Query gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 692 No_of_seqs 160 out of 1034 Neff 5.9 Searched_HMMs 39220 Date Sun May 29 23:28:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780512.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 TIGR01398 FlhA flagellar biosy 100.0 0 0 2113.0 61.8 674 18-691 2-713 (713) 2 PRK12792 flhA flagellar biosyn 100.0 0 0 1961.2 67.8 679 13-692 11-694 (694) 3 PRK06012 flhA flagellar biosyn 100.0 0 0 1953.6 66.7 683 7-692 5-689 (691) 4 pfam00771 FHIPEP FHIPEP family 100.0 0 0 1896.1 60.4 653 28-685 1-658 (658) 5 PRK12720 secretion system appa 100.0 0 0 1869.9 63.8 660 11-692 8-670 (681) 6 TIGR01399 hrcV type III secret 100.0 0 0 1847.3 53.5 666 16-691 1-709 (709) 7 COG1298 FlhA Flagellar biosynt 100.0 0 0 1821.5 63.5 683 5-692 6-694 (696) 8 COG4789 EscV Type III secretor 100.0 0 0 1619.9 42.6 668 13-692 8-687 (689) 9 PRK05910 type III secretion sy 100.0 0 0 1586.3 59.4 573 14-692 3-577 (583) 10 PRK10527 hypothetical protein; 92.9 0.16 4.1E-06 30.8 4.1 25 296-320 15-40 (125) 11 PRK06012 flhA flagellar biosyn 92.9 0.82 2.1E-05 25.4 10.4 63 274-337 276-338 (691) 12 pfam06277 EutA Ethanolamine ut 89.3 1.7 4.4E-05 23.0 6.5 239 403-680 146-444 (473) 13 PRK10719 eutA reactivating fac 88.7 1.9 4.9E-05 22.7 6.9 58 623-680 383-441 (471) 14 TIGR03142 cytochro_ccmI cytoch 85.3 2.9 7.3E-05 21.4 6.4 29 161-189 44-72 (117) 15 COG2832 Uncharacterized protei 82.3 1.6 4.2E-05 23.2 3.4 29 292-320 8-40 (119) 16 TIGR01990 bPGM beta-phosphoglu 81.8 2.9 7.3E-05 21.4 4.5 66 491-557 53-127 (190) 17 PRK05858 hypothetical protein; 79.9 4.5 0.00011 19.9 6.1 37 228-264 51-96 (543) 18 pfam11829 DUF3349 Protein of u 75.0 6 0.00015 18.9 7.7 75 504-580 4-87 (97) 19 PRK06456 acetolactate synthase 74.5 6.2 0.00016 18.9 5.7 37 227-263 49-94 (572) 20 PRK02463 OxaA-like protein pre 73.6 3.8 9.7E-05 20.4 3.2 44 106-150 46-97 (307) 21 PRK06112 acetolactate synthase 72.1 7 0.00018 18.5 6.8 40 227-266 58-106 (581) 22 TIGR02782 TrbB_P P-type conjug 70.2 7.6 0.00019 18.2 4.8 76 570-653 2-80 (315) 23 PRK06048 acetolactate synthase 68.9 8.1 0.00021 18.0 4.9 38 227-264 51-97 (562) 24 TIGR02871 spore_ylbJ sporulati 68.7 8.2 0.00021 17.9 7.4 132 167-313 98-236 (384) 25 PRK08611 pyruvate oxidase; Pro 67.4 8.6 0.00022 17.8 4.7 38 227-264 49-95 (576) 26 PRK09107 acetolactate synthase 67.2 8.7 0.00022 17.7 5.7 38 227-264 55-101 (594) 27 pfam04282 DUF438 Family of unk 66.9 8.8 0.00022 17.7 5.2 43 509-556 15-57 (79) 28 COG2089 SpsE Sialic acid synth 66.2 9.1 0.00023 17.6 7.1 114 528-664 157-292 (347) 29 TIGR03254 oxalate_oxc oxalyl-C 64.2 9.8 0.00025 17.3 4.8 38 227-264 46-92 (554) 30 PRK06725 acetolactate synthase 64.1 9.9 0.00025 17.3 5.5 93 162-264 3-104 (570) 31 PRK11160 cysteine/glutathione 63.5 10 0.00026 17.2 6.4 43 571-616 480-526 (575) 32 CHL00099 ilvB acetohydroxyacid 63.0 10 0.00026 17.2 5.2 37 228-264 57-102 (588) 33 TIGR02451 anti_sig_ChrR anti-s 62.8 9.4 0.00024 17.5 3.4 47 483-540 23-85 (234) 34 TIGR01113 mtrE tetrahydrometha 62.8 7.3 0.00019 18.3 2.8 10 273-282 18-27 (298) 35 PRK01622 OxaA-like protein pre 61.1 11 0.00028 17.0 3.4 33 107-140 47-79 (266) 36 TIGR02124 hypE hydrogenase exp 61.1 5 0.00013 19.5 1.7 126 522-669 197-342 (345) 37 PRK07979 acetolactate synthase 58.5 12 0.00031 16.6 4.4 60 204-264 26-94 (574) 38 PRK06882 acetolactate synthase 57.6 13 0.00032 16.5 6.3 38 227-264 48-94 (574) 39 PRK11195 major facilitator fam 57.5 13 0.00032 16.5 6.3 72 256-328 316-396 (415) 40 pfam01944 DUF95 Integral membr 56.2 13 0.00034 16.4 5.9 52 245-298 98-151 (164) 41 PRK09259 putative oxalyl-CoA d 56.2 13 0.00034 16.4 6.2 37 227-263 56-101 (572) 42 PRK08266 hypothetical protein; 55.8 13 0.00034 16.3 5.1 38 227-264 46-92 (531) 43 COG3950 Predicted ATP-binding 55.7 13 0.00034 16.3 5.1 101 530-639 218-325 (440) 44 PRK07282 acetolactate synthase 54.9 14 0.00035 16.2 5.6 38 227-264 54-100 (566) 45 PRK08327 acetolactate synthase 54.7 14 0.00036 16.2 7.6 40 224-264 54-102 (568) 46 PRK10923 glnG nitrogen regulat 54.1 14 0.00036 16.1 8.7 60 257-324 43-102 (469) 47 COG4838 Uncharacterized protei 53.8 14 0.00037 16.1 3.1 32 158-189 50-81 (92) 48 TIGR02535 hyp_Hser_kinase prop 51.5 11 0.00027 17.1 2.1 18 378-395 122-139 (431) 49 COG2733 Predicted membrane pro 51.3 16 0.0004 15.8 8.2 63 513-576 178-247 (415) 50 pfam08559 Cut8 Cut8. In Schizo 50.9 16 0.00041 15.8 3.8 46 495-541 51-99 (227) 51 PRK06154 hypothetical protein; 50.7 16 0.00041 15.7 3.7 37 227-263 52-99 (556) 52 pfam04278 Tic22 Tic22-like fam 50.1 12 0.0003 16.8 2.1 157 498-663 88-257 (259) 53 TIGR02847 CyoD cytochrome o ub 49.8 16 0.00042 15.7 3.3 25 119-143 5-29 (99) 54 KOG4715 consensus 49.3 17 0.00043 15.6 8.7 89 472-564 206-295 (410) 55 PRK08979 acetolactate synthase 49.0 17 0.00043 15.6 5.0 38 227-264 48-94 (572) 56 PRK08322 acetolactate synthase 48.7 17 0.00044 15.5 8.6 36 228-263 45-89 (547) 57 COG1297 Predicted membrane pro 48.2 17 0.00044 15.5 5.4 104 213-323 15-120 (624) 58 pfam04550 Phage_holin_2 Phage 48.2 17 0.00044 15.5 4.3 42 279-324 36-77 (90) 59 pfam05529 Bap31 B-cell recepto 48.1 17 0.00044 15.5 13.8 108 26-138 15-123 (192) 60 pfam09851 DUF2078 Predicted me 48.0 17 0.00045 15.5 5.2 36 153-188 35-73 (73) 61 PRK07418 acetolactate synthase 47.5 18 0.00045 15.4 5.0 59 205-264 42-112 (615) 62 pfam06120 Phage_HK97_TLTM Tail 47.4 18 0.00046 15.4 4.0 39 485-523 143-181 (311) 63 COG3462 Predicted membrane pro 47.0 15 0.00038 16.0 2.2 21 168-188 97-117 (117) 64 PRK06466 acetolactate synthase 46.9 18 0.00046 15.3 6.1 38 227-264 48-94 (574) 65 TIGR02002 PTS-II-BC-glcB PTS s 46.3 14 0.00035 16.2 2.0 30 298-327 382-413 (518) 66 PRK07525 sulfoacetaldehyde ace 45.9 19 0.00048 15.2 5.8 38 227-264 49-95 (589) 67 TIGR01474 ubiA_proteo 4-hydrox 45.8 18 0.00047 15.3 2.6 75 253-327 41-133 (291) 68 PRK09390 fixJ response regulat 45.4 14 0.00034 16.3 1.8 20 560-579 101-120 (202) 69 PRK07710 acetolactate synthase 45.2 19 0.00049 15.2 5.1 81 173-264 15-105 (571) 70 PRK10046 dpiA two-component re 45.0 19 0.00049 15.1 3.6 67 506-574 40-118 (225) 71 COG1067 LonB Predicted ATP-dep 44.2 20 0.00051 15.1 2.7 93 562-662 306-398 (647) 72 pfam03530 SK_channel Calcium-a 43.3 20 0.00052 15.0 4.9 24 11-34 9-32 (120) 73 pfam02341 RcbX RbcX protein. T 43.2 20 0.00052 14.9 8.2 57 487-544 4-63 (108) 74 PRK07021 fliL flagellar basal 43.2 20 0.00052 14.9 3.5 13 317-329 28-40 (159) 75 pfam06570 DUF1129 Protein of u 43.0 21 0.00053 14.9 6.4 28 304-331 176-203 (206) 76 PRK07789 acetolactate synthase 42.8 21 0.00053 14.9 6.3 159 380-544 244-414 (612) 77 TIGR03457 sulphoacet_xsc sulfo 42.3 21 0.00054 14.8 4.6 38 227-264 45-91 (579) 78 PRK08199 acetolactate synthase 42.2 21 0.00054 14.8 8.5 37 228-264 47-92 (553) 79 TIGR03545 conserved hypothetic 41.5 22 0.00055 14.8 7.5 63 503-568 167-229 (554) 80 CHL00119 atpD ATP synthase CF1 40.4 22 0.00057 14.6 11.9 111 486-610 3-133 (184) 81 TIGR03024 arch_pef_cterm PEF-C 40.3 23 0.00057 14.6 2.7 24 303-327 3-26 (28) 82 pfam11491 DUF3213 Protein of u 40.0 22 0.00055 14.8 2.2 11 512-522 57-67 (90) 83 COG4877 Uncharacterized protei 39.5 23 0.00058 14.6 2.2 35 543-577 7-47 (63) 84 KOG0776 consensus 39.4 23 0.00059 14.5 3.0 19 568-586 264-283 (384) 85 PRK10643 DNA-binding transcrip 39.3 12 0.0003 16.8 0.7 103 477-581 5-119 (222) 86 PRK07586 hypothetical protein; 39.1 20 0.00051 15.0 1.9 20 526-545 335-354 (514) 87 PRK11199 tyrA bifunctional cho 38.8 24 0.0006 14.5 7.4 65 506-584 289-356 (374) 88 PRK10582 cytochrome o ubiquino 38.4 24 0.00061 14.4 3.2 25 119-143 16-40 (109) 89 pfam07185 DUF1404 Protein of u 38.4 24 0.00061 14.4 2.6 35 218-252 86-120 (167) 90 pfam00690 Cation_ATPase_N Cati 38.4 23 0.00059 14.5 2.1 17 168-185 16-32 (69) 91 TIGR02044 CueR Cu(I)-responsiv 37.8 16 0.0004 15.8 1.2 24 384-416 15-38 (127) 92 cd01678 PFL1 Pyruvate formate 37.3 25 0.00064 14.3 2.3 40 375-414 331-371 (738) 93 COG2374 Predicted extracellula 37.0 25 0.00064 14.3 2.2 25 483-507 502-526 (798) 94 PRK00972 tetrahydromethanopter 37.0 25 0.00064 14.3 3.5 18 304-321 82-99 (293) 95 TIGR02262 benz_CoA_lig benzoat 36.9 25 0.00065 14.3 4.3 113 408-535 343-514 (520) 96 KOG0023 consensus 36.8 23 0.00058 14.6 1.9 42 501-546 306-347 (360) 97 PRK06276 acetolactate synthase 36.3 26 0.00066 14.2 5.1 38 227-264 44-90 (586) 98 PRK06965 acetolactate synthase 36.3 26 0.00066 14.2 4.0 38 227-264 65-111 (587) 99 KOG0495 consensus 36.2 17 0.00042 15.6 1.1 110 472-605 238-362 (913) 100 COG4800 Predicted transcriptio 36.0 26 0.00066 14.2 8.2 104 503-612 19-124 (170) 101 PRK06531 yajC preprotein trans 35.7 26 0.00067 14.1 2.6 28 305-335 2-29 (120) 102 COG3265 GntK Gluconate kinase 35.5 27 0.00068 14.1 6.1 80 542-627 39-121 (161) 103 TIGR03282 methan_mark_13 putat 35.4 27 0.00068 14.1 2.9 16 530-545 174-189 (352) 104 TIGR02457 TreS_Cterm trehalose 35.3 27 0.00068 14.1 2.7 62 375-451 378-439 (568) 105 TIGR03006 pepcterm_polyde poly 35.1 18 0.00046 15.3 1.2 17 508-524 54-70 (274) 106 COG4214 XylH ABC-type xylose t 34.8 27 0.00069 14.0 3.4 57 111-173 14-70 (394) 107 PRK08978 acetolactate synthase 34.8 27 0.00069 14.0 5.9 36 228-263 45-89 (548) 108 TIGR03499 FlhF flagellar biosy 34.7 27 0.0007 14.0 10.1 56 527-586 130-185 (282) 109 PRK09424 pntA NAD(P) transhydr 34.5 27 0.00068 14.1 2.0 23 479-501 314-336 (510) 110 smart00337 BCL BCL (B-Cell lym 33.9 28 0.00071 13.9 7.1 77 506-583 2-87 (100) 111 PRK09546 zntB zinc transporter 33.7 28 0.00072 13.9 5.6 100 466-580 130-229 (327) 112 PRK10034 fructuronate transpor 33.6 28 0.00072 13.9 9.3 84 47-150 8-91 (447) 113 pfam08302 tRNA_lig_CPD Fungal 33.6 17 0.00043 15.6 0.8 13 622-634 212-224 (255) 114 TIGR01931 cysJ sulfite reducta 33.6 15 0.00038 16.0 0.5 49 513-571 301-352 (628) 115 pfam02901 PFL Pyruvate formate 33.2 29 0.00073 13.8 2.3 41 375-415 344-384 (645) 116 PRK10365 transcriptional regul 32.9 29 0.00074 13.8 5.4 22 263-284 51-72 (441) 117 PTZ00210 UDP-GlcNAc-dependent 32.8 22 0.00057 14.7 1.3 24 384-407 94-117 (382) 118 pfam04352 ProQ ProQ/FINO famil 32.4 30 0.00075 13.8 2.6 100 502-640 3-104 (114) 119 PRK11269 glyoxylate carboligas 32.4 30 0.00075 13.8 9.3 38 227-264 48-95 (591) 120 TIGR01051 topA_bact DNA topois 32.0 19 0.00049 15.2 0.9 21 488-508 568-588 (688) 121 TIGR00801 ncs2 uracil-xanthine 31.8 30 0.00077 13.7 4.0 71 245-325 325-398 (480) 122 pfam09552 RE_BstXI BstXI restr 31.7 22 0.00055 14.8 1.1 30 391-424 104-133 (287) 123 PRK13435 response regulator; P 31.6 11 0.00027 17.1 -0.5 66 476-543 5-72 (141) 124 pfam00262 Calreticulin Calreti 31.6 30 0.00078 13.7 3.3 50 410-467 165-214 (359) 125 COG3965 Predicted Co/Zn/Cd cat 31.4 31 0.00078 13.6 8.1 170 209-397 24-249 (314) 126 pfam01008 IF-2B Initiation fac 30.9 31 0.00079 13.6 11.7 148 505-662 28-175 (281) 127 PRK10472 low affinity gluconat 30.6 31 0.0008 13.5 9.5 86 45-150 7-92 (445) 128 PRK07064 hypothetical protein; 30.5 32 0.00081 13.5 10.2 38 227-264 47-93 (544) 129 COG1184 GCD2 Translation initi 30.4 32 0.00081 13.5 14.5 170 477-663 17-188 (301) 130 PRK08527 acetolactate synthase 30.4 32 0.00081 13.5 5.9 38 227-264 48-94 (560) 131 TIGR02797 exbB tonB-system ene 30.3 27 0.00068 14.1 1.4 35 462-496 161-197 (213) 132 TIGR02025 BchH magnesium chela 30.3 14 0.00036 16.2 -0.1 15 503-517 727-741 (1384) 133 PRK05703 flhF flagellar biosyn 29.9 32 0.00082 13.5 8.6 76 502-583 125-200 (412) 134 PRK04040 adenylate kinase; Pro 29.9 22 0.00056 14.7 0.9 117 526-655 56-173 (189) 135 TIGR00786 dctM TRAP transporte 29.8 32 0.00083 13.5 2.1 219 11-318 115-342 (421) 136 TIGR02434 CobF precorrin-6A sy 29.8 32 0.00083 13.5 2.6 10 577-586 44-53 (259) 137 pfam00681 Plectin Plectin repe 29.4 33 0.00084 13.4 3.3 32 153-184 12-43 (45) 138 pfam07680 DoxA TQO small subun 28.4 33 0.00085 13.4 1.6 30 393-422 89-123 (133) 139 pfam02447 GntP_permease GntP f 28.4 34 0.00087 13.3 9.3 84 47-150 5-88 (441) 140 pfam11630 DUF3254 Protein of u 28.3 34 0.00087 13.3 1.7 13 497-509 84-96 (97) 141 PRK10921 twin-arginine protein 28.0 35 0.00088 13.2 12.4 68 227-307 145-212 (255) 142 COG4714 Uncharacterized membra 27.8 22 0.00056 14.7 0.6 24 304-327 3-27 (303) 143 cd04889 ACT_PDH-BS-like C-term 27.7 22 0.00056 14.7 0.6 27 529-556 8-34 (56) 144 PRK11083 DNA-binding response 27.6 29 0.00074 13.8 1.2 105 475-581 6-122 (229) 145 pfam05977 DUF894 Bacterial pro 27.4 35 0.0009 13.2 10.6 30 101-133 155-184 (524) 146 PRK01636 ccrB camphor resistan 27.3 36 0.00091 13.2 6.7 40 211-251 19-58 (118) 147 PRK13460 F0F1 ATP synthase sub 27.2 35 0.00089 13.2 1.5 36 292-327 4-39 (173) 148 PRK09174 F0F1 ATP synthase sub 27.2 36 0.00091 13.1 3.3 20 567-586 132-151 (204) 149 pfam05628 Borrelia_P13 Borreli 27.1 18 0.00046 15.3 0.0 23 202-224 61-83 (165) 150 PRK10161 transcriptional regul 26.8 19 0.00047 15.3 0.1 105 475-581 5-123 (229) 151 PRK09552 mtnX 2-hydroxy-3-keto 26.7 36 0.00093 13.1 5.6 28 648-675 91-118 (219) 152 PRK06995 flhF flagellar biosyn 26.7 36 0.00093 13.1 9.0 47 533-583 118-164 (404) 153 pfam07514 TraI_2 Putative heli 26.5 37 0.00094 13.0 5.1 21 385-405 107-127 (326) 154 PRK02944 OxaA-like protein pre 26.4 37 0.00094 13.0 7.9 88 106-218 45-139 (255) 155 PRK11361 acetoacetate metaboli 26.2 37 0.00095 13.0 9.3 24 261-284 48-71 (457) 156 pfam05313 Pox_P21 Poxvirus P21 26.0 37 0.00096 13.0 7.6 74 252-334 94-170 (190) 157 TIGR01389 recQ ATP-dependent D 25.9 38 0.00096 13.0 1.9 111 543-665 454-573 (607) 158 COG1536 FliG Flagellar motor s 25.8 38 0.00096 13.0 4.7 45 500-544 214-262 (339) 159 TIGR01522 ATPase-IIA2_Ca calci 25.8 24 0.00061 14.4 0.5 143 485-653 364-525 (856) 160 TIGR00175 mito_nad_idh isocitr 25.7 37 0.00094 13.0 1.4 24 477-500 143-166 (348) 161 COG5592 Uncharacterized conser 25.7 38 0.00096 12.9 4.4 88 509-604 37-128 (171) 162 COG4171 SapC ABC-type antimicr 25.6 38 0.00097 12.9 5.8 48 209-260 101-148 (296) 163 COG3167 PilO Tfp pilus assembl 25.6 38 0.00097 12.9 3.3 35 303-337 19-54 (211) 164 PRK03612 spermidine synthase; 25.5 38 0.00097 12.9 11.0 48 265-313 130-182 (516) 165 pfam09922 DUF2154 Predicted me 25.4 38 0.00098 12.9 4.3 66 244-325 21-86 (233) 166 COG3827 Uncharacterized protei 25.4 38 0.00098 12.9 2.0 18 508-525 202-219 (231) 167 TIGR03085 conserved hypothetic 25.4 38 0.00098 12.9 3.3 16 621-636 116-131 (199) 168 PRK11056 hypothetical protein; 25.3 38 0.00098 12.9 4.4 65 40-114 12-79 (120) 169 TIGR02418 acolac_catab acetola 25.2 39 0.00098 12.9 5.6 46 263-316 43-88 (553) 170 TIGR00739 yajC preprotein tran 25.0 39 0.00099 12.9 3.1 27 310-336 5-31 (86) 171 TIGR00151 ispF 2C-methyl-D-ery 24.9 39 0.001 12.8 2.5 46 360-405 86-134 (159) 172 PRK12360 4-hydroxy-3-methylbut 24.8 39 0.001 12.8 4.6 57 458-514 75-139 (281) 173 TIGR00992 3a0901s03IAP75 chlor 24.8 39 0.001 12.8 3.6 95 503-607 213-309 (768) 174 pfam01638 HxlR HxlR-like helix 24.7 39 0.001 12.8 4.1 53 513-567 18-89 (90) 175 COG2019 AdkA Archaeal adenylat 24.3 29 0.00074 13.8 0.7 30 516-548 49-78 (189) 176 TIGR02249 integrase_gron integ 24.0 40 0.001 12.7 2.6 49 458-506 243-297 (320) 177 TIGR02812 fadR_gamma fatty aci 24.0 41 0.001 12.7 1.5 168 457-645 24-242 (275) 178 PRK09428 pssA phosphatidylseri 24.0 41 0.001 12.7 3.7 13 389-401 105-117 (444) 179 COG2966 Uncharacterized conser 23.9 41 0.001 12.7 8.2 27 168-194 98-124 (250) 180 COG0761 lytB 4-Hydroxy-3-methy 23.9 41 0.001 12.7 3.0 40 459-498 74-113 (294) 181 PTZ00134 40S ribosomal protein 23.9 40 0.001 12.8 1.3 75 577-666 41-115 (154) 182 COG0745 OmpR Response regulato 23.6 41 0.0011 12.7 1.6 103 477-582 5-120 (229) 183 pfam10143 PhosphMutase 2,3-bis 23.5 41 0.0011 12.7 1.9 15 381-395 83-97 (174) 184 TIGR03333 salvage_mtnX 2-hydro 23.5 41 0.0011 12.7 5.7 28 648-675 88-115 (214) 185 cd04909 ACT_PDH-BS C-terminal 23.4 32 0.00083 13.5 0.8 23 530-552 12-34 (69) 186 KOG1814 consensus 23.2 42 0.0011 12.6 5.4 73 452-549 91-163 (445) 187 TIGR02611 TIGR02611 conserved 23.1 42 0.0011 12.6 2.6 15 289-303 32-46 (126) 188 PRK09821 inner membrane permea 23.0 42 0.0011 12.6 9.5 89 45-153 7-95 (454) 189 cd07039 TPP_PYR_POX Pyrimidine 22.8 43 0.0011 12.6 3.5 35 549-583 113-147 (164) 190 PRK13952 mscL large-conductanc 22.7 43 0.0011 12.5 2.2 40 196-235 17-56 (143) 191 KOG3120 consensus 22.5 43 0.0011 12.5 3.9 30 530-559 56-85 (256) 192 COG0598 CorA Mg2+ and Co2+ tra 22.4 43 0.0011 12.5 6.9 91 462-561 119-210 (322) 193 KOG0233 consensus 22.1 38 0.00096 12.9 0.9 30 209-238 131-160 (196) 194 COG0239 CrcB Integral membrane 22.1 44 0.0011 12.5 1.7 39 213-251 38-76 (126) 195 KOG2714 consensus 21.8 28 0.00073 13.9 0.2 28 169-197 72-99 (465) 196 pfam02776 TPP_enzyme_N Thiamin 21.6 38 0.00098 12.9 0.8 36 549-584 115-150 (172) 197 TIGR00423 TIGR00423 conserved 21.5 30 0.00076 13.7 0.3 46 578-636 264-315 (331) 198 pfam07427 consensus 21.4 45 0.0012 12.4 2.0 23 411-433 36-58 (126) 199 KOG2716 consensus 21.3 44 0.0011 12.4 1.1 23 560-582 143-165 (230) 200 pfam01749 IBB Importin beta bi 21.3 45 0.0012 12.4 1.8 10 175-184 19-28 (97) 201 COG5212 PDE1 Low-affinity cAMP 21.1 28 0.00073 13.9 0.1 178 378-575 146-332 (356) 202 cd06868 PX_HS1BP3 The phosphoi 21.1 46 0.0012 12.3 2.1 18 503-520 54-71 (120) 203 TIGR02088 LEU3_arch isopropylm 21.0 39 0.001 12.8 0.8 21 530-550 193-215 (350) 204 PRK09468 ompR osmolarity respo 21.0 39 0.001 12.8 0.8 105 477-583 10-126 (239) 205 PRK08733 lipid A biosynthesis 20.8 47 0.0012 12.3 5.4 43 284-329 13-57 (306) 206 pfam06942 GlpM GlpM protein. T 20.7 47 0.0012 12.3 2.2 25 281-312 13-37 (107) 207 COG4769 Predicted membrane pro 20.5 47 0.0012 12.2 6.3 92 224-315 45-148 (181) 208 COG0556 UvrB Helicase subunit 20.4 47 0.0012 12.2 4.6 260 385-665 355-657 (663) 209 PHA01633 putative glycosyl tra 20.2 28 0.00071 13.9 -0.1 22 265-286 6-27 (335) 210 TIGR00631 uvrb excinuclease AB 20.2 27 0.00068 14.1 -0.2 238 385-643 356-649 (667) 211 PRK10429 melibiose:sodium symp 20.2 48 0.0012 12.2 11.4 37 500-536 435-471 (473) 212 COG2322 Predicted membrane pro 20.2 48 0.0012 12.2 4.8 17 310-326 51-67 (177) 213 TIGR01980 sufB FeS assembly pr 20.1 48 0.0012 12.2 1.9 43 460-531 131-174 (469) 214 PRK09825 idnK D-gluconate kina 20.0 48 0.0012 12.2 7.0 31 592-628 100-130 (176) No 1 >TIGR01398 FlhA flagellar biosynthesis protein FlhA; InterPro: IPR006301 These sequences describe the flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. ; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum. Probab=100.00 E-value=0 Score=2112.96 Aligned_cols=674 Identities=46% Similarity=0.765 Sum_probs=653.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 34589999999999996038478999999999999999999995137704542004899999999985548888898843 Q gi|254780512|r 18 HDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSF 97 (692) Q Consensus 18 ~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL~~ 97 (692) +|+.+++++++|+++||+|+|+|+||+|+++||++|++|||++||++||||||+|||+||++|||||||||||||+||+| T Consensus 2 ~~~~~~~~v~~I~~~~i~PlP~~lLD~lla~nIalS~lILl~~l~i~kPLdFS~FPt~LL~~TlfRL~LNvAsTR~IL~~ 81 (713) T TIGR01398 2 KDLLLAIGVVVILAVIIIPLPAFLLDILLALNIALSLLILLVTLFIQKPLDFSSFPTLLLIATLFRLSLNVASTRLILTH 81 (713) T ss_pred CEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 30024699999888875078767999999999999999999997522421123005799999998888889999897607 Q ss_pred CCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 777763267899987514501----3269999999999999998864575146665545442037603454787876489 Q gi|254780512|r 98 GHEGYGAAGGIIAGFSSLVMS----GDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGL 173 (692) Q Consensus 98 g~~g~~~AG~vI~aFG~fVvg----gn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~ 173 (692) ||+|++|||+||+|||+|||| ||||||+|||+||+||||+||||||||||||+||||||||||||||||||||||+ T Consensus 82 G~~G~~AaG~VI~aFG~FVvG~~G~G~~ViG~iVF~ILiiiNF~VITKGA~RiaEVaARFTLDamPGKQMaIDADLNAGl 161 (713) T TIGR01398 82 GHEGPNAAGKVIEAFGQFVVGSSGTGNYVIGLIVFIILIIINFIVITKGATRIAEVAARFTLDAMPGKQMAIDADLNAGL 161 (713) T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCC T ss_conf 99775401356443330100211588707875323644335251131675114678888875126885314455321789 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99899999999998652222012201345301058999999999888999999973998899999989998645788851 Q gi|254780512|r 174 IEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQV 253 (692) Q Consensus 174 I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQI 253 (692) |||+|||+||+++++|||||||||||||||||||||||+||+||||||++||++||||++++|+++||+||||||||||| T Consensus 162 Ite~EAk~RR~e~~~Ea~FyGAMDGASKFVkGDAIAGiiIt~iNIigGliiGv~~h~M~~~~Aa~~YT~LTiGDGLVaQI 241 (713) T TIGR01398 162 ITEEEAKKRREELEQEADFYGAMDGASKFVKGDAIAGIIITLINIIGGLIIGVVQHGMSLSEAASTYTILTIGDGLVAQI 241 (713) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 89899999999998633011020267652001389999999999988787656631763899998867776877899987 Q ss_pred HHHHHHHHHHHEEEECCC-CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--- Q ss_conf 589998733102662377-4305899999876186489999999999861578647899999999999999886443--- Q gi|254780512|r 254 PALIISLSAAFLVSRTTS-KGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKN--- 329 (692) Q Consensus 254 PaLliS~aaGiiVTRvss-~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~--- 329 (692) |||+||+|||+||||+|+ ++|+|+++.+||+++||+|+++|++|++||++||||+++|+.+|+++++.||++.+++ T Consensus 242 PaL~iS~AtG~~VTR~~~~~~~~~~~~~~QL~~~p~~l~~~A~~L~lla~~PGlP~~~~~~~a~~l~~~a~~~~~~~~~~ 321 (713) T TIGR01398 242 PALIISTATGIIVTRASSDEGNLGKAIVTQLTANPRVLLIVAAVLGLLALVPGLPTLPFLLLAGALAFLAWYLRRRAKEG 321 (713) T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999998766322256640124789999986221899999999999987305337999999999999999998866642 Q ss_pred --------------------HHHHHHHH---HHCCCCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHH Q ss_conf --------------------22221001---10002356676753001002460122101-1111234575526889999 Q gi|254780512|r 330 --------------------ELQRLAKV---AQIQEASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSK 385 (692) Q Consensus 330 --------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~ 385 (692) ++++..+. ++.++..+++++++......|+++|++|| |+|++|.+|+++|.+||++ T Consensus 322 ~~~~~~~~~S~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~Le~GYgLIpLvd~~qg~~L~~RI~~ 401 (713) T TIGR01398 322 KLDKLEVKKSKKFALVLSEKKQKEEAAAEAAKAQEEAEEEEEESINDILALDDLELELGYGLIPLVDESQGGDLLDRIRS 401 (713) T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEECCCHHHCCCCCCCCHHHHHHH T ss_conf 34444433110456763334554410101332024334566562221266421588870652110125568732799999 Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHH Q ss_conf 99999998098788324454377898716999748245348841783413305888767887410147668830343978 Q gi|254780512|r 386 IRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMES 465 (692) Q Consensus 386 iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~ 465 (692) +||++|+||||++|.||||||++|+||+|+|+|+|+|+++|+++||++|||+++...+.++|++|+||+||+||+||+++ T Consensus 402 iRk~~A~e~Gfv~P~iRi~Dn~~L~P~~Y~IkikG~eva~gel~pg~~LA~~~g~~~~~i~Ge~t~ePAFGl~A~WI~e~ 481 (713) T TIGR01398 402 IRKQLAQELGFVVPVIRIRDNLRLPPNEYRIKIKGVEVARGELRPGKYLAMNPGDADGEIPGEETREPAFGLPAYWIEEK 481 (713) T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEEEECCEEEEECCCCCCCCCCCEECCCCCCCCCCEECCHH T ss_conf 98999986595188213530444789961799988998733664270786468899863175001078889861213813 Q ss_pred HHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC Q ss_conf 84588828990705889999999999998799987299999999997666489999863115998999999999997498 Q gi|254780512|r 466 FSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHV 545 (692) Q Consensus 466 ~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~V 545 (692) .||+|+..|||||||+||++|||+|++|+||+|||||||+|+|||+++++||+||||++|+++|++.+|+|||+||+|+| T Consensus 482 ~~e~A~~~GYTVVDp~tVlaTHL~E~ik~na~~LL~r~ev~~LLd~l~~~~PklVee~~P~~~~~~~iq~VLq~LL~E~V 561 (713) T TIGR01398 482 NKEEAERLGYTVVDPATVLATHLSEVIKNNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLGTIQKVLQLLLRERV 561 (713) T ss_pred HHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEHHHCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 48999864985870179999999999999898851589999999860132674001138895563369999997531789 Q ss_pred CHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 65469999999987533579-9899999999998999865207-788489998887899999998303777884645669 Q gi|254780512|r 546 SIRNLPLILESIAEVAPHSR-KTSHIVEQVRIRMAQQICGDLA-PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVE 623 (692) Q Consensus 546 sIRdlr~IlEaLad~a~~~k-D~~~LtE~VR~aL~R~I~~~~~-~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~ 623 (692) |||||++||||++|+++.++ ||+.|+||||+||+||||++|. ++|.|++++|+|+||+.+.++++++..|++.++.++ T Consensus 562 SIRnl~~ILEtlad~a~~~~~~~~~L~E~VR~rL~rqI~~~~~~~~g~L~~~~L~~~~E~~l~~~l~~~~~~~~~~~~L~ 641 (713) T TIGR01398 562 SIRNLLTILETLADYAPITKTDPDLLVEHVRQRLGRQITQQYLDEDGVLKVITLDPDLEAALAEALKEDGEGELLELALE 641 (713) T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 81306789999988775306878789999999999999996448898279998583889999987405877642125778 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC----CEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEE Q ss_conf 88999999999999999995699----879982833548999998864489818944017899657988860 Q gi|254780512|r 624 PRAVEMFSENATNSIRQYIDKGI----PLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTI 691 (692) Q Consensus 624 P~~~~~l~~~i~~~~~~~~~~g~----~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~I 691 (692) |+..+++.+++++++++....|. +|||+|||.+|||+|+++|+++|+++||||+||++|++++.+|+| T Consensus 642 P~~~~~l~~~~~~~~~~~~~~g~~~~~~~vL~t~~~~R~~~~~~le~~~~~~~VLS~~Ei~~~~~~~~~G~v 713 (713) T TIGR01398 642 PALLEELLRKVRKEVEKLAQNGEAEFVPPVLLTSPRVRPYVRRILERYFPELPVLSYNEIPKNVRVETVGVV 713 (713) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC T ss_conf 778899999999999999863677131279972860248999999873587400151125789606887629 No 2 >PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed Probab=100.00 E-value=0 Score=1961.25 Aligned_cols=679 Identities=60% Similarity=1.009 Sum_probs=650.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01001345899999999999960384789999999999999999999951377045420048999999999855488888 Q gi|254780512|r 13 DRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTR 92 (692) Q Consensus 13 ~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTR 92 (692) ++.+++|+++++++++|++|||+|||+|+||+++++||++|+++||+++|+++|||||+|||+||++||||||||||||| T Consensus 11 ~~~~r~d~~~~~~~~~i~~m~i~PlP~~llD~l~~~ni~~s~~ill~~~~~~~pl~fs~FPslLL~~TlfRL~LnissTR 90 (694) T PRK12792 11 ERRSRRDIGFAAGIVAILAVLFLPVPAVLIDIGLAFSIALSVLILMVALWIQRPLDFSAFPTVLLIATLLRLALNIATTR 90 (694) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 54564038799999999999861797899999999999999999999996588102110429999999999999799999 Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 98843777763267899987514501326999999999999999886457514666554544203760345478787648 Q gi|254780512|r 93 AILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSG 172 (692) Q Consensus 93 lIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG 172 (692) +||++||+|+++|||||+|||+||||||||||+|||+||++|||+||||||||||||+|||||||||||||||||||||| T Consensus 91 lIL~~g~~g~~~AG~vI~aFG~FVvgGn~vVG~viF~Il~ivqFiVITKGa~RvAEVaARFtLDamPGKQMaIDaDl~aG 170 (694) T PRK12792 91 LILSHGQEGVDAAGHVIQGFSKFVMSGDFVIGLVVFAILITVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSAG 170 (694) T ss_pred HHHHCCCCCCCCHHHHHHHHHCEEECCCEEEHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCC T ss_conf 99966886765214899984013777855653378599967641588468516766655331057874120898987469 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99989999999999865222201220134530105899999999988899999997399889999998999864578885 Q gi|254780512|r 173 LIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQ 252 (692) Q Consensus 173 ~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQ 252 (692) +||++|||+||+++++|||||||||||||||||||||||+|++||++||++||++|||||++||+++||+|||||||||| T Consensus 171 ~I~~~eAr~rR~~l~~Es~fyGaMDGAsKFVkGDAIAgiiI~~INiiGGl~IGv~q~gm~~~~A~~~YtlLTIGDGLVsQ 250 (694) T PRK12792 171 LIDDKEAQRRRRELEEESAFFGSMDGASKFVRGDAIASLIIIAVNIFGGIIIGVTRHGMPLAQAADVFTKLSVGDGLVSQ 250 (694) T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCHHHHHH T ss_conf 99989999999998865023320556113116328999999999985121666533588899999997888723129987 Q ss_pred HHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 15899987331026623774305899999876186489999999999861578647899999999999999886443222 Q gi|254780512|r 253 VPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQ 332 (692) Q Consensus 253 IPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~~~~ 332 (692) |||||||+|||+||||+++++|+++++.+|++++||+|+++|+++++||++||||++||+.+|+++++.||+++|+++.+ T Consensus 251 IPaLliS~aaGiiVTR~~s~~~~~~~i~~Ql~~~p~al~iaa~~l~~lglvPG~P~~~Fl~la~~l~~~~~~l~r~~~~~ 330 (694) T PRK12792 251 IPALIVSLAAGLLVSKGGTRGSAEQAVLGQLGAYPRALLVAALLMFVLAIVPGLPFLPFALLGGLMAFVAYAIPRRRAAE 330 (694) T ss_pred HHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 27999987543588626885437999999986394289999999999983679816799999999999999988643101 Q ss_pred HHHHHHHCC----CCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC Q ss_conf 210011000----2356676753001002460122101-11112345755268899999999999809878832445437 Q gi|254780512|r 333 RLAKVAQIQ----EASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDI 407 (692) Q Consensus 333 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~ 407 (692) +..+.++.. +...+.+++.......+++++++|| ++++.+. ++++|.