RPSBLAST alignment for GI: 254780511 and conserved domain: TIGR01401

>gnl|CDD|130468 TIGR01401, fliR_like_III, type III secretion protein SpaR/YscT/HrcT. This model represents members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (TIGRFAMs:TIGR01400). Length = 253
 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 11/236 (4%)

Query: 9   MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
           +++L L   R+    +LLP  +   +P  +R    +  ++ + P +     L        
Sbjct: 8   LIALALAFARILPMFLLLPFFASGSLPGLIRNGVIVVLALPIAPHIST--ALLALDITFS 65

Query: 69  YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
            + L++ E+ +G + G L+ +     +  G +I    G  L +    +  +  +PL    
Sbjct: 66  LAGLLLKEVIIGLLLGFLLALPFWIFEAAGFLIDNQRGATLSSIFNPATGVDTSPL---- 121

Query: 129 GIIGLLALWVIDFHHQVFYALVK----SYGTIPIGQELNFGNIFSSFV-NMLQTTFMIML 183
           G++    L VI         L+     SY   P+   LNF     SFV + L     + L
Sbjct: 122 GVLFNQFLIVIFLTSGGMEFLLGALYESYRLWPLTAFLNFSAQGLSFVLSQLDQMMALAL 181

Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
            L++P +    +  +++GLL++  PQ+ ++ +S P    L  L L L    ++   
Sbjct: 182 LLAAPVIIVLFLIELALGLLSRFAPQLNVFILSLPIKSLLALLILLLYFATLLEHI 237