RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein
FliR [Candidatus Liberibacter asiaticus str. psy62]
(248 letters)
>gnl|CDD|183741 PRK12780, fliR, flagellar biosynthesis protein FliR; Reviewed.
Length = 251
Score = 147 bits (373), Expect = 2e-36
Identities = 81/246 (32%), Positives = 133/246 (54%), Gaps = 5/246 (2%)
Query: 1 MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
M++ ++ +FLI CR+G C+M++PG S +P+QVRL A++ S+ + P L
Sbjct: 1 MSLPLGDSVLGVFLIFCRIGGCLMVVPGYSSPRVPVQVRLFIALSVSLAVTPLLLPL--F 58
Query: 61 QNFVNRAYYSKLVMV---ELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISD 117
+ F+ A ++ ++ E G + GLL RV+ L+ + ++T IGL + D
Sbjct: 59 RPFLEGAAPAETLLWIGSETLTGLLIGLLGRVFFFALETMATAVATMIGLGSIPGTPVED 118
Query: 118 SLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQT 177
+ A L SLI + + D H ++F LV SY IP G+ V+ L
Sbjct: 119 TEAIPALVSLIVLTATALFFATDLHWELFRGLVASYDRIPPGEGFGGQTALVQLVDQLSE 178
Query: 178 TFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVY 237
F + LR++SPF+ + ++ N+++GL+NKL P IP+YFISTP+++ G L L L +
Sbjct: 179 AFTLALRIASPFIIYSVIVNLAVGLVNKLTPTIPVYFISTPFVLFGGLLLLYLLSSEFLT 238
Query: 238 QFSHSF 243
QFS +
Sbjct: 239 QFSLGY 244
>gnl|CDD|180211 PRK05701, fliR, flagellar biosynthesis protein FliR; Reviewed.
Length = 242
Score = 142 bits (362), Expect = 6e-35
Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 5/233 (2%)
Query: 12 LFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDT-IDLQNFVNRAYYS 70
FL R+G+ +M +PG S IP +V+L A+A + + P L + L +
Sbjct: 8 FFLPFVRIGALLMTMPGFSERSIPARVKLGLALALTFAVAPLLPVPDVPLFSLD----LL 63
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
LV+ E+ +G GL+ ++ LQF G +I +GL+ + + + L + +
Sbjct: 64 LLVIQEILIGLALGLVAQILFAALQFAGQIIDMQMGLSFASVVDPTSGQQSPLLGQFLTL 123
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+ LL +D HH + ALV S+ T+PIG L GN F L F+I L+L+ P +
Sbjct: 124 LALLLFLALDGHHLLIRALVDSFETLPIGGFLLNGNAFLLLAKALSAMFLIGLQLALPII 183
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ N+++GL+N+ PQ+ I+ I P I +G L L L + ++ F + F
Sbjct: 184 VLLLLVNLALGLINRTAPQLNIFVIGFPLKITVGLLLLALILPALMPVFENLF 236
>gnl|CDD|130467 TIGR01400, fliR, flagellar biosynthetic protein FliR. This model
recognizes the FliR protein of bacterial flagellar
biosynthesis. It distinguishes FliR from the homologous
proteins bacterial type III protein secretion systems,
known by names such as YopT, EscT, and HrcT.
Length = 245
Score = 104 bits (261), Expect = 2e-23
Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 1/236 (0%)
Query: 13 FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
FL RVG+ +M +P S +P++VRL A+A + ++LPFL + N + ++ L
Sbjct: 5 FLPFVRVGAFLMTMPFFSERLVPVRVRLYLALALTFIVLPFLPPSPPPVN-LFSLFFVLL 63
Query: 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
++ E+ +G + G ++++ G +IS +GL + + S L ++ ++
Sbjct: 64 LLQEILIGLLIGFILQLLFAAFVLAGEIISMQMGLGFASMVDPSSGEQTPILGQILYLLA 123
Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
LL +D HH + LV S+ ++P+G GN F + L F++ L L+ P +
Sbjct: 124 LLLFLALDGHHLLILGLVDSFKSLPVGSFFLNGNFFELILKALSDMFLLGLLLALPIIAA 183
Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248
++ N+ +GL+N+ PQI I+ I P I LG + L L + + F F
Sbjct: 184 LLLVNLVLGLVNRAAPQINIFSIGFPLKIALGLILLYLILPGMAILFKDLFEELLE 239
>gnl|CDD|183736 PRK12772, PRK12772, bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional.
