RPSBLAST alignment for GI: 254780511 and conserved domain: TIGR01401
>gnl|CDD|130468 TIGR01401, fliR_like_III, type III secretion protein SpaR/YscT/HrcT. This model represents members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (TIGRFAMs:TIGR01400). Length = 253
Score = 55.4 bits (134), Expect = 2e-08
Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 11/236 (4%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++L L R+ +LLP + +P +R + ++ + P + L
Sbjct: 8 LIALALAFARILPMFLLLPFFASGSLPGLIRNGVIVVLALPIAPHIST--ALLALDITFS 65
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ L++ E+ +G + G L+ + + G +I G L + + + +PL
Sbjct: 66 LAGLLLKEVIIGLLLGFLLALPFWIFEAAGFLIDNQRGATLSSIFNPATGVDTSPL---- 121
Query: 129 GIIGLLALWVIDFHHQVFYALVK----SYGTIPIGQELNFGNIFSSFV-NMLQTTFMIML 183
G++ L VI L+ SY P+ LNF SFV + L + L
Sbjct: 122 GVLFNQFLIVIFLTSGGMEFLLGALYESYRLWPLTAFLNFSAQGLSFVLSQLDQMMALAL 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
L++P + + +++GLL++ PQ+ ++ +S P L L L L ++
Sbjct: 182 LLAAPVIIVLFLIELALGLLSRFAPQLNVFILSLPIKSLLALLILLLYFATLLEHI 237