>gi|315140222|gb|ADT81099.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 40.6 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ EL LG + G+L+ + + G+++ G + + + TPL
Sbjct: 71 SLVGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGSDTTPLG 128
>gi|315140230|gb|ADT81105.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 40.6 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDXQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ EL LG + G+L+ + + G+++ G + + + TPL
Sbjct: 71 SLIGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGSDTTPLG 128
>gi|315140206|gb|ADT81087.1| RscT [Pseudomonas fluorescens]
gi|315140210|gb|ADT81090.1| RscT [Pseudomonas fluorescens]
gi|315140218|gb|ADT81096.1| RscT [Pseudomonas fluorescens]
gi|315140226|gb|ADT81102.1| RscT [Pseudomonas fluorescens]
gi|315140234|gb|ADT81108.1| RscT [Pseudomonas fluorescens]
gi|315140242|gb|ADT81114.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 40.6 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L+ EL LG + G+L+ + + G+++ G + + + TPL
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGSDTTPLG 128
>gi|315140214|gb|ADT81093.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 40.6 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
L+ EL LG + G+L+ + + G+++ G + + + TPL
Sbjct: 71 SLIGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGSDTTPLG 128
>gi|315140194|gb|ADT81078.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 40.3 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L+ EL LG + G+L+ + + G+++ G + + + TPL
Sbjct: 71 SLAGLMFKELVLGLLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLG 128
>gi|315140174|gb|ADT81063.1| RscT [Pseudomonas fluorescens]
gi|315140178|gb|ADT81066.1| RscT [Pseudomonas fluorescens]
gi|315140182|gb|ADT81069.1| RscT [Pseudomonas fluorescens]
gi|315140186|gb|ADT81072.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 40.3 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L+ EL LG + G+L+ + + G+++ G + + + TPL
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGTDTTPLG 128
>gi|315140190|gb|ADT81075.1| RscT [Pseudomonas fluorescens]
gi|315140202|gb|ADT81084.1| RscT [Pseudomonas fluorescens]
gi|315140246|gb|ADT81117.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 40.3 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L+ EL LG + G+L+ + + G+++ G + + + TPL
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGSDTTPLG 128
>gi|315140198|gb|ADT81081.1| RscT [Pseudomonas fluorescens]
Length = 128
Score = 39.9 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R A ++ P + + + VN
Sbjct: 12 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFALGMLPAPGIRQAL-IDAQVNWL 70
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLN 125
+ L+ EL LG + G+L+ + + G+++ G + + + TPL
Sbjct: 71 SLAGLMFKELVLGFLLGVLLAMPFWLYESVGALLDNQRGALIGGQLNPALGADTTPLG 128
>gi|15229641|ref|NP_188473.1| AtALMT9 (aluminum-activated malate transporter 9); anion channel
[Arabidopsis thaliana]
gi|75273888|sp|Q9LS46|ALMT9_ARATH RecName: Full=Aluminum-activated malate transporter 9;
Short=AtALMT9
gi|11994107|dbj|BAB01110.1| unnamed protein product [Arabidopsis thaliana]
gi|20466394|gb|AAM20514.1| unknown protein [Arabidopsis thaliana]
gi|23198100|gb|AAN15577.1| unknown protein [Arabidopsis thaliana]
gi|332642577|gb|AEE76098.1| aluminum-activated malate transporter 9 [Arabidopsis thaliana]
Length = 598
Score = 39.5 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 16/164 (9%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98
++ A+ +L+ + DL + A + +V+ E +G L G
Sbjct: 93 KIGLALTIVALLIFYQEPNPDLSRYSVWAILTVVVVFEFTIGATLSKGFNRALGTLSAGG 152
Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158
+ A T I L+++ I F L S
Sbjct: 153 LALGMA--------------ELSTLFGDWEEIFCTLSIFCI-GFLATFMKLYPSMKAYEY 197
Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGL 202
G + ++ +T I + +S FL + +S+G+
Sbjct: 198 GFRVFLLTYCYILISGFRTGQFIEVAISR-FLLIALGAGVSLGV 240
>gi|218512616|ref|ZP_03509456.1| type III secretion system translocation protein [Rhizobium etli
8C-3]
Length = 136
Score = 39.1 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 20 GSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79
+++ P S+ I +R A+ S + F + + + + + L M EL
Sbjct: 27 LGILLIFPIFSLFSIVGILRFGLAIGLSAPSVAFAYSVLAI-GDTSWFDLAALSMKELCF 85
Query: 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIG 129
G + G+ + + Q G + G N ++L PL SL+
Sbjct: 86 GALIGMGLGIPFWAAQAAGDMTDVYRGANAANLFDQINALETAPLGSLMM 135
>gi|149922181|ref|ZP_01910619.1| hypothetical protein PPSIR1_23774 [Plesiocystis pacifica SIR-1]
gi|149816921|gb|EDM76406.1| hypothetical protein PPSIR1_23774 [Plesiocystis pacifica SIR-1]
