RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein
FliR [Candidatus Liberibacter asiaticus str. psy62]
         (248 letters)



>gnl|CDD|31870 COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell
           motility and secretion / Intracellular trafficking and
           secretion].
          Length = 258

 Score =  112 bits (283), Expect = 6e-26
 Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 3/233 (1%)

Query: 11  SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
           + FL   RV + +M +P  S   IP +VRL  A+A S  +LP L         +    + 
Sbjct: 14  AFFLPFVRVLAFLMTMPFFSERSIPARVRLGLALALSFAVLPLLPAVPAPLFSL---EFL 70

Query: 71  KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
            L + E+ +G   G   ++    LQF G +IS  +GL+  T +  S       L   +  
Sbjct: 71  LLALSEILIGLALGFFAQLLFAALQFAGEIISMQMGLSFATMVDPSSGEQSPLLGQFLNF 130

Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
           + LL    +D H  +   LV S+  +P+G      N F      L   F+I LRL+ P +
Sbjct: 131 LALLLFLSLDGHLLLILGLVDSFKALPVGGFFLNDNAFLLLAKALSAIFLIGLRLALPII 190

Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
              ++ N+++GLLN+L PQ+ ++FI  P  I +G L L L + +I   F H F
Sbjct: 191 ALLLLVNLALGLLNRLAPQLNVFFIGFPLKIAVGLLLLYLILPLIAPVFKHLF 243


>gnl|CDD|144784 pfam01311, Bac_export_1, Bacterial export proteins, family 1.  This
           family includes the following members; FliR, MopE, SsaT,
           YopT, Hrp, HrcT and SpaR All of these members export
           proteins, that do not possess signal peptides, through
           the membrane. Although the proteins that these exporters
           move may be different, the exporters are thought to
           function in similar ways.
          Length = 249

 Score = 80.4 bits (199), Expect = 4e-16
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 4/239 (1%)

Query: 12  LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71
           LFL   RV +    LP  S   +   VR   A+  ++++ P + +          A    
Sbjct: 10  LFLAFVRVLALFSTLPFFSDRSLGGVVRNGVALLLALIVAPSIPNQAAPIISE--AQLIL 67

Query: 72  LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131
           LV+ E  LG + G  + +        G +I    G  + +S   +     +P+   +  +
Sbjct: 68  LVLKEALLGLLLGFFLSIPFWAFHAAGELIDNQRGATMASSFDPASGSQSSPVGQFLNQL 127

Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRLSSPF 189
            +L       H  +  AL  SY   P+GQ L   N       +  L   F I L L++P 
Sbjct: 128 AILLFLASGGHLLLLSALYDSYQIWPVGQFLPNMNAQAAKFLLKALSQLFSIALLLAAPV 187

Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248
           +   ++ ++++GLL++  PQ+ ++ +S P    +G L L L +  I+  F       F 
Sbjct: 188 IILLLLIDLALGLLSRFAPQLNVFVLSFPIKSAVGLLLLALYLPYILPLFKEELSLLFD 246


>gnl|CDD|34401 COG4791, EscT, Type III secretory pathway, component EscT
           [Intracellular trafficking and secretion].
          Length = 259

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 46/238 (19%), Positives = 105/238 (44%), Gaps = 3/238 (1%)

Query: 4   SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63
             + ++++L L++ R      +LP L+   +   +R   A++ ++ +LP +     LQ  
Sbjct: 5   EIQTLLVALALLLARPLGIFSILPVLNAGLLSGLIRNGIAISLALPVLPHVLQ--ALQIL 62

Query: 64  VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123
           ++    + L++ E+ +G + G +  +     Q  G +I    G  + +          +P
Sbjct: 63  LSAFQLAGLLLKEILIGALIGFVASIPFWAAQAAGFIIDNQRGATILSIFNPLLGAETSP 122

Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIM 182
              L+    ++  +       +   L +SY + P+G    F      F+ N      ++ 
Sbjct: 123 FGVLLTQFAIVIFFASGGILTLLGVLYESYESWPLGAFYPFELSQLVFLLNEWDQILLLA 182

Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
           L L++P +   ++ ++ +GLLN+  PQ+ ++ +S P    +  L L L +  ++  FS
Sbjct: 183 LVLAAPVIIAMLLADLFLGLLNRFAPQLNVFALSLPIKSAVALLLLLLYLGYLLPHFS 240


>gnl|CDD|177015 CHL00076, chlB, photochlorophyllide reductase subunit B.
          Length = 513

 Score = 28.1 bits (63), Expect = 2.2
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)

Query: 48  IVLLPFLWDTI---DLQNFVNRA 67
           IVL P    +I   DLQNFV+RA
Sbjct: 89  IVLTPTCTSSILQEDLQNFVDRA 111


>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
           semialdehyde dehydrogenase, ALDH family members 7A1 and
           7B.  Alpha-aminoadipic semialdehyde dehydrogenase
           (AASADH, EC=1.2.1.31), also known as ALDH7A1,
           Antiquitin-1, ALDH7B, or
           delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
           is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
           the pipecolic acid pathway of lysine catabolism,
           catalyzing the oxidation of alpha-aminoadipic
           semialdehyde to alpha-aminoadipate.  Arabidopsis
           thaliana ALDH7B4 appears to be an
           osmotic-stress-inducible ALDH gene encoding a
           turgor-responsive or stress-inducible ALDH. The
           Streptomyces clavuligerus P6CDH appears to be involved
           in cephamycin biosynthesis, catalyzing the second stage
           of the two-step conversion of lysine to
           alpha-aminoadipic acid.  The ALDH7A1 enzyme and others
           in this group have been observed as tetramers, yet the
           bacterial P6CDH enzyme has been reported as a monomer.
          Length = 474

 Score = 27.2 bits (61), Expect = 4.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 142 HHQVFYALVKSYGTIPIGQELNFGNI 167
           + +V   L K+Y  + IG  L+ G +
Sbjct: 291 YDEVLERLKKAYKQVRIGDPLDDGTL 316


>gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase
           (D-isomer-specific 2-hydroxy acid dehydrogenase
           superfamily) [Energy production and conversion].
          Length = 336

 Score = 26.9 bits (59), Expect = 4.8
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 54/199 (27%)

Query: 13  FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYY 69
            +   R+   +      +   I        A++ ++ L+  +    D +DL+    R   
Sbjct: 57  RIADSRIAISVPFTGAFTKELIS-------ALSPNLKLIVTMSVGYDHVDLEAARKRG-- 107

Query: 70  SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS----------- 118
                            IRV  +    T  V   A+ L L      S+            
Sbjct: 108 -----------------IRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGW 150

Query: 119 -----LAETPLNSLIGIIGL------LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167
                L        +GI+GL      +A  +  F   + Y    S   +P  +   +   
Sbjct: 151 AGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILY---HSRTQLPPEEAYEYYAE 207

Query: 168 FSSFVNMLQTTFMIMLRLS 186
           F     +L  + +I++   
Sbjct: 208 FVDIEELLANSDVIVVNCP 226


>gnl|CDD|36588 KOG1374, KOG1374, KOG1374, Gamma tubulin [Cytoskeleton].
          Length = 448

 Score = 26.4 bits (58), Expect = 7.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218
              L+  N   S +N L +T  IM   ++   +   + N  IGL   L+P   ++F+ T 
Sbjct: 215 ADRLHIQNPTFSQINQLVST--IMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTG 272

Query: 219 Y 219
           Y
Sbjct: 273 Y 273


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.334    0.148    0.450 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,129,150
Number of extensions: 176227
Number of successful extensions: 959
Number of sequences better than 10.0: 1
Number of HSP's gapped: 940
Number of HSP's successfully gapped: 111
Length of query: 248
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,297,318
Effective search space: 674678926
Effective search space used: 674678926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.3 bits)