HHsearch alignment for GI: 254780512 and conserved domain: TIGR01399

>TIGR01399 hrcV type III secretion protein, HrcV family; InterPro: IPR006302 Members of this family are closely homologous to the flagellar biosynthesis protein FlhA and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. ; GO: 0015031 protein transport, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=1847.26  Aligned_cols=666  Identities=35%  Similarity=0.589  Sum_probs=607.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01345899999999999960384789999999999999999999951377045420048999999999855488888988
Q gi|254780512|r   16 HLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAIL   95 (692)
Q Consensus        16 ~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL   95 (692)
T Consensus         1 ~~~d~~la~~~l~~v~MMilPLPt~~vD~LIa~Ni~isvlLLM~a~Yi~~pL~lS~FP~vLLiTTlFRLaLsISTtRlIL   80 (709)
T TIGR01399         1 ARSDLVLALLLLAIVSMMILPLPTLLVDILIAINITISVLLLMIAIYIPDPLALSAFPAVLLITTLFRLALSISTTRLIL   80 (709)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98725478889999999873110899999999999999999999860278345553268999999999888699999999


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf             43777763267899987514501326999999999999999886457514666554544203760345478787648999
Q gi|254780512|r   96 SFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIE  175 (692)
Q Consensus        96 ~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~I~  175 (692)
T Consensus        81 L~~d-----AG~Ii~~FG~FVVGGNl~VGlViFlIiTiVQFiVITKGsERVAEVsARFsLDaMPGKQMSIDaDLRAg~ID  155 (709)
T TIGR01399        81 LHAD-----AGNIIEAFGDFVVGGNLVVGLVIFLIITIVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDADLRAGVID  155 (709)
T ss_pred             HHCC-----CCHHHHHHCCCEECCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf             7402-----11075760881571402350345467788755653146630332011220278898343303772058679


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999865222201220134530105899999999988899999997399889999998999864578885158
Q gi|254780512|r  176 EEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPA  255 (692)
Q Consensus       176 ~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQIPa  255 (692)
T Consensus       156 ~~eAR~rRs~l~kESQL~GaMDGAMKFVKGDAIAGiII~~iNi~GGi~IGv~~~GM~~~eAl~~YtvLtiGDgLvsQIPa  235 (709)
T TIGR01399       156 ADEARERRSTLEKESQLYGAMDGAMKFVKGDAIAGIIIVLINILGGISIGVTQHGMSASEALHLYTVLTIGDGLVSQIPA  235 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78999998899888886267644342200233777999999999789878885387888898451477685578898899


Q ss_pred             HHHHHHHHHEEEECC--CC----CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             999873310266237--74----30589999987618648999999999986157864789999999999999988644-
Q gi|254780512|r  256 LIISLSAAFLVSRTT--SK----GSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYK-  328 (692)
Q Consensus       256 LliS~aaGiiVTRvs--s~----~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~-  328 (692)
T Consensus       236 LLIS~tAG~ivTRV~d~ge~~k~~nLG~eI~~Ql~~~p~al~~~Avlll~~a~~PGFP~~~F~~lAv~l~~~~y~~~~~k  315 (709)
T TIGR01399       236 LLISVTAGIIVTRVPDEGEAKKEENLGREIVSQLVSQPRALLLAAVLLLLFALIPGFPLLVFALLAVLLAVLGYLLSRRK  315 (709)
T ss_pred             HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99998569468764899801578788888999754175899999999999862045406999999999998888862468


Q ss_pred             --HHHHHHHH----HHHCCCCCCCC----CCCCC-----------HHHCCCCCHHHHCCCCCCCCCCCCCCHH------H
Q ss_conf             --32222100----11000235667----67530-----------0100246012210111112345755268------8
Q gi|254780512|r  329 --NELQRLAK----VAQIQEASKQN----QHSAQ-----------LNFITSGVELVLGSLVSNRLLSSQEDLF------L  381 (692)
Q Consensus       329 --~~~~~~~~----~~~~~~~~~~~----~~~~~-----------~~~~~~~i~l~lg~li~l~~~~~~~~L~------~  381 (692)
T Consensus       316 PaK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ankGrlGeqe~~~~a~Pl~L~l~p~l~~--~~~~~~L~Gqsfvd~  393 (709)
T TIGR01399       316 PAKRSKAKANTKGAQALGAEASAPGAAALIKNSDKANKGRLGEQEVFAEAVPLILRLSPDLQE--SIDKDALEGQSFVDQ  393 (709)
T ss_pred             CCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH--HHHHHHHCCCHHHHH
T ss_conf             888886666665302220112466521134443322236555310120231355760766578--887776236415789