Length = 250
Score = 38.7 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 14/176 (7%)
Query: 40 LCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGS 99
A+ S+ LP L I L+ + A + + VEL +G V G V + L
Sbjct: 37 AILAVGLSLAWLPALGLGIALERPPDAASMAVAIGVELLIGAVMGAGASVLSGALVGASQ 96
Query: 100 VISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIG 159
+G + L + L + H A+ +P+G
Sbjct: 97 SCEARLGAGPVGLEPGTGGSLSALLIAASLAASL----SLGLHLPALVAMRGLLTRVPLG 152
Query: 160 QE----------LNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNK 205
L+ I + + ++ L L++P L V ++ +G+L +
Sbjct: 153 AGARLLDGAGASLDALAIATELGGVAFEACVLGLALATPVLLTRAVVDLGVGVLGR 208
>gi|314935447|ref|ZP_07842799.1| phage infection protein [Staphylococcus hominis subsp. hominis C80]
gi|313656012|gb|EFS19752.1| phage infection protein [Staphylococcus hominis subsp. hominis C80]
Length = 942
Score = 38.7 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 12/138 (8%)
Query: 118 SLAETPLNSLIGIIGLLALWVI-----DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV 172
TP + + I L V + H ++ L K + G + + +
Sbjct: 739 GSGMTPFYTALSIWVGALLLVSLLTVHNKHEELADQLTKRQEYLGKGMFFILMGVLQTLI 798
Query: 173 NMLQTTFMIMLRLSSPFLFFY--IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230
F++ ++ SP LF + I + + + P + + L L
Sbjct: 799 VTTGDLFLLHAQVESPLLFVLVALFGAIVFNTIVYTC----VSILGNPGK-AVAIILLVL 853
Query: 231 SIEIIVYQFSHSFLYGFF 248
I F L FF
Sbjct: 854 QIAGGGGTFPVVTLPKFF 871
>gi|228475441|ref|ZP_04060159.1| phage infection protein [Staphylococcus hominis SK119]
gi|228270223|gb|EEK11658.1| phage infection protein [Staphylococcus hominis SK119]
Length = 942
Score = 38.7 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 12/138 (8%)
Query: 118 SLAETPLNSLIGIIGLLALWVI-----DFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV 172
TP + + I L V + H ++ L K + G + + +
Sbjct: 739 GSGMTPFYTALSIWVGALLLVSLLTVHNKHEELADQLTKRQEYLGKGMFFILMGVLQTLI 798
Query: 173 NMLQTTFMIMLRLSSPFLFFY--IVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230
F++ ++ SP LF + I + + + P + + L L
Sbjct: 799 VTTGDLFLLHAQVESPLLFVLVALFGAIVFNTIVYTC----VSILGNPGK-AVAIILLVL 853
Query: 231 SIEIIVYQFSHSFLYGFF 248
I F L FF
Sbjct: 854 QIAGGGGTFPVVTLPKFF 871
>gi|297830500|ref|XP_002883132.1| hypothetical protein ARALYDRAFT_898211 [Arabidopsis lyrata subsp.
lyrata]
gi|297328972|gb|EFH59391.1| hypothetical protein ARALYDRAFT_898211 [Arabidopsis lyrata subsp.
lyrata]
Length = 597
Score = 38.7 bits (89), Expect = 0.82, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 16/164 (9%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98
++ A+ +L+ + DL + A + +V+ E +G L G
Sbjct: 92 KIGLALTIVALLIFYQEPNPDLSRYSVWAILTVVVVFEFTIGATLSKGFNRALGTLSAGG 151
Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158
+ A T + L+++ I F L S
Sbjct: 152 LALGMA--------------ELSTLFGDWEELFCTLSIFCI-GFLATFMKLYPSMKAYEY 196
Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGL 202
G + ++ +T I + +S FL + +S+G+
Sbjct: 197 GFRVFLLTYCYILISGFRTGQFIQVAISR-FLLIALGAGVSLGV 239
>gi|289812193|ref|ZP_06542822.1| flagellar biosynthesis protein FliR [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 94
Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 180 MIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+ L L+ P + + N+++GLLN++ PQ+ I+ I P + +G + + + +I
Sbjct: 11 LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC 70
Query: 240 SHSFLYGF 247
H F F
Sbjct: 71 EHLFSEIF 78
>gi|91214578|ref|ZP_01251551.1| hypothetical protein P700755_16974 [Psychroflexus torquis ATCC
700755]
gi|91187005|gb|EAS73375.1| hypothetical protein P700755_16974 [Psychroflexus torquis ATCC
700755]
Length = 524
Score = 37.9 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 183 LRLSSPFLFFYIVFNISIGLLNKL----VPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQ 238
L +S P L ++F S G ++ QI I+ + P I + FL +I
Sbjct: 240 LLISGPVLIGLLIFLFSFGTISVFELGDFSQIEIFVLGIPNWIQIVLFFLVAAIPFFYLL 299
Query: 239 FSHS 242
Sbjct: 300 ILSL 303
>gi|167949068|ref|ZP_02536142.1| flagellar biosynthetic protein FliR [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 64
Score = 37.9 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 195 VFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ NI +G++ + PQ+ I+ + P I G + +++ ++ FS+ GF
Sbjct: 1 MVNIGMGVVMRAAPQLNIFSVGFPITILFGFALVWVTLPNVLTVFSNILEEGF 53
>gi|330947801|gb|EGH48223.1| flagellar biosynthesis protein FliR [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 59
Score = 37.2 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW 55
+ S L + R+ + +M +P + + +P +VR+ A+A ++V+ P L
Sbjct: 10 STWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALP 59