+||+++||++++|+||++|+||||||. T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~lg~~L~~~~~~-~~g~L~~rI~~lR~~la~elG~vlP~IrIrDn~ 409 (694) T PRK12792 331 QAAEAAKVKAEEERAQAEAKDSVKESLRTAEIELCLGKQLAAQLLG-AHAELAHRVAKMRRKFAQQYGFVVPEIKLTDSL 409 (694) T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC T ss_conf 2211123344444445578653233057665566513004554041-221699999999999999829888836998568 Q ss_pred CCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHH Q ss_conf 78987169997482453488417834133058887678874101476688303439788458882899070588999999 Q gi|254780512|r 408 SLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTH 487 (692) Q Consensus 408 ~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatH 487 (692) +|+||+|+|+++|+|+++|+++||++||+++++...+++|++++||+||+||+||+++++++|+..|||+|||++|++|| T Consensus 410 ~L~p~~Y~I~I~gv~v~~g~l~p~~lLai~~~~~~~~i~G~~t~ePafGl~A~WI~~~~~~~Ae~~Gytvvdp~tVi~TH 489 (694) T PRK12792 410 SLPPKTYQIKIHGTVVATQELRPGELLVVVGDGPRPDVPGEEVREPAFGMKALWVPDAFAGEVRREGFEPVDNASVLLTH 489 (694) T ss_pred CCCCCCEEEEECCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCEEECHHHHHHHH T ss_conf 89997049875657887213465615897489876788872013556788602368888899997898898689999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH Q ss_conf 99999987999872999999999976664899998631159989999999999974986546999999998753357998 Q gi|254780512|r 488 LSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKT 567 (692) Q Consensus 488 l~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~ 567 (692) +++++|+|++||+||||||+|+|+++++||+||||++|+++|++++|+||||||+|+|||||+|+|+|||+||++++||| T Consensus 490 L~evlr~~a~ellgrQEvq~LLd~l~~~~P~LVeElvP~~l~l~~i~~VLq~LL~E~VsIRdlrtIlEtLad~a~~~kD~ 569 (694) T PRK12792 490 LSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYSGLQAVLKLLLAERVSIRNLHLILEAIAEIAPHARRS 569 (694) T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH T ss_conf 99999998999829999999999998764899998562568888999999999877897212899999999860136999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999998999865207788489998887899999998303777884645669889999999999999999956998 Q gi|254780512|r 568 SHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIP 647 (692) Q Consensus 568 ~~LtE~VR~aL~R~I~~~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~ 647 (692) +.||||||++|+||||++|+++|+|++++|+|+||+.++++++++++|++..++++|+..+++.+++++.++++...|.+ T Consensus 570 ~~LtE~VR~aL~r~I~~~~~~~g~L~vi~L~p~lE~~l~~si~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~ 649 (694) T PRK12792 570 EQIAEHVRMRIAQQICGDLSDNGVLKVLRLGNRWDLAFHQSLKRDAKGEVVEFDIDPRLVEQFGTEASEAIRERMDQGHG 649 (694) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999998528898228999688999999999863567875336799799999999999999999865999 Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC Q ss_conf 799828335489999988644898189440178996579888609 Q gi|254780512|r 648 LTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692) Q Consensus 648 pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692) |||+|||++|||+|+++|+++|+++||||+||+++++++++|+|| T Consensus 650 pVLltsp~iRr~lr~lle~~~p~l~VLS~~EI~~~~~I~~vG~Is 694 (694) T PRK12792 650 FVLVTAPEARPYVRMIIERLFPTLPVLSHVEIARGVEIKSLGTIS 694 (694) T ss_pred EEEECCHHHHHHHHHHHHHHCCCCEEECHHHCCCCCEEEEEEEEC T ss_conf 699988656899999999868998696432169997268988859 No 3 >PRK06012 flhA flagellar biosynthesis protein FlhA; Validated Probab=100.00 E-value=0 Score=1953.57 Aligned_cols=683 Identities=42% Similarity=0.700 Sum_probs=661.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00000001001345899999999999960384789999999999999999999951377045420048999999999855 Q gi|254780512|r 7 GISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSL 86 (692) Q Consensus 7 ~~~~~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~L 86 (692) .+....+..+.+|+++++++++|++|||+|||+|+||+++++||++|+++||+++|+++|||||+|||+||++|||||+| T Consensus 5 ~~~~~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~ll~~ni~~s~lil~~~~~~~~pl~fs~FPslLL~~TlfRL~L 84 (691) T PRK06012 5 RLPNNLKLLNARDLAVALLVLAILAMMILPLPPFLLDILLTFNIALSVLILLVALFIQRPLDFSAFPTLLLITTLLRLAL 84 (691) T ss_pred CCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHH T ss_conf 55255542354315899999999999741797899999999999999999999986588412100549999999999998 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 48888898843777763267899987514501326999999999999999886457514666554544203760345478 Q gi|254780512|r 87 NIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAID 166 (692) Q Consensus 87 niasTRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaID 166 (692) ||||||+||++||+|+++|||||++||+||||||||||+|||+||++|||+||||||||||||+|||||||||||||||| T Consensus 85 nissTRlIL~~g~~g~~~AG~vI~~FG~FVvggn~vVG~viF~Il~ivqFiVITkGa~RvAEVaARFtLDamPGKQMaID 164 (691) T PRK06012 85 NVASTRLILLEGHEGTDAAGKVIEAFGQFVVGGNYVVGIVVFLILVIINFVVITKGAGRIAEVAARFTLDAMPGKQMAID 164 (691) T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 79999999976887764203899985210676845435589899987753488158417878777620046886322156 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 78764899989999999999865222201220134530105899999999988899999997399889999998999864 Q gi|254780512|r 167 ADLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVG 246 (692) Q Consensus 167 aDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIG 246 (692) ||||||+||++|||+||+++++|||||||||||||||||||||||+|++||++||++|||+|||||++||+++||+|||| T Consensus 165 aDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGAsKFVkGDAIAgiiI~~iNiigG~~iGv~q~gm~~~~A~~~Yt~LTIG 244 (691) T PRK06012 165 ADLNAGLIDEEEAKKRREEVQQEADFYGAMDGASKFVKGDAIAGILITFINIIGGLIIGVVQHGMSFGEAAETYTLLTIG 244 (691) T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHEEEEC T ss_conf 38666999999999999999864213102553465524642899999999985114888862699899999874502242 Q ss_pred HHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 57888515899987331026623774305899999876186489999999999861578647899999999999999886 Q gi|254780512|r 247 DGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVP 326 (692) Q Consensus 247 DGLVsQIPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~ 326 (692) |||||||||||+|+|||++|||+++++|+|+++.+|++++||+|+++|+++++||++||||++||+.+|++++++||+++ T Consensus 245 DGLVsQIPaLliS~AaGiiVTR~~~~~~lg~~i~~Ql~~~p~al~i~a~il~~lglvPG~P~~~Fl~la~~l~~~~~~l~ 324 (691) T PRK06012 245 DGLVAQIPALLISTAAGIIVTRVSSDGDFGEAIVGQLFANPKALYIAAGVLFLLGLVPGMPHLPFLLLAGLLGFLAYRLR 324 (691) T ss_pred HHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 14887717999997754588757785558999999997296789999999999987589816799999999999999987 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 4432222100110002356676753001002460122101-111123457552688999999999998098788324454 Q gi|254780512|r 327 YKNELQRLAKVAQIQEASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTT 405 (692) Q Consensus 327 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrD 405 (692) |+++.++..+.+...++..+.+.++......||+++++|| ++++++.+++++|.+||+++||++++|+||++|+||||| T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~i~lelg~~Li~lvd~~~~g~L~~RI~~lRk~ia~elG~vlP~IrIrD 404 (691) T PRK06012 325 KREKKEAEEAAAEAEEAAEPEEESWDDVLPVDPLGLEVGYRLIPLVDENQGGELLDRIKGIRKKIAQELGFLVPPVRIRD 404 (691) T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 41012323344444445567865633425677368887064797541103672999999999999998298878169986 Q ss_pred CCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHH Q ss_conf 37789871699974824534884178341330588876788741014766883034397884588828990705889999 Q gi|254780512|r 406 DISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVL 485 (692) Q Consensus 406 n~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~Via 485 (692) |.+|+||+|+|+++|+++++|+++||++||+++++...+++|++++||+||+||+||++++|++|+..|||++||++|++ T Consensus 405 n~~L~p~~Y~I~I~gv~va~g~i~pd~~LAi~~~~~~~~l~G~~t~ePafGl~A~WI~~~~~~~A~~~Gytvvdp~sVia 484 (691) T PRK06012 405 NLQLPPNEYRIKIKGVEVGEGELRPGRLLAMNPGGVDGELPGIPTKEPAFGLPAVWIDEALREQAQLLGYTVVDPATVVA 484 (691) T ss_pred CCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEECHHHHHH T ss_conf 78899876999989888988887788577578877656789842458899985397587568899987998976588999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999879998729999999999766648999986311599899999999999749865469999999987533579 Q gi|254780512|r 486 THLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSR 565 (692) Q Consensus 486 tHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~k 565 (692) ||++|++|+|++||+|+||||+|+|+++++||+||||++|+++|++++|+||||||+|+|||||+++|+|||+||++++| T Consensus 485 THL~evlr~~a~ellg~QEvq~LLd~L~~~~p~LVeElvp~~lsl~~i~~VLq~LL~E~VsIRdl~~IlEaLad~a~~~k 564 (691) T PRK06012 485 THLTEVIKQHAAELLGRQEVQQLLDRLAKEYPKLVEELVPKVLSLGTLQKVLQNLLKERVSIRDLRTILETLAEYAPITK 564 (691) T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 99999999989998489999999999986748999986126758899999999998699610468999999998733579 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 98999999999989998652077-88489998887899999998303777884645669889999999999999999956 Q gi|254780512|r 566 KTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDK 644 (692) Q Consensus 566 D~~~LtE~VR~aL~R~I~~~~~~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~ 644 (692) ||+.||||||++|+||||++|.+ +|+|+|++|+|+||+.++++++ +++|++ +++||+..+++++++++.++++..+ T Consensus 565 D~~~LtE~VR~aL~r~I~~~~~~~~g~L~vi~L~p~lE~~l~~si~-~~~g~~--l~L~P~~~~~li~~l~~~~~~~~~~ 641 (691) T PRK06012 565 DPDELTEHVRQRLGRQIVQQYKGEDGELPVITLDPELEQLLLQSLQ-GGGGSY--LALEPGLAERLLQSLQEAVERQEMK 641 (691) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHH-HCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999852899746999978899999999986-078876--6779899999999999999999854 Q ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC Q ss_conf 998799828335489999988644898189440178996579888609 Q gi|254780512|r 645 GIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692) Q Consensus 645 g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692) |.+|||+|||++|||+|+++|+++|+++||||+||+++++++++|+|+ T Consensus 642 g~~pVLl~s~~iRr~lr~lie~~~p~l~VLS~~EI~~~~~i~~~g~I~ 689 (691) T PRK06012 642 GEPPVLLVSPALRPYLRRLLERFLPQLPVLSYNEIPDNKRIRIVGTVG 689 (691) T ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCEEEEEEEC T ss_conf 999699908778999999999868998696034349998158999961 No 4 >pfam00771 FHIPEP FHIPEP family. Probab=100.00 E-value=0 Score=1896.05 Aligned_cols=653 Identities=43% Similarity=0.714 Sum_probs=628.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 99999960384789999999999999999999951377045420048999999999855488888988437777632678 Q gi|254780512|r 28 LIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGG 107 (692) Q Consensus 28 ~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL~~g~~g~~~AG~ 107 (692) +|++|||+|||+|+||+++++||++|+++||+++|+++|||||+|||+||++|||||+|||||||+||++||+ +||+ T Consensus 1 ~ii~~~i~PlP~~llD~l~~~ni~~s~~il~~~~~~~~~l~fs~FPslLL~~TlfRL~LnissTRlIL~~g~~---aAG~ 77 (658) T pfam00771 1 AILAMMILPLPPFLLDLLLAFNIALSLLILLVALYIKRPLDFSSFPSLLLITTLFRLALNVASTRLILLEGHD---AAGK 77 (658) T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCH T ss_conf 9699998069889999999999999999999999658831211054999999999999879999999966840---1438 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99987514501326999999999999999886457514666554544203760345478787648999899999999998 Q gi|254780512|r 108 IIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAKRRRKELE 187 (692) Q Consensus 108 vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~I~~~eA~~rR~~l~ 187 (692) ||++||+||+|||||||+|||+||++|||+||||||||||||+||||||||||||||||||||||+||++|||+||++++ T Consensus 78 vI~aFG~fVvggn~vVG~viF~Il~ivqF~VITkGa~RvAEVaARFtLDamPGKQMaIDaDl~aG~I~~~eA~~rR~~l~ 157 (658) T pfam00771 78 VIEAFGEFVVGGNLVVGLVVFLILVIVNFIVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGLIDEEEARRRREELE 157 (658) T ss_pred HHHHHHHEEECCCEEEHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99984120676845534589899988753388158417878777620046886322156386669999999999999988 Q ss_pred HHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE Q ss_conf 65222201220134530105899999999988899999997399889999998999864578885158999873310266 Q gi|254780512|r 188 EESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPALIISLSAAFLVS 267 (692) Q Consensus 188 ~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQIPaLliS~aaGiiVT 267 (692) +|||||||||||||||||||||||+|++||++||++|||+|||||++||+++||+|||||||||||||||||+|||++|| T Consensus 158 ~Ea~fyGaMDGAsKFVkGDAIAgiiI~~iNiigGl~iG~~q~gm~~~~A~~~Y~~LTIGDGLVsQIPaLliS~aagiiVT 237 (658) T pfam00771 158 READFYGAMDGASKFVKGDAIAGIIITLINIIGGLIIGVLQHGMSFGEAAQTYTLLTIGDGLVSQIPALLISTAAGIIVT 237 (658) T ss_pred HHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCEEEE T ss_conf 76445430320455523542899999999985002888874699899999997887512158887179999875217997 Q ss_pred ECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCC Q ss_conf 237743058999998761864899999999998615786478999999999999998864432222100110---00235 Q gi|254780512|r 268 RTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQ---IQEAS 344 (692) Q Consensus 268 Rvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~~~~~~~~~~~---~~~~~ 344 (692) |+++++|+|+++++|++++||+|+++|+++++||++||||++||+.+|+++++.||+++|+++.++..+... ...++ T Consensus 238 Rv~~~~~lg~~i~~Ql~~~p~al~iaa~il~~lglvPG~P~~~Fl~la~~l~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 317 (658) T pfam00771 238 RVSSEGNLGEEIVGQLFANPKALYIAAGVLLLLGLVPGMPTLPFLLLAALLGGLAYRLSKRKRQEAAEAEAEAAEAEAAA 317 (658) T ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 37874548899999997091799999999999986479806799999999999999998521124332211123344556 Q ss_pred CCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEE Q ss_conf 6676753001002460122101-111123457552688999999999998098788324454377898716999748245 Q gi|254780512|r 345 KQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTV 423 (692) Q Consensus 345 ~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~v 423 (692) .+.+.++......+|+++++|| ++++++.+++++|.+||+++||++++||||++|+||||||.+|+||+|+|+++|+|+ T Consensus 318 ~~~~~~~~~~~~~dpl~lelg~~Li~lvd~~~gg~L~~rI~~lRk~la~elG~vlP~IrIrDn~~L~~~~Y~I~I~gv~v 397 (658) T pfam00771 318 EPEEESWDDVLPVDPLELELGYGLIPLVDPNQGGDLLDRIKGIRRQLAQELGFVLPPIRIRDNLQLPPNEYRILLKGVEV 397 (658) T ss_pred CCCCCCHHHCCCCCCEEEEECHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCEEE T ss_conf 67877855636776089998776797743202784899999999999998399887089996788998738999998999 Q ss_pred EEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 34884178341330588876788741014766883034397884588828990705889999999999998799987299 Q gi|254780512|r 424 AISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYK 503 (692) Q Consensus 424 a~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~q 503 (692) ++|+++||++||+++++...+++|++++||+||+||+||++++|++|+..|||++||++|++||+++++|+|++||+||| T Consensus 398 a~g~l~~~~lLAi~~~~~~~~i~G~~~~eP~fGl~a~WI~~~~~~~A~~~G~tvvd~~~ViatHL~evlr~~a~ellg~q 477 (658) T pfam00771 398 ARGELRPDRLLAIDPGGVLGEIPGIPTKEPAFGLPAVWIDPDQREEAEAAGYTVVDPATVIATHLSEVLRRHAAELLGRQ 477 (658) T ss_pred EEEEECCCCEEEECCCCCCCCCCCEECCCCCCCCCEEEECHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 99887789577667987655679804026899996288676247699978998974588999999999999899972999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999766648999986311599899999999999749865469999999987533579989999999999899986 Q gi|254780512|r 504 DVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQIC 583 (692) Q Consensus 504 Evq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~ 583 (692) |||+|+|+++++||+||||++|+++|++++|+||||||+|+|||||+|+|+|||+||++++|||+.||||||++|+|||| T Consensus 478 E~q~LLd~l~~~~p~LVeElvP~~lsl~~i~~VLq~LL~E~VsIRdl~tIlEtLad~a~~~kD~~~LtE~VR~aL~r~I~ 557 (658) T pfam00771 478 EVQKLLDRLEKEYPKLVEELVPKLLPLGRIQKVLQNLLKERVSIRDLRTILEALAEWAPKTKDPDLLTEYVRQALGRQIV 557 (658) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999987758999987416679999999999999779871669999999998722579999999999999999999 Q ss_pred HHHCC-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH Q ss_conf 52077-88489998887899999998303777884645669889999999999999999956998799828335489999 Q gi|254780512|r 584 GDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRM 662 (692) Q Consensus 584 ~~~~~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~ 662 (692) ++|.+ +|+|++++|+|+||++++++++++++|++ +++||+..+++++++++.++++...|.+||++|||++||++|+ T Consensus 558 ~~~~~~~g~L~vi~L~p~lE~~l~~~i~~~~~g~~--l~L~P~~~~~li~~l~~~~~~~~~~g~~pVLl~s~~iRr~lr~ 635 (658) T pfam00771 558 QQYADEDGTLPVITLDPELEQLLRDSIRQTEGGSY--LALDPDLAERLLESVREALEKLAAQGAPPVLLTSPDIRRFLRR 635 (658) T ss_pred HHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH T ss_conf 98548997369999688999999998632678876--6779899999999999999999865999699908777999999 Q ss_pred HHHHHCCCCCEEEECCCCCCCEE Q ss_conf 98864489818944017899657 Q gi|254780512|r 663 ILERNFPSLAVLSHMEIAKGLKV 685 (692) Q Consensus 663 lle~~~p~l~VLS~~EI~~~~~i 685 (692) ++++++|+++||||+||++++++ T Consensus 636 lle~~~p~l~VLS~~EI~~~~~i 658 (658) T pfam00771 636 LLERFFPDLPVLSYNEIPPEVEI 658 (658) T ss_pred HHHHHCCCCEEEECHHCCCCCCC T ss_conf 99986899869720004898929 No 5 >PRK12720 secretion system apparatus protein SsaV; Provisional Probab=100.00 E-value=0 Score=1869.89 Aligned_cols=660 Identities=29% Similarity=0.506 Sum_probs=616.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00010013458999999999999603847899999999999999999999513770454200489999999998554888 Q gi|254780512|r 11 SNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIAT 90 (692) Q Consensus 11 ~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~Lnias 90 (692) ++..+.++|+++++++++|++|||+|||+|+||+++++||++|++|||+++|+++|||||+|||+||++||||||||||| T Consensus 8 ~~~~~~~~d~~~a~~~~~ii~mmiiPlP~~llD~~l~~ni~~s~~il~~~~~~~~pl~fs~FPslLL~~TlfRLaLnvss 87 (681) T PRK12720 8 LSMCAGRQDIVLATMLLVAVFMMILPLPTWMVDILIAINLMFSVILLMIAIYLRDPLEFSVFPSLLLITTLYRLALTIST 87 (681) T ss_pred HHHHCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 99852787544799999999998507978999999999999999999999865883121005599999999999887898 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 88988437777632678999875145013269999999999999998864575146665545442037603454787876 Q gi|254780512|r 91 TRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLS 170 (692) Q Consensus 91 TRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~ 170 (692) ||+||++|| |||||++||+||||||||||+|||+||++|||+||||||||||||+|||||||||||||||||||| T Consensus 88 TRlIL~~g~-----AG~vI~aFG~FVvgGn~vVG~vvF~Il~ivqFiVITkGa~RvAEV~ARFtLDamPGKQMaIDADL~ 162 (681) T PRK12720 88 SRLVLLQHD-----AGNIVDAFGKFVVGGNLTVGLIVFTIITIVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMR 162 (681) T ss_pred HHHHHHCCC-----CCHHHHHHHHEEECCCEEEHHHHHHHHHHHHHEEEECCCHHHHHHHHHHEECCCCCCCHHHHHHHH T ss_conf 999986477-----643999830016768455345897999776424880584067566554110568752021888987 Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 48999899999999998652222012201345301058999999999888999999973998899999989998645788 Q gi|254780512|r 171 SGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLV 250 (692) Q Consensus 171 aG~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLV 250 (692) ||+||++|||+||+++++|||||||||||||||||||||||+|++||++||++|||+|||||++||+++||+|||||||| T Consensus 163 aG~I~~~eAr~rR~~l~~Es~fyGaMDGAsKFVkGDAIAgiiI~~iNiiGGl~iG~~q~gm~~~eA~~~YtlLTIGDGLV 242 (681) T PRK12720 163 AGVIDADEARRLRQHVQKESRLLGAMDGAMKFVKGDAIAGIIVILVNIIGGIIIGVMQHDMSASEAVNTYAVLSIGDGLC 242 (681) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCHHHH T ss_conf 69999899999999998764554105562031163289999999999854418998746987999998856431122488 Q ss_pred HHHHHHHHHHHHHHEEEECCCC--CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8515899987331026623774--30589999987618648999999999986157864789999999999999988644 Q gi|254780512|r 251 SQVPALIISLSAAFLVSRTTSK--GSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYK 328 (692) Q Consensus 251 sQIPaLliS~aaGiiVTRvss~--~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~ 328 (692) |||||||+|+|||++|||++++ +|+|+++++|++++||+|+++|++|++||++||||++||+.+|+++++.+|+++|| T Consensus 243 sQIPaLliS~aagiiVTRv~~~~~~~lg~~i~~Ql~~~p~al~i~a~il~~lglvPG~P~~~F~~la~~l~~~~~~~~r~ 322 (681) T PRK12720 243 GQIPSLLISLTAGIIVTRVPGEKRQNLANELSSQIGRQPQSLILAAVVLMLFALIPGFPFITFATLAALVALPIILIRRK 322 (681) T ss_pred HHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77179999986650787047887444899999999609089999999999996268972789999999999999998744 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC Q ss_conf 32222100110002356676753001002460122101111123457552688999999999998098788324454377 Q gi|254780512|r 329 NELQRLAKVAQIQEASKQNQHSAQLNFITSGVELVLGSLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDIS 408 (692) Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~lg~li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~ 408 (692) ++....++.+.....+. .++.........|+.+++++. .++++|.+||+++||++++|+||++|+||||||.+ T Consensus 323 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~l~l~~~------l~~~~L~~rI~~iRr~la~elG~vlP~IrIrDn~~ 395 (681) T PRK12720 323 KRRVSADGVEAGGSEEG-APEKDSMVPGACPLILRLSPT------LHSADLIRDIDALRWFLFEDLGVPLPEVNIEVLPE 395 (681) T ss_pred HHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEECCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 42013445445543335-764222476644079985555------56625899999999999997498867359985688 Q ss_pred CCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHH Q ss_conf 89871699974824534884178341330588876788741014766883034397884588828990705889999999 Q gi|254780512|r 409 LPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHL 488 (692) Q Consensus 409 L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl 488 (692) |+||+|+|+++|+++++|+++||++||+++++ +++|++++||+||+||+||+++++++|+..|||+|||++|++||+ T Consensus 396 L~p~~Y~I~I~gv~V~~g~l~p~~lLai~~~~---~l~g~~~~ePafgl~a~WI~~~~~~~Ae~~GytvVdp~tViaTHL 472 (681) T PRK12720 396 PTEKTLTVLLYQEPVLSLSLPPQAYLLIGADA---SVVGDSQTLPNGMGQICWLTKDMAHQAQGFGLDVFAGSQRISALL 472 (681) T ss_pred CCCCEEEEEECCEEEEEEEECCCEEEEECCCC---CCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCEEECHHHHHHHHH T ss_conf 99987999984199888887688288757877---778865557888986489673208799978998987088999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 99999879998729999999999766648999986311599899999999999749865469999999987533579989 Q gi|254780512|r 489 SEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTS 568 (692) Q Consensus 489 ~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~ 568 (692) +|++|+|++||+|+||||+|+|+++++||+||||+ |+++|++++|+||||||+|+|||||+++|+|||+||++++|||+ T Consensus 473 ~evir~~a~eLLgrqEvq~LLD~L~~~~P~LVeEl-p~~l~l~~i~~VLq~LL~E~VsIRdl~tIlEtLad~a~~~kd~~ 551 (681) T PRK12720 473 KCVLLRYMGEFIGVQETRYLMDAMEKRYGELVKEL-QRQLPIGKIAETLQRLVEERVSIRDLRLIFGTLIDWAPREKDVL 551 (681) T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHH T ss_conf 99999859998199999999999986678899756-16689899999999998758733228899999998722459999 Q ss_pred HHHHHHHHHHHHHHHHHHCC-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999989998652077-88489998887899999998303777884645669889999999999999999956998 Q gi|254780512|r 569 HIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIP 647 (692) Q Consensus 569 ~LtE~VR~aL~R~I~~~~~~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~ 647 (692) .||||||++|+||||++|.+ +++|+|++|+|+||++++++++++++|.+ ++++|+..+++++++++.+. ++.+ T Consensus 552 ~LtE~VR~aL~r~I~~~~~~~~~~L~VitL~p~lE~~l~~si~~~~~g~~--l~L~p~~~~~l~~~v~~~~~----~~~~ 625 (681) T PRK12720 552 MLTEYVRIALRRHILRRLNPEGKWIPVLRIGEGIENLVRESIRQTAMGTY--SALSSRHKTQILQLIEQALA----ESQK 625 (681) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHH----CCCC T ss_conf 99999999999999998558997369999688999999999751368876--68898999999999999997----0598 Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC Q ss_conf 799828335489999988644898189440178996579888609 Q gi|254780512|r 648 LTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692) Q Consensus 648 pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692) ||++|||++|||+|+++++++|+++||||+|||++++++++|+|+ T Consensus 626 ~VLlvs~~iRr~lr~lle~~~p~l~VLSy~EI~~~~~I~vvG~I~ 670 (681) T PRK12720 626 LVLVTSVDVRRFLRKITERTLFDVPVLSWQELGEESLIQVVGSID 670 (681) T ss_pred EEEECCHHHHHHHHHHHHHHCCCCEEECHHHCCCCCEEEEEEEEE T ss_conf 699918656799999999768998697132159998268999999 No 6 >TIGR01399 hrcV type III secretion protein, HrcV family; InterPro: IPR006302 Members of this family are closely homologous to the flagellar biosynthesis protein FlhA and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. ; GO: 0015031 protein transport, 0016021 integral to membrane. Probab=100.00 E-value=0 Score=1847.26 Aligned_cols=666 Identities=35% Similarity=0.589 Sum_probs=607.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01345899999999999960384789999999999999999999951377045420048999999999855488888988 Q gi|254780512|r 16 HLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAIL 95 (692) Q Consensus 16 ~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL 95 (692) .++|+++|++++++|+|||+||||+++|+||++||++|+++||+|+|+++||+||+|||+||+||||||||||||||+|| T Consensus 1 ~~~d~~la~~~l~~v~MMilPLPt~~vD~LIa~Ni~isvlLLM~a~Yi~~pL~lS~FP~vLLiTTlFRLaLsISTtRlIL 80 (709) T TIGR01399 1 ARSDLVLALLLLAIVSMMILPLPTLLVDILIAINITISVLLLMIAIYIPDPLALSAFPAVLLITTLFRLALSISTTRLIL 80 (709) T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98725478889999999873110899999999999999999999860278345553268999999999888699999999 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC Q ss_conf 43777763267899987514501326999999999999999886457514666554544203760345478787648999 Q gi|254780512|r 96 SFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIE 175 (692) Q Consensus 96 ~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~I~ 175 (692) +|++ |||||+|||+||||||++||+|||+|+|||||||||||||||||||||||||||||||||||||||||+|| T Consensus 81 L~~d-----AG~Ii~~FG~FVVGGNl~VGlViFlIiTiVQFiVITKGsERVAEVsARFsLDaMPGKQMSIDaDLRAg~ID 155 (709) T TIGR01399 81 LHAD-----AGNIIEAFGDFVVGGNLVVGLVIFLIITIVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDADLRAGVID 155 (709) T ss_pred HHCC-----CCHHHHHHCCCEECCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCCC T ss_conf 7402-----11075760881571402350345467788755653146630332011220278898343303772058679 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999865222201220134530105899999999988899999997399889999998999864578885158 Q gi|254780512|r 176 EEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPA 255 (692) Q Consensus 176 ~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQIPa 255 (692) .+|||+||+.+|||||||||||||||||||||||||||++||++||+.|||+||||+++||+|+||+||||||||||||| T Consensus 156 ~~eAR~rRs~l~kESQL~GaMDGAMKFVKGDAIAGiII~~iNi~GGi~IGv~~~GM~~~eAl~~YtvLtiGDgLvsQIPa 235 (709) T TIGR01399 156 ADEARERRSTLEKESQLYGAMDGAMKFVKGDAIAGIIIVLINILGGISIGVTQHGMSASEALHLYTVLTIGDGLVSQIPA 235 (709) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78999998899888886267644342200233777999999999789878885387888898451477685578898899 Q ss_pred HHHHHHHHHEEEECC--CC----CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH- Q ss_conf 999873310266237--74----30589999987618648999999999986157864789999999999999988644- Q gi|254780512|r 256 LIISLSAAFLVSRTT--SK----GSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYK- 328 (692) Q Consensus 256 LliS~aaGiiVTRvs--s~----~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~- 328 (692) ||||++||+|||||+ ++ .|||.||++|++++||||.++|++|++||++||||+++|+.+|++|++++|.+.+| T Consensus 236 LLIS~tAG~ivTRV~d~ge~~k~~nLG~eI~~Ql~~~p~al~~~Avlll~~a~~PGFP~~~F~~lAv~l~~~~y~~~~~k 315 (709) T TIGR01399 236 LLISVTAGIIVTRVPDEGEAKKEENLGREIVSQLVSQPRALLLAAVLLLLFALIPGFPLLVFALLAVLLAVLGYLLSRRK 315 (709) T ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99998569468764899801578788888999754175899999999999862045406999999999998888862468 Q ss_pred --HHHHHHHH----HHHCCCCCCCC----CCCCC-----------HHHCCCCCHHHHCCCCCCCCCCCCCCHH------H Q ss_conf --32222100----11000235667----67530-----------0100246012210111112345755268------8 Q gi|254780512|r 329 --NELQRLAK----VAQIQEASKQN----QHSAQ-----------LNFITSGVELVLGSLVSNRLLSSQEDLF------L 381 (692) Q Consensus 329 --~~~~~~~~----~~~~~~~~~~~----~~~~~-----------~~~~~~~i~l~lg~li~l~~~~~~~~L~------~ 381 (692) ++...... .+....+..+. ..+.+ ......|+-|.+.+.+.. ..+...|. + T Consensus 316 PaK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ankGrlGeqe~~~~a~Pl~L~l~p~l~~--~~~~~~L~Gqsfvd~ 393 (709) T TIGR01399 316 PAKRSKAKANTKGAQALGAEASAPGAAALIKNSDKANKGRLGEQEVFAEAVPLILRLSPDLQE--SIDKDALEGQSFVDQ 393 (709) T ss_pred CCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH--HHHHHHHCCCHHHHH T ss_conf 888886666665302220112466521134443322236555310120231355760766578--887776236415789 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCE--EECC-CCCCC Q ss_conf 99999999999809878832445437789871699974824534884178341330588876788741--0147-66883 Q gi|254780512|r 382 RVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDE--VKEP-AFGMP 458 (692) Q Consensus 382 rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~--~~eP-~fgl~ 458 (692) .|..+|+++++|+|+++|+|+++++..+++++|+|.+++||+.++++++|+++.-+.........+.+ +..+ .-..+ T Consensus 394 ~i~~~R~~l~~d~G~plP~i~~~~~~~l~~~~~~~ll~~vP~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 473 (709) T TIGR01399 394 EIERMRRALFEDLGVPLPGIIVRVVESLPDNEFEILLYEVPVLRGTIPPGHVLLNEGVANPIEVAGIPFISGKQLQGESQ 473 (709) T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCEEEHHHHHHCCCHHCCCCCCCCCCCCCCCC T ss_conf 99999999999867999717886368898761889884234688874365202011334020111556331334566788 Q ss_pred EEECCHHHHHHHHHCCCEEECHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 03439788458882899070588-----9999999999998799987299999999997666489999863115998999 Q gi|254780512|r 459 AFAIMESFSDDLRRQGFHPIDNL-----AVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGI 533 (692) Q Consensus 459 A~WI~~~~~~~a~~~G~tvvdp~-----~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i 533 (692) .+|+++++.+.++..|+.++... ++|+.||+.++.+|+.||+|.