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCE--EECC-CCCCC
Q ss_conf             99999999999809878832445437789871699974824534884178341330588876788741--0147-66883
Q gi|254780512|r  382 RVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDE--VKEP-AFGMP  458 (692)
Q Consensus       382 rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~--~~eP-~fgl~  458 (692)
T Consensus       394 ~i~~~R~~l~~d~G~plP~i~~~~~~~l~~~~~~~ll~~vP~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~  473 (709)
T TIGR01399       394 EIERMRRALFEDLGVPLPGIIVRVVESLPDNEFEILLYEVPVLRGTIPPGHVLLNEGVANPIEVAGIPFISGKQLQGESQ  473 (709)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCEEEHHHHHHCCCHHCCCCCCCCCCCCCCCC
T ss_conf             99999999999867999717886368898761889884234688874365202011334020111556331334566788


Q ss_pred             EEECCHHHHHHHHHCCCEEECHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             03439788458882899070588-----9999999999998799987299999999997666489999863115998999
Q gi|254780512|r  459 AFAIMESFSDDLRRQGFHPIDNL-----AVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGI  533 (692)
Q Consensus       459 A~WI~~~~~~~a~~~G~tvvdp~-----~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i  533 (692)
T Consensus       474 ~~Wv~~~~~~~L~~~~~~~~~~~~Wrte~~i~~~L~~~l~~~a~~FiGiQETr~ll~~mE~~ypeLvKEv-qR~lpl~ri  552 (709)
T TIGR01399       474 RVWVSEEEAEKLEKAGLDVFSKSVWRTEQVITLRLKAVLLRNAQEFIGIQETRYLLDQMEREYPELVKEV-QRVLPLQRI  552 (709)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHH-HHCCCHHHH
T ss_conf             7766678999999878888876302169999999999998534330106799999999630448078999-740790248


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEECHHHHHHHHHHHHCC
Q ss_conf             999999997498654699999999875335799899999999998999865207788-4899988878999999983037
Q gi|254780512|r  534 QAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTG-ILNILKLGNHWDMIFYQAIQRD  612 (692)
Q Consensus       534 ~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~g-~L~vi~L~p~lE~~l~~~i~~t  612 (692)
T Consensus       553 ~evLqRLv~E~vSIRn~R~I~E~Li~W~~~EKDvv~LTEYVR~aLkR~I~~rya~~~~~L~~~l~~~e~E~~iR~~iRQT  632 (709)
T TIGR01399       553 AEVLQRLVSEQVSIRNLRLILEALIEWAQKEKDVVLLTEYVRIALKRYICHRYANGGRVLSAYLIDPEIEELIREAIRQT  632 (709)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_conf             99999871279858899999999987601014500224778998999999998358964799971720578876030017


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEE
Q ss_conf             7788464566988999999999999999995699879982833548999998864489818944017899657988860
Q gi|254780512|r  613 SKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTI  691 (692)
Q Consensus       613 ~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~I  691 (692)
T Consensus       633 s~G~y--LaL~p~~~~~ll~~~~~~~~~~~~~~~~~Vllts~DiRRyvRk~ie~~f~~lpVLSyQEl~~~~~~~v~Gri  709 (709)
T TIGR01399       633 STGTY--LALDPEASEQLLDQIRQILGDLLRAKSKPVLLTSMDIRRYVRKLIESEFPDLPVLSYQELGEEIEVQVLGRI  709 (709)
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCEEEHHHHHCCCEEEECCCC
T ss_conf             89774--248989999999999998631144557847999851135678887511687331527434146331101449