>gi|148270677|ref|YP_001245137.1| binding-protein-dependent transport systems inner membrane
component [Thermotoga petrophila RKU-1]
gi|147736221|gb|ABQ47561.1| binding-protein-dependent transport systems inner membrane
component [Thermotoga petrophila RKU-1]
Length = 823
Score = 37.2 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 50/196 (25%), Gaps = 10/196 (5%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++SL + C + S + R I + P + I + + +N
Sbjct: 615 VIVSLIVAFITTTVCAIAAYPFSRMRFFGR-RYGIMALLLIQMFPGVIFMIAIYDLLNFM 673
Query: 68 Y-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE----- 121
Y + ++ G + L + G + L + +
Sbjct: 674 GKYIPFIGIDTLGGLIFAYLTNIAYNMYLIKGFYDTIPTSLEEAAIVDGATRFQSFYRII 733
Query: 122 -TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
++ ++ LL + V ++++ L F
Sbjct: 734 IPLARPILTVVFLLVFIGTFNEYVVARIILQNVRHYTYALGLQAFATGPYETEWG--LFT 791
Query: 181 IMLRLSSPFLFFYIVF 196
L + +
Sbjct: 792 AAALLGMTPMVILFLS 807
>gi|254992599|ref|ZP_05274789.1| hypothetical protein LmonocytoFSL_05686 [Listeria monocytogenes FSL
J2-064]
Length = 901
Score = 36.8 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV-FYALVKSYGTIPIGQE--LNFGNIFSSF 171
+ A +P + + + L + V A + S+ G+ + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|15643958|ref|NP_229007.1| maltose ABC transporter, permease protein [Thermotoga maritima
MSB8]
gi|4981754|gb|AAD36277.1|AE001777_3 maltose ABC transporter, permease protein [Thermotoga maritima
MSB8]
Length = 823
Score = 36.8 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 50/196 (25%), Gaps = 10/196 (5%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++SL + C + S + R I + P + I + + +N
Sbjct: 615 VIVSLIVAFITTTVCAIAAYPFSRMRFFGR-RYGIMALLLIQMFPGVIFMIAIYDLLNFM 673
Query: 68 Y-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE----- 121
Y + ++ G + L + G + L + +
Sbjct: 674 GKYIPFIGIDTLGGLIFAYLTNIAYNMYLIKGFYDTIPTSLEEAAIVDGATRFQSFYKII 733
Query: 122 -TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
++ ++ LL + V ++++ L F
Sbjct: 734 IPLARPILTVVFLLVFIGTFNEYVVARIILQNVRHYTYALGLQAFATGPYETEWG--LFT 791
Query: 181 IMLRLSSPFLFFYIVF 196
L + +
Sbjct: 792 AAALLGMTPMVILFLS 807
>gi|257067418|ref|YP_003153673.1| YhgE/Pip-like protein [Brachybacterium faecium DSM 4810]
gi|256558236|gb|ACU84083.1| YhgE/Pip-like protein [Brachybacterium faecium DSM 4810]
Length = 988
Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 13/186 (6%)
Query: 6 EIIMMSLFLIVCRVGSC--IMLLPGLSMSYIP---MQVRLCFAMAFSIVLLPFLWDTIDL 60
E + I VG +++P S VRL A + +L L +
Sbjct: 795 EGLAPLFLAISLWVGGMAIFLMMPPFSEQAAARGVGPVRL-LAGGLTPAILLGLVQCVIA 853
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
++R + V L LG GL V+ G++ + +L
Sbjct: 854 VVALHRFVGVTMQDVPLMLGLA-GLTSAVFVALNHGFGALFGPVGKFVALVLI----ALQ 908
Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
+ L + + V ++ G ++ + L F
Sbjct: 909 ISGAGGTYPTPTLPGFFQAIHEYLPMTHAVDAFRGAIGGGWIDPVGDIRWLLAWL--VFG 966
Query: 181 IMLRLS 186
+ L L+
Sbjct: 967 VALGLA 972
>gi|222100343|ref|YP_002534911.1| Maltose ABC transporter, permease protein [Thermotoga neapolitana
DSM 4359]
gi|221572733|gb|ACM23545.1| Maltose ABC transporter, permease protein [Thermotoga neapolitana
DSM 4359]
Length = 824
Score = 36.8 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 50/196 (25%), Gaps = 10/196 (5%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++SL + C + S + R I + P + I + + +N
Sbjct: 616 VIVSLIVAFITTTVCAIAAYPFSRMRFLGR-RYGIMALLLIQMFPGVIFMIAIYDLLNFM 674
Query: 68 Y-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE----- 121
Y + ++ G + L + G + L + +
Sbjct: 675 GKYIPFIGIDTLGGLIFAYLTNIAYNMYLIKGFYDTIPTSLEEAAIVDGATRFQSFYRII 734
Query: 122 -TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
++ ++ LL + V ++++ L F
Sbjct: 735 IPLARPILTVVFLLVFIGTFNEYVVARIILQNVRHYTYALGLQAFATGPYETEWG--LFT 792
Query: 181 IMLRLSSPFLFFYIVF 196
L + +
Sbjct: 793 AAALLGMTPMVILFLS 808
>gi|74317115|ref|YP_314855.1| flagellar biosynthetic fliR transmembrane protein [Thiobacillus
denitrificans ATCC 25259]
gi|74056610|gb|AAZ97050.1| probable flagellar biosynthetic fliR transmembrane protein
[Thiobacillus denitrificans ATCC 25259]
Length = 249
Score = 36.4 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 6/236 (2%)
Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
E + + R+ +L P + + +++ L +
Sbjct: 3 LTEAALGAWLYGFARLAGWTLLDPLTGRLPV-----GLRLLLAAVLALALMPGQTLAVPP 57
Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
A + VE G L + + + L T + A+
Sbjct: 58 PFTAAGLLALGVEFAWGAALALCVWLVFAAAAAALTWTGHTATAGLMTLTAEQAAPADAA 117
Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIML 183
+L G + +A H V AL S+ +P+ L F +
