RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62] (248 letters) >gnl|CDD|31870 COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 258 Score = 112 bits (283), Expect = 6e-26 Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 3/233 (1%) Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70 + FL RV + +M +P S IP +VRL A+A S +LP L + + Sbjct: 14 AFFLPFVRVLAFLMTMPFFSERSIPARVRLGLALALSFAVLPLLPAVPAPLFSL---EFL 70 Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130 L + E+ +G G ++ LQF G +IS +GL+ T + S L + Sbjct: 71 LLALSEILIGLALGFFAQLLFAALQFAGEIISMQMGLSFATMVDPSSGEQSPLLGQFLNF 130 Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190 + LL +D H + LV S+ +P+G N F L F+I LRL+ P + Sbjct: 131 LALLLFLSLDGHLLLILGLVDSFKALPVGGFFLNDNAFLLLAKALSAIFLIGLRLALPII 190 Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 ++ N+++GLLN+L PQ+ ++FI P I +G L L L + +I F H F Sbjct: 191 ALLLLVNLALGLLNRLAPQLNVFFIGFPLKIAVGLLLLYLILPLIAPVFKHLF 243 >gnl|CDD|144784 pfam01311, Bac_export_1, Bacterial export proteins, family 1. This family includes the following members; FliR, MopE, SsaT, YopT, Hrp, HrcT and SpaR All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways. Length = 249 Score = 80.4 bits (199), Expect = 4e-16 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 4/239 (1%) Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSK 71 LFL RV + LP S + VR A+ ++++ P + + A Sbjct: 10 LFLAFVRVLALFSTLPFFSDRSLGGVVRNGVALLLALIVAPSIPNQAAPIISE--AQLIL 67 Query: 72 LVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGII 131 LV+ E LG + G + + G +I G + +S + +P+ + + Sbjct: 68 LVLKEALLGLLLGFFLSIPFWAFHAAGELIDNQRGATMASSFDPASGSQSSPVGQFLNQL 127 Query: 132 GLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI--FSSFVNMLQTTFMIMLRLSSPF 189 +L H + AL SY P+GQ L N + L F I L L++P Sbjct: 128 AILLFLASGGHLLLLSALYDSYQIWPVGQFLPNMNAQAAKFLLKALSQLFSIALLLAAPV 187 Query: 190 LFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248 + ++ ++++GLL++ PQ+ ++ +S P +G L L L + I+ F F Sbjct: 188 IILLLLIDLALGLLSRFAPQLNVFVLSFPIKSAVGLLLLALYLPYILPLFKEELSLLFD 246 >gnl|CDD|34401 COG4791, EscT, Type III secretory pathway, component EscT [Intracellular trafficking and secretion]. Length = 259 Score = 56.8 bits (137), Expect = 5e-09 Identities = 46/238 (19%), Positives = 105/238 (44%), Gaps = 3/238 (1%) Query: 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNF 63 + ++++L L++ R +LP L+ + +R A++ ++ +LP + LQ Sbjct: 5 EIQTLLVALALLLARPLGIFSILPVLNAGLLSGLIRNGIAISLALPVLPHVLQ--ALQIL 62 Query: 64 VNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETP 123 ++ + L++ E+ +G + G + + Q G +I G + + +P Sbjct: 63 LSAFQLAGLLLKEILIGALIGFVASIPFWAAQAAGFIIDNQRGATILSIFNPLLGAETSP 122 Query: 124 LNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFV-NMLQTTFMIM 182 L+ ++ + + L +SY + P+G F F+ N ++ Sbjct: 123 FGVLLTQFAIVIFFASGGILTLLGVLYESYESWPLGAFYPFELSQLVFLLNEWDQILLLA 182 Query: 183 LRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240 L L++P + ++ ++ +GLLN+ PQ+ ++ +S P + L L L + ++ FS Sbjct: 183 LVLAAPVIIAMLLADLFLGLLNRFAPQLNVFALSLPIKSAVALLLLLLYLGYLLPHFS 240 >gnl|CDD|177015 CHL00076, chlB, photochlorophyllide reductase subunit B. Length = 513 Score = 28.1 bits (63), Expect = 2.2 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%) Query: 48 IVLLPFLWDTI---DLQNFVNRA 67 IVL P +I DLQNFV+RA Sbjct: 89 IVLTPTCTSSILQEDLQNFVDRA 111 >gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer. Length = 474 Score = 27.2 bits (61), Expect = 4.0 Identities = 8/26 (30%), Positives = 14/26 (53%) Query: 142 HHQVFYALVKSYGTIPIGQELNFGNI 167 + +V L K+Y + IG L+ G + Sbjct: 291 YDEVLERLKKAYKQVRIGDPLDDGTL 316 >gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]. Length = 336 Score = 26.9 bits (59), Expect = 4.8 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 54/199 (27%) Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLW---DTIDLQNFVNRAYY 69 + R+ + + I A++ ++ L+ + D +DL+ R Sbjct: 57 RIADSRIAISVPFTGAFTKELIS-------ALSPNLKLIVTMSVGYDHVDLEAARKRG-- 107 Query: 70 SKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS----------- 118 IRV + T V A+ L L S+ Sbjct: 108 -----------------IRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGW 150 Query: 119 -----LAETPLNSLIGIIGL------LALWVIDFHHQVFYALVKSYGTIPIGQELNFGNI 167 L +GI+GL +A + F + Y S +P + + Sbjct: 151 AGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILY---HSRTQLPPEEAYEYYAE 207 Query: 168 FSSFVNMLQTTFMIMLRLS 186 F +L + +I++ Sbjct: 208 FVDIEELLANSDVIVVNCP 226 >gnl|CDD|36588 KOG1374, KOG1374, KOG1374, Gamma tubulin [Cytoskeleton]. Length = 448 Score = 26.4 bits (58), Expect = 7.5 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 159 GQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 L+ N S +N L +T IM ++ + + N IGL L+P ++F+ T Sbjct: 215 ADRLHIQNPTFSQINQLVST--IMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTG 272 Query: 219 Y 219 Y Sbjct: 273 Y 273 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.334 0.148 0.450 Gapped Lambda K H 0.267 0.0779 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,129,150 Number of extensions: 176227 Number of successful extensions: 959 Number of sequences better than 10.0: 1 Number of HSP's gapped: 940 Number of HSP's successfully gapped: 111 Length of query: 248 Length of database: 6,263,737 Length adjustment: 91 Effective length of query: 157 Effective length of database: 4,297,318 Effective search space: 674678926 Effective search space used: 674678926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 56 (25.3 bits)