||||+|||+||++||+||||+ +|++|++++ T Consensus 474 ~~Wv~~~~~~~L~~~~~~~~~~~~Wrte~~i~~~L~~~l~~~a~~FiGiQETr~ll~~mE~~ypeLvKEv-qR~lpl~ri 552 (709) T TIGR01399 474 RVWVSEEEAEKLEKAGLDVFSKSVWRTEQVITLRLKAVLLRNAQEFIGIQETRYLLDQMEREYPELVKEV-QRVLPLQRI 552 (709) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHH-HHCCCHHHH T ss_conf 7766678999999878888876302169999999999998534330106799999999630448078999-740790248 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEECHHHHHHHHHHHHCC Q ss_conf 999999997498654699999999875335799899999999998999865207788-4899988878999999983037 Q gi|254780512|r 534 QAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTG-ILNILKLGNHWDMIFYQAIQRD 612 (692) Q Consensus 534 ~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~g-~L~vi~L~p~lE~~l~~~i~~t 612 (692) ++|||||++|+|||||+|+|+|||++||++|||...||||||.+|+|||||||++.+ .|+||.+++|.|+.+|+++||| T Consensus 553 ~evLqRLv~E~vSIRn~R~I~E~Li~W~~~EKDvv~LTEYVR~aLkR~I~~rya~~~~~L~~~l~~~e~E~~iR~~iRQT 632 (709) T TIGR01399 553 AEVLQRLVSEQVSIRNLRLILEALIEWAQKEKDVVLLTEYVRIALKRYICHRYANGGRVLSAYLIDPEIEELIREAIRQT 632 (709) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC T ss_conf 99999871279858899999999987601014500224778998999999998358964799971720578876030017 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEE Q ss_conf 7788464566988999999999999999995699879982833548999998864489818944017899657988860 Q gi|254780512|r 613 SKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTI 691 (692) Q Consensus 613 ~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~I 691 (692) +.|+| ++|||+..++++++++..+.+..+...+||||||.|+|||+|||+|.+||++||||||||.++++|||+|+| T Consensus 633 s~G~y--LaL~p~~~~~ll~~~~~~~~~~~~~~~~~Vllts~DiRRyvRk~ie~~f~~lpVLSyQEl~~~~~~~v~Gri 709 (709) T TIGR01399 633 STGTY--LALDPEASEQLLDQIRQILGDLLRAKSKPVLLTSMDIRRYVRKLIESEFPDLPVLSYQELGEEIEVQVLGRI 709 (709) T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCEEEHHHHHCCCEEEECCCC T ss_conf 89774--248989999999999998631144557847999851135678887511687331527434146331101449 No 7 >COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion] Probab=100.00 E-value=0 Score=1821.48 Aligned_cols=683 Identities=45% Similarity=0.743 Sum_probs=649.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 52000000010013458999999999999603847899999999999999999999513770454200489999999998 Q gi|254780512|r 5 LIGISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRL 84 (692) Q Consensus 5 ~~~~~~~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL 84 (692) ....+...+-.+.+|+.+++++++|++|||+|||+|+||+++++||++|++|||+++|+++|+|||+|||+||++||||| T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~iv~Il~~~ilPlP~~lLD~~l~~nialSvlIll~~~~i~~pldfs~FPTlLL~~TL~RL 85 (696) T COG1298 6 KLRFPGNLDGLQGKDLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVAMFIQRPLDFSSFPTLLLITTLLRL 85 (696) T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH T ss_conf 32043312554432023379999999998707978999999999999999999999981883312226689999999998 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHH Q ss_conf 55488888988437777632678999875145013269999999999999998864575146665545442037603454 Q gi|254780512|r 85 SLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMA 164 (692) Q Consensus 85 ~LniasTRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMa 164 (692) +|||||||+||++||+ +||+||++||+||+||||+||+|||+||++|||+||||||||||||+|||||||||||||| T Consensus 86 ~LNvASTR~IL~~G~~---aaG~vI~aFG~fvvgGn~viG~iVFlILiivnFiVITKGA~RIAEV~ARFtLDAmPGKQMa 162 (696) T COG1298 86 GLNVASTRVILSHGHE---AAGKVIEAFGNFVVGGNFVIGLIVFLILIIVNFIVITKGAERIAEVAARFTLDAMPGKQMA 162 (696) T ss_pred HHHHHHHHHHHHCCCC---CCCHHHHHHCCEEECCCEEHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHEECCCCCCCHH T ss_conf 7748878889856864---5528999740215648431699999999886406982683176666553100358764200 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 78787648999899999999998652222012201345301058999999999888999999973998899999989998 Q gi|254780512|r 165 IDADLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLS 244 (692) Q Consensus 165 IDaDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LT 244 (692) ||||||||+|||+|||+||+++++||||||||||||||||||||||++|++||++||++||++||||++++|+++||+|| T Consensus 163 IDADLnAGlI~e~eAk~RR~~l~~EadFyGAMDGASKFVkGDAIagiiI~~INIigGl~IG~~q~~m~~~~Aa~~yt~LT 242 (696) T COG1298 163 IDADLNAGLITEEEAKKRRSELEQEADFYGAMDGASKFVKGDAIAGIIILAINIIGGLLIGVLQHGMSFGEAAETYTLLT 242 (696) T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHEEEEE T ss_conf 34365348877699999999998752342303674202364489999999999986751101015777788875658987 Q ss_pred HHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 64578885158999873310266237743058999998761864899999999998615786478999999999999998 Q gi|254780512|r 245 VGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFY 324 (692) Q Consensus 245 IGDGLVsQIPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~ 324 (692) ||||||||||||++|+|||++|||+++++|+|.++.+|++++|++++++|++++++|++||||++||+.+|++++++||+ T Consensus 243 IGDGLVsQIPALliStAagiiVTR~~~~~s~gq~l~~ql~~~p~~l~i~a~~l~~lg~iPG~P~~~f~~la~~l~~~~~~ 322 (696) T COG1298 243 IGDGLVSQIPALLISTAAGIIVTRVSTDESLGQQLFTQLFANPKVLLIAAGVLFLLGLIPGMPHLPFLLLAGLLAFLAYL 322 (696) T ss_pred ECCHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 74217877479999865644888436752368999999970951799999999999737898336999999999999998 Q ss_pred HHHHHHHHHHHH--HHHCC--CCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 864432222100--11000--2356676753001002460122101-111123457552688999999999998098788 Q gi|254780512|r 325 VPYKNELQRLAK--VAQIQ--EASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVP 399 (692) Q Consensus 325 ~~r~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP 399 (692) ++++++.++.+. ..+.. +...+++.++......+++++++|| +++++|.++|++|.+||+++||++++||||++| T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~v~~~~~iele~Gy~lipl~d~~qggeLl~RI~~iRk~~a~elG~v~P 402 (696) T COG1298 323 LSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELELGYGLIPLVDEQQGGELLDRIRGIRKKIAQELGFVVP 402 (696) T ss_pred HHHCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 64001002322000123322100002543301145565220011432453125123551999999999999996596676 Q ss_pred CEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEEC Q ss_conf 32445437789871699974824534884178341330588876788741014766883034397884588828990705 Q gi|254780512|r 400 EIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPID 479 (692) Q Consensus 400 ~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvd 479 (692) .||||||.+|+||+|+|+++|+++++|+++||++||++++...+.+||++|+||+||+||+||+++.||+|+..||||+| T Consensus 403 ~IrIrDN~~L~p~~Y~ikikG~eVa~gel~~g~~Lai~~g~~~~~i~G~~t~ePaFGl~a~WI~~~~ke~A~~~GYtVvd 482 (696) T COG1298 403 VIRIRDNLRLKPNSYRIKIKGVEVASGELRPGKLLAINPGGVTGEIPGEETKDPAFGLPAYWIEEDQKEEAQILGYTVVD 482 (696) T ss_pred EEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEC T ss_conf 27984255679877079995389750322578278764877678888842467778996032171145689865975614 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 88999999999999879998729999999999766648999986311599899999999999749865469999999987 Q gi|254780512|r 480 NLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAE 559 (692) Q Consensus 480 p~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad 559 (692) |++|++||++|++|+|++|++||||+|+|+|+++++||+||||++|+++|++.+|+|||+||+|+|||||++||+||++| T Consensus 483 ~~sVi~THl~evir~~a~eLl~rqevq~Lld~l~~~~p~lvEei~p~~is~s~iqkVLq~LL~E~VsIRdl~tIlEtlad 562 (696) T COG1298 483 PSSVIATHLSEVIRNHAHELLGRQEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQKVLQNLLKERVSIRDLPTILETLAD 562 (696) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 14777986899999758988679999999998777717889986647667899999999998658753108999999987 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 5335799899999999998999865207-788489998887899999998303777884645669889999999999999 Q gi|254780512|r 560 VAPHSRKTSHIVEQVRIRMAQQICGDLA-PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSI 638 (692) Q Consensus 560 ~a~~~kD~~~LtE~VR~aL~R~I~~~~~-~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~ 638 (692) +++++||++.|||+||++|+||||++|. ++|+|+|++|+|+||+.+.++++++..+. .+.++|+..+++++++++.+ T Consensus 563 ~a~~~kd~~~L~e~VR~~L~r~I~~~~~~~~~~L~VitL~~~~E~~l~~s~~~~~~~~--~~~i~p~~~~~l~~~v~~~~ 640 (696) T COG1298 563 YAPITKDPDELTEKVRQALGRQITQQLLDENGELEVITLDPSLEQLLLNSLQKGGELD--ELPLDPDLLEKLIRQVKEEL 640 (696) T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHH T ss_conf 5546899899999999999999999863769806999958279999999885057655--55678678999999999999 Q ss_pred HHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC Q ss_conf 999956998799828335489999988644898189440178996579888609 Q gi|254780512|r 639 RQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692) Q Consensus 639 ~~~~~~g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692) ++....|.+|||+|||++|+++|+++++++|+++||||+|+|++++++.+|+|+ T Consensus 641 ~~~~~~G~~~VLl~s~~~R~~~~~~~~r~~p~l~VLS~~Ei~~~~~i~~~g~V~ 694 (696) T COG1298 641 ERVEQKGFPPVLLVSPELRPYLRRILERYFPDLVVLSHNELPDNIEIKILGTVS 694 (696) T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEHHHCCCCCEEEEEEEEC T ss_conf 999856998599957231899999998737997896442248997479998624 No 8 >COG4789 EscV Type III secretory pathway, component EscV [Intracellular trafficking and secretion] Probab=100.00 E-value=0 Score=1619.91 Aligned_cols=668 Identities=35% Similarity=0.592 Sum_probs=607.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01001345899999999999960384789999999999999999999951377045420048999999999855488888 Q gi|254780512|r 13 DRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTR 92 (692) Q Consensus 13 ~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTR 92 (692) ....++|+++++.++++++|||+||||+++|++|++|+++|+++||+++|+++||+||+|||+||+|||||||||||||| T Consensus 8 ~~~~~~dl~la~lll~~V~MmvlPLPt~lvD~LI~iNi~lsvlLlMvsiYi~~pL~lS~FPslLLiTTLfRLaLsISTtR 87 (689) T COG4789 8 RIRSRPDLILALLLLMAVAMMILPLPTVLVDILIAINLTLSVLLLMVSIYIPSPLSLSVFPSLLLITTLFRLALSISTTR 87 (689) T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 14567206999999999999873884999999999989999999999875388302200538999999999997665767 Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 98843777763267899987514501326999999999999999886457514666554544203760345478787648 Q gi|254780512|r 93 AILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSG 172 (692) Q Consensus 93 lIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG 172 (692) +||++++ ||+||++||+||||||+|||+|||+|+|+|||+||||||||||||+|||||||||||||||||||||| T Consensus 88 lILL~ad-----AG~II~sFG~FVVGGNlvVG~VIFlIITiVQFiVItKGsERVAEVaARFsLD~MPGKQMSIDaDlRAG 162 (689) T COG4789 88 LILLEAD-----AGEIIYSFGDFVVGGNLVVGFVIFLIITIVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLRAG 162 (689) T ss_pred HHHHHCC-----CCHHHHHHCCEEECCCEEEEEEEEEHHHHHEEEEEECCHHHHHHHHHHEECCCCCCCCCCCCCHHHCC T ss_conf 8887523-----25188872775675724898662133200123687056178867765210267987543203053348 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99989999999999865222201220134530105899999999988899999997399889999998999864578885 Q gi|254780512|r 173 LIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQ 252 (692) Q Consensus 173 ~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQ 252 (692) .||.+|||+||+.+|||||||||||||||||||||||||+|++||++||+.||++|||||++||+|+||+|||||||||| T Consensus 163 ~IDa~eAr~rRa~lekESqlyGsMDGAMKFVKGDaIAGiIIilVNiiGGi~IGv~q~gM~~~~Al~~YtvLsIGDglvsQ 242 (689) T COG4789 163 VIDADEARERRAVLEKESQLYGSMDGAMKFVKGDAIAGIIIILVNIIGGISIGVTQHGMSFSEALHLYTVLTIGDGLVSQ 242 (689) T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEHHCCEEEEEEECCCCHHHHHHHEEEEEECCCHHHH T ss_conf 86878889999999988887403420023204650023678988010676876444688889986454677874006766 Q ss_pred HHHHHHHHHHHHEEEECCCC--CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 15899987331026623774--3058999998761864899999999998615786478999999999999998864432 Q gi|254780512|r 253 VPALIISLSAAFLVSRTTSK--GSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNE 330 (692) Q Consensus 253 IPaLliS~aaGiiVTRvss~--~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~~ 330 (692) |||||||++||++||||+++ .|+|.+|.+|+.++||+++++|+++.+||++||||.+.|+.+|+.+++.+|..+||+. T Consensus 243 IPaLLIsitAGiiVTRV~g~~~~~Lg~eI~~Ql~~~pral~vaa~lll~~gliPGFP~~~Fl~LA~~~~~~~~~~~rkk~ 322 (689) T COG4789 243 IPALLISITAGIIVTRVSGDESKNLGTEIVSQLVANPRALLVAAALLLLFGLIPGFPLLVFLFLAVLLAAIGFLLRRKKS 322 (689) T ss_pred HHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 27999987624699963862566678999999863861789999999998725897289999999999878887321120 Q ss_pred HHHHHHHHHCCCC---CCCCCCCC--CHH--HCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 2221001100023---56676753--001--0024601221011111234575526889999999999980987883244 Q gi|254780512|r 331 LQRLAKVAQIQEA---SKQNQHSA--QLN--FITSGVELVLGSLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKV 403 (692) Q Consensus 331 ~~~~~~~~~~~~~---~~~~~~~~--~~~--~~~~~i~l~lg~li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrI 403 (692) ....+........ +.+...+. ..+ ....|+-+.++.... ..-+.-+|.+.+.++|+++++|+|+++|+|++ T Consensus 323 ~~~~~~~~~~~~~~~g~~~g~~~~~~~q~~~~~tvPlil~l~~~l~--~~l~~~~l~~~i~r~R~~lf~d~Gip~P~I~i 400 (689) T COG4789 323 VGTKEGGDLGAITLSGSADGAASLGAEQDVSAGTVPLILRLGSDLA--KALESIDLDQEIDRMRWALFEDLGIPLPGIHI 400 (689) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH--HHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 2676776665444677767776655545566655557999175677--54102207789999999999982998898055 Q ss_pred EEC-CCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCE-EECCHHHHHHHHHCCCEEECHH Q ss_conf 543-77898716999748245348841783413305888767887410147668830-3439788458882899070588 Q gi|254780512|r 404 TTD-ISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPA-FAIMESFSDDLRRQGFHPIDNL 481 (692) Q Consensus 404 rDn-~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A-~WI~~~~~~~a~~~G~tvvdp~ 481 (692) |.| ..+++++|.+.++++|+.+++++||++|..+..+.. ...+++..- --|.++ .|++++++++++..|++++.+. T Consensus 401 r~~~e~l~~~~~~v~l~evpv~~~~i~~~~~l~~~~~~~~-~~~~i~~~~-~~~~~~~~wv~~~~~~~l~~~g~~~~~~~ 478 (689) T COG4789 401 RVDPEGLEDNDYEVLLNEVPVEQGKIPPDHVLLVEGSDEL-VSTGIPYPT-NPGMEQYYWVTKSHAQKLEKLGITYYAPL 478 (689) T ss_pred ECCCCCCCCCCEEEEEECCEEEEEEECCCEEEEECCHHHH-HHCCCCCCC-CCCCCCCEEECHHHHHHHHHCCCCEECHH T ss_conf 4177767887489997111321014068625663235667-633686778-99998515655878999986498155478 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999999987999872999999999976664899998631159989999999999974986546999999998753 Q gi|254780512|r 482 AVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVA 561 (692) Q Consensus 482 ~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a 561 (692) .+++.||+.+++||++||+|.||||+|+|.++++||+||||+ +|++|++++++|||||++|+|||||||+|+|+|++|+ T Consensus 479 ~~i~~~L~~~l~r~a~efiGiQETryll~~mE~~Y~dLvKEv-qR~ip~qriaeiLqRLv~E~IsIRnmR~IlEaL~~W~ 557 (689) T COG4789 479 DVITLHLSHVLRRNANEFIGIQETRYLLDQMERKYSDLVKEV-QRQIPLQRIAEILQRLVEERISIRNMRLILEALVEWA 557 (689) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC T ss_conf 999999999999868875136889999999863368999999-9857787899999999856887557999999997635 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 35799899999999998999865207788-48999888789999999830377788464566988999999999999999 Q gi|254780512|r 562 PHSRKTSHIVEQVRIRMAQQICGDLAPTG-ILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQ 640 (692) Q Consensus 562 ~~~kD~~~LtE~VR~aL~R~I~~~~~~~g-~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~ 640 (692) ++|||...||||||.+|+|||||||+..| .++++.++++.|+.+|+++|||+.|+| +++||+..+.+++++++.+.. T Consensus 558 ~kEKDvv~LtEYVR~aL~R~Ic~k~s~~~~~l~a~ll~~~iE~~iR~~IRqTsaGsy--LaLdp~~~e~il~~ir~~l~~ 635 (689) T COG4789 558 PKEKDVVMLTEYVRSALKRYICHKFSNGGTILPALLLDPEIEDVIREAIRQTSAGSY--LALDPRQSEAILDQIRNILSG 635 (689) T ss_pred CCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCC T ss_conf 557763321999999999999887458986114899472489999874035788872--326988999999999987078 Q ss_pred HHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC Q ss_conf 9956998799828335489999988644898189440178996579888609 Q gi|254780512|r 641 YIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692) Q Consensus 641 ~~~~g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692) ....+.+||++||.|+|||+||++|+++|++|||||+|+.++++++++|+|. T Consensus 636 ~~~~~q~~vlltS~DiRRyVrkliE~~~~dl~VLSyQEl~~~i~i~~lg~I~ 687 (689) T COG4789 636 TPAPGQDPVLLTSVDIRRYVRKLIESSFPDLPVLSYQELGEEINIQPLGTIV 687 (689) T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEHHHHCCCCCCEEEEEEE T ss_conf 8678888079984039999999731247886454088853664411420671 No 9 >PRK05910 type III secretion system protein; Validated Probab=100.00 E-value=0 Score=1586.28 Aligned_cols=573 Identities=28% Similarity=0.416 Sum_probs=522.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10013458999999999999603847899999999999999999999513770454200489999999998554888889 Q gi|254780512|r 14 RNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRA 93 (692) Q Consensus 14 ~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRl 93 (692) ..+.+++.+++++++|++|||+|||+|+||+++++||++|+++||+++|+++|||||+|||+||++|||||||||||||+ T Consensus 3 ~~~~~~~~~~~~~v~iv~~~i~PlP~~llD~ll~~ni~~s~lill~s~y~~~pl~fS~FPslLLi~TLfRLsLniasTRl 82 (583) T PRK05910 3 SKRGSSWKMVLIPLCILFTLLLPLPQWLLDFGLCINFALSLSIVFWVFSLRSSASAKLFPSLFLYLCLLRLGLNLASTRW 82 (583) T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 74443167999999999998618978999999999999999999999973881131005499999999999998999999 Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 88437777632678999875145013269999999999999998864575146665545442037603454787876489 Q gi|254780512|r 94 ILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGL 173 (692) Q Consensus 94 IL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~ 173 (692) ||+||| ||+||+|||+||+|||||||+|||+||++|||+||||||||||||+||||||||||||||||||||||+ T Consensus 83 IL~~g~-----aG~vI~aFG~FVvgGn~vVG~vvF~Il~ivqFiVITKGa~RVAEVaARFTLDaMPGKQMaIDADLnaG~ 157 (583) T PRK05910 83 ILSSGW-----ASPLIFSLGNFFSLGSLPAATTACLLLFLVNFLVITKGSERIAEVRARFSLEALPGKQMSLDADLVSGR 157 (583) T ss_pred HHHCCC-----CCHHHHHHHHHEECCCEEEEHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC T ss_conf 984688-----744999851315658545711364798666442771583288788776300468863220675865599 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99899999999998652222012201345301058999999999888999999973998899999989998645788851 Q gi|254780512|r 174 IEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQV 253 (692) Q Consensus 174 I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQI 253 (692) ||++|||+||++++||||||||||||||||||||||||+|++||++||++|| |++++|+++|++||||||||||| T Consensus 158 Id~~eAr~RR~~l~~Ea~fyGAMDGAsKFVkGDAIAgiiI~~iNiiGG~~iG-----m~~~~a~~~y~lltIGDGLVsQI 232 (583) T PRK05910 158 ASYSRVSKQKNSLLEESDFFSAMEGVFRFVKGDAIMSCILLGVNVLAATFLG-----YSSGYAVESLWLTVLGDALVSQV 232 (583) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999976566650321466632039999999999998896402-----01778887756655134699888 Q ss_pred HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58999873310266237743058999998761864899999999998615786478999999999999998864432222 Q gi|254780512|r 254 PALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQR 333 (692) Q Consensus 254 PaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~~~~~ 333 (692) |||++|+|||++|||+++++|+|+++.+|++++|++|+++|+++++||++||||++||+.+|+++ +.+| |+.+..+ T Consensus 233 PaLliS~aaGiiVTR~~~~~~l~~~i~~ql~~~~~~l~~~a~~l~~~~lvPG~P~~~fl~~a~~~-~~~~---~~~~~~~ 308 (583) T PRK05910 233 PALLTSCAAATLISKVGEKESLLQHLFDYYEQARQHFRVIALLLCSLACIPGAPKAPILLFAVLL-FLAY---KKPKSAE 308 (583) T ss_pred HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHH---CCCCCCC T ss_conf 89999987772477056754469999999844863999999999999874487079999999999-9973---3876645 Q ss_pred HHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC Q ss_conf 100110002356676753001002460122101-1111234575526889999999999980987883244543778987 Q gi|254780512|r 334 LAKVAQIQEASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEK 412 (692) Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~ 412 (692) . . ...+.+++..+ .++ ..+++++.+|++.+||+++.|+||++|.+++.++.+++| T Consensus 309 ~-------------~-------~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~R~~~a~elG~~~P~~~~~~~~~~~~- 364 (583) T PRK05910 309 E-------------L-------SFIKERFEYVELALP---KEGTGNPYELYRAAREEIFQELGVRLPEEIVVRYVEKSP- 364 (583) T ss_pred C-------------H-------HCCCHHHHHCCCCCC---CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC- T ss_conf 5-------------0-------004145521012488---456888899999999999997598889465642555585- Q ss_pred EEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHH Q ss_conf 16999748245348841783413305888767887410147668830343978845888289907058899999999999 Q gi|254780512|r 413 GYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVI 492 (692) Q Consensus 413 ~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evi 492 (692) ++.+.|.+++.+ ++.+||++|++ T Consensus 365 --~~~~~g~~~~~~-------------------------------------------------------ev~~tHL~eii 387 (583) T PRK05910 365 --RLSFSGQEVYLD-------------------------------------------------------ELSCEALLPIL 387 (583) T ss_pred --CEEECCEEEECC-------------------------------------------------------CCHHHHHHHHH T ss_conf --532277488511-------------------------------------------------------10287899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 98799987299999999997666489999863115998999999999997498654699999999875335799899999 Q gi|254780512|r 493 RNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVE 572 (692) Q Consensus 493 r~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE 572 (692) |+||+|++|+||+|+|+|+++++||++|||++|+++|++.+|+||||||+|+|||||+++|+|||+||++++|||+.||| T Consensus 388 r~~A~ELLgrqevq~LLd~l~~~~p~lVeelvP~~lsl~~i~~VLQ~LL~E~VsIRDLrtILEtLad~a~~~kDp~~LtE 467 (583) T PRK05910 388 RNLAPEAIHERFVKKLVEEFQEVLGISIEEIIPKKISENSLVFLLRALVRERVSLHLFPKILEAIAVYGSQGDSLEILAE 467 (583) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 98699886799999999999876607888873465787899999999986798623388999999985445699999999 Q ss_pred HHHHHHHHHHHHHHC-CCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 999998999865207-7884899988878999999983037778846456698899999999999999999569987998 Q gi|254780512|r 573 QVRIRMAQQICGDLA-PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIV 651 (692) Q Consensus 573 ~VR~aL~R~I~~~~~-~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl 651 (692) |||++|+||||++|. ++|+|+|++|+|++|+.++++.++ .+|+..+++++++++.+++....+ .|+++ T Consensus 468 ~VR~aL~R~I~~~~~~~~g~L~VitLdp~lEq~l~~s~~~----------~~P~l~~~li~~l~~~~~~~~~~~-~~vlL 536 (583) T PRK05910 468 KVRKYLGKQIGRSLWDQKDTLEVITIDSHVEQFIRDSYSK----------SNPDMNEKVVRQVKSLLERSGEGD-FRAIV 536 (583) T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHCCC-CCEEE T ss_conf 9999999999998458998258999688999999876651----------794189999999999999985689-98698 Q ss_pred ECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC Q ss_conf 28335489999988644898189440178996579888609 Q gi|254780512|r 652 TLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692) Q Consensus 652 ~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692) |||++|||+|+++|+++|+++||||||||++++++++|+|| T Consensus 537 ts~~iRr~lrrlie~~~p~L~VLSy~EI~~~~~I~vvGtVs 577 (583) T PRK05910 537 TGCETRFELKKMVDPHFPDLLVLSHSELPEEIPISLLGAVS 577 (583) T ss_pred CCCCHHHHHHHHHHHHCCCCEEECHHHCCCCCEEEEEEEEE T ss_conf 08303899999999877998697712069998268999972 No 10 >PRK10527 hypothetical protein; Provisional Probab=92.90 E-value=0.16 Score=30.77 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=18.2 Q ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHH Q ss_conf 9999861-578647899999999999 Q gi|254780512|r 296 FMIVLSV-MPNLPAFPFIMLGGFFAC 320 (692) Q Consensus 296 ~l~~lgl-vPGmP~~~Fl~la~~l~~ 320 (692) .++.+|. +|++|+.||+.+|+.|.. T Consensus 15 ~LG~iGi~LP~LPTTpFlLLAa~cFa 40 (125) T PRK10527 15 VLGTLGVVLPLLPTTPFILLAAWCFA 40 (125) T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999883778887399999999998 No 11 >PRK06012 flhA flagellar biosynthesis protein FlhA; Validated Probab=92.87 E-value=0.82 Score=25.43 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=32.2 Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0589999987618648999999999986157864789999999999999988644322221001 Q gi|254780512|r 274 STNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKV 337 (692) Q Consensus 274 ~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~~~~~~~~~ 337 (692) +++.|+..|=.+---+=.+...+.++=|+ |-+|++.+....+.+++.-++..++++.....+. T Consensus 276 ~i~~Ql~~~p~al~i~a~il~~lglvPG~-P~~~Fl~la~~l~~~~~~l~~~~~~~~~~~~~~~ 338 (691) T PRK06012 276 AIVGQLFANPKALYIAAGVLFLLGLVPGM-PHLPFLLLAGLLGFLAYRLRKREKKEAEEAAAEA 338 (691) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 99999972967899999999999875898-1679999999999999998741012323344444 No 12 >pfam06277 EutA Ethanolamine utilisation protein EutA. This family consists of several bacterial EutA ethanolamine utilisation proteins. The EutA protein is thought to protect the lyase (EutBC) from inhibition by CNB12. Probab=89.31 E-value=1.7 Score=22.97 Aligned_cols=239 Identities=19% Similarity=0.190 Sum_probs=125.6 Q ss_pred EEECCCCCCCEEEEEECCEEEEEEEECCC-CEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHH Q ss_conf 45437789871699974824534884178-34133058887678874101476688303439788458882899070588 Q gi|254780512|r 403 VTTDISLPEKGYTIRVYGTTVAISELRVG-EVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNL 481 (692) Q Consensus 403 IrDn~~L~~~~Y~I~I~Gv~va~gei~~~-~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~ 481 (692) +.-|..=....|.++-+|..++.+.+..| +++..+++ | .-..|.|.-+.-++..|+..-... T Consensus 146 lNiDIGGGTtn~Alf~~G~v~~t~cl~IGGRLi~~d~~-------g----------rit~i~~~~~~~~~~~g~~~~~G~ 208 (473) T pfam06277 146 LNIDIGGGTTNLALFENGEVIDTACLDIGGRLIKIDPT-------G----------RITYISPKGRRLIAELGLELEVGD 208 (473) T ss_pred EEEEECCCCEEEEEEECCEEEEEEEEEECCEEEEECCC-------C----------CEEEECHHHHHHHHHCCCCCCCCC T ss_conf 99886688305799858889898757053479999799-------9----------689978779999998299875556 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 9999999999998799987299999999997666-489999863115998999999999997498654699999999875 Q gi|254780512|r 482 AVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE-YQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEV 560 (692) Q Consensus 482 ~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~-~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~ 560 (692) .+=..++.+++++-+.-++.. +... .+.+.+++.... + |....++. -.+.=-..+|+ T Consensus 209 ~~~~~~l~~i~~~Ma~~l~~~---------i~~~p~~~l~~~L~~~~-~-----------l~~~~~~~-~vtfSGGVae~ 266 (473) T pfam06277 209 RATPEQLDQVCREMAQLLEEV---------LGGQPESPLAQLLMTTK-P-----------LPGLDRID-CVTFSGGVADC 266 (473) T ss_pred CCCHHHHHHHHHHHHHHHHHH---------HCCCCCCHHHHHHHCCC-C-----------CCCCCCCC-EEEECCCHHHE T ss_conf 079999999999999999999---------55888986999974689-9-----------98778878-89982532431 Q ss_pred --HCCCCCH-------HHHHHHHHHHHH-----------------------------HHHHH--HHCCCCEEEEEEECH- Q ss_conf --3357998-------999999999989-----------------------------99865--207788489998887- Q gi|254780512|r 561 --APHSRKT-------SHIVEQVRIRMA-----------------------------QQICG--DLAPTGILNILKLGN- 599 (692) Q Consensus 561 --a~~~kD~-------~~LtE~VR~aL~-----------------------------R~I~~--~~~~~g~L~vi~L~p- 599 (692) ...+.|+ ..|...+|.... .+|.- ..-|-..+||+-++. T Consensus 267 iY~~~~~d~f~yGDiG~lLg~al~~~~~~~~~~v~~p~etIRATViGAg~hT~~lSGSTI~~~~~~LPlrNiPVl~~~~~ 346 (473) T pfam06277 267 IYREEEADPFRYGDIGPLLGKALRRSPDLLSLKVLQPAETIRATVVGAGSHTTELSGSTITYTADLLPLKNLPVLKPSLD 346 (473) T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHCHHCCCCCEECCCCCEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCEEECCCC T ss_conf 63677778755454689999999727330477365799860589981565069985214985366455257856405745 Q ss_pred -------HHHHHHHHHHHC-CCCCCC--CCC------CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH Q ss_conf -------899999998303-777884--645------6698899999999999999999569987998283354899999 Q gi|254780512|r 600 -------HWDMIFYQAIQR-DSKGEC--VDF------NVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMI 663 (692) Q Consensus 600 -------~lE~~l~~~i~~-t~~G~~--~~l------~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~l 663 (692) ++++.+++++.. .-++.. ..+ ...=...+.+.+.+.+.+++....+.|.++++-.|+=+.+-+. T Consensus 347 ~e~~~~~~l~~~i~~al~~fdl~~~~~~vALA~~g~~~~~y~~i~~la~~i~~~~~~~~~~~~PLiiv~e~D~gK~LG~~ 426 (473) T pfam06277 347 DEEQGNEPLAEAIRQALAWFDLEGEVQPVALAFPGLKNPSFQAVQALAEAIAEGMADLIERGLPLIIVVEQDMAKVLGQT 426 (473) T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHH T ss_conf 33267688999999999875155777508999568999999999999999999986336689988999846189999999 Q ss_pred HHHHCC-CCCEEEECCCC Q ss_conf 886448-98189440178 Q gi|254780512|r 664 LERNFP-SLAVLSHMEIA 680 (692) Q Consensus 664 le~~~p-~l~VLS~~EI~ 680 (692) +....+ +.+|++..++. T Consensus 427 l~~~l~~~~~vi~ID~V~ 444 (473) T pfam06277 427 LQALLGPKKPIICIDSIK 444 (473) T ss_pred HHHHCCCCCCEEEEEEEE T ss_conf 998608899889996599 No 13 >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Probab=88.71 E-value=1.9 Score=22.68 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=50.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCC-CCCEEEECCCC Q ss_conf 98899999999999999999569987998283354899999886448-98189440178 Q gi|254780512|r 623 EPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFP-SLAVLSHMEIA 680 (692) Q Consensus 623 ~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~lle~~~p-~l~VLS~~EI~ 680 (692) .=...+.+.+.+.+.+.+...++.|.++++-.|+=+.+-+.+....+ +.++++..