Sbjct: 118 WRALAGWLAAMAFLGASGHLLVVDALRDSFTAMPL-AVLPEAAALRELAEAGAWLFAAGV 176
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
+L+ P L ++ ++ L+ + P + ++ L ++ I
Sbjct: 177 QLALPLLALVLLVQLAFALVARTTPGLDLFSAGLGIAAAALVLAWIWAVPRISQGI 232
>gi|319776258|ref|YP_004138746.1| arylsulfatase A-like enzyme [Haemophilus influenzae F3047]
gi|317450849|emb|CBY87073.1| predicted arylsulfatase A-like enzyme [Haemophilus influenzae
F3047]
Length = 554
Score = 36.4 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 2 TISPEIIMMSLFLI-VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
T+ P + L R G +P S Q RL + ++ L+ +L+ I
Sbjct: 32 TVIPLCFLALYMLPKYLRNG--YTTVPEFFESRFDRQTRLIMS---TLFLVFYLFIVIPT 86
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ ++K+ +E G +G I + + G++ + GL + +S GI +
Sbjct: 87 ALYTGAIAFNKIFNLETAFGLSYGAAITYTVIAIGVVGAIYAIFTGL-MPSSHGIIKNGE 145
Query: 121 ETPLN 125
+ +
Sbjct: 146 KGGIG 150
>gi|213693336|ref|YP_002323922.1| virulence factor MVIN family protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213524797|gb|ACJ53544.1| virulence factor MVIN family protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320459518|dbj|BAJ70139.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 1290
Score = 36.4 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 45/154 (29%)
Query: 41 CFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSV 100
A++ S + P + ++ N + + + L + + +
Sbjct: 301 LIAVSVSTAMFPKISRSVAAANLDEARHDLVNALNNVGLLIIFFAAAMIVFPEPIIRALL 360
Query: 101 ISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ 160
S ++ + S + TPL S +I D H A+++ T
Sbjct: 361 PSVSMDETMLISYALIALSVGTPLGSAFLLIQRTFYAFEDGLHPFLSAVMQYGFTSVFMI 420
Query: 161 ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+V + + + L+ P +
Sbjct: 421 IGMMVLPPEHWVLGIACSVTLGGLLALPLTLMML 454
>gi|329123398|ref|ZP_08251962.1| cerebroside-sulfatase [Haemophilus aegyptius ATCC 11116]
gi|327470980|gb|EGF16435.1| cerebroside-sulfatase [Haemophilus aegyptius ATCC 11116]
Length = 554
Score = 36.4 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 2 TISPEIIMMSLFLI-VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
T+ P + L R G +P S Q RL + ++ L+ +L+ I
Sbjct: 32 TVIPLCFLALYMLPKYLRNG--YTTVPEFFESRFDRQTRLIMS---TLFLVFYLFIVIPT 86
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
+ ++K+ +E G +G I + + G++ + GL + +S GI +
Sbjct: 87 ALYTGAIAFNKIFNLETAFGLSYGAAITYTVIAIGVVGAIYAIFTGL-MPSSHGIIKNGE 145
Query: 121 ETPLN 125
+ +
Sbjct: 146 KGGIG 150
>gi|239617767|ref|YP_002941089.1| binding-protein-dependent transport systems inner membrane
component [Kosmotoga olearia TBF 19.5.1]
gi|239506598|gb|ACR80085.1| binding-protein-dependent transport systems inner membrane
component [Kosmotoga olearia TBF 19.5.1]
Length = 923
Score = 36.4 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 25/208 (12%), Positives = 59/208 (28%), Gaps = 11/208 (5%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
++++L + + V + S P + + I + P + + + +
Sbjct: 716 VLVALMVSLISVTVAALAAYPFSRMRFPGRSQ-GLLFLLLIQMFPSIMFMVAVYALLQFM 774
Query: 68 Y-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE----- 121
Y + ++ G + + G + L + + L
Sbjct: 775 GNYVSWLGLDSLGGLIFVYSGGIAFNTWLIKGYFDTIPDSLEESAMIDGATRLQTFWKIV 834
Query: 122 -TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
++ +I +L I + L++ L F
Sbjct: 835 IPLARPILAVIAILTFMGIFNEFIMARILLQDINKWTYAVGL--QQFSGRFETSWGPFTA 892
Query: 181 IMLRLSSPFL-FFYIVFNISIGLLNKLV 207
L + P + FF I+ + +G L K
Sbjct: 893 AALIGAIPMVTFFLILQDYIVGGLTKGA 920
>gi|323191513|gb|EFZ76774.1| lateral flagellar export/assembly protein LfiR domain protein
[Escherichia coli RN587/1]
Length = 67
Score = 36.4 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHS 242
++ GLLN++ P + ++ + P + G + + + + H
Sbjct: 1 MLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHL 50
>gi|157803291|ref|YP_001491840.1| hypothetical protein A1E_00525 [Rickettsia canadensis str. McKiel]
gi|157784554|gb|ABV73055.1| hypothetical protein A1E_00525 [Rickettsia canadensis str. McKiel]
Length = 1146
Score = 36.4 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 20/200 (10%), Positives = 60/200 (30%), Gaps = 14/200 (7%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGL-LIRVYTLGLQFT 97
R+ + ++ ++ + + + ++ + + + F
Sbjct: 288 RMSVSAILTLYIMFTGFSFLIGNINLTHVELIIRILKVSIVSILLSTDKAWTFFHDYLFV 347
Query: 98 GSVISTAIGLNLQTSMGISDSLAETPLN-----SLIGIIGLLALWVIDFHHQVFYALVKS 152
+ L + + ++T L + + L + +
Sbjct: 348 FFIDGVQQILQIINEASANGPGSQTLLGLLIAPQTLSKLFSLLFVDWLGFIYIILYFIAL 407
Query: 153 YGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPI 212
Y + ++ + + + M+ P +++FNI+ L + Q+
Sbjct: 408 Y-------FIFLLIFKATIIYLTALIIIGMIITMGPIFICFMLFNITRSLFENWLRQLIS 460
