RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62] (248 letters) >d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]} Length = 109 Score = 25.9 bits (57), Expect = 3.5 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 98 GSVISTAIGLNLQTSMG-ISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTI 156 G+++ A+ + + T+ + ++ + LI IG+ A + I Sbjct: 3 GNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQSDVGILR----------IGI 52 Query: 157 PIGQELNFGNIFSSFVNMLQTTFMIMLRL 185 GQ ++ + S+ +N F + + Sbjct: 53 GGGQTIDLNVLLSAAINFFLIAFAVYFLV 81 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.334 0.148 0.450 Gapped Lambda K H 0.267 0.0522 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 894,456 Number of extensions: 39001 Number of successful extensions: 107 Number of sequences better than 10.0: 1 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 10 Length of query: 248 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 165 Effective length of database: 1,268,006 Effective search space: 209220990 Effective search space used: 209220990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 52 (24.3 bits)