++. T Consensus 383 ~y~~i~~la~~i~~~~~~~~~~~~PLivv~e~D~gK~LG~~l~~~l~~~~~li~ID~V~ 441 (471) T PRK10719 383 SFAAVQTVAKALVDGVARFIPNPHPLIVVAEQDFGKVLGQLLRPQLPKQLPLICIDEVK 441 (471) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 99999999999999886225578888999856089999999998638999889995489 No 14 >TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family Probab=85.32 E-value=2.9 Score=21.37 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=25.3 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 34547878764899989999999999865 Q gi|254780512|r 161 KQMAIDADLSSGLIEEEEAKRRRKELEEE 189 (692) Q Consensus 161 KQMaIDaDl~aG~I~~~eA~~rR~~l~~E 189 (692) .---+|.|+..|.|+++|+.+-|.|++|. T Consensus 44 qL~ELe~d~~~G~l~~~e~~~~r~El~rr 72 (117) T TIGR03142 44 RLAELERDLAEGLLDEAEAEAARAELQRR 72 (117) T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 99999999986998999999999999999 No 15 >COG2832 Uncharacterized protein conserved in bacteria [Function unknown] Probab=82.33 E-value=1.6 Score=23.19 Aligned_cols=29 Identities=31% Similarity=0.668 Sum_probs=19.8 Q ss_pred HHHHHHHHHHH----CCCCHHHHHHHHHHHHHH Q ss_conf 99999999861----578647899999999999 Q gi|254780512|r 292 ISAFFMIVLSV----MPNLPAFPFIMLGGFFAC 320 (692) Q Consensus 292 iaa~~l~~lgl----vPGmP~~~Fl~la~~l~~ 320 (692) +.|.++.++|. +|.||+.||+.+|+.|.. T Consensus 8 ~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFa 40 (119) T COG2832 8 ILGFLSLALGIIGIFLPLLPTTPFLLLAAACFA 40 (119) T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH T ss_conf 999999999899760765678679999999997 No 16 >TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972 This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes. The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . . Probab=81.80 E-value=2.9 Score=21.36 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=55.2 Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHCCCCH------HHHHHHHHHH Q ss_conf 99987999--8729999999999766648999-986311599899999999999749865------4699999999 Q gi|254780512|r 491 VIRNNLSQ--LLSYKDVKNLISRLDPEYQKLA-EETCSSHISYSGIQAVLKLLLAEHVSI------RNLPLILESI 557 (692) Q Consensus 491 vir~~a~e--llg~qEvq~LLd~L~~~~P~LV-~Elvp~~v~l~~i~~VLq~LL~E~VsI------Rdlr~IlEaL 557 (692) .|.++.+. =++-+|.++|-.+=-..|-+|. +|+.|+-+=+| |.+.|+.|=+.+++| ||-++|||.| T Consensus 53 ~IL~~~~~En~~s~~e~~~la~~KN~~Y~~LlD~~lTp~d~LPG-i~~lL~~Lk~~~ikialASaSkNA~~vLekL 127 (190) T TIGR01990 53 RILKLGGKENKYSEEEKEELAERKNDYYVELLDKELTPEDVLPG-IKSLLEDLKKKNIKIALASASKNAPTVLEKL 127 (190) T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC-HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH T ss_conf 99733798888577899999998779999997506898660401-8999999998489488730234489999982 No 17 >PRK05858 hypothetical protein; Provisional Probab=79.89 E-value=4.5 Score=19.91 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=24.8 Q ss_pred HCCCCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH Q ss_conf 7399889999998999---------864578885158999873310 Q gi|254780512|r 228 RYDMSIHHAADVFVRL---------SVGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 228 q~gm~~~eA~~~Yt~L---------TIGDGLVsQIPaLliS~aaGi 264 (692) .|--..+-|+.-|+.. |-|=|+..-+++|.-+-..++ T Consensus 51 rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~~~~ 96 (543) T PRK05858 51 RHEQTAAFAAEGWSKVTRVPGVAALTAGPGVTNGMSAMAAAQQNQS 96 (543) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 9689999999999999799889998367169999999999997399 No 18 >pfam11829 DUF3349 Protein of unknown function (DUF3349). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. Probab=75.01 E-value=6 Score=18.95 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=52.1 Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 999999997666489---------99986311599899999999999749865469999999987533579989999999 Q gi|254780512|r 504 DVKNLISRLDPEYQK---------LAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQV 574 (692) Q Consensus 504 Evq~LLd~L~~~~P~---------LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~V 574 (692) -+++++++|+.-||+ |. -++.+.++=.++.+|-+.|.+++.+=-|---|=+.+.+...+...++. .|.| T Consensus 4 ~l~~iv~WLRaGYP~GvP~~Dy~pLL-ALL~r~Ltddev~~Va~~L~~~~~~~i~~~dI~~~I~~vt~~~P~p~d-i~RV 81 (97) T pfam11829 4 FLASIVAWLRAGYPEGVPGPDYVPLL-ALLRRRLTDDEVAEVAAELTRRGEPAIDDDDIGVLITAVTDELPSPED-VERV 81 (97) T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHH-HHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHH-HHHH T ss_conf 99999999986899998988708999-998142889999999999986478999999999999998747989899-9999 Q ss_pred HHHHHH Q ss_conf 999899 Q gi|254780512|r 575 RIRMAQ 580 (692) Q Consensus 575 R~aL~R 580 (692) |.+|.+ T Consensus 82 ~arLaa 87 (97) T pfam11829 82 RARLAA 87 (97) T ss_pred HHHHHH T ss_conf 999986 No 19 >PRK06456 acetolactate synthase catalytic subunit; Reviewed Probab=74.53 E-value=6.2 Score=18.86 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=21.2 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------6457888515899987331 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAA 263 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaG 263 (692) ..|-...+-|+.-|+.+| -|=|+-.-++++.-+-..+ T Consensus 49 ~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~d~ 94 (572) T PRK06456 49 MRHEQAAAHAADGYARASGFPGVCTATSGPGVTNLVTGLITAYWDS 94 (572) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 2978999999999999969988999803636999999999999749 No 20 >PRK02463 OxaA-like protein precursor; Provisional Probab=73.59 E-value=3.8 Score=20.43 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HCCC----CHHHHHH Q ss_conf 7899987514501326999999999999999886----4575----1466655 Q gi|254780512|r 106 GGIIAGFSSLVMSGDFVIGLVVFMILITINFIVI----TKGA----TRIAEVG 150 (692) Q Consensus 106 G~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVI----tkGa----~RvaEV~ 150 (692) .++|+-|+++. ||||-+++|+|.|++=+=.+=. +|-+ ++.++.. T Consensus 46 ~~~i~~~a~~~-g~nyG~aIIl~TiiIRlillPL~~~Q~kk~~~~q~KMq~lQ 97 (307) T PRK02463 46 SYFIDYFANNL-GLGFGLAIIIVTIIVRTLILPLGLYQSWKATYQSEKMAYLK 97 (307) T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC T ss_conf 99999999863-87733899999999999998301889998899999999858 No 21 >PRK06112 acetolactate synthase catalytic subunit; Validated Probab=72.07 E-value=7 Score=18.45 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=29.5 Q ss_pred HHCCCCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHEE Q ss_conf 9739988999999899986---------457888515899987331026 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLSV---------GDGLVSQVPALIISLSAAFLV 266 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LTI---------GDGLVsQIPaLliS~aaGiiV 266 (692) ..|-...+-|+.-|+.+|= |=|.-.-++++.-+-+..+=| T Consensus 58 ~rhE~~Aa~mAdgyAR~tG~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pv 106 (581) T PRK06112 58 YRTENAGGAMADGYARVSGKPAVVTAQNGPAAALLVAPLAEALKASVPI 106 (581) T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHCCCE T ss_conf 3988999999999999809959999663889999999999997028987 No 22 >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA .. Probab=70.22 E-value=7.6 Score=18.17 Aligned_cols=76 Identities=13% Similarity=0.230 Sum_probs=54.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECHH---HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999989998652077884899988878---9999999830377788464566988999999999999999995699 Q gi|254780512|r 570 IVEQVRIRMAQQICGDLAPTGILNILKLGNH---WDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGI 646 (692) Q Consensus 570 LtE~VR~aL~R~I~~~~~~~g~L~vi~L~p~---lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~ 646 (692) ..+..|..|+.+||.-++|++... ++|.|+ |=+.|-+.++. ....++|..++.++..+...+..-..+ . T Consensus 2 ~~r~l~~~lG~~i~~~LdD~~vvE-IMLNpDG~Lwve~Lg~G~~~------~G~t~~~~~a~~Ii~~vA~~l~~~V~~-~ 73 (315) T TIGR02782 2 LVRKLRRALGPEIAAALDDPKVVE-IMLNPDGKLWVERLGEGMEP------LGKTVSPADAERIIGLVADYLGTEVDR-D 73 (315) T ss_pred CHHHHHHHHHHHHHHHHCCCCEEE-EEECCCCHHHHHHCCCCCCC------CCCCCCHHHHHHHHHHHHHHHCCEEEC-C T ss_conf 067899998999999737988389-98669870105006797300------166117899999999998764460435-7 Q ss_pred CEEEEEC Q ss_conf 8799828 Q gi|254780512|r 647 PLTIVTL 653 (692) Q Consensus 647 ~pVLl~s 653 (692) +|.+=+- T Consensus 74 ~PivegE 80 (315) T TIGR02782 74 KPIVEGE 80 (315) T ss_pred CCEEEEC T ss_conf 8626610 No 23 >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Probab=68.89 E-value=8.1 Score=17.97 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=28.7 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|--..+-++.-|+.+| -|=|.-.-++++.-+-..++ T Consensus 51 ~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~~~~ 97 (562) T PRK06048 51 VRHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIATAYMDSV 97 (562) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 38789999999999999799889998156789999999999997399 No 24 >TIGR02871 spore_ylbJ sporulation integral membrane protein YlbJ; InterPro: IPR014226 Members of this entry include YlbJ, from Bacillus subtilis. They are found exclusively in the Firmicutes (low-GC Gram-positive bacteria) and are known from studies in B. subtilis to be part of the sigma-E regulon . Mutation leads to a sporulation defect, confirming that members of this entry are involved in sporulation. The protein appears to be universal among endospore-forming bacteria, and in Symbiobacterium thermophilum IAM 14863, there are two ORFs encoding YlbJ that are distant from each other.. Probab=68.67 E-value=8.2 Score=17.94 Aligned_cols=132 Identities=23% Similarity=0.283 Sum_probs=96.0 Q ss_pred HHHH-CCCCCHHHHHHHHHHHHHHHCC--CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 7876-4899989999999999865222--201220134530105899999999988899999997399889999998999 Q gi|254780512|r 167 ADLS-SGLIEEEEAKRRRKELEEESAF--FGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRL 243 (692) Q Consensus 167 aDl~-aG~I~~~eA~~rR~~l~~Es~f--yGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~L 243 (692) |||+ .|+||.+|++|-=.==.--+=+ .||- |++=| +|.-+|.++..=|=++-+++|...+--.-.+--+.+... T Consensus 98 adLye~~lI~~~e~eRL~nfann~gPLFi~GaV-g~sml--~Np~lGy~Llis~YLs~I~~GLI~~~~~~~~~~~~~~~~ 174 (384) T TIGR02871 98 ADLYEEKLITFEEAERLLNFANNSGPLFIIGAV-GTSML--NNPTLGYILLISHYLSCITVGLILRFKKRKKRKKLSKKK 174 (384) T ss_pred HHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH-HHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 655654774568999999987278837899999-99740--575689999998589999999860777414666556416 Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf ----8645788851589998733102662377430589999987618648999999999986157864789999 Q gi|254780512|r 244 ----SVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIM 313 (692) Q Consensus 244 ----TIGDGLVsQIPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~ 313 (692) ++-|+|-+ .-.+|++++.|+|+-+.+=..+.-+.+..+||...+|.++=.+=+..|+. T Consensus 175 ~~~fS~~~AL~~------------l~~~~~~s~~~~G~~L~~aie~av~til~vgGFvIlFSV~i~~lk~~~l~ 236 (384) T TIGR02871 175 KTEFSLKDALTG------------LHSIRLKSKKNIGKLLKEAIENAVKTILLVGGFVILFSVLISLLKNSFLF 236 (384) T ss_pred CCCCCHHHHHHH------------HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 876657889887------------83235406788768999999999999989966999999999999987788 No 25 >PRK08611 pyruvate oxidase; Provisional Probab=67.41 E-value=8.6 Score=17.76 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=23.3 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|--..+-|+.-|+.+| -|=|+..-++++.-+-..++ T Consensus 49 ~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~N~~~gl~~A~~d~~ 95 (576) T PRK08611 49 VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLYDAKMDNV 95 (576) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 18789999999999999799989997377189999999999997099 No 26 >PRK09107 acetolactate synthase 3 catalytic subunit; Validated Probab=67.24 E-value=8.7 Score=17.74 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=24.5 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-|+.-|+.+| -|=|+-.-++++.-+-+.++ T Consensus 55 ~rhE~~A~~mAdgYar~tgk~gv~~~t~GPG~~N~~~gl~~A~~d~~ 101 (594) T PRK09107 55 VRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSI 101 (594) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCC T ss_conf 38689999999999999789889997467129999999999998499 No 27 >pfam04282 DUF438 Family of unknown function (DUF438). Probab=66.94 E-value=8.8 Score=17.70 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 999766648999986311599899999999999749865469999999 Q gi|254780512|r 509 ISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILES 556 (692) Q Consensus 509 Ld~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEa 556 (692) ++.+++++.+++ +-++...|...=|.|++||+|.++.+....- T Consensus 15 ~e~vk~~F~~~~-----~~Vs~~EI~~~EqeLi~eG~~~~eiq~LCdv 57 (79) T pfam04282 15 PEEVKERFQELF-----KGVSPSEISAMEQELIAEGMPPEEIQKLCDV 57 (79) T ss_pred HHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999999997-----7899999999999999959999999999699 No 28 >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] Probab=66.15 E-value=9.1 Score=17.59 Aligned_cols=114 Identities=13% Similarity=0.239 Sum_probs=71.6 Q ss_pred CCHHHHHHHHHHHHHCCCC----------------------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9989999999999974986----------------------546999999998753357998999999999989998652 Q gi|254780512|r 528 ISYSGIQAVLKLLLAEHVS----------------------IRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGD 585 (692) Q Consensus 528 v~l~~i~~VLq~LL~E~Vs----------------------IRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~ 585 (692) -++..+++.+.-+-+++.+ |.+|+.+|+...-.+.++.+ .++--.-.+||--+..+ T Consensus 157 a~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~nL~~i~~l~~~Fn~~vGlSDHT~g--~~a~l~AvALGA~viEK 234 (347) T COG2089 157 ATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTLG--ILAPLAAVALGASVIEK 234 (347) T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHHHHHHHCCCCEEE T ss_conf 4077799999999966998769998357899977773488799999996876156667653--16789998721001000 Q ss_pred HCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHH Q ss_conf 0778848999888789999999830377788464566988999999999999999995699879982833548999998 Q gi|254780512|r 586 LAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMIL 664 (692) Q Consensus 586 ~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~ll 664 (692) + +||+- +-+|....++|||+..+.+++++++. +.+...|.+-++=--.+.|++.+|-+ T Consensus 235 H--------Ftldk------------~~~GpD~afSldP~efk~mv~~ir~~-~~alG~~~k~~~~~E~~~~~~~~Rsl 292 (347) T COG2089 235 H--------FTLDK------------SREGPDHAFSLDPDEFKEMVDAIRQV-EKALGDGEKEILPSEEETRNFARRSL 292 (347) T ss_pred E--------EEECC------------CCCCCCCCEECCHHHHHHHHHHHHHH-HHHHCCCCCCCCHHHHHHHHHHHHHE T ss_conf 0--------32147------------77899711113889999999999999-99837786545735788999886531 No 29 >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. Probab=64.23 E-value=9.8 Score=17.34 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=25.2 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-++.-|+.+| -|=|.-.-++++.-+-+.++ T Consensus 46 ~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~~~~ 92 (554) T TIGR03254 46 FRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCF 92 (554) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCC T ss_conf 39889999999999999699789998116799999999999986399 No 30 >PRK06725 acetolactate synthase 3 catalytic subunit; Validated Probab=64.15 E-value=9.9 Score=17.33 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=53.9 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 45478787648999899999999998652222012201345301058999999999888999999973998899999989 Q gi|254780512|r 162 QMAIDADLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFV 241 (692) Q Consensus 162 QMaIDaDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt 241 (692) |-.---.|.+.-||..|+=.++-+-.-=...|| |-||.+-.++=-+-+ .|+-.=...|--..+-++.-|+ T Consensus 3 ~~~~~~~~~~~kmtga~~lv~~L~~~GV~~vFG--------vpG~~~~~l~dal~~--~~i~~v~~rhE~~A~~mAdgYa 72 (570) T PRK06725 3 QYTTYEKLQCEEVTGAGHVIQCLKKLGVTTVFG--------YPGGAILPVYDALYE--SGLKHILTRHEQAAIHAAEGYA 72 (570) T ss_pred CCCCCHHCCCCCCCHHHHHHHHHHHCCCCEEEE--------CCCCCHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHHH T ss_conf 433300023255549999999999879999997--------676427999999974--6993980497899999999999 Q ss_pred HHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 998---------64578885158999873310 Q gi|254780512|r 242 RLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 242 ~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..| -|=|+-.-++++.-+.+.++ T Consensus 73 r~tg~~gv~~~t~GPG~~N~~~gl~~A~~~~~ 104 (570) T PRK06725 73 RASGKVGVVFATSGPGATNLVTGLADAYMDSI 104 (570) T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 99789989998057689999999999997399 No 31 >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Probab=63.45 E-value=10 Score=17.24 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHHHHC----CCCEEEEEEECHHHHHHHHHHHHCCCCCC Q ss_conf 99999998999865207----78848999888789999999830377788 Q gi|254780512|r 571 VEQVRIRMAQQICGDLA----PTGILNILKLGNHWDMIFYQAIQRDSKGE 616 (692) Q Consensus 571 tE~VR~aL~R~I~~~~~----~~g~L~vi~L~p~lE~~l~~~i~~t~~G~ 616 (692) =|.=|.+++|.+.++-. |+-+ --||++.|+.+.+++++-.+|. T Consensus 480 GQrQRiaiARAll~~~~iliLDEaT---s~LD~~te~~i~~~l~~~~~~r 526 (575) T PRK11160 480 GEQRRLGIARALLHDAPLLLLDEPT---EGLDAETERQILELLFEHAQNK 526 (575) T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC---CCCCHHHHHHHHHHHHHHCCCC T ss_conf 9999999999994599999984986---6679999999999999866999 No 32 >CHL00099 ilvB acetohydroxyacid synthase large subunit Probab=63.02 E-value=10 Score=17.18 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=27.2 Q ss_pred HCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 73998899999989998---------64578885158999873310 Q gi|254780512|r 228 RYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 228 q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) .|-...+-|+.-|+.+| -|=|+-+-+.++.-+-+.++ T Consensus 57 rhE~~A~~aAdgYAR~tGk~gv~~~t~GpG~~Na~~gi~~A~~~~~ 102 (588) T CHL00099 57 RHEQGAAHAADAYARSTGKVGVCFATSGPGATNLVTGIATAQMDSV 102 (588) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 9789999999999999699989998037789999999999998299 No 33 >TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family; InterPro: IPR012807 The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains as several smaller homologues (excluded in this entry) show homology only to the C-terminal region including a motif: PxHxHxGxE.. Probab=62.85 E-value=9.4 Score=17.49 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHCCCCHHHHHHHHHHH Q ss_conf 99999999999879998729999999999766648999----------------98631159989999999999 Q gi|254780512|r 483 VVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLA----------------EETCSSHISYSGIQAVLKLL 540 (692) Q Consensus 483 ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV----------------~Elvp~~v~l~~i~~VLq~L 540 (692) |+||||+- .+|+|.+.+.++..-.+|. +|+.|.-+.-+.+..|+..+ T Consensus 23 vVAtHl~l-----------Cp~Cr~~~a~~~a~gG~ll~~sssddPvqh~A~~~~~~~~~a~~~~~ld~v~A~~ 85 (234) T TIGR02451 23 VVATHLAL-----------CPECRARIAALEALGGELLFVSSSDDPVQHNASKEEDLEPEALWQGMLDNVMALL 85 (234) T ss_pred HHHHHHHH-----------CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCC T ss_conf 55656662-----------5788999988647665654102567614441476424674763468899984246 No 34 >TIGR01113 mtrE tetrahydromethanopterin S-methyltransferase, subunit E; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump.5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane. Probab=62.76 E-value=7.3 Score=18.29 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=4.2 Q ss_pred CCHHHHHHHH Q ss_conf 3058999998 Q gi|254780512|r 273 GSTNTAIVEQ 282 (692) Q Consensus 273 ~~lg~~i~~Q 282 (692) +|+-+||+.| T Consensus 18 EDlESDvGSQ 27 (298) T TIGR01113 18 EDLESDVGSQ 27 (298) T ss_pred HHHHHCCCCC T ss_conf 6555157764 No 35 >PRK01622 OxaA-like protein precursor; Validated Probab=61.13 E-value=11 Score=17.04 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999875145013269999999999999998864 Q gi|254780512|r 107 GIIAGFSSLVMSGDFVIGLVVFMILITINFIVIT 140 (692) Q Consensus 107 ~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVIt 140 (692) +.|..|+++ .||||.+++|+|.|++=+=..=.| T Consensus 47 ~~i~~~a~~-~~gnyGlaIIl~TiivRlil~PL~ 79 (266) T PRK01622 47 FLIQFVAHH-IHGSYGIAIIIVTLIIRSLMIPLA 79 (266) T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999999987-588499999999999999998702 No 36 >TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes.. Probab=61.08 E-value=5 Score=19.51 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=69.8 Q ss_pred HHHHCCCCHHHHHHHHHHHH---HCCCCHHHH--HHHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHH--- Q ss_conf 86311599899999999999---749865469--999999987533579989999-------999999899986520--- Q gi|254780512|r 522 ETCSSHISYSGIQAVLKLLL---AEHVSIRNL--PLILESIAEVAPHSRKTSHIV-------EQVRIRMAQQICGDL--- 586 (692) Q Consensus 522 Elvp~~v~l~~i~~VLq~LL---~E~VsIRdl--r~IlEaLad~a~~~kD~~~Lt-------E~VR~aL~R~I~~~~--- 586 (692) ++-.+--||..+-+.|.+.- .+=-.+||. =-+-.+|=|||..+..-..|- |-|| -+|.-+ T Consensus 197 ~i~SDCapL~~lv~~ll~~~g~~~~v~~~RD~TRGGLA~vLNE~A~~sg~~i~l~E~~iPV~eeV~-----gaCE~LGld 271 (345) T TIGR02124 197 NIESDCAPLNGLVEALLAVGGYEPAVHAMRDATRGGLAAVLNEIAESSGVGIELEEEKIPVKEEVK-----GACELLGLD 271 (345) T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHH-----HHHHHHCCC T ss_conf 733327765899999984379871423761678550478999999961992799852478837899-----999861703 Q ss_pred ----CCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHH Q ss_conf ----778848999888789999999830377788464566988999999999999999995699-879982833548999 Q gi|254780512|r 587 ----APTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGI-PLTIVTLPEIRSYIR 661 (692) Q Consensus 587 ----~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~-~pVLl~s~~iRr~lr 661 (692) +.+|.+ ++.++||-++...+.+|.++.|.... .++..+ .++.. .++|=|+-.-+|.+= T Consensus 272 Pl~lANEG~~-v~~V~~E~A~~vLe~lk~hp~G~~A~---------YiIG~V-------~e~~~~~V~l~t~~G~~R~ld 334 (345) T TIGR02124 272 PLYLANEGKL-VLAVPPEAAEKVLEILKSHPLGKDAA---------YIIGEV-------VEKKEGLVVLKTAYGGKRILD 334 (345) T ss_pred HHHHHCCCEE-EEEECHHHHHHHHHHHHHCCCCCCCC---------EEEEEE-------EECCCCEEEEEECCCCEEEEE T ss_conf 2542047628-99828377999999986077643321---------563014-------737987799970688405655 Q ss_pred HHHHHHCC Q ss_conf 99886448 Q gi|254780512|r 662 MILERNFP 669 (692) Q Consensus 662 ~lle~~~p 669 (692) ...=..+| T Consensus 335 ~p~GE~LP 342 (345) T TIGR02124 335 MPSGELLP 342 (345) T ss_pred CCCCCCCC T ss_conf 35678788 No 37 >PRK07979 acetolactate synthase 3 catalytic subunit; Validated Probab=58.54 E-value=12 Score=16.64 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=34.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 01058999999999888999999973998899999989998---------64578885158999873310 Q gi|254780512|r 204 RGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 204 kGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) -||.+..++=-+-+- +|+-.=...|-...+-++.-|+..| -|=|.-+-+.++.-+-+.++ T Consensus 26 pG~~~~~~~dal~~~-~~i~~i~~rhE~~A~~mAdgYar~tG~~gv~~~t~GPG~~N~~~gl~~A~~d~~ 94 (574) T PRK07979 26 PGGAVLDIYDALHTV-GGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSI 94 (574) T ss_pred CCCCHHHHHHHHHHC-CCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 771469999998753-898299038789999999999999699889998267369999999999996099 No 38 >PRK06882 acetolactate synthase 3 catalytic subunit; Validated Probab=57.64 E-value=13 Score=16.53 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=24.3 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-++.-|+..| -|=|.-.-+.++.-+-+.++ T Consensus 48 ~rhE~~A~~mAdgyaR~tg~~gv~~~t~GPG~~N~~~gl~~A~~d~~ 94 (574) T PRK06882 48 VRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIATAYADSV 94 (574) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 48789999999999999699889998367249999999999998499 No 39 >PRK11195 major facilitator family transporter; Provisional Probab=57.54 E-value=13 Score=16.52 Aligned_cols=72 Identities=21% Similarity=0.157 Sum_probs=29.2 Q ss_pred HHHHHHHHHEEE--------ECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHH Q ss_conf 999873310266--------23774305899999876186489999999999861578647-899999999999999886 Q gi|254780512|r 256 LIISLSAAFLVS--------RTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPA-FPFIMLGGFFACAGFYVP 326 (692) Q Consensus 256 LliS~aaGiiVT--------Rvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~-~~Fl~la~~l~~~a~~~~ 326 (692) +++.+.+|+.+- |...+-..|.-|.-|=+.+.-++...+++..++ .-=|+|- ..++.++.......|..+ T Consensus 316 ~llG~~gG~fvVPLnAliQ~r~~~~~~aGr~iA~qN~~~n~~m~~~~~~~~~~-~~~g~~~~~~~~~~g~~~~~~~~~~~ 394 (415) T PRK11195 316 ILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVPVIVGFGLFVALAMWLLW 394 (415) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999725300165699875472202456653200199999999999999999-98799799999999999999999999 Q ss_pred HH Q ss_conf 44 Q gi|254780512|r 327 YK 328 (692) Q Consensus 327 r~ 328 (692) |. T Consensus 395 ~~ 396 (415) T PRK11195 395 RW 396 (415) T ss_pred HH T ss_conf 99 No 40 >pfam01944 DUF95 Integral membrane protein DUF95. Members of this family have several predicted transmembrane regions. The function of this family is unknown. Probab=56.19 E-value=13 Score=16.37 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHEEEEC--CCCCCHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 6457888515899987331026623--77430589999987618648999999999 Q gi|254780512|r 245 VGDGLVSQVPALIISLSAAFLVSRT--TSKGSTNTAIVEQLSHYPRALLISAFFMI 298 (692) Q Consensus 245 IGDGLVsQIPaLliS~aaGiiVTRv--ss~~~lg~~i~~Ql~~~p~aL~iaa~~l~ 298 (692) .-.|+. -|||+++|-++|+...+. ..... .+...+++..+.+.+...+.+++ T Consensus 98 lPHgi~-EIpa~~ia~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll 151 (164) T pfam01944 98 LPHGIL-EIPAIIIAGAAGLRLGWALIFPGFL-EEALKKAFRKAVLLLLLGVVLLL 151 (164) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHH T ss_conf 713689-9999999999999999999706543-06679999999999999999999 No 41 >PRK09259 putative oxalyl-CoA decarboxylase; Validated Probab=56.19 E-value=13 Score=16.36 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=22.2 Q ss_pred HHCCCCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 97399889999998999---------86457888515899987331 Q gi|254780512|r 227 FRYDMSIHHAADVFVRL---------SVGDGLVSQVPALIISLSAA 263 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~L---------TIGDGLVsQIPaLliS~aaG 263 (692) ..|-...+-++.-|+.+ |-|=|+..-++++.-+-..+ T Consensus 56 ~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~tgl~~A~~~~ 101 (572) T PRK09259 56 FRHEQSAGNAAAAAGFLTQKPGICLTVSAPGFLNGLTALANATTNC 101 (572) T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHC T ss_conf 0968999999999999868978999805718999999999998339 No 42 >PRK08266 hypothetical protein; Provisional Probab=55.79 E-value=13 Score=16.32 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=28.9 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-.+.+-++.-|+..| -|=|+-.-+|++.-+-..++ T Consensus 46 ~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~v~~A~~~~~ 92 (531) T PRK08266 46 TRHEQAAGYMAFGYARSTGRPGVFSVVPGPGVLNAGAALLTAYGCNA 92 (531) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 28789999999999999799789998258269989999999986299 No 43 >COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only] Probab=55.72 E-value=13 Score=16.31 Aligned_cols=101 Identities=9% Similarity=0.078 Sum_probs=51.0 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHCCCCCH-HHHHHHHH--HHHHHHHHHHHCCCCEEEEEEECHHHH Q ss_conf 899999999999749865469999999----98753357998-99999999--998999865207788489998887899 Q gi|254780512|r 530 YSGIQAVLKLLLAEHVSIRNLPLILES----IAEVAPHSRKT-SHIVEQVR--IRMAQQICGDLAPTGILNILKLGNHWD 602 (692) Q Consensus 530 l~~i~~VLq~LL~E~VsIRdlr~IlEa----Lad~a~~~kD~-~~LtE~VR--~aL~R~I~~~~~~~g~L~vi~L~p~lE 602 (692) +.+++++.+..+.+ +|+.|++-+-+. ...+....+=| -.|+.-+| .+|.--|..+. ..|.|.++ T Consensus 218 i~rlq~aine~i~~-ts~~d~~~~s~~~h~l~mk~~~~geI~ls~lSdg~Rt~~Alvadiarr~--------v~LNp~Ls 288 (440) T COG3950 218 IARLQDAINENISS-TSWNDLLIGSQRKHELFMKHGNGGEIPLSELSDGPRTKFALVADIARRC--------VVLNPYLS 288 (440) T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHCCCCHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH--------HHCCHHHC T ss_conf 99999987510466-7504555203430478870577771010330311488999999998889--------63682112 Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999983037778846456698899999999999999 Q gi|254780512|r 603 MIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIR 639 (692) Q Consensus 603 ~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~ 639 (692) +.+...-.--.--...++-+.|.+.|++.+.+..++. T Consensus 289 d~la~~tpgivLiDeIdlflhP~WQQqi~qkL~saFp 325 (440) T COG3950 289 DALAKLTPGIVLIDEIDLFLHPKWQQQINQKLLSAFP 325 (440) T ss_pred CHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCH T ss_conf 6544489866974220110288899999999986443 No 44 >PRK07282 acetolactate synthase catalytic subunit; Reviewed Probab=54.88 E-value=14 Score=16.22 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=26.2 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-.+.+-++.-|+.+| -|=|.-.-++++.-+-+.++ T Consensus 54 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~~~~ 100 (566) T PRK07282 54 ARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIADAMSDSV 100 (566) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 28789999999999999799889999068579989999999998399 No 45 >PRK08327 acetolactate synthase catalytic subunit; Validated Probab=54.73 E-value=14 Score=16.20 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=29.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 999973998899999989998---------64578885158999873310 Q gi|254780512|r 224 IGCFRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 224 iG~~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) |.+ .|-...+-++.-|+..| -|=|.-.-++++.-+-+.