Query: 213 YFISTPYLIGLGSLFLCLSI 232
Y I P ++ G F+ + I
Sbjct: 461 YAI-QPLILFAGIAFISMII 479
>gi|313624727|gb|EFR94676.1| phage infection protein [Listeria innocua FSL J1-023]
Length = 896
Score = 36.0 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV-FYALVKSYGTIPIGQE--LNFGNIFSSF 171
+ A +P + + + L + V A + S+ G+ + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|312282335|dbj|BAJ34033.1| unnamed protein product [Thellungiella halophila]
Length = 597
Score = 36.0 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 16/164 (9%)
Query: 39 RLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTG 98
++ A+ VL+ F DL + A + +V+ E +G L G
Sbjct: 91 KIGLALTIVAVLIFFQEPNPDLSRYSVWAILTVVVVFEFTIGATLSKGFNRALGTLSAGG 150
Query: 99 SVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158
+ A T + ++++ I F L +
Sbjct: 151 LALGMA--------------ELSTLTGDWEELFCTISIFCI-GFIATFMKLYPAMKAYEY 195
Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGL 202
G + ++ +T I + +S FL + +S+G+
Sbjct: 196 GFRVFLLTYCYILISGFRTGQFIEVAISR-FLLIALGAGVSLGV 238
>gi|170289397|ref|YP_001739635.1| binding-protein-dependent transport systems inner membrane
component [Thermotoga sp. RQ2]
gi|170176900|gb|ACB09952.1| binding-protein-dependent transport systems inner membrane
component [Thermotoga sp. RQ2]
Length = 823
Score = 36.0 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 50/196 (25%), Gaps = 10/196 (5%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++SL + C + S + R I + P + I + + +N
Sbjct: 615 VIVSLIVAFITTTVCAIAAYPFSRMRFLGR-RYGIMALLLIQMFPGVIFMIAIYDLLNFM 673
Query: 68 Y-YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAE----- 121
Y + ++ G + L + G + L + +
Sbjct: 674 GKYIPFIGIDTLGGLIFAYLTNIAYNMYLIKGFYDTIPTSLEEAAIVDGATRFQSFYRII 733
Query: 122 -TPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
++ ++ LL + V ++++ L F
Sbjct: 734 IPLARPILTVVFLLVFIGTFNEYVVARIILQNVRHYTYALGLQAFATGPYETEWG--LFT 791
Query: 181 IMLRLSSPFLFFYIVF 196
L + +
Sbjct: 792 AAALLGMTPMVILFLS 807
>gi|238544570|dbj|BAH60921.1| putative flagellar biosynthetic protein FliR [Pantoea ananatis]
Length = 71
Score = 36.0 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247
+ + N+ +GLLN+L PQ+ I+ I P + +G L + L + ++ H F F
Sbjct: 1 IVLLLTINMVLGLLNRLSPQLSIFAIGFPITLSVGILTISLLMPLLAPFCEHLFGEIF 58
>gi|116872037|ref|YP_848818.1| phage infection protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740915|emb|CAK20035.1| phage infection protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 896
Score = 36.0 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|16799728|ref|NP_469996.1| hypothetical protein lin0653 [Listeria innocua Clip11262]
gi|16413093|emb|CAC95885.1| lin0653 [Listeria innocua Clip11262]
Length = 896
Score = 36.0 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|313610221|gb|EFR85505.1| phage infection protein [Listeria monocytogenes FSL F2-208]
Length = 838
Score = 36.0 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 634 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 693
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 694 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 753
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 754 AGGNFPIQVSPPFFQAIY 771
>gi|313675440|ref|YP_004053436.1| phage shock protein c, pspc [Marivirga tractuosa DSM 4126]
gi|312942138|gb|ADR21328.1| phage shock protein C, PspC [Marivirga tractuosa DSM 4126]
Length = 829
Score = 36.0 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 7/137 (5%)
Query: 45 AFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTA 104
+I+L + NF+ A L ++ G G+ + Q G I +
Sbjct: 290 LIAIILNGLAKALGPVLNFIVEAARIVLGIILSLFGLGLGVTFIILLFVSQ--GIWIES- 346
Query: 105 IGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNF 164
+ I + L + + +I +I + + + + ++F
Sbjct: 347 ---SNINFFDIPNELIANTFSLELVLIS-FLFLIIPALFIMIAGISVMARKWLMNRTVSF 402
Query: 165 GNIFSSFVNMLQTTFMI 181
+ FV+++ +I
Sbjct: 403 SLLAVWFVSLIGAAIII 419
>gi|319897112|ref|YP_004135307.1| arylsulfatase a-like enzyme [Haemophilus influenzae F3031]
gi|317432616|emb|CBY80977.1| predicted arylsulfatase A-like enzyme [Haemophilus influenzae
F3031]
Length = 554
Score = 36.0 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 2 TISPEIIMMSLFLI-VCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
T+ P + L R G +P S Q RL + ++ L+ +L+ I
Sbjct: 32 TVIPLCFLALYMLPKYLRNG--YTTVPEFFESRFDRQTRLIMS---TLFLVFYLFIVIPT 86
Query: 61 QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGL 107
+ ++K+ +E G +G I + + G++ + GL
Sbjct: 87 ALYTGAIAFNKIFNLETAFGLSYGAAITYTVIAIGVVGAIYAIFTGL 133
>gi|255521925|ref|ZP_05389162.1| phage infection protein [Listeria monocytogenes FSL J1-175]
