HHsearch alignment for GI: 254780512 and conserved domain: PRK12792
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed.
Probab=100.00 E-value=0 Score=1961.25 Aligned_cols=679 Identities=60% Similarity=1.009 Sum_probs=650.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01001345899999999999960384789999999999999999999951377045420048999999999855488888
Q gi|254780512|r 13 DRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTR 92 (692)
Q Consensus 13 ~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTR 92 (692)
T Consensus 11 ~~~~r~d~~~~~~~~~i~~m~i~PlP~~llD~l~~~ni~~s~~ill~~~~~~~pl~fs~FPslLL~~TlfRL~LnissTR 90 (694)
T PRK12792 11 ERRSRRDIGFAAGIVAILAVLFLPVPAVLIDIGLAFSIALSVLILMVALWIQRPLDFSAFPTVLLIATLLRLALNIATTR 90 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 54564038799999999999861797899999999999999999999996588102110429999999999999799999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 98843777763267899987514501326999999999999999886457514666554544203760345478787648
Q gi|254780512|r 93 AILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSG 172 (692)
Q Consensus 93 lIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG 172 (692)
T Consensus 91 lIL~~g~~g~~~AG~vI~aFG~FVvgGn~vVG~viF~Il~ivqFiVITKGa~RvAEVaARFtLDamPGKQMaIDaDl~aG 170 (694)
T PRK12792 91 LILSHGQEGVDAAGHVIQGFSKFVMSGDFVIGLVVFAILITVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSAG 170 (694)
T ss_pred HHHHCCCCCCCCHHHHHHHHHCEEECCCEEEHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCC
T ss_conf 99966886765214899984013777855653378599967641588468516766655331057874120898987469
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999865222201220134530105899999999988899999997399889999998999864578885
Q gi|254780512|r 173 LIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQ 252 (692)
Q Consensus 173 ~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQ 252 (692)
T Consensus 171 ~I~~~eAr~rR~~l~~Es~fyGaMDGAsKFVkGDAIAgiiI~~INiiGGl~IGv~q~gm~~~~A~~~YtlLTIGDGLVsQ 250 (694)
T PRK12792 171 LIDDKEAQRRRRELEEESAFFGSMDGASKFVRGDAIASLIIIAVNIFGGIIIGVTRHGMPLAQAADVFTKLSVGDGLVSQ 250 (694)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCHHHHHH
T ss_conf 99989999999998865023320556113116328999999999985121666533588899999997888723129987
Q ss_pred HHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15899987331026623774305899999876186489999999999861578647899999999999999886443222
Q gi|254780512|r 253 VPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQ 332 (692)
Q Consensus 253 IPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~~~~ 332 (692)
T Consensus 251 IPaLliS~aaGiiVTR~~s~~~~~~~i~~Ql~~~p~al~iaa~~l~~lglvPG~P~~~Fl~la~~l~~~~~~l~r~~~~~ 330 (694)
T PRK12792 251 IPALIVSLAAGLLVSKGGTRGSAEQAVLGQLGAYPRALLVAALLMFVLAIVPGLPFLPFALLGGLMAFVAYAIPRRRAAE 330 (694)
T ss_pred HHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 27999987543588626885437999999986394289999999999983679816799999999999999988643101
Q ss_pred HHHHHHHCC----CCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 210011000----2356676753001002460122101-11112345755268899999999999809878832445437
Q gi|254780512|r 333 RLAKVAQIQ----EASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDI 407 (692)
Q Consensus 333 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~ 407 (692)
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~lg~~L~~~~~~-~~g~L~~rI~~lR~~la~elG~vlP~IrIrDn~ 409 (694)
T PRK12792 331 QAAEAAKVKAEEERAQAEAKDSVKESLRTAEIELCLGKQLAAQLLG-AHAELAHRVAKMRRKFAQQYGFVVPEIKLTDSL 409 (694)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 2211123344444445578653233057665566513004554041-221699999999999999829888836998568
Q ss_pred CCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHH
Q ss_conf 78987169997482453488417834133058887678874101476688303439788458882899070588999999
Q gi|254780512|r 408 SLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTH 487 (692)
Q Consensus 408 ~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatH 487 (692)
T Consensus 410 ~L~p~~Y~I~I~gv~v~~g~l~p~~lLai~~~~~~~~i~G~~t~ePafGl~A~WI~~~~~~~Ae~~Gytvvdp~tVi~TH 489 (694)
T PRK12792 410 SLPPKTYQIKIHGTVVATQELRPGELLVVVGDGPRPDVPGEEVREPAFGMKALWVPDAFAGEVRREGFEPVDNASVLLTH 489 (694)
T ss_pred CCCCCCEEEEECCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCEEECHHHHHHHH
T ss_conf 89997049875657887213465615897489876788872013556788602368888899997898898689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999987999872999999999976664899998631159989999999999974986546999999998753357998
Q gi|254780512|r 488 LSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKT 567 (692)
Q Consensus 488 l~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~ 567 (692)
T Consensus 490 L~evlr~~a~ellgrQEvq~LLd~l~~~~P~LVeElvP~~l~l~~i~~VLq~LL~E~VsIRdlrtIlEtLad~a~~~kD~ 569 (694)
T PRK12792 490 LSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYSGLQAVLKLLLAERVSIRNLHLILEAIAEIAPHARRS 569 (694)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 99999998999829999999999998764899998562568888999999999877897212899999999860136999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999998999865207788489998887899999998303777884645669889999999999999999956998
Q gi|254780512|r 568 SHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIP 647 (692)
Q Consensus 568 ~~LtE~VR~aL~R~I~~~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~ 647 (692)
T Consensus 570 ~~LtE~VR~aL~r~I~~~~~~~g~L~vi~L~p~lE~~l~~si~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~ 649 (694)
T PRK12792 570 EQIAEHVRMRIAQQICGDLSDNGVLKVLRLGNRWDLAFHQSLKRDAKGEVVEFDIDPRLVEQFGTEASEAIRERMDQGHG 649 (694)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999998528898228999688999999999863567875336799799999999999999999865999
Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf 799828335489999988644898189440178996579888609
Q gi|254780512|r 648 LTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692)
Q Consensus 648 pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692)
T Consensus 650 pVLltsp~iRr~lr~lle~~~p~l~VLS~~EI~~~~~I~~vG~Is 694 (694)
T PRK12792 650 FVLVTAPEARPYVRMIIERLFPTLPVLSHVEIARGVEIKSLGTIS 694 (694)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCEEECHHHCCCCCEEEEEEEEC
T ss_conf 699988656899999999868998696432169997268988859