++ T Consensus 54 v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~~~~ 102 (568) T PRK08327 54 IIC-PHEIVAIAMAIGYALGTGKPQAVMVHVNVGTANAAGGIINAFRSRI 102 (568) T ss_pred EEC-CCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 804-9689999999999998599889997458689989999999997199 No 46 >PRK10923 glnG nitrogen regulation protein NR(I); Provisional Probab=54.10 E-value=14 Score=16.13 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=27.6 Q ss_pred HHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99873310266237743058999998761864899999999998615786478999999999999998 Q gi|254780512|r 257 IISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFY 324 (692) Q Consensus 257 liS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~ 324 (692) +-.-.-.++++=+.-.+--|-++.+++-.+.... -.=++.|........-|.-.|+..|. T Consensus 43 l~~~~~dlvl~Di~mP~~~Gl~ll~~lr~~~~~~--------pvIviT~~~~~~~av~A~~~GA~dyL 102 (469) T PRK10923 43 LASKTPDVLLSDIRMPGMDGLALLKQIKQRHPML--------PVIIMTAHSDLDAAVSAYQQGAFDYL 102 (469) T ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC--------CEEEEECCCCHHHHHHHHHCCHHHHC T ss_conf 8669999998789999989999999998429899--------78999899998999999855704430 No 47 >COG4838 Uncharacterized protein conserved in bacteria [Function unknown] Probab=53.81 E-value=14 Score=16.10 Aligned_cols=32 Identities=38% Similarity=0.498 Sum_probs=22.9 Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 76034547878764899989999999999865 Q gi|254780512|r 158 IPGKQMAIDADLSSGLIEEEEAKRRRKELEEE 189 (692) Q Consensus 158 mPGKQMaIDaDl~aG~I~~~eA~~rR~~l~~E 189 (692) |=|-|--||--.|-|+||+++.|+--..+++| T Consensus 50 MfGLsrEidFAvrLgLid~e~GKqll~~LEke 81 (92) T COG4838 50 MFGLSREIDFAVRLGLIDEEDGKQLLSTLEKE 81 (92) T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 85025555388886366788879999999999 No 48 >TIGR02535 hyp_Hser_kinase proposed homoserine kinase; InterPro: IPR013371 The genes encoding proteins in this entry are largely adjacent to genes involved in the biosynthesis of threonine (aspartate kinase, homoserine dehydrogenase and threonine synthase) in genomes which are lacking any other known homoserine kinase, and in which the presence of a homoserine kinase would indicate a complete pathway for the biosynthesis of threonine. These proteins are homologous to the archaeal form of 2,3-bisphosphoglycerate-independent phosphoglycerate mutase and form part of a superfamily of metalloenzymes including phosphopentomutases, alkaline phosphatases and sulphatases. The proposal that these proteins encode a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate, resulting in kinase activity.; GO: 0004619 phosphoglycerate mutase activity. Probab=51.53 E-value=11 Score=17.10 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=11.0 Q ss_pred CHHHHHHHHHHHHHHHHC Q ss_conf 268899999999999809 Q gi|254780512|r 378 DLFLRVSKIRRKFAVQYG 395 (692) Q Consensus 378 ~L~~rI~~iRk~la~elG 395 (692) +-..-|..++|++..|=| T Consensus 122 EA~~Lie~L~~~l~~e~G 139 (431) T TIGR02535 122 EAAELIEALNKELSNEGG 139 (431) T ss_pred HHHHHHHHHHHHHCCCCC T ss_conf 899999999997255789 No 49 >COG2733 Predicted membrane protein [Function unknown] Probab=51.32 E-value=16 Score=15.82 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=38.4 Q ss_pred HHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 6664899998631159-------989999999999974986546999999998753357998999999999 Q gi|254780512|r 513 DPEYQKLAEETCSSHI-------SYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRI 576 (692) Q Consensus 513 ~~~~P~LV~Elvp~~v-------~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~ 576 (692) +.+|.+++++++.... +...+.++.+++++|.-|.-+.+.+-+.+.+.. ....+..+++.||+ T Consensus 178 d~r~q~l~D~l~~~L~r~~~~~~~~~~i~~~I~r~~e~e~p~~a~~~~~~~v~~~~-I~~a~~~~lD~v~~ 247 (415) T COG2733 178 DDRHQALLDKLIDRLIRWLLNDKVREFIAAVIVRYLEEEHPLFAPIIIVSLVGKRD-ISDAVNSFLDEVRR 247 (415) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHH T ss_conf 42277899999999999864225789999999999986077520477699981125-98879999999875 No 50 >pfam08559 Cut8 Cut8. In Schizosaccharomyces pombe, Cut8 is a nuclear envelope protein that physically interacts with and tethers 26S proteasome in the nucleus resulting in the nuclear accumulation of proteasome. Cut8 is a proteasome substrate and amino terminal residues 1-72 are polyubiquitinated and function as a degron tag. Ubiquitination of the amino terminal is essential to the function of Cut8. Lysine residues in the amino terminal 72 amino acids of Cut8 are required for physical interaction with proteasome. In fission yeast the function of Cut8 has been demonstrated to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and ligating enzymes Ubr1. Cut8 homologs have been identified in Drosophila melanogaster, Anopheles gambiae and Dictyostelium discoideum. Probab=50.86 E-value=16 Score=15.77 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHH Q ss_conf 79998729999999999766648999986311599---899999999999 Q gi|254780512|r 495 NLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHIS---YSGIQAVLKLLL 541 (692) Q Consensus 495 ~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~---l~~i~~VLq~LL 541 (692) ..=|.+..+.-+.+|..+=++||++-+|++ +..| +....+||+... T Consensus 51 RlLE~Ldk~qL~~lL~~l~~~HPel~~ei~-~~~P~Psv~~~~~~L~~~~ 99 (227) T pfam08559 51 RLLETLDKEQLQSLLTSLCERHPELGQEIR-NILPRPSIASALEVLRDKQ 99 (227) T ss_pred HHHHHCCHHHHHHHHHHHHHHCCHHHHHHH-HCCCCCCHHHHHHHHHHHH T ss_conf 889870899999999999997907888987-3389998999999999999 No 51 >PRK06154 hypothetical protein; Provisional Probab=50.67 E-value=16 Score=15.75 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=23.0 Q ss_pred HHCCCCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH Q ss_conf 9739988999999899986-----------457888515899987331 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLSV-----------GDGLVSQVPALIISLSAA 263 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LTI-----------GDGLVsQIPaLliS~aaG 263 (692) ..|--..+-++.-|+..|= |=|.-.-+.++.-+-+.+ T Consensus 52 ~rhE~~A~~mAdgyaR~tg~r~~gv~~~t~GPG~~N~~tgla~A~~d~ 99 (556) T PRK06154 52 ARTERVVVGMADGYARATLGRRVGVCAVQYGPGAENAFGGMAQAFSDS 99 (556) T ss_pred ECCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 597899999999999986999888999725547999999999999829 No 52 >pfam04278 Tic22 Tic22-like family. The preprotein translocation at the inner envelope membrane of chloroplasts so far involves five proteins: Tic110, Tic55, Tic40, Tic22 (this family) and Tic20. The molecular function of these proteins has not yet been established. Probab=50.06 E-value=12 Score=16.80 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=83.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHH------HHHHHHHHHHHHHCCCCC--- Q ss_conf 987299999999997666489999863115998999999999997--498654------699999999875335799--- Q gi|254780512|r 498 QLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLA--EHVSIR------NLPLILESIAEVAPHSRK--- 566 (692) Q Consensus 498 ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~--E~VsIR------dlr~IlEaLad~a~~~kD--- 566 (692) =+++++|.+..++.+++++|++-+..-=..+|++.+-+..|.--. |++-.| .+..-.+-+-+.+...++ T Consensus 88 vf~sq~dA~afL~~lk~~~pe~~~~~kV~pvsLg~vY~l~~~~~~k~~~l~f~fvP~~~qv~~A~~ll~~~gq~~~~F~G 167 (259) T pfam04278 88 LFLSQEDAEAFLNELKKQNPELASGAKVVPISLGQVYKLAQSNQKKVEGVAFRFVPDPKQVKNALELLKKNGQNVDGFRG 167 (259) T ss_pred EEECHHHHHHHHHHHHHHCHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99669999999999875194340575599967899999888751687560699638989999999999970987778988 Q ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf -8999999999989998652077884899988878999999983037778846456698899999999999999999569 Q gi|254780512|r 567 -TSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKG 645 (692) Q Consensus 567 -~~~LtE~VR~aL~R~I~~~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g 645 (692) |.-. .|.. ..+++-+-.++..+|++-=--+++..+...-++.+. -.....++--.++.++..+.+.- +.+ T Consensus 168 VPlF~---~~~g-~~~Lti~~~n~~~iP~FF~Kedlq~~l~~~k~qqp~-l~~~~~I~V~~Le~vi~~m~~~~----d~~ 238 (259) T pfam04278 168 VPVFQ---SRSG-EGYLTIQKDNKQYIPVFFSKEDLQRMLDRAKRQQPD-LAVSVKIEVGSLEDVLKKMLTSD----DSG 238 (259) T ss_pred CCEEE---ECCC-CCEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHCCC-CCCCCEEEEEEHHHHHHHHHCCC----CCC T ss_conf 55688---7388-624889529917975686379999999997775757-67885499974999999986556----524 Q ss_pred -CCEEEEECHHHHHHHHHH Q ss_conf -987998283354899999 Q gi|254780512|r 646 -IPLTIVTLPEIRSYIRMI 663 (692) Q Consensus 646 -~~pVLl~s~~iRr~lr~l 663 (692) .+.+++-|.+-+-|+|.+ T Consensus 239 ~~~ivfiPs~es~e~i~~l 257 (259) T pfam04278 239 WDKIIFIPPGKSLEFVQSL 257 (259) T ss_pred CCEEEEECCHHHHHHHHHC T ss_conf 0428998998999999860 No 53 >TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV; InterPro: IPR014210 This entry represents subunit 4 (CyoD) of cytochrome o terminal oxidase complex, which is a component of the aerobic respiratory chain that reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilise cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.. Probab=49.81 E-value=16 Score=15.66 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=22.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3269999999999999998864575 Q gi|254780512|r 119 GDFVIGLVVFMILITINFIVITKGA 143 (692) Q Consensus 119 gn~vvG~viF~Il~ivqfiVItkGa 143 (692) ++|.+|+|.=+|||++=|..+..|+ T Consensus 5 ksYliGFvlsv~LT~~pF~~Vm~~~ 29 (99) T TIGR02847 5 KSYLIGFVLSVILTVIPFGLVMSGT 29 (99) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 6179999999999998889998075 No 54 >KOG4715 consensus Probab=49.26 E-value=17 Score=15.60 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=62.4 Q ss_pred HCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH Q ss_conf 289907058899999999999987999872999-9999999766648999986311599899999999999749865469 Q gi|254780512|r 472 RQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKD-VKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNL 550 (692) Q Consensus 472 ~~G~tvvdp~~ViatHl~evir~~a~ellg~qE-vq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdl 550 (692) ..+-.|-|.-+|+.||-.++++|.+..|...|- .-.-|-.++++|.+--.-.+ =+-..++.-|++|..+.| --|+ T Consensus 206 ~SesvVpDvrsVVtt~RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~---estdsf~~eLKr~c~~kv-evd~ 281 (410) T KOG4715 206 LSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFL---ESTDSFNNELKRLCGLKV-EVDM 281 (410) T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHCCCCC-CCCH T ss_conf 132224640332147789999998899888999899999899998899988887---510888999998658741-0019 Q ss_pred HHHHHHHHHHHCCC Q ss_conf 99999998753357 Q gi|254780512|r 551 PLILESIAEVAPHS 564 (692) Q Consensus 551 r~IlEaLad~a~~~ 564 (692) ..+.+.+++|-.+. T Consensus 282 eK~~~~i~q~eeq~ 295 (410) T KOG4715 282 EKMAAEIAQAEEQA 295 (410) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 55 >PRK08979 acetolactate synthase 3 catalytic subunit; Validated Probab=48.99 E-value=17 Score=15.57 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=27.9 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-++.-|+..| -|=|+-.-++++.-+-+.++ T Consensus 48 ~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~N~~~gl~~A~~d~~ 94 (572) T PRK08979 48 VRHEQAAVHMADGYARATGKVGVVLVTSGPGATNAITGIATAYMDSI 94 (572) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 18689999999999999799889998267379999999999998599 No 56 >PRK08322 acetolactate synthase; Reviewed Probab=48.71 E-value=17 Score=15.54 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=19.2 Q ss_pred HCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH Q ss_conf 73998899999989998---------6457888515899987331 Q gi|254780512|r 228 RYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAA 263 (692) Q Consensus 228 q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaG 263 (692) .|-...+-++.-|+..| .|=|...-++++.-+-+.+ T Consensus 45 ~hE~~A~~~AdGyar~tgk~gv~~~t~GpG~~N~~~~v~~A~~~~ 89 (547) T PRK08322 45 RHEQGAGFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQLGG 89 (547) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 878999999999999979988999797806999999999998529 No 57 >COG1297 Predicted membrane protein [Function unknown] Probab=48.22 E-value=17 Score=15.48 Aligned_cols=104 Identities=17% Similarity=0.289 Sum_probs=59.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC-CCCHHHHHHHHHHCCCH-HH Q ss_conf 99999888999999973998899999989998645788851589998733102662377-43058999998761864-89 Q gi|254780512|r 213 ITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPALIISLSAAFLVSRTTS-KGSTNTAIVEQLSHYPR-AL 290 (692) Q Consensus 213 I~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQIPaLliS~aaGiiVTRvss-~~~lg~~i~~Ql~~~p~-aL 290 (692) +|+-|.+-|++|++. --|.+.|-=|++|=---+-|||-+||+|---..--.+- |+|+-.....--..-+. +. T Consensus 15 lTlr~vIlGilitvi------~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~~~silENNmVQT~ASAagtlsa~vI 88 (624) T COG1297 15 LTLRGVILGILITVI------FLAANVYLGLKVGLTFASSIPAAVISMAVLKAFKGSSILENNMVQTQASAAGTLSAGVI 88 (624) T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHEECCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEE T ss_conf 019999999999999------99888761021442503314999999999998276635566789989866414433278 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999999861578647899999999999999 Q gi|254780512|r 291 LISAFFMIVLSVMPNLPAFPFIMLGGFFACAGF 323 (692) Q Consensus 291 ~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~ 323 (692) ++--+++. ++-=-+||.++-+..+++.+.++- T Consensus 89 FviPgl~m-~g~w~~fpf~~t~~i~~lggiLGv 120 (624) T COG1297 89 FVLPGLLM-LGYWSGFPFWQTAIICALGGILGV 120 (624) T ss_pred EECHHHHH-HCCCCCCCHHHHHHHHHHHHHCCE T ss_conf 82012776-444258837999999998745004 No 58 >pfam04550 Phage_holin_2 Phage holin family 2. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the buildup of a holin oligomer which causes the lysis. Probab=48.21 E-value=17 Score=15.48 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=29.6 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9998761864899999999998615786478999999999999998 Q gi|254780512|r 279 IVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFY 324 (692) Q Consensus 279 i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~ 324 (692) +++-+.+ .++-++|+..+. .+|++|.+....++++++.++|- T Consensus 36 iGR~iLG--s~~S~~Ag~~Lv--~~Pdl~plAv~GigsalGIaG~q 77 (90) T pfam04550 36 VGRMILG--SAVSMVAGVALI--QFPDIHPLALCGIGSALGIAGSQ 77 (90) T ss_pred HHHHHHH--HHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8899995--498998878987--08999899999899998552699 No 59 >pfam05529 Bap31 B-cell receptor-associated protein 31-like. Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31. Probab=48.11 E-value=17 Score=15.47 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=52.2 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999603847899999999999999999999513770454200489999999998554888889884377776326 Q gi|254780512|r 26 IVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAA 105 (692) Q Consensus 26 ~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL~~g~~g~~~A 105 (692) =+++++++++|+|...---+ .-+.......-+.+...-+..+==++|+.--.|=...+++.-.--.+++.+++.. T Consensus 15 Em~~~~lL~lP~~~~~R~~i-----f~~~~~~~~~~~~~~~~~~~~~~l~llfiDsv~~~~k~~~~~~~~~~~~~~~~~~ 89 (192) T pfam05529 15 EMAVFLLLVLPLPSPIRRKI-----FKSVSKLQLSQQFQTGFKILLIFLLVLFIDSVRRVYKYSGELQGSKNASLGGGER 89 (192) T ss_pred HHHHHHHHHHCCCHHHHHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 99999999934875899999-----9999999885155036889999999999999999999998751002356777510 Q ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH Q ss_conf 789998751450132-699999999999999988 Q gi|254780512|r 106 GGIIAGFSSLVMSGD-FVIGLVVFMILITINFIV 138 (692) Q Consensus 106 G~vI~aFG~fVvggn-~vvG~viF~Il~ivqfiV 138 (692) -..-.-.-.|-...| |.-|+..|+-++|--.+- T Consensus 90 ~~~~~~~r~F~aQRN~Yl~GF~LfL~lvi~R~~~ 123 (192) T pfam05529 90 SEYQTLARLFYAQRNLYLSGFTLFLTLVIRRVVT 123 (192) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7789999999999879999999999999999999 No 60 >pfam09851 DUF2078 Predicted membrane protein (DUF2078). This domain, found in various hypothetical prokaryotic proteins, has no known function. Probab=48.04 E-value=17 Score=15.46 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=24.8 Q ss_pred HHHCCCCHHHHHH---HHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 4420376034547---87876489998999999999986 Q gi|254780512|r 153 FTLDAIPGKQMAI---DADLSSGLIEEEEAKRRRKELEE 188 (692) Q Consensus 153 FtLDamPGKQMaI---DaDl~aG~I~~~eA~~rR~~l~~ 188 (692) ..-+..|.+.-|. |--+..|-||++|=++||++|++ T Consensus 35 ~~~~~~~~~~~al~IL~eRyArGEI~eeEy~~rk~~L~~ 73 (73) T pfam09851 35 RGRSDSPPDSDALEILKERYARGEIDEEEYEERKKDLRE 73 (73) T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC T ss_conf 988999887689999999986589899999999988639 No 61 >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Probab=47.50 E-value=18 Score=15.41 Aligned_cols=59 Identities=25% Similarity=0.290 Sum_probs=34.6 Q ss_pred CHHHHHHHHHHHHH--HHHH-HHHHHHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 10589999999998--8899-9999973998899999989998---------64578885158999873310 Q gi|254780512|r 205 GDAIASIIITAINI--VGGI-VIGCFRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 205 GDAiAgiiI~~iNi--igG~-~iG~~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ||.+-.++=.+.+. -+++ .|. ..|-...+-|+.-|+..| -|=|..+-+.++.-+-+.++ T Consensus 42 G~~~lpl~dal~~~~~~~~i~~I~-~rhE~~A~~aAdGYAR~tGk~gv~~~T~GPG~~N~~tgia~A~~d~v 112 (615) T PRK07418 42 GGAILPIYDALYKAEAEGWLKHIL-VRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMDSV 112 (615) T ss_pred CCCHHHHHHHHHHCCCCCCCEEEC-CCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 975379999998455468961862-29789999999999999799989996456079999999999998499 No 62 >pfam06120 Phage_HK97_TLTM Tail length tape measure protein. This family consists of the tail length tape measure protein from bacteriophage HK97 and related sequences from Escherichia coli O157:H7. Probab=47.40 E-value=18 Score=15.40 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999879998729999999999766648999986 Q gi|254780512|r 485 LTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEET 523 (692) Q Consensus 485 atHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~El 523 (692) .+.+..-=.|.-..+=..+++|..+..++...-.+..+. T Consensus 143 ~~~L~ve~~rl~qm~~k~~~iq~~l~~le~~~~~li~k~ 181 (311) T pfam06120 143 ADALAVEEERLEQMLAKRKEIQQLIEDIEDQAIDLIRNK 181 (311) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999998799999999988999999987777788999999 No 63 >COG3462 Predicted membrane protein [Function unknown] Probab=46.96 E-value=15 Score=15.98 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.1 Q ss_pred HHHCCCCCHHHHHHHHHHHHH Q ss_conf 876489998999999999986 Q gi|254780512|r 168 DLSSGLIEEEEAKRRRKELEE 188 (692) Q Consensus 168 Dl~aG~I~~~eA~~rR~~l~~ 188 (692) -+..|-|||||=++++++++| T Consensus 97 R~AkGEItEEEY~r~~~~irr 117 (117) T COG3462 97 RYAKGEITEEEYRRIIRTIRR 117 (117) T ss_pred HHHCCCCCHHHHHHHHHHHCC T ss_conf 973478889999999998509 No 64 >PRK06466 acetolactate synthase 3 catalytic subunit; Validated Probab=46.91 E-value=18 Score=15.34 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=24.3 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|--..+-++.-|+..| -|=|.-.-++++.-+-+.++ T Consensus 48 ~rhE~~A~~mAdgyaR~tgk~gv~~~t~GPG~~N~~~gi~~A~~d~~ 94 (574) T PRK06466 48 VRHEQAATHMADGYARATGKAGVVLVTSGPGATNAITGIATAYMDSI 94 (574) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 48789999999999999799879998257059999999999998499 No 65 >TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component; InterPro: IPR011299 This entry represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport . Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name 'PTS system, glucose-specific IIABC component' while the Bacillus subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains . This group is most closely related to the N-acetylglucosamine-specific PTS enzymes (IPR010974 from INTERPRO).; GO: 0005355 glucose transmembrane transporter activity, 0015758 glucose transport, 0016021 integral to membrane. Probab=46.33 E-value=14 Score=16.21 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=26.5 Q ss_pred HHHHHCCC--CHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99861578--6478999999999999998864 Q gi|254780512|r 298 IVLSVMPN--LPAFPFIMLGGFFACAGFYVPY 327 (692) Q Consensus 298 ~~lglvPG--mP~~~Fl~la~~l~~~a~~~~r 327 (692) +.+|+.|+ -|.|-|.+++...+...|.+-| T Consensus 382 L~~G~ls~dr~~~W~~IIvG~~~A~iYYflFR 413 (518) T TIGR02002 382 LLYGVLSGDREAAWLVIIVGLVYAIIYYFLFR 413 (518) T ss_pred HHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH T ss_conf 86178832026412020378999999998999 No 66 >PRK07525 sulfoacetaldehyde acetyltransferase; Validated Probab=45.88 E-value=19 Score=15.23 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=25.4 Q ss_pred HHCCCCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH Q ss_conf 9739988999999899986---------4578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLSV---------GDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LTI---------GDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-|+.-|+..|= |=|+-.-+.++.-+.+.++ T Consensus 49 ~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~tgl~~A~~d~~ 95 (589) T PRK07525 49 VAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVATAYWAHT 95 (589) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCC T ss_conf 09789999999999999799889999676079999999999997399 No 67 >TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase; InterPro: IPR006370 These sequences are a family of integral membrane proteins that condense para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in Escherichia coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterised members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterised members IPR006371 from INTERPRO .; GO: 0004659 prenyltransferase activity, 0009058 biosynthetic process, 0016021 integral to membrane. Probab=45.85 E-value=18 Score=15.29 Aligned_cols=75 Identities=11% Similarity=0.194 Sum_probs=48.7 Q ss_pred HHHHHHHHHHHHEEEECCC-------CCCHHHHHH---------HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH-HHHH Q ss_conf 1589998733102662377-------430589999---------9876186489999999999861578647899-9999 Q gi|254780512|r 253 VPALIISLSAAFLVSRTTS-------KGSTNTAIV---------EQLSHYPRALLISAFFMIVLSVMPNLPAFPF-IMLG 315 (692) Q Consensus 253 IPaLliS~aaGiiVTRvss-------~~~lg~~i~---------~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~F-l~la 315 (692) -+.+|.-...|.+.+|++. |.+++.++- ++++.+---++.+...+..+|++==|+++.+ +.++ T Consensus 41 ~~~~L~~F~~G~~lMRgAGCviND~~DR~~D~~VeRTk~RPLasG~vs~~~A~~~~~~~~l~~l~~Ll~LN~~ti~Lgv~ 120 (291) T TIGR01474 41 PLLLLALFTVGAILMRGAGCVINDIVDRDFDKQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNSLTILLGVA 120 (291) T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 08999999999999864043433046240043340000378746631189999999999999999998755799999899 Q ss_pred HHHHHHHH-HHHH Q ss_conf 99999999-8864 Q gi|254780512|r 316 GFFACAGF-YVPY 327 (692) Q Consensus 316 ~~l~~~a~-~~~r 327 (692) ++.....| ++|| T Consensus 121 sL~lv~~YP~~KR 133 (291) T TIGR01474 121 SLALVAIYPFMKR 133 (291) T ss_pred HHHHHHHHCCHHH T ss_conf 9999998011320 No 68 >PRK09390 fixJ response regulator FixJ; Provisional Probab=45.40 E-value=14 Score=16.30 Aligned_cols=20 Identities=5% Similarity=0.155 Sum_probs=9.4 Q ss_pred HHCCCCCHHHHHHHHHHHHH Q ss_conf 53357998999999999989 Q gi|254780512|r 560 VAPHSRKTSHIVEQVRIRMA 579 (692) Q Consensus 560 ~a~~~kD~~~LtE~VR~aL~ 579 (692) |-.+.-+++.|.+.+|.++. T Consensus 101 yl~K~~~~~~L~~aI~~~l~ 120 (202) T PRK09390 101 FIEKPFEDERLIGAIERALA 120 (202) T ss_pred HCCCCCCHHHHHHHHHHHHH T ss_conf 45599999999999999997 No 69 >PRK07710 acetolactate synthase catalytic subunit; Reviewed Probab=45.19 E-value=19 Score=15.16 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=51.1 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHH------- Q ss_conf 99989999999999865222201220134530105899999999988899-9999973998899999989998------- Q gi|254780512|r 173 LIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGI-VIGCFRYDMSIHHAADVFVRLS------- 244 (692) Q Consensus 173 ~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~-~iG~~q~gm~~~eA~~~Yt~LT------- 244 (692) ++|-.|+=.++-+-+-=...|| +-|+.+..++=.+.+ .|+ .|+ ..|-...+-|+.-|+.+| T Consensus 15 ~~tGa~~l~~~L~~~GV~~vFG--------vpG~~~~~l~dal~~--~~i~~V~-~rhE~~A~~mAdgYaR~tg~pgv~~ 83 (571) T PRK07710 15 LATGAQLLLEALEKEGVEVIFG--------YPGGAVLPLYDALYD--CGIPHIL-TRHEQGAIHAAEGYARITGNPGVVI 83 (571) T ss_pred CCCHHHHHHHHHHHCCCCEEEE--------CCCCCHHHHHHHHHH--CCCCEEE-ECCHHHHHHHHHHHHHHHCCCEEEE T ss_conf 4749999999999879999998--------477148999999986--6993993-3878999999999999979988999 Q ss_pred --HHHHHHHHHHHHHHHHHHHH Q ss_conf --64578885158999873310 Q gi|254780512|r 245 --VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 245 --IGDGLVsQIPaLliS~aaGi 264 (692) -|=|+-.-++++.-+-+.++ T Consensus 84 ~t~GpG~~N~~~gl~~A~~~~~ 105 (571) T PRK07710 84 ATSGPGATNVITGLADAMIDSL 105 (571) T ss_pred EECCHHHHHHHHHHHHHHHHCC T ss_conf 8167289999999999998399 No 70 >PRK10046 dpiA two-component response regulator DpiA; Provisional Probab=45.01 E-value=19 Score=15.14 Aligned_cols=67 Identities=7% Similarity=0.026 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--------HHHHHHHHHHH----HHHHCCCCCHHHHHHH Q ss_conf 99999976664899998631159989999999999974986--------54699999999----8753357998999999 Q gi|254780512|r 506 KNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVS--------IRNLPLILESI----AEVAPHSRKTSHIVEQ 573 (692) Q Consensus 506 q~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~Vs--------IRdlr~IlEaL----ad~a~~~kD~~~LtE~ 573 (692) ++-++.+++..|+|| ++.-.+|-+.=-++|+.|-+++.+ -.|..++.|++ .||--|-=+.+.|.+. T Consensus 40 ~eA~~~l~~~~pDLv--LLDi~LPd~~Glell~~lr~~~~~~~VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~ 117 (225) T PRK10046 40 AQARMMIERFKPGLI--LLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 (225) T ss_pred HHHHHHHHHCCCCEE--EEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHH T ss_conf 999999973599999--982898999799999999964879988999689999999999974998310289999999999 Q ss_pred H Q ss_conf 9 Q gi|254780512|r 574 V 574 (692) Q Consensus 574 V 574 (692) . T Consensus 118 L 118 (225) T PRK10046 118 L 118 (225) T ss_pred H T ss_conf 9 No 71 >COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Probab=44.19 E-value=20 Score=15.05 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=60.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 35799899999999998999865207788489998887899999998303777884645669889999999999999999 Q gi|254780512|r 562 PHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQY 641 (692) Q Consensus 562 ~~~kD~~~LtE~VR~aL~R~I~~~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~ 641 (692) ...+|+...++.-|.++...+.+....++.++-++- ..++..++.+.|.++ .-..+.+.|..+..++........ T Consensus 306 ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~-~Av~~li~~a~R~Ag--~~~~Ltl~~rdl~~lv~~A~~ia~-- 380 (647) T COG1067 306 AEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDK-DAVEELIREAARRAG--DQNKLTLRLRDLGNLVREAGDIAV-- 380 (647) T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHCC--CCCEECCCHHHHHHHHHHHHHHHH-- T ss_conf 997688899868999999999999986289998888-999999999998616--565021489999999998668885-- Q ss_pred HHCCCCEEEEECHHHHHHHHH Q ss_conf 956998799828335489999 Q gi|254780512|r 642 IDKGIPLTIVTLPEIRSYIRM 662 (692) Q Consensus 642 ~~~g~~pVLl~s~~iRr~lr~ 662 (692) ..| --++++-+++..+++ T Consensus 381 -~~~--~~~I~ae~Ve~a~~~ 398 (647) T COG1067 381 -SEG--RKLITAEDVEEALQK 398 (647) T ss_pred -CCC--CCCCCHHHHHHHHHH T ss_conf -378--664769999999987 No 72 >pfam03530 SK_channel Calcium-activated SK potassium channel. Probab=43.30 E-value=20 Score=14.96 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 000100134589999999999996 Q gi|254780512|r 11 SNDRNHLHDFAFSFCIVLIICILF 34 (692) Q Consensus 11 ~~~~~~~~d~~~~~~~~~ii~~~i 34 (692) +..+.+.+|.++.+++.+|+.|++ T Consensus 9 ~e~r~rl~D~aL~~Av~GIilMvi 32 (120) T pfam03530 9 FEKRKRLSDYALAFAVFGIILMVI 32 (120) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999888999999999976876442 No 73 >pfam02341 RcbX RbcX protein. The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity. Probab=43.24 E-value=20 Score=14.95 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=40.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCC Q ss_conf 999999987999872999999999976664899998631159---9899999999999749 Q gi|254780512|r 487 HLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHI---SYSGIQAVLKLLLAEH 544 (692) Q Consensus 487 Hl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v---~l~~i~~VLq~LL~E~ 544 (692) ++..-..++....|++|.++..++.|.+.+|...-.+- .-. +++.=-.-|+.|++|+ T Consensus 4 ~iakdtak~L~sYlTYqAvrtVl~QL~EtNP~~~~WL~-~Fsa~~~iqDGe~fl~~L~~E~ 63 (108) T pfam02341 4 QIAKDTAKVLQSYLTYQAVRTVLDQLSETNPPLAIWLH-QFSASGKIQDGEAYLEELLLEN 63 (108) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHC T ss_conf 88899999999999999999999998625868877999-8851389856899999998669 No 74 >PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed Probab=43.20 E-value=20 Score=14.95 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=5.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999886443 Q gi|254780512|r 317 FFACAGFYVPYKN 329 (692) Q Consensus 317 ~l~~~a~~~~r~~ 329 (692) +.++.+||+.++. T Consensus 28 ~g~g~~~~~~~~~ 40 (159) T PRK07021 28 AGAGYSYWLSKQG 40 (159) T ss_pred HHHHHHHHHCCCC T ss_conf 9999999954776 No 75 >pfam06570 DUF1129 Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function. Probab=42.99 E-value=21 Score=14.92 Aligned_cols=28 Identities=25% Similarity=0.615 Sum_probs=23.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7864789999999999999988644322 Q gi|254780512|r 304 PNLPAFPFIMLGGFFACAGFYVPYKNEL 331 (692) Q Consensus 304 PGmP~~~Fl~la~~l~~~a~~~~r~~~~ 331 (692) |-+|.++-+++|++..++-|+.