Length = 896
Score = 36.0 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|290892845|ref|ZP_06555836.1| phage infection protein [Listeria monocytogenes FSL J2-071]
gi|290557657|gb|EFD91180.1| phage infection protein [Listeria monocytogenes FSL J2-071]
Length = 896
Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|254828283|ref|ZP_05232970.1| phage infection protein [Listeria monocytogenes FSL N3-165]
gi|258600673|gb|EEW13998.1| phage infection protein [Listeria monocytogenes FSL N3-165]
Length = 896
Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|226223274|ref|YP_002757381.1| hypothetical protein Lm4b_00671 [Listeria monocytogenes Clip81459]
gi|225875736|emb|CAS04439.1| Putative Conserved membrane protein [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 896
Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|217965258|ref|YP_002350936.1| phage infection protein [Listeria monocytogenes HCC23]
gi|217334528|gb|ACK40322.1| phage infection protein [Listeria monocytogenes HCC23]
gi|307570186|emb|CAR83365.1| phage infection protein [Listeria monocytogenes L99]
Length = 896
Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|46906896|ref|YP_013285.1| phage infection protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|46880162|gb|AAT03462.1| phage infection protein [Listeria monocytogenes serotype 4b str.
F2365]
Length = 896
Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|47095212|ref|ZP_00232823.1| phage infection protein [Listeria monocytogenes str. 1/2a F6854]
gi|254900116|ref|ZP_05260040.1| hypothetical protein LmonJ_09895 [Listeria monocytogenes J0161]
gi|254911330|ref|ZP_05261342.1| phage infection protein [Listeria monocytogenes J2818]
gi|254935657|ref|ZP_05267354.1| phage infection protein [Listeria monocytogenes F6900]
gi|47016283|gb|EAL07205.1| phage infection protein [Listeria monocytogenes str. 1/2a F6854]
gi|258608239|gb|EEW20847.1| phage infection protein [Listeria monocytogenes F6900]
gi|293589266|gb|EFF97600.1| phage infection protein [Listeria monocytogenes J2818]
Length = 896
Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|47091609|ref|ZP_00229405.1| phage infection protein [Listeria monocytogenes str. 4b H7858]
gi|254932074|ref|ZP_05265433.1| phage infection protein [Listeria monocytogenes HPB2262]
gi|47019928|gb|EAL10665.1| phage infection protein [Listeria monocytogenes str. 4b H7858]
gi|293583629|gb|EFF95661.1| phage infection protein [Listeria monocytogenes HPB2262]
gi|332311071|gb|EGJ24166.1| Phage infection protein [Listeria monocytogenes str. Scott A]
Length = 896
Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|16802692|ref|NP_464177.1| hypothetical protein lmo0650 [Listeria monocytogenes EGD-e]
gi|224498731|ref|ZP_03667080.1| hypothetical protein LmonF1_03116 [Listeria monocytogenes Finland
1988]
gi|224502048|ref|ZP_03670355.1| hypothetical protein LmonFR_05947 [Listeria monocytogenes FSL
R2-561]
gi|254830362|ref|ZP_05235017.1| hypothetical protein Lmon1_03337 [Listeria monocytogenes 10403S]
gi|284800977|ref|YP_003412842.1| hypothetical protein LM5578_0725 [Listeria monocytogenes 08-5578]
gi|284994119|ref|YP_003415887.1| hypothetical protein LM5923_0680 [Listeria monocytogenes 08-5923]
gi|16410039|emb|CAC98728.1| lmo0650 [Listeria monocytogenes EGD-e]
gi|284056539|gb|ADB67480.1| hypothetical protein LM5578_0725 [Listeria monocytogenes 08-5578]
gi|284059586|gb|ADB70525.1| hypothetical protein LM5923_0680 [Listeria monocytogenes 08-5923]
Length = 896
Score = 36.0 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|254824074|ref|ZP_05229075.1| phage infection protein [Listeria monocytogenes FSL J1-194]
gi|293593306|gb|EFG01067.1| phage infection protein [Listeria monocytogenes FSL J1-194]
Length = 896
Score = 36.0 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|254853149|ref|ZP_05242497.1| phage infection protein [Listeria monocytogenes FSL R2-503]
gi|300764455|ref|ZP_07074448.1| phage infection protein [Listeria monocytogenes FSL N1-017]
gi|258606501|gb|EEW19109.1| phage infection protein [Listeria monocytogenes FSL R2-503]
gi|300514809|gb|EFK41863.1| phage infection protein [Listeria monocytogenes FSL N1-017]
Length = 896
Score = 36.0 bits (82), Expect = 5.4, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 41/138 (29%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDFHHQV---FYALVKSYGTIPIGQELNFGNIFSSF 171
+ A +P + + + L + V + + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|296455137|ref|YP_003662281.1| virulence factor MVIN family protein [Bifidobacterium longum subsp.
