HHsearch alignment for GI: 254780512 and conserved domain: TIGR01399
>TIGR01399 hrcV type III secretion protein, HrcV family; InterPro: IPR006302 Members of this family are closely homologous to the flagellar biosynthesis protein FlhA and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. ; GO: 0015031 protein transport, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=1847.26 Aligned_cols=666 Identities=35% Similarity=0.589 Sum_probs=607.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01345899999999999960384789999999999999999999951377045420048999999999855488888988
Q gi|254780512|r 16 HLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAIL 95 (692)
Q Consensus 16 ~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL 95 (692)
T Consensus 1 ~~~d~~la~~~l~~v~MMilPLPt~~vD~LIa~Ni~isvlLLM~a~Yi~~pL~lS~FP~vLLiTTlFRLaLsISTtRlIL 80 (709)
T TIGR01399 1 ARSDLVLALLLLAIVSMMILPLPTLLVDILIAINITISVLLLMIAIYIPDPLALSAFPAVLLITTLFRLALSISTTRLIL 80 (709)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98725478889999999873110899999999999999999999860278345553268999999999888699999999
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 43777763267899987514501326999999999999999886457514666554544203760345478787648999
Q gi|254780512|r 96 SFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIE 175 (692)
Q Consensus 96 ~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~I~ 175 (692)
T Consensus 81 L~~d-----AG~Ii~~FG~FVVGGNl~VGlViFlIiTiVQFiVITKGsERVAEVsARFsLDaMPGKQMSIDaDLRAg~ID 155 (709)
T TIGR01399 81 LHAD-----AGNIIEAFGDFVVGGNLVVGLVIFLIITIVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDADLRAGVID 155 (709)
T ss_pred HHCC-----CCHHHHHHCCCEECCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 7402-----11075760881571402350345467788755653146630332011220278898343303772058679
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999865222201220134530105899999999988899999997399889999998999864578885158
Q gi|254780512|r 176 EEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPA 255 (692)
Q Consensus 176 ~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQIPa 255 (692)
T Consensus 156 ~~eAR~rRs~l~kESQL~GaMDGAMKFVKGDAIAGiII~~iNi~GGi~IGv~~~GM~~~eAl~~YtvLtiGDgLvsQIPa 235 (709)
T TIGR01399 156 ADEARERRSTLEKESQLYGAMDGAMKFVKGDAIAGIIIVLINILGGISIGVTQHGMSASEALHLYTVLTIGDGLVSQIPA 235 (709)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999998899888886267644342200233777999999999789878885387888898451477685578898899
Q ss_pred HHHHHHHHHEEEECC--CC----CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 999873310266237--74----30589999987618648999999999986157864789999999999999988644-
Q gi|254780512|r 256 LIISLSAAFLVSRTT--SK----GSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYK- 328 (692)
Q Consensus 256 LliS~aaGiiVTRvs--s~----~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~- 328 (692)
T Consensus 236 LLIS~tAG~ivTRV~d~ge~~k~~nLG~eI~~Ql~~~p~al~~~Avlll~~a~~PGFP~~~F~~lAv~l~~~~y~~~~~k 315 (709)
T TIGR01399 236 LLISVTAGIIVTRVPDEGEAKKEENLGREIVSQLVSQPRALLLAAVLLLLFALIPGFPLLVFALLAVLLAVLGYLLSRRK 315 (709)
T ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99998569468764899801578788888999754175899999999999862045406999999999998888862468
Q ss_pred --HHHHHHHH----HHHCCCCCCCC----CCCCC-----------HHHCCCCCHHHHCCCCCCCCCCCCCCHH------H
Q ss_conf --32222100----11000235667----67530-----------0100246012210111112345755268------8
Q gi|254780512|r 329 --NELQRLAK----VAQIQEASKQN----QHSAQ-----------LNFITSGVELVLGSLVSNRLLSSQEDLF------L 381 (692)