+||-+. T Consensus 176 P~Lp~~v~iiigaia~~~r~~lkkky~I 203 (206) T pfam06570 176 PVLPPWVYIIIGAIAFGVRYYLKKKYNI 203 (206) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8986699999999999999999997277 No 76 >PRK07789 acetolactate synthase 1 catalytic subunit; Validated Probab=42.81 E-value=21 Score=14.90 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=66.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCC-EEEEE---ECCEEEEEEEE-CCCCEEEECCCCCCCCCCCCEEECC Q ss_conf 8899999999999809878832445-43778987-16999---74824534884-1783413305888767887410147 Q gi|254780512|r 380 FLRVSKIRRKFAVQYGFIVPEIKVT-TDISLPEK-GYTIR---VYGTTVAISEL-RVGEVLVILGSGQKPTFPGDEVKEP 453 (692) Q Consensus 380 ~~rI~~iRk~la~elG~~iP~IrIr-Dn~~L~~~-~Y~I~---I~Gv~va~gei-~~~~lLai~~~~~~~~l~G~~~~eP 453 (692) ..+....-+++++.+|+++ +.-. -.--++.+ .+.+= ..|.+.+...+ ..|-++++...-. ....|.. + T Consensus 244 ~~~a~~~l~~Lae~l~iPV--~tt~~gkg~~pe~hpl~~G~~G~~g~~~a~~~l~~aDlvL~iG~rl~-~~~tg~~---~ 317 (612) T PRK07789 244 RAEASEELRELAELTGIPV--VTTLMARGAFPDSHPQNLGMPGMHGTVAAVAALQRSDLLIALGARFD-DRVTGKL---D 317 (612) T ss_pred HHHHHHHHHHHHHHCCCCE--EEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCC-CCCCCCC---C T ss_conf 4658999999999619978--98305768899888010477777788899976505886888625567-5556873---4 Q ss_pred CCCCCEEE--CCHHHHHH--HHHCCCEEECHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 66883034--39788458--882899070588999999999999879998--7299999999997666489999863115 Q gi|254780512|r 454 AFGMPAFA--IMESFSDD--LRRQGFHPIDNLAVVLTHLSEVIRNNLSQL--LSYKDVKNLISRLDPEYQKLAEETCSSH 527 (692) Q Consensus 454 ~fgl~A~W--I~~~~~~~--a~~~G~tvvdp~~ViatHl~evir~~a~el--lg~qEvq~LLd~L~~~~P~LV~Elvp~~ 527 (692) .|.-++.+ |+.+..+- -....+.++-........|.+.++++...- -.+++-.+-++.+++++|.-.++--... T Consensus 318 ~~~p~~kvI~Id~D~~eig~~~~~dl~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~r~~~~~~~~~~~~~~ 397 (612) T PRK07789 318 SFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIEALRAEQAPGGTPDLTAWWAYLDGLRETYPLGYDEPSDGS 397 (612) T ss_pred CCCCCCEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 35998738997299899676657884684289999999999876402566523269999999999985500136887787 Q ss_pred CCHHHHHHHHHHHHHCC Q ss_conf 99899999999999749 Q gi|254780512|r 528 ISYSGIQAVLKLLLAEH 544 (692) Q Consensus 528 v~l~~i~~VLq~LL~E~ 544 (692) +....+.+.|+.++.+. T Consensus 398 i~p~~v~~~l~~~l~~d 414 (612) T PRK07789 398 LAPQYVIERLGEIAGPD 414 (612) T ss_pred CCHHHHHHHHHHHCCCC T ss_conf 39999999999866999 No 77 >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. Probab=42.27 E-value=21 Score=14.85 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=25.3 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-++.-|+..| -|=|+-.-++++.-+-+.++ T Consensus 45 ~rhE~~A~~mAdgyar~tGk~gv~~~t~GpG~~N~~~gi~~A~~~~~ 91 (579) T TIGR03457 45 VVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAAAYWAHT 91 (579) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCC T ss_conf 19789999999999999699889999656379999999999996499 No 78 >PRK08199 acetolactate synthase 2 catalytic subunit; Validated Probab=42.16 E-value=21 Score=14.83 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=21.5 Q ss_pred HCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 73998899999989998---------64578885158999873310 Q gi|254780512|r 228 RYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 228 q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) .|-...+-|+.-|+..| -|=|+-.-++++.-+-+.++ T Consensus 47 ~hE~~A~~aAdgyar~tg~pgv~~~t~GpG~~N~~~~i~~A~~~~~ 92 (553) T PRK08199 47 RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHTAFQDST 92 (553) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 8789999999999998699889998547459999999999997299 No 79 >TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair. Probab=41.46 E-value=22 Score=14.76 Aligned_cols=63 Identities=10% Similarity=0.180 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 999999999766648999986311599899999999999749865469999999987533579989 Q gi|254780512|r 503 KDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTS 568 (692) Q Consensus 503 qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~ 568 (692) ++.++-++..+...-+..+++ |+.-.+....+=+..|-.. .++|...|..+.-+...--++.. T Consensus 167 e~~~~~~k~~~~~w~~~~~~L-p~~~~l~~y~~rl~~i~~~--~~~~~~~l~~~k~~~d~lk~e~~ 229 (554) T TIGR03545 167 EEIERSLKAMQQKWKKRKDSL-PQKQDLEEYQKRLEAIKEA--DIKNPLELQKAKEEFDKLKKEGK 229 (554) T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999857-6556799999999998743--68999999999999999999999 No 80 >CHL00119 atpD ATP synthase CF1 delta subunit; Validated Probab=40.41 E-value=22 Score=14.65 Aligned_cols=111 Identities=15% Similarity=0.216 Sum_probs=53.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999879998729999999999766----------64899998631159989999999999974986546999999 Q gi|254780512|r 486 THLSEVIRNNLSQLLSYKDVKNLISRLDP----------EYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILE 555 (692) Q Consensus 486 tHl~evir~~a~ellg~qEvq~LLd~L~~----------~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlE 555 (692) +-++.+-|+||.-|+..-.-..-+|.+.. ++|++-+=+-...++...-.+++..++.+.++-- +...+. T Consensus 3 ~~~s~iAkrYA~ALf~~A~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~il~~~~~~~~~~~-~~nfl~ 81 (184) T CHL00119 3 PLVSKIAQPYAEALLEFAVAKNILEQITNDLQLILTILANSPDLKKFLANPLITKEAKKEVLKKTFSKQINEN-TLKFLM 81 (184) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH-HHHHHH T ss_conf 1757889999999999998749899999999999999956899999985867798999999999865304899-999999 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCEE-----EEEEECHHHHHHHHHHHH Q ss_conf 99875335799899999999998999865207-----78848-----999888789999999830 Q gi|254780512|r 556 SIAEVAPHSRKTSHIVEQVRIRMAQQICGDLA-----PTGIL-----NILKLGNHWDMIFYQAIQ 610 (692) Q Consensus 556 aLad~a~~~kD~~~LtE~VR~aL~R~I~~~~~-----~~g~L-----~vi~L~p~lE~~l~~~i~ 610 (692) . |.|+=|..+=+.|+..|. ..|.. .+.-|+.+-.+.+.+.+. T Consensus 82 l-------------l~~~~R~~~l~~I~~~f~~l~~~~~~~~~v~V~sA~~Ls~~q~~~i~~~l~ 133 (184) T CHL00119 82 V-------------LVDRGRISLLDAIIEKYLELVYKLASIKIAEVTTAVPLSSEQKEALIEKLK 133 (184) T ss_pred H-------------HHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHH T ss_conf 9-------------987898435899999999999984896999999820899999999999999 No 81 >TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase. Probab=40.34 E-value=23 Score=14.64 Aligned_cols=24 Identities=13% Similarity=0.384 Sum_probs=14.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5786478999999999999998864 Q gi|254780512|r 303 MPNLPAFPFIMLGGFFACAGFYVPY 327 (692) Q Consensus 303 vPGmP~~~Fl~la~~l~~~a~~~~r 327 (692) +|-||++.+=. ++++|..-++.+| T Consensus 3 iPEFPTvAlPv-~ailGl~f~f~rr 26 (28) T TIGR03024 3 IPEFPTVALPV-AAILGLMFFFQRR 26 (28) T ss_pred CCCCCHHHHHH-HHHHHHHHHHHHC T ss_conf 87675258799-9999999997313 No 82 >pfam11491 DUF3213 Protein of unknown function (DUF3213). The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold. Probab=39.98 E-value=22 Score=14.77 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=4.2 Q ss_pred HHHHHHHHHHH Q ss_conf 76664899998 Q gi|254780512|r 512 LDPEYQKLAEE 522 (692) Q Consensus 512 L~~~~P~LV~E 522 (692) +++-.|++++| T Consensus 57 leelkpev~~e 67 (90) T pfam11491 57 KEELKGEVIEE 67 (90) T ss_pred HHHCCHHHCCC T ss_conf 98648154042 No 83 >COG4877 Uncharacterized protein conserved in bacteria [Function unknown] Probab=39.45 E-value=23 Score=14.61 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=27.1 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCC-H-----HHHHHHHHHH Q ss_conf 498654699999999875335799-8-----9999999999 Q gi|254780512|r 543 EHVSIRNLPLILESIAEVAPHSRK-T-----SHIVEQVRIR 577 (692) Q Consensus 543 E~VsIRdlr~IlEaLad~a~~~kD-~-----~~LtE~VR~a 577 (692) -++|+|=-+.|+.+++.|+.-+-- . .+|+|.+|++ T Consensus 7 kQ~PLRl~paiy~Aia~wA~de~RSiNaQIE~lL~E~lrq~ 47 (63) T COG4877 7 KQFPLRLEPAIYAAIAQWAEDEFRSINAQIEILLKEALRQR 47 (63) T ss_pred CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 86772147899999999977777656689999999999982 No 84 >KOG0776 consensus Probab=39.38 E-value=23 Score=14.53 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=10.3 Q ss_pred HHHHHHHH-HHHHHHHHHHH Q ss_conf 99999999-99899986520 Q gi|254780512|r 568 SHIVEQVR-IRMAQQICGDL 586 (692) Q Consensus 568 ~~LtE~VR-~aL~R~I~~~~ 586 (692) +.+-+|-| .+|.-|++... T Consensus 264 e~~~~yGR~lGL~fQvvDDi 283 (384) T KOG0776 264 EAAFEYGRCLGLAFQVVDDI 283 (384) T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 99999988889899986214 No 85 >PRK10643 DNA-binding transcriptional regulator BasR; Provisional Probab=39.30 E-value=12 Score=16.77 Aligned_cols=103 Identities=7% Similarity=0.042 Sum_probs=59.4 Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCH------H Q ss_conf 70588999999999999879998729999999999766648999986311599899999999999749--865------4 Q gi|254780512|r 477 PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEH--VSI------R 548 (692) Q Consensus 477 vvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~--VsI------R 548 (692) +||....+...+.+.+.++..+-.+....+.-++.+++..|.+| ++.-.+|-..=.++++++-++. +|| . T Consensus 5 lVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~Dlv--ilDi~lp~~~G~~l~~~ir~~~~~~pII~lt~~~ 82 (222) T PRK10643 5 IVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLV--VLDLGLPDEDGLHFLARIRQKKYTLPVLILTARD 82 (222) T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEE--EEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCC T ss_conf 99288999999999999789999998999999999974899899--9968889986226899998348998899982103 Q ss_pred HHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 6999999998----75335799899999999998999 Q gi|254780512|r 549 NLPLILESIA----EVAPHSRKTSHIVEQVRIRMAQQ 581 (692) Q Consensus 549 dlr~IlEaLa----d~a~~~kD~~~LtE~VR~aL~R~ 581 (692) +.....+++- |+-.+--++..|...+|..++|+ T Consensus 83 ~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr~ 119 (222) T PRK10643 83 TLEDRIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 (222) T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC T ss_conf 6788999997599776438876899999999997032 No 86 >PRK07586 hypothetical protein; Validated Probab=39.13 E-value=20 Score=15.01 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=14.6 Q ss_pred CCCCHHHHHHHHHHHHHCCC Q ss_conf 15998999999999997498 Q gi|254780512|r 526 SHISYSGIQAVLKLLLAEHV 545 (692) Q Consensus 526 ~~v~l~~i~~VLq~LL~E~V 545 (692) ..++...+.+.+++++.|.- T Consensus 335 ~~l~p~~~~~~l~~~lp~~~ 354 (514) T PRK07586 335 GALTPEAVAQAIAALLPENA 354 (514) T ss_pred CCCCHHHHHHHHHHHCCCCE T ss_conf 99899999999998779986 No 87 >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional Probab=38.84 E-value=24 Score=14.47 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHH Q ss_conf 999999766648999986311599899999999999749865469999999987533579989---99999999989998 Q gi|254780512|r 506 KNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTS---HIVEQVRIRMAQQI 582 (692) Q Consensus 506 q~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~---~LtE~VR~aL~R~I 582 (692) -.++.++-..+|.|-.+.. - .-..-.++++++.+. ....+|-+ ..+|-+ ..=|.||.-++.+. T Consensus 289 L~mvgRlfaQdp~LYadI~-~--~n~~~~~vi~~~~~~------~~~l~~lv-----~~~Dk~~Fi~~F~~v~~~Fgd~~ 354 (374) T PRK11199 289 LAMVGRLFAQDPQLYADII-M--SSEENLALIKRYYQR------FGEALELL-----EQGDKQAFIDSFEKVEHWFGDYA 354 (374) T ss_pred HHHHHHHHCCCHHHHHHHH-H--CCHHHHHHHHHHHHH------HHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999988668989999999-8--194479999999999------99999999-----85899999999999999999878 Q ss_pred HH Q ss_conf 65 Q gi|254780512|r 583 CG 584 (692) Q Consensus 583 ~~ 584 (692) .+ T Consensus 355 ~~ 356 (374) T PRK11199 355 EQ 356 (374) T ss_pred HH T ss_conf 99 No 88 >PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional Probab=38.45 E-value=24 Score=14.43 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=19.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3269999999999999998864575 Q gi|254780512|r 119 GDFVIGLVVFMILITINFIVITKGA 143 (692) Q Consensus 119 gn~vvG~viF~Il~ivqfiVItkGa 143 (692) .+|++|++.-+|||++-|-++-.|+ T Consensus 16 ksY~iGFvLsviLT~ipF~lVm~~~ 40 (109) T PRK10582 16 KTYMTGFILSIILTVIPFWMVMTGA 40 (109) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999999998076 No 89 >pfam07185 DUF1404 Protein of unknown function (DUF1404). This family consists of several archaeal proteins of around 180 residues in length. Members of this family seem to be found exclusively in Sulfolobus tokodaii and Sulfolobus solfataricus. The function of this family is unknown. Probab=38.45 E-value=24 Score=14.43 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 88899999997399889999998999864578885 Q gi|254780512|r 218 IVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQ 252 (692) Q Consensus 218 iigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQ 252 (692) ++||+.+|..-++|+...-...+.+-.+||-..|- T Consensus 86 ~~gGil~Gss~~~m~~~~Ki~Lf~lwM~~Ds~lsi 120 (167) T pfam07185 86 LLGGILIGSSIRAMSLVFKITLFALWMIGDTLLSI 120 (167) T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999734528888899999999999998999999 No 90 >pfam00690 Cation_ATPase_N Cation transporter/ATPase, N-terminus. Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. Probab=38.35 E-value=23 Score=14.54 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=7.3 Q ss_pred HHHCCCCCHHHHHHHHHH Q ss_conf 876489998999999999 Q gi|254780512|r 168 DLSSGLIEEEEAKRRRKE 185 (692) Q Consensus 168 Dl~aG~I~~~eA~~rR~~ 185 (692) |...|+ +.+||.+||+. T Consensus 16 ~~~~GL-s~~~~~~r~~~ 32 (69) T pfam00690 16 DLEKGL-TEAEAEERLEK 32 (69) T ss_pred CCCCCC-CHHHHHHHHHH T ss_conf 944487-99999999998 No 91 >TIGR02044 CueR Cu(I)-responsive transcriptional regulator; InterPro: IPR011789 This entry represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system . This protein is a member of the MerR family of transcriptional activators and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue .; GO: 0003677 DNA binding, 0005507 copper ion binding, 0016563 transcription activator activity, 0045941 positive regulation of transcription. Probab=37.82 E-value=16 Score=15.82 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=17.3 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEE Q ss_conf 999999999809878832445437789871699 Q gi|254780512|r 384 SKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTI 416 (692) Q Consensus 384 ~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I 416 (692) +.+| ++++-|++.|++| .++.||- T Consensus 15 K~IR--~YE~kGLi~Pp~R-------se~GYR~ 38 (127) T TIGR02044 15 KSIR--YYEEKGLIPPPLR-------SEGGYRT 38 (127) T ss_pred HHHH--HHHHHCCCCCCCC-------CCCCCCC T ss_conf 8898--8776326799886-------8888856 No 92 >cd01678 PFL1 Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase. Probab=37.27 E-value=25 Score=14.30 Aligned_cols=40 Identities=20% Similarity=0.089 Sum_probs=26.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCEE Q ss_conf 755268899999999999809-8788324454377898716 Q gi|254780512|r 375 SQEDLFLRVSKIRRKFAVQYG-FIVPEIKVTTDISLPEKGY 414 (692) Q Consensus 375 ~~~~L~~rI~~iRk~la~elG-~~iP~IrIrDn~~L~~~~Y 414 (692) .|.++.....-+--+...++| .+=|.+.+|-+..+|.+-+ T Consensus 331 DG~davN~lSy~~L~tl~~lg~~pqPnltVr~s~~~Pe~F~ 371 (738) T cd01678 331 DGRSLVTKTSFRFLNTLYNLGPAPEPNLTVLWSEKLPENFK 371 (738) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH T ss_conf 67765689999999999961558999779997798979999 No 93 >COG2374 Predicted extracellular nuclease [General function prediction only] Probab=36.99 E-value=25 Score=14.27 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999987999872999999 Q gi|254780512|r 483 VVLTHLSEVIRNNLSQLLSYKDVKN 507 (692) Q Consensus 483 ViatHl~evir~~a~ellg~qEvq~ 507 (692) +=-.|+...+.+...+.+|.-|+++ T Consensus 502 ~Q~~k~v~ai~~ldaDV~GL~Eien 526 (798) T COG2374 502 RQRAKIVTAILTLDADVLGLMEIEN 526 (798) T ss_pred HHHHHHHHHHHHCCHHHHEEEEEEC T ss_conf 8778888888612401210235520 No 94 >PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional Probab=36.98 E-value=25 Score=14.27 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=8.1 Q ss_pred CCCHHHHHHHHHHHHHHH Q ss_conf 786478999999999999 Q gi|254780512|r 304 PNLPAFPFIMLGGFFACA 321 (692) Q Consensus 304 PGmP~~~Fl~la~~l~~~ 321 (692) =++|.+.=+.+++..+.+ T Consensus 82 ~~~~~ilAi~~Gs~vaa~ 99 (293) T PRK00972 82 FGLNPLLAIIVGSLVAAF 99 (293) T ss_pred CCCCHHHHHHHHHHHHHH T ss_conf 584099999998899999 No 95 >TIGR02262 benz_CoA_lig benzoate-CoA ligase family; InterPro: IPR011957 Characterised members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.. Probab=36.87 E-value=25 Score=14.26 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=74.4 Q ss_pred CCCCCEEEEEECC----EEEEEEEECCCCEEEECCCC----------CCCCCCCCEEE-------------------CCC Q ss_conf 7898716999748----24534884178341330588----------87678874101-------------------476 Q gi|254780512|r 408 SLPEKGYTIRVYG----TTVAISELRVGEVLVILGSG----------QKPTFPGDEVK-------------------EPA 454 (692) Q Consensus 408 ~L~~~~Y~I~I~G----v~va~gei~~~~lLai~~~~----------~~~~l~G~~~~-------------------eP~ 454 (692) .-|-..|+|++-| .+|+.||+ |.|++--|+. ....+.|..|| |=- T Consensus 343 G~PVPGY~~rL~~ed~G~~vA~Ge~--GeL~v~GPSSA~~YWn~R~Ksr~TF~G~WTrsGDKY~r~~dG~YtYaGR~DDm 420 (520) T TIGR02262 343 GKPVPGYRLRLVGEDGGQDVADGEV--GELLVSGPSSAAGYWNNREKSRATFEGEWTRSGDKYVRNDDGVYTYAGRTDDM 420 (520) T ss_pred CCCCCCCEEEEECCCCCCCCCCCCC--CCEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEECCCCEEEEECCCCCC T ss_conf 7548873688742778861137766--62046377545567988146132378895224871036378506870244352 Q ss_pred CCCCEEECCHHHHHHHHHCCCEEECHHHH----------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68830343978845888289907058899----------------------99-99999999879998729999999999 Q gi|254780512|r 455 FGMPAFAIMESFSDDLRRQGFHPIDNLAV----------------------VL-THLSEVIRNNLSQLLSYKDVKNLISR 511 (692) Q Consensus 455 fgl~A~WI~~~~~~~a~~~G~tvvdp~~V----------------------ia-tHl~evir~~a~ellg~qEvq~LLd~ 511 (692) |.--.+||+|-.-|.|-..--.|++++-| +. +-+.+-||.|..+.|+- T Consensus 421 lKVSGIyVSPfEvE~AL~~H~~VLEAAVvg~~D~~GL~KPKAFvVL~~G~~~~~~al~~~LK~hvK~~laP--------- 491 (520) T TIGR02262 421 LKVSGIYVSPFEVESALIAHPAVLEAAVVGVEDEDGLIKPKAFVVLRPGADIDNEALETELKEHVKDKLAP--------- 491 (520) T ss_pred EEECCEEECCHHHHHHHHCCHHHCEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC--------- T ss_conf 35524167817999885135122204215874888871771158507887645134489999999763178--------- Q ss_pred HHHHHH---HHHHHHHHCCCCHHHHHH Q ss_conf 766648---999986311599899999 Q gi|254780512|r 512 LDPEYQ---KLAEETCSSHISYSGIQA 535 (692) Q Consensus 512 L~~~~P---~LV~Elvp~~v~l~~i~~ 535 (692) =+|| +.|+|| ||. +-|.||| T Consensus 492 --yKYPRwi~~vd~L-PKT-AtGKiQR 514 (520) T TIGR02262 492 --YKYPRWIEFVDDL-PKT-ATGKIQR 514 (520) T ss_pred --CCCCCCEEEECCC-CCC-CCCHHHH T ss_conf --6388514444078-886-4511331 No 96 >KOG0023 consensus Probab=36.75 E-value=23 Score=14.63 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC Q ss_conf 2999999999976664899998631159989999999999974986 Q gi|254780512|r 501 SYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVS 546 (692) Q Consensus 501 g~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~Vs 546 (692) +|.|||++||-..+.. ++--+ ++++++.+..+++|+.+-.|- T Consensus 306 ~~ket~E~Ldf~a~~~---ik~~I-E~v~~~~v~~a~erm~kgdV~ 347 (360) T KOG0023 306 SRKETQEALDFVARGL---IKSPI-ELVKLSEVNEAYERMEKGDVR 347 (360) T ss_pred CHHHHHHHHHHHHCCC---CCCCE-EEEEHHHHHHHHHHHHHCCEE T ss_conf 4887999999997178---86746-997542778999998716701 No 97 >PRK06276 acetolactate synthase catalytic subunit; Reviewed Probab=36.32 E-value=26 Score=14.20 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=25.0 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-|+.-|+..| -|=|.-.-++++.-+-..++ T Consensus 44 ~rhE~~A~~aAdgYaR~tgk~gv~~~t~GPG~~N~~~gv~~A~~~~~ 90 (586) T PRK06276 44 TRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIATAYADSS 90 (586) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCC T ss_conf 48789999999999999799889998367359999999999998599 No 98 >PRK06965 acetolactate synthase 3 catalytic subunit; Validated Probab=36.31 E-value=26 Score=14.20 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=25.8 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-|+.-|+..| -|=|..+-+.++.-+-+.++ T Consensus 65 ~rhE~~A~~mAdgYaR~tg~~gv~~~t~GPG~~N~~~gia~A~~d~~ 111 (587) T PRK06965 65 VRHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSI 111 (587) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 49689999999999999699889997567049999999999997499 No 99 >KOG0495 consensus Probab=36.22 E-value=17 Score=15.63 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=68.1 Q ss_pred HCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 28990705889999999999998799987299999999997666489---------999863115998999999999997 Q gi|254780512|r 472 RQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQK---------LAEETCSSHISYSGIQAVLKLLLA 542 (692) Q Consensus 472 ~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~---------LV~Elvp~~v~l~~i~~VLq~LL~ 542 (692) ..|-|++||-..+ |.|.-++..+..++-.++-.+.||-.+.+.+|+ -+||+ ..+++ |-|+|.. T Consensus 238 vtgqtvvDpkgYL-tdL~sm~p~~~~dl~DikKaR~lLKSvretnP~hp~gWIAsArLEEv-agKl~------~Ar~~I~ 309 (913) T KOG0495 238 VTGQTVVDPKGYL-TDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEV-AGKLS------VARNLIM 309 (913) T ss_pred CCCCCCCCCHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-HHHHH------HHHHHHH T ss_conf 7877520716777-68875277766767889999999999985399998067889899988-63789------9999999 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---HHHHHHHHHH---CCCCEEEEEEECHHHHHHH Q ss_conf 4986546999999998753357998999999999---9899986520---7788489998887899999 Q gi|254780512|r 543 EHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRI---RMAQQICGDL---APTGILNILKLGNHWDMIF 605 (692) Q Consensus 543 E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~---aL~R~I~~~~---~~~g~L~vi~L~p~lE~~l 605 (692) +| -+-+++. -+...|.+|- ..++.|+.+- .|.. ...|.=..++|+.. T Consensus 310 ~G-------------Ce~cprS--eDvWLEaiRLhp~d~aK~vvA~Avr~~P~S-v~lW~kA~dLE~~~ 362 (913) T KOG0495 310 KG-------------CEECPRS--EDVWLEAIRLHPPDVAKTVVANAVRFLPTS-VRLWLKAADLESDT 362 (913) T ss_pred HH-------------HHHCCCH--HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHH T ss_conf 88-------------7638842--889999974498687889999998738977-53453497556678 No 100 >COG4800 Predicted transcriptional regulator with an HTH domain [Transcription] Probab=35.99 E-value=26 Score=14.16 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=59.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999976664899998631159989999999999974986546999999998753357998999999999989998 Q gi|254780512|r 503 KDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQI 582 (692) Q Consensus 503 qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I 582 (692) .+.|.+++.+.-+..+..+- .-+|++.+-++||. ..--+.+++.|+.|+-++-.++.--..-.=..|..|-.-- T Consensus 19 ~~l~~~l~Elglt~~eFak~---anIP~StLYKil~G---~dpr~~tl~~I~ktir~~ek~en~~fiA~IAAR~vL~~i~ 92 (170) T COG4800 19 SCLQKLLDELGLTPSEFAKR---ANIPLSTLYKILKG---SDPRYDTLTRIFKTIRSYEKKENIGFIALIAARYVLEEIK 92 (170) T ss_pred HHHHHHHHHCCCCHHHHHHH---CCCCHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH T ss_conf 99999999819998999887---09989999999817---9965778999999999887504778466534488998887 Q ss_pred HHHHCCCCEEEEEEE--CHHHHHHHHHHHHCC Q ss_conf 652077884899988--878999999983037 Q gi|254780512|r 583 CGDLAPTGILNILKL--GNHWDMIFYQAIQRD 612 (692) Q Consensus 583 ~~~~~~~g~L~vi~L--~p~lE~~l~~~i~~t 612 (692) ..+-.=+|.+..+-- ...+|+.+..++|.. T Consensus 93 ~~kk~i~gk~~~ireYpa~slEeaIvAaVrAE 124 (170) T COG4800 93 FGKKGINGKSYLIREYPASSLEEAIVAAVRAE 124 (170) T ss_pred HHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH T ss_conf 60103367336887436452899999999863 No 101 >PRK06531 yajC preprotein translocase subunit YajC; Validated Probab=35.71 E-value=26 Score=14.13 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=13.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8647899999999999999886443222210 Q gi|254780512|r 305 NLPAFPFIMLGGFFACAGFYVPYKNELQRLA 335 (692) Q Consensus 305 GmP~~~Fl~la~~l~~~a~~~~r~~~~~~~~ 335 (692) |||.+.++. ++.++.|++.|.++++..+ T Consensus 2 ~~~~iim~v---v~~~~~ffmiRpQkK~qke 29 (120) T PRK06531 2 GFPTIIMFV---VMLGLIFFMQRQQKKQAQE 29 (120) T ss_pred CCHHHHHHH---HHHHHHHHEECHHHHHHHH T ss_conf 822899999---9999998603748899999 No 102 >COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism] Probab=35.49 E-value=27 Score=14.11 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=36.1 Q ss_pred HCCCCHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEECHHHHHHHHHHHHCCCCCCCC Q ss_conf 74986546--99999999875335799899999999998999865207-7884899988878999999983037778846 Q gi|254780512|r 542 AEHVSIRN--LPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLA-PTGILNILKLGNHWDMIFYQAIQRDSKGECV 618 (692) Q Consensus 542 ~E~VsIRd--lr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~~-~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~ 618 (692) ..|+|+.| .-.=||++.+|+.........+=-+=.+|+|+--.++- ..+.+.-+-|+...|-.+. .+ +.-+|.| T Consensus 39 ~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~-Rm-~~R~gHF- 115 (161) T COG3265 39 SAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILE-RM-KARKGHF- 115 (161) T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH-HH-HHCCCCC- T ss_conf 27998984112479999999999864279816996278878899998545997389996388999999-98-7605677- Q ss_pred CCCCCHHHH Q ss_conf 456698899 Q gi|254780512|r 619 DFNVEPRAV 627 (692) Q Consensus 619 ~l~l~P~~~ 627 (692) |.++++ T Consensus 116 ---M~~~ll 121 (161) T COG3265 116 ---MPASLL 121 (161) T ss_pred ---CCHHHH T ss_conf ---888999 No 103 >TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others. Probab=35.45 E-value=27 Score=14.10 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 8999999999997498 Q gi|254780512|r 530 YSGIQAVLKLLLAEHV 545 (692) Q Consensus 530 l~~i~~VLq~LL~E~V 545 (692) ...+.+.|..|++|+= T Consensus 174 k~~va~~l~e~~~~gk 189 (352) T TIGR03282 174 KHKVAKRLVDLIQEGK 189 (352) T ss_pred HHHHHHHHHHHHHCCC T ss_conf 9999999999997478 No 104 >TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase; InterPro: IPR012811 Three pathways exist for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium favours trehalose, physiological concentrations of trehalose may be much greater than that of maltose, and TreS may act largely in its degradation. This entry describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose.. Probab=35.28 E-value=27 Score=14.08 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=47.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEE Q ss_conf 75526889999999999980987883244543778987169997482453488417834133058887678874101 Q gi|254780512|r 375 SQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVK 451 (692) Q Consensus 375 ~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~ 451 (692) +...+.+++...|+++++.+-=+.|. .-+.-.|+|+ |.++-|+.|...++....+++|+|-+ T Consensus 378 ~~r~~a~~L~~~r~~L~~~l~~l~~~---------~~d~l~iR~H------GDFhLGQvL~~~~D~~lIDFEGEPar 439 (568) T TIGR02457 378 AARALADKLLAQRKELAAHLRALVKR---------EIDGLKIRIH------GDFHLGQVLVVQDDAVLIDFEGEPAR 439 (568) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHCCCEEEEC------CCCCCCEEEEECCCEEEEECCCCCCC T ss_conf 66999999999989999998553167---------6195111000------34314415666084789614889888 No 105 >TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily; InterPro: IPR014344 Members of this entry belong to the family of polysaccharide deacetylases. All are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the gene coding region for the EpsH homologue that is the putative exosortase gene.. Probab=35.13 E-value=18 Score=15.34 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99997666489999863 Q gi|254780512|r 508 LISRLDPEYQKLAEETC 524 (692) Q Consensus 508 LLd~L~~~~P~LV~Elv 524 (692) .|.++.++||+||++++ T Consensus 54 tLGWvAERyP~LVr~Iv 70 (274) T TIGR03006 54 TLGWVAERYPELVRRIV 70 (274) T ss_pred ECCHHHHCCHHHHHHHH T ss_conf 40347540528899999 No 106 >COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism] Probab=34.78 E-value=27 Score=14.03 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=30.7 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 875145013269999999999999998864575146665545442037603454787876489 Q gi|254780512|r 111 GFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGL 173 (692) Q Consensus 111 aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~ 173 (692) .|++.--..-=+.|+++=++++.+=|-+.|+|.= -++|=- .-==.|+|+-.=+.-|+ T Consensus 14 ~~~~~~~~n~r~~~ml~al~~I~lfF~~~T~g~~----l~p~Nl--~NL~~Q~S~i~imA~GM 70 (394) T COG4214 14 RFGRLKSLNLRVYGMLIALALIMLFFQILTGGVF----LSPRNL--SNLLRQNSIIGILALGM 70 (394) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE----ECCCHH--HHHHHHHHHHHHHHHCC T ss_conf 6898874216799999999999999997069768----523118--99998646999997350 No 107 >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Probab=34.76 E-value=27 Score=14.03 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=20.4 Q ss_pred HCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH Q ss_conf 73998899999989998---------6457888515899987331 Q gi|254780512|r 228 RYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAA 263 (692) Q Consensus 228 q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaG 263 (692) .|--..+-|+.-|+.+| -|=|.-.-++++.-+-..+ T Consensus 45 rhE~~A~~~AdgYar~tg~~gv~~~t~GPG~~N~~~gl~~A~~~~ 89 (548) T PRK08978 45 RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADALLDS 89 (548) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 878999999999999969988999756701999999999999849 No 108 >TIGR03499 FlhF flagellar biosynthetic protein FlhF. Probab=34.67 E-value=27 Score=14.02 Aligned_cols=56 Identities=13% Similarity=0.002 Sum_probs=41.7 Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 599899999999999749865469999999987533579989999999999899986520 Q gi|254780512|r 527 HISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDL 586 (692) Q Consensus 527 ~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~ 586 (692) ....