longum JDM301]
gi|296184569|gb|ADH01451.1| virulence factor MVIN family protein [Bifidobacterium longum subsp.
longum JDM301]
Length = 1290
Score = 36.0 bits (82), Expect = 5.5, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 44/154 (28%)
Query: 41 CFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSV 100
A++ S + P + +I N + + + L + + +
Sbjct: 301 LIAVSVSTAMFPKISRSIAAANLDEARHDLVSALNNVGLLIIFFAAAMIVFPEPIIRALL 360
Query: 101 ISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ 160
S ++ + S + PL S +I D H A+++ T
Sbjct: 361 PSVSMDETMLISYALIALSMGIPLGSAFLLIQRTFYAFEDGLHPFLSAVMQYGFTSVFMI 420
Query: 161 ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+V + + + L+ P +
Sbjct: 421 IGMMVLPPEHWVLGIACSVTLGGLLALPLTLMML 454
>gi|190694825|gb|ACE88960.1| HrcT [Pseudomonas fluorescens]
Length = 136
Score = 35.6 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)
Query: 7 IIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNR 66
+ +L + + R+ C L+ +I +R +++ P + ++ Q
Sbjct: 8 EYLPTLLVAMARIYPCAFLVAAFCFQHIRGMLRHTIVAVMALLPAPAIHVMLEGQEHSAL 67
Query: 67 AYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNS 126
LV+ EL LG + G+L+ + + G+++ G + S TP
Sbjct: 68 M-LGGLVLKELALGLLLGVLLSMPFWLFESVGALLDNQRGALAGGQLNPSLGPDATPAGH 126
Query: 127 LIGIIGLLAL 136
L + + L
Sbjct: 127 LFKQLAIFLL 136
>gi|291517745|emb|CBK71361.1| Uncharacterized membrane protein, putative virulence factor
[Bifidobacterium longum subsp. longum F8]
Length = 1290
Score = 35.6 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 44/154 (28%)
Query: 41 CFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSV 100
A++ S + P + +I N + + + L + V +
Sbjct: 301 LIAVSVSTAMFPKISRSIAAANLDEARHDLVSALNNVGLLIIFFAAAMVVFPEPIIRALL 360
Query: 101 ISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ 160
S ++ + S + PL S +I D H A+++ T
Sbjct: 361 PSVSMDETMLISYALIALSVGIPLGSAFLLIQRTFYAFEDGLHPFLSAVMQYGFTSVFMM 420
Query: 161 ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+V + + + L+ P +
Sbjct: 421 IGMMVLPPEHWVLGIACSVTLGGLLALPLTLMML 454
>gi|110638900|ref|YP_679109.1| cation/multidrug efflux pump [Cytophaga hutchinsonii ATCC 33406]
gi|110281581|gb|ABG59767.1| cation/multidrug efflux pump [Cytophaga hutchinsonii ATCC 33406]
Length = 1134
Score = 35.6 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 68/193 (35%), Gaps = 15/193 (7%)
Query: 54 LWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSM 113
L D + + +++ ++ + +L + G ++ V L F G+ + +GL++ SM
Sbjct: 325 LPDGLKITITGDQSDATRTTLHDLINTIIIGFILVVIILMF-FMGTTNAIFVGLSVPLSM 383
Query: 114 GISDSLAETPLNSLIGIIGLLALWVIDFHHQ--VFYALVKSYGTIPIGQELNFGNIFSSF 171
I+ + + + +I L A + + ++ G+ +
Sbjct: 384 AIAF-IVLPTMGITLNMIVLFAFLLALGIVVDDAIVVIENTHRIYENGKVPIKQAAKQAA 442
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLS 231
+ F + +PF+ G++ K + P + + L L
Sbjct: 443 GEVFMPVFSGTMTTLAPFVPLLF----WKGIIGK-------FMYFLPVTLIVTLLASLLV 491
Query: 232 IEIIVYQFSHSFL 244
II F+ F+
Sbjct: 492 AYIINPVFAVDFM 504
>gi|313639122|gb|EFS04089.1| phage infection protein [Listeria seeligeri FSL S4-171]
Length = 879
Score = 35.6 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDF--HHQVFYALVKSYGTIPIGQE-LNFGNIFSSF 171
+ A +P + + + L + +V + Y + +
Sbjct: 675 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFNHYHRYFGRLLTFLSIGLMQAV 734
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 735 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 794
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 795 AGGNFPIQVSPPFFQAIY 812
>gi|51587296|emb|CAE53677.1| putative HrcT [Pseudomonas fluorescens bv. I]
Length = 176
Score = 35.6 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 8 IMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRA 67
+++S+ L + R+ L+P ++ R ++ P + + + VN
Sbjct: 33 LLLSIALGMARIYPVAYLVPVFCFQHLRGLPRHAVVFTLGMLPAPGIRQAL-IDAQVNWL 91
Query: 68 YYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVIST 103
+ L+ EL LG + G+L+ + + G +
Sbjct: 92 SLAGLMFKELVLGFLLGVLLAMPFWLYEXGGCLAGQ 127