Q Consensus 329 --~~~~~~~~----~~~~~~~~~~~----~~~~~-----------~~~~~~~i~l~lg~li~l~~~~~~~~L~------~ 381 (692)
T Consensus 316 PaK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ankGrlGeqe~~~~a~Pl~L~l~p~l~~--~~~~~~L~Gqsfvd~ 393 (709)
T TIGR01399 316 PAKRSKAKANTKGAQALGAEASAPGAAALIKNSDKANKGRLGEQEVFAEAVPLILRLSPDLQE--SIDKDALEGQSFVDQ 393 (709)
T ss_pred CCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH--HHHHHHHCCCHHHHH
T ss_conf 888886666665302220112466521134443322236555310120231355760766578--887776236415789
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCE--EECC-CCCCC
Q ss_conf 99999999999809878832445437789871699974824534884178341330588876788741--0147-66883
Q gi|254780512|r 382 RVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDE--VKEP-AFGMP 458 (692)
Q Consensus 382 rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~--~~eP-~fgl~ 458 (692)
T Consensus 394 ~i~~~R~~l~~d~G~plP~i~~~~~~~l~~~~~~~ll~~vP~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 473 (709)
T TIGR01399 394 EIERMRRALFEDLGVPLPGIIVRVVESLPDNEFEILLYEVPVLRGTIPPGHVLLNEGVANPIEVAGIPFISGKQLQGESQ 473 (709)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCEEEHHHHHHCCCHHCCCCCCCCCCCCCCCC
T ss_conf 99999999999867999717886368898761889884234688874365202011334020111556331334566788
Q ss_pred EEECCHHHHHHHHHCCCEEECHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 03439788458882899070588-----9999999999998799987299999999997666489999863115998999
Q gi|254780512|r 459 AFAIMESFSDDLRRQGFHPIDNL-----AVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGI 533 (692)
Q Consensus 459 A~WI~~~~~~~a~~~G~tvvdp~-----~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i 533 (692)
T Consensus 474 ~~Wv~~~~~~~L~~~~~~~~~~~~Wrte~~i~~~L~~~l~~~a~~FiGiQETr~ll~~mE~~ypeLvKEv-qR~lpl~ri 552 (709)
T TIGR01399 474 RVWVSEEEAEKLEKAGLDVFSKSVWRTEQVITLRLKAVLLRNAQEFIGIQETRYLLDQMEREYPELVKEV-QRVLPLQRI 552 (709)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHH-HHCCCHHHH
T ss_conf 7766678999999878888876302169999999999998534330106799999999630448078999-740790248
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEECHHHHHHHHHHHHCC
Q ss_conf 999999997498654699999999875335799899999999998999865207788-4899988878999999983037
Q gi|254780512|r 534 QAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTG-ILNILKLGNHWDMIFYQAIQRD 612 (692)
Q Consensus 534 ~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~g-~L~vi~L~p~lE~~l~~~i~~t 612 (692)
T Consensus 553 ~evLqRLv~E~vSIRn~R~I~E~Li~W~~~EKDvv~LTEYVR~aLkR~I~~rya~~~~~L~~~l~~~e~E~~iR~~iRQT 632 (709)
T TIGR01399 553 AEVLQRLVSEQVSIRNLRLILEALIEWAQKEKDVVLLTEYVRIALKRYICHRYANGGRVLSAYLIDPEIEELIREAIRQT 632 (709)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_conf 99999871279858899999999987601014500224778998999999998358964799971720578876030017
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEE
Q ss_conf 7788464566988999999999999999995699879982833548999998864489818944017899657988860
Q gi|254780512|r 613 SKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTI 691 (692)
Q Consensus 613 ~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~I 691 (692)
T Consensus 633 s~G~y--LaL~p~~~~~ll~~~~~~~~~~~~~~~~~Vllts~DiRRyvRk~ie~~f~~lpVLSyQEl~~~~~~~v~Gri 709 (709)
T TIGR01399 633 STGTY--LALDPEASEQLLDQIRQILGDLLRAKSKPVLLTSMDIRRYVRKLIESEFPDLPVLSYQELGEEIEVQVLGRI 709 (709)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCEEEHHHHHCCCEEEECCCC
T ss_conf 89774--248989999999999998631144557847999851135678887511687331527434146331101449