Length = 609
Score = 69.7 bits (171), Expect = 7e-13
Identities = 48/233 (20%), Positives = 110/233 (47%), Gaps = 1/233 (0%)
Query: 11 SLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYS 70
+L LI R+ S +++P P V++ A+ + +L+P + D + N
Sbjct: 9 ALILIFLRIFSFFIMVPIFFPKGTPNIVKVSLALIIAYMLVPGI-DYSSVNTINNSTLLI 67
Query: 71 KLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGI 130
+ E+ G + G + + + ++ GS++ +G ++ T + + T + L+
Sbjct: 68 FYCINEILTGLILGFITNLCFVCVRIAGSMMDLQVGFSMMTMFDPTSNSNTTLIERLLYW 127
Query: 131 IGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFL 190
+ ++ID HH + ALV+S+ I IG+ +N+ F I ++++ P +
Sbjct: 128 FSTVIFFIIDGHHMLIRALVESFNVIKIGKFFLNQESIMHVINVFIQYFYIGIKIAIPIV 187
Query: 191 FFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243
++ ++++GL+++ VPQ+ I + P I +G +++ + + S +F
Sbjct: 188 LIILITDLTLGLISRTVPQLNIMILGLPIKILVGLTAFVIALPLFLKVISSAF 240
>gnl|CDD|130468 TIGR01401, fliR_like_III, type III secretion protein
SpaR/YscT/HrcT. This model represents members of
bacterial type III secretion systems homologous to the
flagellar biosynthetic protein FliR
(TIGRFAMs:TIGR01400).
Length = 253
Score = 55.4 bits (134), Expect = 2e-08
Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 11/236 (4%)
Query: 9 MMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAY 68
+++L L R+ +LLP + +P +R + ++ + P + L
Sbjct: 8 LIALALAFARILPMFLLLPFFASGSLPGLIRNGVIVVLALPIAPHIST--ALLALDITFS 65
Query: 69 YSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLI 128
+ L++ E+ +G + G L+ + + G +I G L + + + +PL
Sbjct: 66 LAGLLLKEVIIGLLLGFLLALPFWIFEAAGFLIDNQRGATLSSIFNPATGVDTSPL---- 121
Query: 129 GIIGLLALWVIDFHHQVFYALVK----SYGTIPIGQELNFGNIFSSFV-NMLQTTFMIML 183
G++ L VI L+ SY P+ LNF SFV + L + L
Sbjct: 122 GVLFNQFLIVIFLTSGGMEFLLGALYESYRLWPLTAFLNFSAQGLSFVLSQLDQMMALAL 181
Query: 184 RLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQF 239
L++P + + +++GLL++ PQ+ ++ +S P L L L L ++
Sbjct: 182 LLAAPVIIVLFLIELALGLLSRFAPQLNVFILSLPIKSLLALLILLLYFATLLEHI 237
>gnl|CDD|185247 PRK15349, PRK15349, type III secretion system protein SsaT;
Provisional.
Length = 259
Score = 32.2 bits (73), Expect = 0.11
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 3/198 (1%)
Query: 44 MAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVIST 103
M+ + +LP ++ + + + LV E+ +G + G V + G ++ T
Sbjct: 45 MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT 104
Query: 104 AIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQ-VFYALVKSYGTIPIGQEL 162
G + T S AET L L+ L ++ I + + L +SY +P G+ L
Sbjct: 105 LRGATMGTIFN-STIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL 163
Query: 163 NFGNIFSSFVNM-LQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLI 221
F F ++ +T + + + S P + ++ ++++GLLN+ Q+ ++F S P
Sbjct: 164 LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS 223
Query: 222 GLGSLFLCLSIEIIVYQF 239
L L L +S ++ +
Sbjct: 224 ILVLLTLLISFPYALHHY 241
>gnl|CDD|162842 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose
trehalohydrolase. Members of this family are the
trehalose biosynthetic enzyme malto-oligosyltrehalose
trehalohydrolase, formally known as
4-alpha-D-{(1->4)-alpha-D-glucano}trehalose
trehalohydrolase (EC 3.2.1.141). It is the TreZ protein
of the TreYZ pathway for trehalose biosynthesis, and
alternative to the OtsAB system.
Length = 542
Score = 28.5 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 119 LAETPLN--SLI-----GIIGLLALWVIDFHHQV 145
+AE+ LN SL+ G GL A W DFHH +
Sbjct: 278 IAESDLNDPSLVTPREDGGYGLDAQWNDDFHHAL 311
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.334 0.148 0.450
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,056,009
Number of extensions: 263200
Number of successful extensions: 991
Number of sequences better than 10.0: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 64
Length of query: 248
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,028,145
Effective search space: 632418765
Effective search space used: 632418765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.4 bits)