+.++.+.++|++.+|+=.=.+.|++.+ ....|.+...++++..|.+.|.... T Consensus 130 ~~~~~~~~~l~~~L~~~gv~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~~i~~~~ 185 (282) T TIGR03499 130 LQRDPEGAKLYERLEEAGVSEELARELLEKL----PERADAESAWRWLREALENMLPVKP 185 (282) T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 4588689999999998699999999999974----6029978999999999996477788 No 109 >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional Probab=34.51 E-value=27 Score=14.07 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=15.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999987999872 Q gi|254780512|r 479 DNLAVVLTHLSEVIRNNLSQLLS 501 (692) Q Consensus 479 dp~~ViatHl~evir~~a~ellg 501 (692) |-++-+.+|=++..-+|...||. T Consensus 314 nlps~~~~~aS~lya~Ni~~~l~ 336 (510) T PRK09424 314 DLPSRLPTQSSQLYGTNLVNLLK 336 (510) T ss_pred CHHCCCHHHHHHHHHHHHHHHHH T ss_conf 51103778999999999999999 No 110 >smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation Probab=33.90 E-value=28 Score=13.93 Aligned_cols=77 Identities=9% Similarity=0.154 Sum_probs=42.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCC-CCHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9999997666489999863115-----99899999999999749-8654699999---9998753357998999999999 Q gi|254780512|r 506 KNLISRLDPEYQKLAEETCSSH-----ISYSGIQAVLKLLLAEH-VSIRNLPLIL---ESIAEVAPHSRKTSHIVEQVRI 576 (692) Q Consensus 506 q~LLd~L~~~~P~LV~Elvp~~-----v~l~~i~~VLq~LL~E~-VsIRdlr~Il---EaLad~a~~~kD~~~LtE~VR~ 576 (692) +++-|.++++||.+.+++..+. -....+.+|.+.+.++| +.=--...++ -.++.++.+...++ +.+.+=. T Consensus 2 r~vgdele~~~~~~f~~~~~~l~i~~~~a~~~f~~Va~elF~dG~inWGRIval~~F~~~la~~~~~~~~~~-~v~~i~~ 80 (100) T smart00337 2 RRVGDELNKRYERAFSSFSAQLHVTPGTAIELFGEVATELFSDGNINWGRVVALLSFGGALAVKLVQKEDPD-LVSRLAS 80 (100) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHH T ss_conf 068899999989999999987089955289999999999982699669999999999999999999849940-8999999 Q ss_pred HHHHHHH Q ss_conf 9899986 Q gi|254780512|r 577 RMAQQIC 583 (692) Q Consensus 577 aL~R~I~ 583 (692) -+.++|. T Consensus 81 ~~~~~l~ 87 (100) T smart00337 81 WLSEFLR 87 (100) T ss_pred HHHHHHH T ss_conf 9999999 No 111 >PRK09546 zntB zinc transporter; Reviewed Probab=33.73 E-value=28 Score=13.91 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=51.4 Q ss_pred HHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC Q ss_conf 84588828990705889999999999998799987299999999997666489999863115998999999999997498 Q gi|254780512|r 466 FSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHV 545 (692) Q Consensus 466 ~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~V 545 (692) -++.. ..|-...++.+.++ |+.+-+..+..+++. +...-+|.+|.. +.++-.| .-+++.++=|.+++=+= T Consensus 130 vr~~l-~~g~gp~s~~~~L~-~L~d~l~d~~~~~v~--~L~~~ld~lEd~---vl~~~~~---~r~~L~~lRR~~i~LRR 199 (327) T PRK09546 130 VVSDL-QEGTGPTDCGGWLV-DVCDALTDHASEFIE--QLHDKIIDLEDN---LLDQQIP---PRGFLALLRKQLIVMRR 199 (327) T ss_pred HHHHH-HCCCCCCCHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHCCCCC---HHHHHHHHHHHHHHHHH T ss_conf 99999-83999999899999-999999999999999--999999998888---7505771---14489999999999999 Q ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 65469999999987533579989999999999899 Q gi|254780512|r 546 SIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQ 580 (692) Q Consensus 546 sIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R 580 (692) .+...|-.++.|.. .++..+.+..|..|+. T Consensus 200 ~l~Pqr~~l~~L~~-----~~~~~l~~~~~~~lrd 229 (327) T PRK09546 200 YMAPQRDVYARLAS-----ERLPWMSDDDRRRMQD 229 (327) T ss_pred HHHHHHHHHHHHHH-----CCCCCCCHHHHHHHHH T ss_conf 88779999999972-----6875589678899999 No 112 >PRK10034 fructuronate transporter; Provisional Probab=33.65 E-value=28 Score=13.90 Aligned_cols=84 Identities=12% Similarity=0.208 Sum_probs=52.9 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 99999999999999513770454200489999999998554888889884377776326789998751450132699999 Q gi|254780512|r 47 ASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLV 126 (692) Q Consensus 47 ~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~v 126 (692) .+=++++++++++. -..+..|-++++.+-+.-+..-+..+..+ ..+.+.||+-.- -+|++ T Consensus 8 ~~~~~I~~li~li~-----k~KlhpFlaLli~ai~~gl~~G~~~~~~~-----------~~i~~GfG~tlg----~igii 67 (447) T PRK10034 8 WVVFGIGLMLVLNL-----KFKINSMVALLVAALSVGMLAGMDLMSLL-----------HTMKAGFGNTLG----ELAII 67 (447) T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCCHHHHH-----------HHHHHHHHHHHH----HHHHH T ss_conf 99999999999999-----98562999999999999998399989999-----------999988888889----99999 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 999999999988645751466655 Q gi|254780512|r 127 VFMILITINFIVITKGATRIAEVG 150 (692) Q Consensus 127 iF~Il~ivqfiVItkGa~RvaEV~ 150 (692) |.+=-++=+++--|-||+|+|+-= T Consensus 68 I~lG~iiG~~Le~SGaa~~iA~~~ 91 (447) T PRK10034 68 VVFGAVIGKLMVDSGAAHQIAHTL 91 (447) T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999838199999999 No 113 >pfam08302 tRNA_lig_CPD Fungal tRNA ligase phosphodiesterase domain. This domain is found in fungal tRNA ligases and has cyclic phosphodiesterase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns. Probab=33.57 E-value=17 Score=15.61 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=5.2 Q ss_pred CCHHHHHHHHHHH Q ss_conf 6988999999999 Q gi|254780512|r 622 VEPRAVEMFSENA 634 (692) Q Consensus 622 l~P~~~~~l~~~i 634 (692) +-|...+.|+++. T Consensus 212 VKP~eSNdLL~rw 224 (255) T pfam08302 212 VKPKESNDLLKRW 224 (255) T ss_pred CCCCHHHHHHHHH T ss_conf 8820389999999 No 114 >TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process. Probab=33.57 E-value=15 Score=15.95 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=35.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 666489999863115998999999999997498654---69999999987533579989999 Q gi|254780512|r 513 DPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIR---NLPLILESIAEVAPHSRKTSHIV 571 (692) Q Consensus 513 ~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIR---dlr~IlEaLad~a~~~kD~~~Lt 571 (692) =++.|+||++++ +.+.+. -.|.|.|. ++++|.|+|..+-.-|+++-.|. T Consensus 301 ~~Ndp~LV~~iL-~~L~~~---------~~~~Vt~~KQ~~~~~l~~AL~~~fELT~~t~~~~ 352 (628) T TIGR01931 301 YKNDPALVKEIL-ELLNLD---------PDEKVTVGKQGKVIPLKEALISHFELTQLTKPLV 352 (628) T ss_pred CCCCHHHHHHHH-HHCCCC---------CCCEEEECCCCCEEHHHHHHHHCCCHHCCCHHHH T ss_conf 488989999999-970889---------6660686246764148898640576010487899 No 115 >pfam02901 PFL Pyruvate formate lyase. Probab=33.16 E-value=29 Score=13.84 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=32.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEE Q ss_conf 75526889999999999980987883244543778987169 Q gi|254780512|r 375 SQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYT 415 (692) Q Consensus 375 ~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~ 415 (692) .|.+....++-+-=+-+.++-.+=|.+.+|-+.++|+.-++ T Consensus 344 dG~da~n~ls~~~L~a~~~l~~~~P~l~vr~~~~~p~~f~~ 384 (645) T pfam02901 344 DGRDAVNELSYLILEALDNLPLPQPNLTVRWSKKLPEEFLK 384 (645) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH T ss_conf 88754478899999999865999997799988999999999 No 116 >PRK10365 transcriptional regulatory protein ZraR; Provisional Probab=32.86 E-value=29 Score=13.81 Aligned_cols=22 Identities=5% Similarity=0.155 Sum_probs=9.8 Q ss_pred HHEEEECCCCCCHHHHHHHHHH Q ss_conf 1026623774305899999876 Q gi|254780512|r 263 AFLVSRTTSKGSTNTAIVEQLS 284 (692) Q Consensus 263 GiiVTRvss~~~lg~~i~~Ql~ 284 (692) .++++=+.-.+.-|-++.+++- T Consensus 51 DlvllD~~mp~~~Gl~lL~~l~ 72 (441) T PRK10365 51 DLVLCDVRMAEMDGIATLKEIK 72 (441) T ss_pred CEEEECCCCCCCCHHHHHHHHH T ss_conf 9999889999998999999998 No 117 >PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional Probab=32.78 E-value=22 Score=14.69 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECC Q ss_conf 999999999809878832445437 Q gi|254780512|r 384 SKIRRKFAVQYGFIVPEIKVTTDI 407 (692) Q Consensus 384 ~~iRk~la~elG~~iP~IrIrDn~ 407 (692) +.-||++...-=...|++--|.|- T Consensus 94 R~~rR~lQR~Tcw~y~gVAtr~Nn 117 (382) T PTZ00210 94 RSRRRDLQRQTCWKYSGVATRSNN 117 (382) T ss_pred HHHHHHHHHHHHHCCCCCEEECCC T ss_conf 888888766334136411011368 No 118 >pfam04352 ProQ ProQ/FINO family. This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProQ, in Escherichia coli. This family includes several bacterial fertility inhibition (FINO) proteins. The conjugative transfer of F-like plasmids is repressed by FinO, an RNA binding protein. FinO interacts with the F-plasmid encoded traJ mRNA and its antisense RNA, FinP, stabilising FinP against endonucleolytic degradation and facilitating sense-antisense RNA recognition. Probab=32.41 E-value=30 Score=13.76 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=56.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 9999999999766648999986-311599899999999999749865469999999987533579989999999999899 Q gi|254780512|r 502 YKDVKNLISRLDPEYQKLAEET-CSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQ 580 (692) Q Consensus 502 ~qEvq~LLd~L~~~~P~LV~El-vp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R 580 (692) ++.++..++.|.+.+|.+-.+- -++.+-+|..+++++.+=.+++|- ..+|.+|+. T Consensus 3 ~~~~~~~i~~L~~~fP~~F~~~~~~kPLkIGI~~dl~~~~~~~~ls~------------------------~~lr~Al~~ 58 (114) T pfam04352 3 LDPVKEAIAKLKERFPLLFPDNGAPKPLKIGIFEDLAADLKDDELSK------------------------TELRRALRA 58 (114) T ss_pred CCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCH------------------------HHHHHHHHH T ss_conf 89699999999986867509899988850579999997720158899------------------------999999999 Q ss_pred HHHH-HHCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9865-20778848999888789999999830377788464566988999999999999999 Q gi|254780512|r 581 QICG-DLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQ 640 (692) Q Consensus 581 ~I~~-~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~ 640 (692) +-.. +| +..+..++.|.+-+|.... .++++..+.-...+.+..++ T Consensus 59 yt~s~rY--------------l~~~~~ga~R~DL~G~p~g-~Vt~e~~~~A~~~l~~~~~~ 104 (114) T pfam04352 59 YTRSWRY--------------LAAVKEGAPRVDLDGNPVG-AVTAEEAQHAQKRLAERKAK 104 (114) T ss_pred HHCCHHH--------------HHHHHCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHH T ss_conf 9888989--------------9998679936899999878-27999999999999999999 No 119 >PRK11269 glyoxylate carboligase; Provisional Probab=32.37 E-value=30 Score=13.75 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=26.0 Q ss_pred HHCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998----------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS----------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT----------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-++.-|+.+| .|=|.-.-+.+|.-+.+.++ T Consensus 48 ~rhE~~A~~mAdgyaR~t~G~~gV~~~t~GPG~tN~~tgl~~A~~d~~ 95 (591) T PRK11269 48 ARHVEGASHMAEGYTRAKAGNIGVCIGTSGPAGTDMITGLYSASADSI 95 (591) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 496899999999999861898099995776189999999999984099 No 120 >TIGR01051 topA_bact DNA topoisomerase I; InterPro: IPR005733 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry describes topoisomerase I from bacteria, which is more closely related to archaeal than to eukaryotic topoisomerase I . Topoisomerase I is the major enzyme for relaxing negatively supercoiled DNA, and its presence is balanced by reverse gyrase, which can introduce negative supercoils. Prokaryotic topoisomerase I folds in an unusual way to give 4 distinct domains, enclosing a hole large enough to accommodate a double-stranded DNA segment. A tyrosine at the active site, which lies at the interface of 2 domains, is involved in transient breakage of a DNA strand, and the formation of a covalent protein-DNA intermediate through a 5-phosphotyrosine linkage. The structure reveals a plausible mechanism by which this and related enzymes could catalyse the passage of one DNA strand through a transient break in another strand . Topoisomerase I require Mg2+ as a cofactor for catalysis to take place. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003917 DNA topoisomerase type I activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome. Probab=32.00 E-value=19 Score=15.16 Aligned_cols=21 Identities=10% Similarity=0.483 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999879998729999999 Q gi|254780512|r 488 LSEVIRNNLSQLLSYKDVKNL 508 (692) Q Consensus 488 l~evir~~a~ellg~qEvq~L 508 (692) ++..|..|-++++..+-|..| T Consensus 568 V~~~Le~hF~~~Vd~~FTA~M 588 (688) T TIGR01051 568 VTDLLEKHFGELVDYDFTAKM 588 (688) T ss_pred HHHHHHHHCCCCCCCHHHHHH T ss_conf 999988642643355023764 No 121 >TIGR00801 ncs2 uracil-xanthine permease; InterPro: IPR006042 A number of transport proteins which are involved in the uptake of xanthine or uracil are evolutionary related . They are proteins of from 430 to 595 residues that seem to contain 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane. Probab=31.85 E-value=30 Score=13.69 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=41.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHH-HHH--CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 6457888515899987331026623774305899999-876--1864899999999998615786478999999999999 Q gi|254780512|r 245 VGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVE-QLS--HYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACA 321 (692) Q Consensus 245 IGDGLVsQIPaLliS~aaGiiVTRvss~~~lg~~i~~-Ql~--~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~ 321 (692) -||||.+-|.++.=|. -...+++-++= |++ .+..+...+|.++.+||++|=+=-+.-..=+..+++. T Consensus 325 ladGl~~~~~gl~g~~----------P~Ttf~qN~Gv~~lT~v~sr~V~~~~avil~~lG~~pK~aAl~~~IP~~VlGG~ 394 (480) T TIGR00801 325 LADGLATLLAGLVGGF----------PNTTFAQNIGVIALTRVASRYVIVGAAVILIALGFVPKIAALITSIPSPVLGGA 394 (480) T ss_pred EHHHHHHHHHHHHCCC----------CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 1004999998884268----------976013423022024555405788899999998777899999962576113135 Q ss_pred HHHH Q ss_conf 9988 Q gi|254780512|r 322 GFYV 325 (692) Q Consensus 322 a~~~ 325 (692) ...+ T Consensus 395 ~~~m 398 (480) T TIGR00801 395 SIVM 398 (480) T ss_pred HHHH T ss_conf 8999 No 122 >pfam09552 RE_BstXI BstXI restriction endonuclease. This family includes the BstXI (recognizes and cleaves CCANNNNN^NTGG) restriction endonuclease. Probab=31.73 E-value=22 Score=14.78 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=17.3 Q ss_pred HHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEE Q ss_conf 9980987883244543778987169997482453 Q gi|254780512|r 391 AVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVA 424 (692) Q Consensus 391 a~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va 424 (692) ..+|-+.=|.+|..|- -++|.-+|.|..-. T Consensus 104 ~~gL~~T~p~vr~~d~----gG~yv~ri~gtt~E 133 (287) T pfam09552 104 VRGLKKTGPIVRSKDV----GGHYVLRLSGTTNE 133 (287) T ss_pred HCCCCCCCCCEECCCC----CCEEEEEEECCCHH T ss_conf 1046567873222676----44266664245433 No 123 >PRK13435 response regulator; Provisional Probab=31.61 E-value=11 Score=17.09 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=38.8 Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHC Q ss_conf 07058899999999999987999872-999999999976664899998631159989-999999999974 Q gi|254780512|r 476 HPIDNLAVVLTHLSEVIRNNLSQLLS-YKDVKNLISRLDPEYQKLAEETCSSHISYS-GIQAVLKLLLAE 543 (692) Q Consensus 476 tvvdp~~ViatHl~evir~~a~ellg-~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~-~i~~VLq~LL~E 543 (692) -+||-...++..+.+.++++-++-.+ -.....-++.+++..|.++ ++-=.+|-+ .-.+++|+|-++ T Consensus 5 LIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlv--llDi~LpdG~~G~e~~r~l~~~ 72 (141) T PRK13435 5 LIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVA--LVDIRLADGPTGVEVARRLSID 72 (141) T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEE--EECCCCCCCCCHHHHHHHHHHC T ss_conf 9989989999999999998799799975999999999765999899--9788789999899999999875 No 124 >pfam00262 Calreticulin Calreticulin family. Probab=31.56 E-value=30 Score=13.66 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=32.6 Q ss_pred CCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHH Q ss_conf 9871699974824534884178341330588876788741014766883034397884 Q gi|254780512|r 410 PEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFS 467 (692) Q Consensus 410 ~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~ 467 (692) +.|+|.|+|+|..+.+|.+.-+.- + +-.+-.+..||.-.-|+-|.+.+.- T Consensus 165 pdntfei~IDg~~~~~GsL~~df~----P----p~~pPk~I~DP~d~KP~DWdd~~~I 214 (359) T pfam00262 165 PDNTFEILIDGEVVKSGSLLEDFD----P----PFNPPKEIPDPTDKKPEDWDDREKI 214 (359) T ss_pred CCCEEEEEECCEEEECCCCHHHCC----C----CCCCCCCCCCCCCCCCCCCCCHHCC T ss_conf 898089998887853364242156----6----6798022688010586553001017 No 125 >COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Probab=31.40 E-value=31 Score=13.64 Aligned_cols=170 Identities=22% Similarity=0.165 Sum_probs=78.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC--CCCC----HHHHHHHH Q ss_conf 99999999988899999997399889999998999864578885158999873310266237--7430----58999998 Q gi|254780512|r 209 ASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPALIISLSAAFLVSRTT--SKGS----TNTAIVEQ 282 (692) Q Consensus 209 AgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQIPaLliS~aaGiiVTRvs--s~~~----lg~~i~~Q 282 (692) .++.++.|=-.-|++.|.+.+.|+. |=||.-|-+-+.+.+.+ +.|||-- ++.+ +|--. T Consensus 24 ~Si~~tvi~A~~GIi~GL~~gS~~I-----------iFDGvYSl~da~mtlls--L~vsrli~~~p~~~RF~~Gfwh--- 87 (314) T COG3965 24 ISIAGTVIFAAFGIIWGLLSGSMSI-----------IFDGVYSLIDAGMTLLS--LLVSRLIAKDPRDARFPYGFWH--- 87 (314) T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEE-----------EECCHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCCCHHH--- T ss_conf 9999999999999999998266588-----------86018999999999999--9999996049975656765010--- Q ss_pred HHCCCHHHHHHHHHHHHHH-----------------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--- Q ss_conf 7618648999999999986-----------------1578647899999999999999886443222210---0110--- Q gi|254780512|r 283 LSHYPRALLISAFFMIVLS-----------------VMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLA---KVAQ--- 339 (692) Q Consensus 283 l~~~p~aL~iaa~~l~~lg-----------------lvPGmP~~~Fl~la~~l~~~a~~~~r~~~~~~~~---~~~~--- 339 (692) -+|-+|.+-+.++.++. +.||.-...-+.-...|+..+|+++|.++.-+.. .+.. T Consensus 88 --lEplvL~ing~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~ 165 (314) T COG3965 88 --LEPLVLAINGTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWL 165 (314) T ss_pred --HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf --000576421289999999999999999863983214028899999999999999999976500378840015888999 Q ss_pred --------------CCCCCCCCCCCCCHHHCCCCCHHHHC--CCCCCC-----------CCCCCCCHHHHHHHHHHHHHH Q ss_conf --------------00235667675300100246012210--111112-----------345755268899999999999 Q gi|254780512|r 340 --------------IQEASKQNQHSAQLNFITSGVELVLG--SLVSNR-----------LLSSQEDLFLRVSKIRRKFAV 392 (692) Q Consensus 340 --------------~~~~~~~~~~~~~~~~~~~~i~l~lg--~li~l~-----------~~~~~~~L~~rI~~iRk~la~ 392 (692) ....-..+...+ ...-.||.-+.+- +.+++- ..-...++.++|.+.-.++.+ T Consensus 166 Mst~lS~al~VaF~~a~~l~~T~~a~-l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~el~q~ies~~~~~v~ 244 (314) T COG3965 166 MSTCLSAALFVAFAAAWLLAGTKFAH-LVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPNELQQSIESHAHEIVE 244 (314) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHH-HHCCCCHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 99889999999999999864684225-30014789999997824624487899999999951937889999999999999 Q ss_pred HHCCC Q ss_conf 80987 Q gi|254780512|r 393 QYGFI 397 (692) Q Consensus 393 elG~~ 397 (692) ++||+ T Consensus 245 k~~f~ 249 (314) T COG3965 245 KYGFP 249 (314) T ss_pred HHCCC T ss_conf 86585 No 126 >pfam01008 IF-2B Initiation factor 2 subunit family. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. Probab=30.90 E-value=31 Score=13.58 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=79.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999997666489999863115998999999999997498654699999999875335799899999999998999865 Q gi|254780512|r 505 VKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICG 584 (692) Q Consensus 505 vq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~ 584 (692) .+.+.+.+++.--.|.+- -|..++++...+-+++.+.|--+=.+..-+-+.+.+++..--+ . .+..+.+++.+=+. T Consensus 28 ~~~l~~~l~~~~~~L~~a-RPt~v~l~nai~~~~~~i~~~~~~~~~~~~k~~l~~~~~~~~~--e-~~~a~~~Ia~~a~~ 103 (281) T pfam01008 28 VAELKEQLRSAIEFLISA-RPTAVSLGNAIDRLLRIISELHSSSDVEEAKESLIEAADEFID--E-IEEARRKIGAIAAE 103 (281) T ss_pred HHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHH T ss_conf 899999999999999866-9975029999999999998456689999999999999999999--9-99999999999997 Q ss_pred HHCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH Q ss_conf 207788489998887899999998303777884645669889999999999999999956998799828335489999 Q gi|254780512|r 585 DLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRM 662 (692) Q Consensus 585 ~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~ 662 (692) .+.++.++=...-+...+..++.+.++..+-.- +..| .+...+. +.-...+...|.+..+++-..+...+++ T Consensus 104 ~I~~g~~ILT~~~S~tv~~~l~~A~~~gk~f~V--~v~E---srP~~~G-~~~a~~L~~~gI~~t~i~dsa~~~~m~~ 175 (281) T pfam01008 104 LIKDGDTILTHCNSGTVLGVLRAAHKEGKRFRV--IVTE---SRPRLQG-RLTAKELVQAGIPVTLITDSAVGYVMQE 175 (281) T ss_pred HCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEE--EEEC---CCCCCCH-HHHHHHHHHCCCCCEEEEHHHHHHHHHH T ss_conf 748998899756828999999999985990799--9966---8974013-8999999857999689605389998501 No 127 >PRK10472 low affinity gluconate transporter; Provisional Probab=30.59 E-value=31 Score=13.55 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=53.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHH Q ss_conf 99999999999999995137704542004899999999985548888898843777763267899987514501326999 Q gi|254780512|r 45 GLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIG 124 (692) Q Consensus 45 ~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG 124 (692) ++.+=.+++++++++. -..+..|-++++.+-..-|..-...+..+ ..+-+.||+-. --+| T Consensus 7 ll~~~~~I~~li~li~-----k~KlhpFlaLli~a~~~Gl~~G~~~~~i~-----------~~i~~GfG~tl----g~ig 66 (445) T PRK10472 7 VLTAVGSVLLLLFLVM-----KARMHAFVALMVVSMGAGLFSGMPLDKIA-----------ATMEKGMGGTL----GFLA 66 (445) T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCCHHHHH-----------HHHHHHHHHHH----HHHH T ss_conf 9999999999999999-----99650999999999999997199989999-----------99998788888----8999 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 99999999999988645751466655 Q gi|254780512|r 125 LVVFMILITINFIVITKGATRIAEVG 150 (692) Q Consensus 125 ~viF~Il~ivqfiVItkGa~RvaEV~ 150 (692) ++|.+=-++=+++-.+-||+|+|+-= T Consensus 67 iiI~lG~~iG~~L~~SGaa~~ia~~~ 92 (445) T PRK10472 67 VVVALGAMFGKILHETGAVDQIAVKM 92 (445) T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 99999999999999859599999999 No 128 >PRK07064 hypothetical protein; Provisional Probab=30.45 E-value=32 Score=13.53 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=28.8 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-...+-++.-|+..| -|=|.-.-++++.-+-+.++ T Consensus 47 ~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~~v~~A~~~~~ 93 (544) T PRK07064 47 ARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVEALTAGT 93 (544) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 39789999999999999799889998055479989999999986688 No 129 >COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Probab=30.43 E-value=32 Score=13.53 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=100.5 Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 70588999999999999879998729999999999766648999986311599899999999999749865469999999 Q gi|254780512|r 477 PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILES 556 (692) Q Consensus 477 vvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEa 556 (692) -++.+..++--..++++.++...=- ..+..+.+.++...-.|++. .|..+|++.+.+.+.+ ....=..-|.+..+.. T Consensus 17 ~i~Ga~~ia~~~~eal~~~~~~~~~-~~~~~l~~~i~~~~~~L~k~-~P~~~Sl~n~~r~v~~-~~~~~~~~~~~~~~~~ 93 (301) T COG1184 17 EIRGASWIAIAAAEALEILASDSQA-PTVEELIDAIRELSETLVKA-RPTAVSLGNLIRFVLR-DSSGGDKENRRQSLIK 93 (301) T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHC-CCCCEEHHHHHHHHHH-CCCCCCHHHHHHHHHH T ss_conf 2036689999999999998630355-53899999999988889862-8860249999999986-0565544567899998 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCC--HHHHHHHHHHH Q ss_conf 9875335799899999999998999865207788489998887899999998303777884645669--88999999999 Q gi|254780512|r 557 IAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVE--PRAVEMFSENA 634 (692) Q Consensus 557 Lad~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~--P~~~~~l~~~i 634 (692) .+ ++-....|..++.++-.=..+..+..++-....+....+.+..+-..... +.=+..| |... = T Consensus 94 ~~------~~~i~~~~~a~~~ia~~~a~~i~dg~vIlTh~~S~~v~~~l~~A~~~~k~--~~V~VtESRP~~e------G 159 (301) T COG1184 94 AA------QEFIDRVEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKR--FKVIVTESRPRGE------G 159 (301) T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCCCH------H T ss_conf 68------99999999988789999886245898799834718999999986641885--4999972788623------7 Q ss_pred HHHHHHHHHCCCCEEEEECHHHHHHHHHH Q ss_conf 99999999569987998283354899999 Q gi|254780512|r 635 TNSIRQYIDKGIPLTIVTLPEIRSYIRMI 663 (692) Q Consensus 635 ~~~~~~~~~~g~~pVLl~s~~iRr~lr~l 663 (692) +.-.+.+.+.|.++.+++-...+.++++- T Consensus 160 ~~~ak~L~~~gI~~~~I~Dsa~~~~~~~v 188 (301) T COG1184 160 RIMAKELRQSGIPVTVIVDSAVGAFMSRV 188 (301) T ss_pred HHHHHHHHHCCCCEEEEECHHHHHHHHHC T ss_conf 99999999749955998515889999748 No 130 >PRK08527 acetolactate synthase 3 catalytic subunit; Validated Probab=30.38 E-value=32 Score=13.52 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=27.7 Q ss_pred HHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH Q ss_conf 973998899999989998---------64578885158999873310 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLS---------VGDGLVSQVPALIISLSAAF 264 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LT---------IGDGLVsQIPaLliS~aaGi 264 (692) ..|-.+.+-++.-|+..| -|=|.-.-++++.-+-+.+. T Consensus 48 ~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~~i~~A~~~~~ 94 (560) T PRK08527 48 VRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLATAYMDSI 94 (560) T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 39689999999999999789989997536589999999999997599 No 131 >TIGR02797 exbB tonB-system energizer ExbB; InterPro: IPR014164 This entry describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterised are involved in siderophore transport across the outer membrane.. Probab=30.35 E-value=27 Score=14.09 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=17.7 Q ss_pred CCHHHHHH--HHHCCCEEECHHHHHHHHHHHHHHHHH Q ss_conf 39788458--882899070588999999999999879 Q gi|254780512|r 462 IMESFSDD--LRRQGFHPIDNLAVVLTHLSEVIRNNL 496 (692) Q Consensus 462 I~~~~~~~--a~~~G~tvvdp~~ViatHl~evir~~a 496 (692) +.|.-.|- |-+.|..-==|.-||.-|+.+-+..|- T Consensus 161 VAPGIAEALLATA~GLVAAIPAVvIYN~faR~i~~y~ 197 (213) T TIGR02797 161 VAPGIAEALLATALGLVAAIPAVVIYNVFARSIAGYR 197 (213) T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3523789999999889988548988865875699999 No 132 >TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771 This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process. Probab=30.34 E-value=14 Score=16.17 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=7.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999766648 Q gi|254780512|r 503 KDVKNLISRLDPEYQ 517 (692) Q Consensus 503 qEvq~LLd~L~~~~P 517 (692) ++-|.|+..-+++.+ T Consensus 727 ~~LkeLi~~yr~~~~ 741 (1384) T TIGR02025 727 RELKELIAEYRELPS 741 (1384) T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999998403770 No 133 >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Probab=29.94 E-value=32 Score=13.47 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=42.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999997666489999863115998999999999997498654699999999875335799899999999998999 Q gi|254780512|r 502 YKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQ 581 (692) Q Consensus 502 ~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~ 581 (692) ++|.+.|=+.++.....+..+-. . ......+.+.++|++.|++=.=.+.|++.+ ....++...-.+++..|.+. T Consensus 125 ~~El~~lr~~l~~~~~~~~~~~~-~-~~~p~~~~l~~~L~~~Gvs~~la~~l~~~~----~~~~~~~~~~~~l~~~L~~~ 198 (412) T PRK05703 125 RKELAELKELLEHQLSMLAWEKL-E-RIPPEFAKLYKRLKESGLSPEIADKLLKLL----LEDMNPREAWRYLLELLANM 198 (412) T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-C-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHH T ss_conf 99999999999999864101222-3-488789999999998699999999999986----64289799999999999975 Q ss_pred HH Q ss_conf 86 Q gi|254780512|r 582 IC 583 (692) Q Consensus 582 I~ 583 (692) |- T Consensus 199 l~ 200 (412) T PRK05703 199 LP 200 (412) T ss_pred CC T ss_conf 78 No 134 >PRK04040 adenylate kinase; Provisional Probab=29.86 E-value=22 Score=14.74 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=44.9 Q ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHH Q ss_conf 15998999999999997498654699999999875335799899999999998999865207788489998887899999 Q gi|254780512|r 526 SHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIF 605 (692) Q Consensus 526 ~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~g~L~vi~L~p~lE~~l 605 (692) +++|+. .|+=||++..|+|.= +..=--.++|--+..|.|.-- =..|-....+.+.|+. .+.+..+-++.