>gi|315301870|ref|ZP_07872895.1| phage infection protein [Listeria ivanovii FSL F6-596]
gi|313629773|gb|EFR97881.1| phage infection protein [Listeria ivanovii FSL F6-596]
Length = 896
Score = 35.2 bits (80), Expect = 7.3, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDF--HHQVFYALVKSYGTIPIGQE-LNFGNIFSSF 171
+ A +P + + + L + +V + Y + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFNHYHRYFGRLLTFLSIGLMQAL 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|290975445|ref|XP_002670453.1| predicted protein [Naegleria gruberi]
gi|284084012|gb|EFC37709.1| predicted protein [Naegleria gruberi]
Length = 1353
Score = 35.2 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 35/271 (12%), Positives = 79/271 (29%), Gaps = 52/271 (19%)
Query: 7 IIMMSLFLIVCRVGSCIML-------LPGLSMSYIPMQVRLCFAMAFSI----VLLPFLW 55
+++ ++ L+ C V S + LP LS + I + F + I +++ +
Sbjct: 1030 VVLTAISLLFCIVLSLLTAPDSVSKHLPALSETGIFPPTKYIFTASLVIPSICLIVGAIL 1089
Query: 56 DTIDLQNFVNRAY--------------YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVI 101
I + + L + + G + + G VI
Sbjct: 1090 QFITTKEKLTSLDHQRHTLNYCNGCFRMGWLSIASCIFALISGFCLLGLGIVPIMGGEVI 1149
Query: 102 S----------TAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVK 151
T + ++ S E ++I +I F H V +
Sbjct: 1150 DDSLLSNSTTSTTVSFITSSTSQQSAESIEILPYTIIHLIFTFFFMSTVFIHMVLNTIFN 1209
Query: 152 SY--GTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIG-----LLN 204
I +++ + V+ + P F + +++ ++N
Sbjct: 1210 VLYDKKISPKKKILNPWVIVKIVSSCS------FLVVGPIFSFIMGILVTVTCSQTEVIN 1263
Query: 205 KLVPQIPIYFISTPY----LIGLGSLFLCLS 231
K P + ++ + I L L+
Sbjct: 1264 KTCPLMNLFQLFLGALSQYSIVASILVFMLT 1294
>gi|289433933|ref|YP_003463805.1| phage infection protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170177|emb|CBH26717.1| phage infection protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 896
Score = 35.2 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 4/138 (2%)
Query: 115 ISDSLAETPLNSLIGIIGLLALWVIDF--HHQVFYALVKSYGTIPIGQE-LNFGNIFSSF 171
+ A +P + + + L + +V + Y + +
Sbjct: 692 PNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFNHYHRYFGRLLTFLSIGLMQAV 751
Query: 172 VNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIY-FISTPYLIGLGSLFLCL 230
+ L F++ + ++ P L IS+ + + + ++ + I L L +
Sbjct: 752 IVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISG 811
Query: 231 SIEIIVYQFSHSFLYGFF 248
+ Q S F +
Sbjct: 812 AGGNFPIQVSPPFFQAIY 829
>gi|229816986|ref|ZP_04447268.1| hypothetical protein BIFANG_02241 [Bifidobacterium angulatum DSM
20098]
gi|229785731|gb|EEP21845.1| hypothetical protein BIFANG_02241 [Bifidobacterium angulatum DSM
20098]
Length = 1227
Score = 35.2 bits (80), Expect = 8.7, Method: Composition-based stats.
Identities = 17/154 (11%), Positives = 40/154 (25%)
Query: 41 CFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSV 100
A++ + P + + N + + + + + + +
Sbjct: 297 LIAVSIGTAIFPKISRAVADNNLDEARMDLSVALRNVGILMMFFTAAYLVMPVQIIIALL 356
Query: 101 ISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQ 160
S + + + PL S +I D H + LV + I
Sbjct: 357 PSVNLHEAWLIAGPMMMLALGLPLTSAYLLIQRTFFAFEDGMHPFLFQLVMNVIQIVFSL 416
Query: 161 ELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYI 194
+ + + + LS P L +
Sbjct: 417 TCMRILDPKDWTLCVGLSMTVGYALSFPLLVIML 450
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.321 0.152 0.409
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,583,497,757
Number of Sequences: 14124377
Number of extensions: 133811154
Number of successful extensions: 2006724
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 44586
Number of HSP's that attempted gapping in prelim test: 1947401
Number of HSP's gapped (non-prelim): 94292
length of query: 248
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 113
effective length of database: 2,936,002,735
effective search space: 331768309055
effective search space used: 331768309055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.8 bits)
S2: 80 (35.2 bits)