HHsearch alignment for GI: 254780512 and conserved domain: PRK05910
>PRK05910 type III secretion system protein; Validated.
Probab=100.00 E-value=0 Score=1586.28 Aligned_cols=573 Identities=28% Similarity=0.416 Sum_probs=522.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10013458999999999999603847899999999999999999999513770454200489999999998554888889
Q gi|254780512|r 14 RNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRA 93 (692)
Q Consensus 14 ~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRl 93 (692)
T Consensus 3 ~~~~~~~~~~~~~v~iv~~~i~PlP~~llD~ll~~ni~~s~lill~s~y~~~pl~fS~FPslLLi~TLfRLsLniasTRl 82 (583)
T PRK05910 3 SKRGSSWKMVLIPLCILFTLLLPLPQWLLDFGLCINFALSLSIVFWVFSLRSSASAKLFPSLFLYLCLLRLGLNLASTRW 82 (583)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 74443167999999999998618978999999999999999999999973881131005499999999999998999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 88437777632678999875145013269999999999999998864575146665545442037603454787876489
Q gi|254780512|r 94 ILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGL 173 (692)
Q Consensus 94 IL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~ 173 (692)
T Consensus 83 IL~~g~-----aG~vI~aFG~FVvgGn~vVG~vvF~Il~ivqFiVITKGa~RVAEVaARFTLDaMPGKQMaIDADLnaG~ 157 (583)
T PRK05910 83 ILSSGW-----ASPLIFSLGNFFSLGSLPAATTACLLLFLVNFLVITKGSERIAEVRARFSLEALPGKQMSLDADLVSGR 157 (583)
T ss_pred HHHCCC-----CCHHHHHHHHHEECCCEEEEHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf 984688-----744999851315658545711364798666442771583288788776300468863220675865599
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999998652222012201345301058999999999888999999973998899999989998645788851
Q gi|254780512|r 174 IEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQV 253 (692)
Q Consensus 174 I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQI 253 (692)
T Consensus 158 Id~~eAr~RR~~l~~Ea~fyGAMDGAsKFVkGDAIAgiiI~~iNiiGG~~iG-----m~~~~a~~~y~lltIGDGLVsQI 232 (583)
T PRK05910 158 ASYSRVSKQKNSLLEESDFFSAMEGVFRFVKGDAIMSCILLGVNVLAATFLG-----YSSGYAVESLWLTVLGDALVSQV 232 (583)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999976566650321466632039999999999998896402-----01778887756655134699888
Q ss_pred HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999873310266237743058999998761864899999999998615786478999999999999998864432222
Q gi|254780512|r 254 PALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQR 333 (692)
Q Consensus 254 PaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~~~~~ 333 (692)
T Consensus 233 PaLliS~aaGiiVTR~~~~~~l~~~i~~ql~~~~~~l~~~a~~l~~~~lvPG~P~~~fl~~a~~~-~~~~---~~~~~~~ 308 (583)
T PRK05910 233 PALLTSCAAATLISKVGEKESLLQHLFDYYEQARQHFRVIALLLCSLACIPGAPKAPILLFAVLL-FLAY---KKPKSAE 308 (583)
T ss_pred HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHH---CCCCCCC
T ss_conf 89999987772477056754469999999844863999999999999874487079999999999-9973---3876645
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 100110002356676753001002460122101-1111234575526889999999999980987883244543778987
Q gi|254780512|r 334 LAKVAQIQEASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEK 412 (692)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~ 412 (692)
T Consensus 309 ~-------------~-------~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~R~~~a~elG~~~P~~~~~~~~~~~~- 364 (583)
T PRK05910 309 E-------------L-------SFIKERFEYVELALP---KEGTGNPYELYRAAREEIFQELGVRLPEEIVVRYVEKSP- 364 (583)
T ss_pred C-------------H-------HCCCHHHHHCCCCCC---CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-
T ss_conf 5-------------0-------004145521012488---456888899999999999997598889465642555585-
Q ss_pred EEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHH
Q ss_conf 16999748245348841783413305888767887410147668830343978845888289907058899999999999
Q gi|254780512|r 413 GYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVI 492 (692)
Q Consensus 413 ~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evi 492 (692)
T Consensus 365 --~~~~~g~~~~~~-------------------------------------------------------ev~~tHL~eii 387 (583)
T PRK05910 365 --RLSFSGQEVYLD-------------------------------------------------------ELSCEALLPIL 387 (583)
T ss_pred --CEEECCEEEECC-------------------------------------------------------CCHHHHHHHHH
T ss_conf --532277488511-------------------------------------------------------10287899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 98799987299999999997666489999863115998999999999997498654699999999875335799899999
Q gi|254780512|r 493 RNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVE 572 (692)
Q Consensus 493 r~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE 572 (692)
T Consensus 388 r~~A~ELLgrqevq~LLd~l~~~~p~lVeelvP~~lsl~~i~~VLQ~LL~E~VsIRDLrtILEtLad~a~~~kDp~~LtE 467 (583)
T PRK05910 388 RNLAPEAIHERFVKKLVEEFQEVLGISIEEIIPKKISENSLVFLLRALVRERVSLHLFPKILEAIAVYGSQGDSLEILAE 467 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 98699886799999999999876607888873465787899999999986798623388999999985445699999999
Q ss_pred HHHHHHHHHHHHHHC-CCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999998999865207-7884899988878999999983037778846456698899999999999999999569987998
Q gi|254780512|r 573 QVRIRMAQQICGDLA-PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIV 651 (692)
Q Consensus 573 ~VR~aL~R~I~~~~~-~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl 651 (692)
T Consensus 468 ~VR~aL~R~I~~~~~~~~g~L~VitLdp~lEq~l~~s~~~----------~~P~l~~~li~~l~~~~~~~~~~~-~~vlL 536 (583)
T PRK05910 468 KVRKYLGKQIGRSLWDQKDTLEVITIDSHVEQFIRDSYSK----------SNPDMNEKVVRQVKSLLERSGEGD-FRAIV 536 (583)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHCCC-CCEEE
T ss_conf 9999999999998458998258999688999999876651----------794189999999999999985689-98698
Q ss_pred ECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf 28335489999988644898189440178996579888609
Q gi|254780512|r 652 TLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692)
Q Consensus 652 ~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692)
T Consensus 537 ts~~iRr~lrrlie~~~p~L~VLSy~EI~~~~~I~vvGtVs 577 (583)
T PRK05910 537 TGCETRFELKKMVDPHFPDLLVLSHSELPEEIPISLLGAVS 577 (583)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEECHHHCCCCCEEEEEEEEE
T ss_conf 08303899999999877998697712069998268999972