HHsearch alignment for GI: 254780512 and conserved domain: PRK06012
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated.
Probab=100.00 E-value=0 Score=1953.57 Aligned_cols=683 Identities=42% Similarity=0.700 Sum_probs=661.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000001001345899999999999960384789999999999999999999951377045420048999999999855
Q gi|254780512|r 7 GISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSL 86 (692)
Q Consensus 7 ~~~~~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~L 86 (692)
T Consensus 5 ~~~~~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~ll~~ni~~s~lil~~~~~~~~pl~fs~FPslLL~~TlfRL~L 84 (691)
T PRK06012 5 RLPNNLKLLNARDLAVALLVLAILAMMILPLPPFLLDILLTFNIALSVLILLVALFIQRPLDFSAFPTLLLITTLLRLAL 84 (691)
T ss_pred CCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 55255542354315899999999999741797899999999999999999999986588412100549999999999998
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 48888898843777763267899987514501326999999999999999886457514666554544203760345478
Q gi|254780512|r 87 NIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAID 166 (692)
Q Consensus 87 niasTRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaID 166 (692)
T Consensus 85 nissTRlIL~~g~~g~~~AG~vI~~FG~FVvggn~vVG~viF~Il~ivqFiVITkGa~RvAEVaARFtLDamPGKQMaID 164 (691)
T PRK06012 85 NVASTRLILLEGHEGTDAAGKVIEAFGQFVVGGNYVVGIVVFLILVIINFVVITKGAGRIAEVAARFTLDAMPGKQMAID 164 (691)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 79999999976887764203899985210676845435589899987753488158417878777620046886322156
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 78764899989999999999865222201220134530105899999999988899999997399889999998999864
Q gi|254780512|r 167 ADLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVG 246 (692)
Q Consensus 167 aDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIG 246 (692)
T Consensus 165 aDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGAsKFVkGDAIAgiiI~~iNiigG~~iGv~q~gm~~~~A~~~Yt~LTIG 244 (691)
T PRK06012 165 ADLNAGLIDEEEAKKRREEVQQEADFYGAMDGASKFVKGDAIAGILITFINIIGGLIIGVVQHGMSFGEAAETYTLLTIG 244 (691)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHEEEEC
T ss_conf 38666999999999999999864213102553465524642899999999985114888862699899999874502242
Q ss_pred HHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57888515899987331026623774305899999876186489999999999861578647899999999999999886
Q gi|254780512|r 247 DGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVP 326 (692)
Q Consensus 247 DGLVsQIPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~ 326 (692)
T Consensus 245 DGLVsQIPaLliS~AaGiiVTR~~~~~~lg~~i~~Ql~~~p~al~i~a~il~~lglvPG~P~~~Fl~la~~l~~~~~~l~ 324 (691)
T PRK06012 245 DGLVAQIPALLISTAAGIIVTRVSSDGDFGEAIVGQLFANPKALYIAAGVLFLLGLVPGMPHLPFLLLAGLLGFLAYRLR 324 (691)
T ss_pred HHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 14887717999997754588757785558999999997296789999999999987589816799999999999999987
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4432222100110002356676753001002460122101-111123457552688999999999998098788324454
Q gi|254780512|r 327 YKNELQRLAKVAQIQEASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTT 405 (692)
Q Consensus 327 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrD 405 (692)
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~i~lelg~~Li~lvd~~~~g~L~~RI~~lRk~ia~elG~vlP~IrIrD 404 (691)
T PRK06012 325 KREKKEAEEAAAEAEEAAEPEEESWDDVLPVDPLGLEVGYRLIPLVDENQGGELLDRIKGIRKKIAQELGFLVPPVRIRD 404 (691)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 41012323344444445567865633425677368887064797541103672999999999999998298878169986
Q ss_pred CCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHH
Q ss_conf 37789871699974824534884178341330588876788741014766883034397884588828990705889999
Q gi|254780512|r 406 DISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVL 485 (692)
Q Consensus 406 n~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~Via 485 (692)
T Consensus 405 n~~L~p~~Y~I~I~gv~va~g~i~pd~~LAi~~~~~~~~l~G~~t~ePafGl~A~WI~~~~~~~A~~~Gytvvdp~sVia 484 (691)
T PRK06012 405 NLQLPPNEYRIKIKGVEVGEGELRPGRLLAMNPGGVDGELPGIPTKEPAFGLPAVWIDEALREQAQLLGYTVVDPATVVA 484 (691)
T ss_pred CCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEECHHHHHH
T ss_conf 78899876999989888988887788577578877656789842458899985397587568899987998976588999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999879998729999999999766648999986311599899999999999749865469999999987533579
Q gi|254780512|r 486 THLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSR 565 (692)
Q Consensus 486 tHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~k 565 (692)
T Consensus 485 THL~evlr~~a~ellg~QEvq~LLd~L~~~~p~LVeElvp~~lsl~~i~~VLq~LL~E~VsIRdl~~IlEaLad~a~~~k 564 (691)
T PRK06012 485 THLTEVIKQHAAELLGRQEVQQLLDRLAKEYPKLVEELVPKVLSLGTLQKVLQNLLKERVSIRDLRTILETLAEYAPITK 564 (691)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999999989998489999999999986748999986126758899999999998699610468999999998733579
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98999999999989998652077-88489998887899999998303777884645669889999999999999999956
Q gi|254780512|r 566 KTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDK 644 (692)
Q Consensus 566 D~~~LtE~VR~aL~R~I~~~~~~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~ 644 (692)
T Consensus 565 D~~~LtE~VR~aL~r~I~~~~~~~~g~L~vi~L~p~lE~~l~~si~-~~~g~~--l~L~P~~~~~li~~l~~~~~~~~~~ 641 (691)
T PRK06012 565 DPDELTEHVRQRLGRQIVQQYKGEDGELPVITLDPELEQLLLQSLQ-GGGGSY--LALEPGLAERLLQSLQEAVERQEMK 641 (691)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHH-HCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999852899746999978899999999986-078876--6779899999999999999999854
Q ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf 998799828335489999988644898189440178996579888609
Q gi|254780512|r 645 GIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692)
Q Consensus 645 g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692)
T Consensus 642 g~~pVLl~s~~iRr~lr~lie~~~p~l~VLS~~EI~~~~~i~~~g~I~ 689 (691)
T PRK06012 642 GEPPVLLVSPALRPYLRRLLERFLPQLPVLSYNEIPDNKRIRIVGTVG 689 (691)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCEEEEEEEC
T ss_conf 999699908778999999999868998696034349998158999961