+ T Consensus 56 RkL~~~-~q~~lQ~~Aa~~I~~--~~~~~~ViIDTHa~Iktp~Gy----lpGLP~~Vl~~L~P~~---ivlieA~P~eIl 125 (189) T PRK04040 56 RKLPLE-EQKELQREAAERIAE--MAGEGPVIVDTHATIKTPGGY----LPGLPEWVLEELNPDV---IVLIEADPDEIL 125 (189) T ss_pred CCCCHH-HHHHHHHHHHHHHHH--HCCCCCEEEECCCCCCCCCCC----CCCCCHHHHHHCCCCE---EEEEECCHHHHH T ss_conf 479999-999999999999998--357872899445200268867----7899899998669988---999975889999 Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCEEEEECHH Q ss_conf 9983037778846456698899999999999999-9995699879982833 Q gi|254780512|r 606 YQAIQRDSKGECVDFNVEPRAVEMFSENATNSIR-QYIDKGIPLTIVTLPE 655 (692) Q Consensus 606 ~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~-~~~~~g~~pVLl~s~~ 655 (692) ....+.+.... + ..+++..+.-++--+.... -....|.+.-++-+.+ T Consensus 126 ~RR~~D~tR~R--D-~es~~~I~~hq~~nR~~a~ayavltga~Vkiv~N~e 173 (189) T PRK04040 126 MRRLRDPTRRR--D-VETEESIEEHQEMNRAAAMAYAVLTGATVKIVENHE 173 (189) T ss_pred HHHHCCCCCCC--C-CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC T ss_conf 98842556689--8-788999999999999999999997398489997899 No 135 >TIGR00786 dctM TRAP transporter, DctM subunit; InterPro: IPR004681 DctM subunit Tripartite ATP-independent Periplasmic Transporter (TRAP-T) family permeases generally consist of three components, and these systems have so far been found in a diverse range of prokaryotes, both bacteria and archaea, but not in eukaryotes . Only one member of the family has been both sequenced and functionally characterised. This system is the DctPQM system of Rhodobacter capsulatus . DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterised. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. A conserved family of immunogenic extracytoplasmic proteins is shown to be invariably associated with TRAP systems that contain a large DctQM fusion protein. All of the currently known archaeal systems are of this type. TRAP transporters are a widespread and ancient type of solute uptake system that transport a potentially diverse range of solutes and most likely evolved by the addition of auxiliary proteins to a single secondary transporter . ; GO: 0016021 integral to membrane. Probab=29.78 E-value=32 Score=13.45 Aligned_cols=219 Identities=15% Similarity=0.211 Sum_probs=116.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 000100134589999999999996038478999999999--999999999995137704542004899999999985548 Q gi|254780512|r 11 SNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASS--IALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNI 88 (692) Q Consensus 11 ~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~n--i~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~Lni 88 (692) .++++.-.|.+.+.-.=+-..=.++| |=..=+.++.- -..|+-=|..+ ..+|-+|+...+.-...++ T Consensus 115 m~~~GYp~~~a~g~i~~sg~ig~lIP--PSi~~Iiygv~~~~~vSi~~LF~A---------G~~PG~L~al~~m~~~~~~ 183 (421) T TIGR00786 115 MTKAGYPKAFAAGVIAASGIIGLLIP--PSIVMIIYGVASIAGVSIAKLFIA---------GILPGLLLALSLMLTIWFV 183 (421) T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH T ss_conf 97368898887799997886201147--708999999876765439999999---------7488999999999999999 Q ss_pred HHHHHHHHCCCCC----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHH Q ss_conf 8888988437777----632678999875145013269999999999999998864575146665545442037603454 Q gi|254780512|r 89 ATTRAILSFGHEG----YGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMA 164 (692) Q Consensus 89 asTRlIL~~g~~g----~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMa 164 (692) |.+|---..-.+- .+---++-++|++-+ -..++|+.|+=. T Consensus 184 A~r~~~~~~~~~~evr~~a~~~q~~~~~~~s~--------waL~Lpv~iIgG---------------------------- 227 (421) T TIGR00786 184 AKRLGYPRAEADAEVRRKASLRQRLRAFRKSI--------WALLLPVLIIGG---------------------------- 227 (421) T ss_pred HHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHH---------------------------- T ss_conf 97518999878813304677899999998655--------799999999999---------------------------- Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH Q ss_conf 7878764899989999999999865222201220134530105899999999988899999-997399889999998999 Q gi|254780512|r 165 IDADLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIG-CFRYDMSIHHAADVFVRL 243 (692) Q Consensus 165 IDaDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG-~~q~gm~~~eA~~~Yt~L 243 (692) ++.|+-|+-||= .+-.++.+++| ..+++|.+.+..+..-- T Consensus 228 ----i~~GifTPTEaa----------------------------------ava~~Yal~ls~~~yr~lt~k~l~~~~l~- 268 (421) T TIGR00786 228 ----IFSGIFTPTEAA----------------------------------AVAAVYALILSTFVYRELTLKSLCDVLLE- 268 (421) T ss_pred ----HHHHHCCHHHHH----------------------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHH- T ss_conf ----888632688999----------------------------------99999999999999842359999999999- Q ss_pred HHHHHHHHHHHHHHHHHHHH--HEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 86457888515899987331--0266237743058999998761864899999999998615786478999999999 Q gi|254780512|r 244 SVGDGLVSQVPALIISLSAA--FLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFF 318 (692) Q Consensus 244 TIGDGLVsQIPaLliS~aaG--iiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l 318 (692) =.-.+=+=.|+++.|++ -..|+..-.+.+++-+.+-..+.-.-+.+.-.+++..|++..++-..|+..-..+ T Consensus 269 ---s~~~~s~v~li~~~a~~~~~~~~~~~~P~~~~~~l~~~~~sp~~~l~~~n~~Ll~~G~fmD~~~~~l~~~P~l~ 342 (421) T TIGR00786 269 ---SLRTTSMVLLIIAGATVFSWLLTHEQIPQRLADLLAAAISSPIVFLIIINILLLIVGMFMDLTPAILILTPILL 342 (421) T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf ---88999999999999998777862302479999999721767049999999999984021156689999850699 No 136 >TIGR02434 CobF precorrin-6A synthase (deacetylating); InterPro: IPR012797 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobF precorrin-6A synthase (2.1.1.152 from EC), a pathway-specific enzyme in the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, the extruded acyl group is then removed in the subsequent step, which also sees a methyl group added at C-1 in a reaction catalysed by CobF. The product of this reaction is precorrin-6A, which is subsequently reduced by an NADH-dependent reductase to precorrin-6B . This entry identifies CobF in high GC Gram-positive, alphaproteobacteria and pseudomonas-related species.. Probab=29.77 E-value=32 Score=13.45 Aligned_cols=10 Identities=20% Similarity=0.674 Sum_probs=5.5 Q ss_pred HHHHHHHHHH Q ss_conf 9899986520 Q gi|254780512|r 577 RMAQQICGDL 586 (692) Q Consensus 577 aL~R~I~~~~ 586 (692) +|+|+||++| T Consensus 44 ~lRr~I~~r~ 53 (259) T TIGR02434 44 ELRREICERY 53 (259) T ss_pred HHHHHHHHHH T ss_conf 9999999871 No 137 >pfam00681 Plectin Plectin repeat. This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen. Probab=29.41 E-value=33 Score=13.41 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=27.3 Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 44203760345478787648999899999999 Q gi|254780512|r 153 FTLDAIPGKQMAIDADLSSGLIEEEEAKRRRK 184 (692) Q Consensus 153 FtLDamPGKQMaIDaDl~aG~I~~~eA~~rR~ 184 (692) +-.|-.-|+.|+++--++.|+||++-|++-.+ T Consensus 12 GiidP~tg~rlsv~~A~~~glid~~~a~~L~~ 43 (45) T pfam00681 12 GIIDPETGERLSVEEAVRRGLIDPETAQKLLE 43 (45) T ss_pred CCCCCCCCCEECHHHHHHCCCCCHHHHHHHHH T ss_conf 82789999881899999969949999999996 No 138 >pfam07680 DoxA TQO small subunit DoxA. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in terminal quinol oxidase from Bacteroides thetaiotaomicron. Probab=28.42 E-value=33 Score=13.36 Aligned_cols=30 Identities=27% Similarity=0.655 Sum_probs=21.3 Q ss_pred HHCCCCC-----CEEEEECCCCCCCEEEEEECCEE Q ss_conf 8098788-----32445437789871699974824 Q gi|254780512|r 393 QYGFIVP-----EIKVTTDISLPEKGYTIRVYGTT 422 (692) Q Consensus 393 elG~~iP-----~IrIrDn~~L~~~~Y~I~I~Gv~ 422 (692) .+|+.+| .+.+..+..|++++|.+++...- T Consensus 89 ~~gl~vpLGskAti~L~l~~~Lp~GtY~lkL~d~s 123 (133) T pfam07680 89 GHGLVVPLGSEATITLNLPMHLPPGTYEVKLYDPA 123 (133) T ss_pred CCEEEEECCCCEEEEECCCCCCCCCEEEEEEECCC T ss_conf 60299974784599953887679964999997478 No 139 >pfam02447 GntP_permease GntP family permease. This is a family of integral membrane permeases that are involved in gluconate uptake. E. coli contains several members of this family including GntU a low affinity transporter and GntT, a high affinity transporter. Probab=28.38 E-value=34 Score=13.28 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 99999999999999513770454200489999999998554888889884377776326789998751450132699999 Q gi|254780512|r 47 ASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLV 126 (692) Q Consensus 47 ~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~v 126 (692) .+=+++.++++++.- .....|-++++.+-++-|.....-+..+= .+-+.||+-.- -+|++ T Consensus 5 ~~~i~I~~li~li~k-----~KlhpFlaLl~~s~~~gl~~G~~~~~~~~-----------~i~~GfG~tlg----~igiv 64 (441) T pfam02447 5 IVAIGVILLLLLIIK-----FKVNPFVALLLVSLGVGLASGMPLDKVVK-----------SIEAGFGGTLG----SLAII 64 (441) T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCHHHHHH-----------HHHHHHHHHHH----HHHHH T ss_conf 999999999999999-----82229999999999999972999999999-----------99998989989----99999 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 999999999988645751466655 Q gi|254780512|r 127 VFMILITINFIVITKGATRIAEVG 150 (692) Q Consensus 127 iF~Il~ivqfiVItkGa~RvaEV~ 150 (692) |.+=-++=+++--|.||+|+|+.- T Consensus 65 I~lG~iiG~~Le~SGaa~~IA~~i 88 (441) T pfam02447 65 IGLGAMLGKLLADSGGAERIATTL 88 (441) T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999839199999999 No 140 >pfam11630 DUF3254 Protein of unknown function (DUF3254). This family of proteins is most likely a family of anti-lipopolysaccharide factor proteins however this cannot be confirmed. Probab=28.35 E-value=34 Score=13.28 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=5.4 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9987299999999 Q gi|254780512|r 497 SQLLSYKDVKNLI 509 (692) Q Consensus 497 ~ellg~qEvq~LL 509 (692) +.|++.+|.+.+| T Consensus 84 ~gLiTeedA~~wL 96 (97) T pfam11630 84 AGLITEEEANAWL 96 (97) T ss_pred CCCCCHHHHHHHH T ss_conf 4886598998864 No 141 >PRK10921 twin-arginine protein translocation system subunit TatC; Provisional Probab=28.02 E-value=35 Score=13.24 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=42.8 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 97399889999998999864578885158999873310266237743058999998761864899999999998615786 Q gi|254780512|r 227 FRYDMSIHHAADVFVRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNL 306 (692) Q Consensus 227 ~q~gm~~~eA~~~Yt~LTIGDGLVsQIPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGm 306 (692) .+--.++++=.+....+..+=|++=|+|-+++-.+--=++| .+++.++.|-.++...++ +.-+=|.= T Consensus 145 ~~~~~~i~~y~~f~~~~~l~fGl~FqlPli~~~L~~~glv~------------~~~l~~~Rr~~~v~~~il-aA~iTPpD 211 (255) T PRK10921 145 VQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITT------------PEDLRKKRPYVLVGAFVV-GMLLTPPD 211 (255) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHHHHHHHH-HHHCCCCC T ss_conf 56435099999999999999999999899999999917889------------999998739998999999-97358993 Q ss_pred H Q ss_conf 4 Q gi|254780512|r 307 P 307 (692) Q Consensus 307 P 307 (692) | T Consensus 212 ~ 212 (255) T PRK10921 212 V 212 (255) T ss_pred H T ss_conf 7 No 142 >COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown] Probab=27.78 E-value=22 Score=14.75 Aligned_cols=24 Identities=17% Similarity=0.251 Sum_probs=15.9 Q ss_pred CCCHHHHHHHHHHHHHH-HHHHHHH Q ss_conf 78647899999999999-9998864 Q gi|254780512|r 304 PNLPAFPFIMLGGFFAC-AGFYVPY 327 (692) Q Consensus 304 PGmP~~~Fl~la~~l~~-~a~~~~r 327 (692) -|||....+-+++++.+ ..|-... T Consensus 3 ~~f~~~il~~l~A~L~c~ss~~v~~ 27 (303) T COG4714 3 MGFRMKILIKLTALLLCGSSWHVNA 27 (303) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 5347899999999997437664047 No 143 >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A Probab=27.68 E-value=22 Score=14.71 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=21.2 Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9899999999999749865469999999 Q gi|254780512|r 529 SYSGIQAVLKLLLAEHVSIRNLPLILES 556 (692) Q Consensus 529 ~l~~i~~VLq~LL~E~VsIRdlr~IlEa 556 (692) -.|++.+|.+-|-+++|+||++ +|.|+ T Consensus 8 rpG~L~~v~~~L~~~~InI~al-si~dt 34 (56) T cd04889 8 KPGRLAEVTEILAEAGINIKAI-SIAET 34 (56) T ss_pred CCCHHHHHHHHHHHCCCCEEEE-EEECC T ss_conf 9851999999999879987997-62025 No 144 >PRK11083 DNA-binding response regulator CreB; Provisional Probab=27.62 E-value=29 Score=13.82 Aligned_cols=105 Identities=9% Similarity=0.059 Sum_probs=67.1 Q ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCH----- Q ss_conf 90705889999999999998799987299999999997666489999863115998999999999997--49865----- Q gi|254780512|r 475 FHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLA--EHVSI----- 547 (692) Q Consensus 475 ~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~--E~VsI----- 547 (692) .-+||....+...+.+.++.+-++.....+.+.-++.+++..|.|| ++--.+|-..=.++++.+=+ ..+|| T Consensus 6 ILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~Dlv--ilDi~LP~~~G~~l~~~iR~~~~~~pII~lta 83 (229) T PRK11083 6 ILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLV--ILDVGLPDISGFELCRQLRAFHPALPVIFLTA 83 (229) T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEE--EECCCCCCCCHHHHHHHHHHHCCCCEEEEEEC T ss_conf 9999699999999999999889999998999999999971899899--97388999876889999997089972999836 Q ss_pred -HHHHHHHHHH---H-HHHCCCCCHHHHHHHHHHHHHHH Q ss_conf -4699999999---8-75335799899999999998999 Q gi|254780512|r 548 -RNLPLILESI---A-EVAPHSRKTSHIVEQVRIRMAQQ 581 (692) Q Consensus 548 -Rdlr~IlEaL---a-d~a~~~kD~~~LtE~VR~aL~R~ 581 (692) .+....++++ | ||-.+-=++..|...+|..|+|. T Consensus 84 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR~ 122 (229) T PRK11083 84 RSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (229) T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 789899999997599877308742899999999999764 No 145 >pfam05977 DUF894 Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. Probab=27.42 E-value=35 Score=13.16 Aligned_cols=30 Identities=20% Similarity=0.494 Sum_probs=18.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 763267899987514501326999999999999 Q gi|254780512|r 101 GYGAAGGIIAGFSSLVMSGDFVIGLVVFMILIT 133 (692) Q Consensus 101 g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~i 133 (692) ||+-+|=+|.+||. +.-|.+-.+-|+-++. T Consensus 155 GPAlgG~Lia~~G~---~~~F~lnAlSyl~~i~ 184 (524) T pfam05977 155 GPALGGLLVAAFGA---ATAFAVNALSYFAVIV 184 (524) T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH T ss_conf 88999999997726---9999999999999999 No 146 >PRK01636 ccrB camphor resistance protein CrcB; Provisional Probab=27.31 E-value=36 Score=13.15 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=23.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999998889999999739988999999899986457888 Q gi|254780512|r 211 IIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVS 251 (692) Q Consensus 211 iiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVs 251 (692) +=..+||++|-+.+|.... .-.....+.+..+-+|-|... T Consensus 19 ~~Tf~vNv~G~FliGll~~-l~~~~~~~~~~~l~l~TGf~G 58 (118) T PRK01636 19 LDIFVANVVAAFLLGLTTS-LFKKDKISQYVHLMIGTGIMG 58 (118) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHC T ss_conf 9999999999999999999-998177999999999976605 No 147 >PRK13460 F0F1 ATP synthase subunit B; Provisional Probab=27.21 E-value=35 Score=13.21 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999998615786478999999999999998864 Q gi|254780512|r 292 ISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPY 327 (692) Q Consensus 292 iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r 327 (692) .++--+..+++=||.-.|.++.+..+++.++++.++ T Consensus 4 ~a~~~~~~l~~n~~~~iw~~i~F~il~~il~kf~~~ 39 (173) T PRK13460 4 LAAKGLSLLDVNPGLVVWTLVTFLVVVLVLKKFAWD 39 (173) T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 570567758898779999999999999999999688 No 148 >PRK09174 F0F1 ATP synthase subunit B'; Validated Probab=27.20 E-value=36 Score=13.14 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=9.3 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999899986520 Q gi|254780512|r 567 TSHIVEQVRIRMAQQICGDL 586 (692) Q Consensus 567 ~~~LtE~VR~aL~R~I~~~~ 586 (692) ...-.|.-|..+-..|..+. T Consensus 132 a~~~~e~~~a~~ea~L~~ki 151 (204) T PRK09174 132 AKAKAEAERAEIEASLEKKL 151 (204) T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999 No 149 >pfam05628 Borrelia_P13 Borrelia membrane protein P13. This family consists of P13 proteins from Borrelia species. P13 is a 13kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism. Probab=27.10 E-value=18 Score=15.35 Aligned_cols=23 Identities=39% Similarity=0.756 Sum_probs=8.8 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 53010589999999998889999 Q gi|254780512|r 202 FVRGDAIASIIITAINIVGGIVI 224 (692) Q Consensus 202 FVkGDAiAgiiI~~iNiigG~~i 224 (692) ||+||-|-|-.+.--|++|+..+ T Consensus 61 fvQGDyiGGg~vLGf~~lG~~L~ 83 (165) T pfam05628 61 FVQGDYIGGGAVLGFQLLGGILI 83 (165) T ss_pred HCCCCEECCCEEEEHHHHHHHHH T ss_conf 20154436722554577766886 No 150 >PRK10161 transcriptional regulator PhoB; Provisional Probab=26.80 E-value=19 Score=15.27 Aligned_cols=105 Identities=13% Similarity=0.130 Sum_probs=69.0 Q ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCCH--- Q ss_conf 907058899999999999987999872999999999976664899998631159989999999999974----9865--- Q gi|254780512|r 475 FHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAE----HVSI--- 547 (692) Q Consensus 475 ~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E----~VsI--- 547 (692) .-+||...-+...+.+.++++-++-..-.+.+..++.+++.+|.|+ ++.-.+|-..=-++++.+=++ .+|| T Consensus 5 ILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~Dli--ilDi~lP~~dG~~~~~~ir~~~~~~~~PII~l 82 (229) T PRK10161 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLI--LLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82 (229) T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEE--EEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE T ss_conf 9999599999999999999779999998999999999852899899--99789988763358788775024689758999 Q ss_pred ------HHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf ------4699999999-875335799899999999998999 Q gi|254780512|r 548 ------RNLPLILESI-AEVAPHSRKTSHIVEQVRIRMAQQ 581 (692) Q Consensus 548 ------Rdlr~IlEaL-ad~a~~~kD~~~LtE~VR~aL~R~ 581 (692) .|...=||.= -||-.+-=++..|...+|..|+|. T Consensus 83 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~ 123 (229) T PRK10161 83 TARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229) T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC T ss_conf 55666577999987698765208999899999999997123 No 151 >PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed Probab=26.70 E-value=36 Score=13.08 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=11.4 Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 7998283354899999886448981894 Q gi|254780512|r 648 LTIVTLPEIRSYIRMILERNFPSLAVLS 675 (692) Q Consensus 648 pVLl~s~~iRr~lr~lle~~~p~l~VLS 675 (692) |+.++|..++++++.++++..+..++.| T Consensus 91 p~~IvS~G~d~~I~~~L~~~~~~~~I~a 118 (219) T PRK09552 91 SFYVISGGMDFFVYPLLQGLIPKEQIYC 118 (219) T ss_pred CEEEECCCCHHHHHHHHHHCCCCCCEEE T ss_conf 7999879946999999996088774896 No 152 >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Probab=26.67 E-value=36 Score=13.07 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=31.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999999749865469999999987533579989999999999899986 Q gi|254780512|r 533 IQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQIC 583 (692) Q Consensus 533 i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~ 583 (692) -..++|+|++.+++=.-.+.++|.+ +...|.+..-+.++..|.+.+- T Consensus 118 ~~~l~~~L~~~g~~~~la~~l~~~l----~~~~~~~~~~~~~~~~l~~~l~ 164 (404) T PRK06995 118 RGALFRHLLAAGFSAQLVRMLLENL----PAGDDAQAAMDWARSVLASNLP 164 (404) T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHCC T ss_conf 9999999998799999999999847----0338978999999999997466 No 153 >pfam07514 TraI_2 Putative helicase. Some members of this family have been annotated as helicases. Probab=26.47 E-value=37 Score=13.05 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=12.0 Q ss_pred HHHHHHHHHHCCCCCCEEEEE Q ss_conf 999999998098788324454 Q gi|254780512|r 385 KIRRKFAVQYGFIVPEIKVTT 405 (692) Q Consensus 385 ~iRk~la~elG~~iP~IrIrD 405 (692) ..=-.+..|+|=++-.++|.+ T Consensus 107 v~~aaL~HDiGK~~~Dl~V~~ 127 (326) T pfam07514 107 AFYAALLHDLGKPLVDLEVED 127 (326) T ss_pred HHHHHHHHHCCCCEEEEEEEE T ss_conf 999999724167400268993 No 154 >PRK02944 OxaA-like protein precursor; Validated Probab=26.37 E-value=37 Score=13.03 Aligned_cols=88 Identities=13% Similarity=0.341 Sum_probs=47.7 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 78999875145013269999999999999998864----57514666554544203760345478787648999899999 Q gi|254780512|r 106 GGIIAGFSSLVMSGDFVIGLVVFMILITINFIVIT----KGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAKR 181 (692) Q Consensus 106 G~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVIt----kGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~I~~~eA~~ 181 (692) .+.|+-|++ ..||||.+++++|.|++=+=.+-.+ |-+.|..|. --+-=.|.+..++. |+++-++ T Consensus 45 ~~~i~~~a~-~~g~~yGlaIIl~TiiVRlillPL~~kq~ks~~kMq~l---------qPe~~~Iq~Ky~~k--d~~~~qk 112 (255) T PRK02944 45 SQLITYFAN-LFGSNYGLAIIVVTLLIRLAILPLMIKQTKSTKAMQAL---------QPEMVKLKEKYSSK--DQATQQK 112 (255) T ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHCCC--CHHHHHH T ss_conf 999999998-64971999999999999999998899999999999884---------86799999986589--7678999 Q ss_pred HHH---HHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHH Q ss_conf 999---9986522220122013453010589999999998 Q gi|254780512|r 182 RRK---ELEEESAFFGAMDGASKFVRGDAIASIIITAINI 218 (692) Q Consensus 182 rR~---~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNi 218 (692) ..+ ++-+|.. .+= .+|++-.+|.+ T Consensus 113 ~qqE~~~Lykk~g-------vnP------~~GCLP~LIQ~ 139 (255) T PRK02944 113 LQQEMMQLYQKNG-------VNP------LAGCLPIFIQM 139 (255) T ss_pred HHHHHHHHHHHCC-------CCC------HHHHHHHHHHH T ss_conf 9999999999839-------994------68889999999 No 155 >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Probab=26.21 E-value=37 Score=13.01 Aligned_cols=24 Identities=0% Similarity=0.040 Sum_probs=9.4 Q ss_pred HHHHEEEECCCCCCHHHHHHHHHH Q ss_conf 331026623774305899999876 Q gi|254780512|r 261 SAAFLVSRTTSKGSTNTAIVEQLS 284 (692) Q Consensus 261 aaGiiVTRvss~~~lg~~i~~Ql~ 284 (692) .-.++++-..-.+--|-++.+++- T Consensus 48 ~~DlvllDi~mP~~~Glell~~ir 71 (457) T PRK11361 48 HPDVVLMDIRMPEMDGIKALKEMR 71 (457) T ss_pred CCCEEEEECCCCCCCHHHHHHHHH T ss_conf 989999828799999999999998 No 156 >pfam05313 Pox_P21 Poxvirus P21 membrane protein. The P21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localize on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that P21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene). Probab=25.96 E-value=37 Score=12.98 Aligned_cols=74 Identities=12% Similarity=0.307 Sum_probs=56.2 Q ss_pred HHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 51589998733102662377430589999987618648999999999986157---864789999999999999988644 Q gi|254780512|r 252 QVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMP---NLPAFPFIMLGGFFACAGFYVPYK 328 (692) Q Consensus 252 QIPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvP---GmP~~~Fl~la~~l~~~a~~~~r~ 328 (692) -.|||.|.-+..+=..+.++..+.|-.|. ...++.+...+--+. |+-++....++.+++.-++.+.|. T Consensus 94 P~PsLVIaYCl~~qi~~~~~~~~vgMsIv---------cv~~sivti~~~svs~S~~a~ti~yiiL~vLf~~Yafnit~~ 164 (190) T pfam05313 94 PFPSLVIAYCLSMQIINPGNGNTIGMSIL---------CVLASIVTIYVTSVSASKTAYTISYIILAVLFCIYAFNITRI 164 (190) T ss_pred CCHHHHHHHHHHHHEECCCCCCCHHHHHH---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 73199999999872046888761017799---------999999999987521312689999999999999998631040 Q ss_pred HHHHHH Q ss_conf 322221 Q gi|254780512|r 329 NELQRL 334 (692) Q Consensus 329 ~~~~~~ 334 (692) ...+.. T Consensus 165 ~~~~s~ 170 (190) T pfam05313 165 SKVRSS 170 (190) T ss_pred HHHCCC T ss_conf 121257 No 157 >TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response. Probab=25.86 E-value=38 Score=12.97 Aligned_cols=111 Identities=12% Similarity=0.164 Sum_probs=49.5 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHH--------HHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCC Q ss_conf 498654699999999875335799899--------999999998999865207788489998887899999998303777 Q gi|254780512|r 543 EHVSIRNLPLILESIAEVAPHSRKTSH--------IVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSK 614 (692) Q Consensus 543 E~VsIRdlr~IlEaLad~a~~~kD~~~--------LtE~VR~aL~R~I~~~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~ 614 (692) -+.|-+..+.++.+|+--+=-+.|++. ++|.+|+=|+..+-=...+....+ +-.-.--+++|++.+ T Consensus 454 ~~~~~~~w~~li~~Li~~g~L~~~~~~GrPy~aL~~~~~~~~vl~~e~~V~l~~~k~~~------~~~GraGGGmrr~~~ 527 (607) T TIGR01389 454 KDLSQKEWRSLIDQLIAEGYLTENDEQGRPYSALQLTEAARKVLKNEVEVLLRPKKVVR------KEDGRAGGGMRRTAQ 527 (607) T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCC------CCCCCCCCCHHHHHH T ss_conf 67972789999988866246530645678652345651124454033110003310233------457875763012222 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECHHHHHHHHHHHH Q ss_conf 8846456698899999999999999999-56998799828335489999988 Q gi|254780512|r 615 GECVDFNVEPRAVEMFSENATNSIRQYI-DKGIPLTIVTLPEIRSYIRMILE 665 (692) Q Consensus 615 G~~~~l~l~P~~~~~l~~~i~~~~~~~~-~~g~~pVLl~s~~iRr~lr~lle 665 (692) ... +...++. +.|-+++++.-.++. ..|.||.++=+.. -|+.|.| T Consensus 528 ~~~--l~~~~d~-~~LF~~Lr~lR~~~A~~~~VPPYvIF~D~---TL~E~ae 573 (607) T TIGR01389 528 QKE--LSVEVDD-LALFEALRELRKELAQEENVPPYVIFSDS---TLREMAE 573 (607) T ss_pred HHC--CCCCHHH-HHHHHHHHHHHHHHHHHCCCCCEEECCCH---HHHHHHH T ss_conf 300--1244045-89999999999999986489928981845---7999997 No 158 >COG1536 FliG Flagellar motor switch protein [Cell motility and secretion] Probab=25.84 E-value=38 Score=12.97 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=28.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHCC Q ss_conf 7299999999997666489999863115998999----99999999749 Q gi|254780512|r 500 LSYKDVKNLISRLDPEYQKLAEETCSSHISYSGI----QAVLKLLLAEH 544 (692) Q Consensus 500 lg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i----~~VLq~LL~E~ 544 (692) +.+..-+.++|.++...|++.+++..+.-....+ .+.+|+||+|- T Consensus 214 ~d~~~e~~il~~l~~~~~~la~~I~~kmF~Fedi~~ldd~~iq~lL~~v 262 (339) T COG1536 214 LDRGTEKTILESLEEEDPELAEEIKEKMFVFEDIVLLDDRSIQRLLREV 262 (339) T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC T ss_conf 4466899999987632887899999987219988745689999999873 No 159 >TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413 This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane. Probab=25.84 E-value=24 Score=14.42 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=70.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH----------------HHCCCCHH Q ss_conf 99999999987999872999999999976664899998631159989999999999----------------97498654 Q gi|254780512|r 485 LTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLL----------------LAEHVSIR 548 (692) Q Consensus 485 atHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~L----------------L~E~VsIR 548 (692) +-|=+..++++++.|+|.-==-.|++.+ ....+..+++-.+|- +.++=++- T Consensus 364 ~lCNna~~~~~a~~llG~ptd~ALie~~-------------~~fgL~D~r~t~~r~~E~pFsS~rK~M~v~~~~~~~~~~ 430 (856) T TIGR01522 364 NLCNNAKFRNEADTLLGNPTDVALIELL-------------EKFGLEDLRETYKRVAEVPFSSERKWMAVKVVTDSKEMV 430 (856) T ss_pred HHHCCHHHCCCHHHCCCCHHHHHHHHHH-------------HHCCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCEE T ss_conf 4202202201012005873579999999-------------864898742100023213668644013566661787478 Q ss_pred HHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHCC--CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHH Q ss_conf 6999999998753357998999-999999989998652077--8848999888789999999830377788464566988 Q gi|254780512|r 549 NLPLILESIAEVAPHSRKTSHI-VEQVRIRMAQQICGDLAP--TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPR 625 (692) Q Consensus 549 dlr~IlEaLad~a~~~kD~~~L-tE~VR~aL~R~I~~~~~~--~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~ 625 (692) -++.=.|-+++|+..-.+-+-- |+..-++.+..|.+.-+. ..-|+++-+....+.-|- =.|= .. -.||- T Consensus 431 f~KGA~E~v~~yc~~Y~~~dG~kt~~Lt~~~k~~~~~~~~~Ma~~GLRv~A~A~~~~~~L~------F~GL-~G-~~DPP 502 (856) T TIGR01522 431 FVKGAYEQVLKYCTYYLKKDGKKTEELTEEQKEKIQEEAAEMASEGLRVIAFASGTEKDLV------FLGL-VG-INDPP 502 (856) T ss_pred EEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCE------EEEE-EC-CCCCC T ss_conf 8607510123345454405784115778999999989876320066646656522568715------7610-02-65922 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 9999999999999999956998799828 Q gi|254780512|r 626 AVEMFSENATNSIRQYIDKGIPLTIVTL 653 (692) Q Consensus 626 ~~~~l~~~i~~~~~~~~~~g~~pVLl~s 653 (692) + -+++++++++...|...+.+|- T Consensus 503 R-----p~V~~Av~~L~~gGV~v~MITG 525 (856) T TIGR01522 503 R-----PDVKEAVERLLTGGVRVIMITG 525 (856) T ss_pred C-----CCCHHHHHHHHHCCCEEEEECC T ss_conf 4-----8626899998428918999818 No 160 >TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent; InterPro: IPR004434 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Mitochondrial NAD-dependent isocitrate dehydrogenases (IDH) resemble prokaryotic NADP-dependent IDH and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent IDH. The mitochondrial NAD-dependent isocitrate dehydrogenase is believed to be an alpha(2)-beta-gamma heterotetramer. All subunits are homologous and belog to this group. The NADP-dependent IDH of Thermus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus. ; GO: 0004449 isocitrate dehydrogenase (NAD+) activity, 0006099 tricarboxylic acid cycle, 0005739 mitochondrion. Probab=25.71 E-value=37 Score=13.05 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=13.5 Q ss_pred EECHHHHHHHHHHHHHHHHHHHHH Q ss_conf 705889999999999998799987 Q gi|254780512|r 477 PIDNLAVVLTHLSEVIRNNLSQLL 500 (692) Q Consensus 477 vvdp~~ViatHl~evir~~a~ell 500 (692) ||++.-|++..-+|=|-|+|-||= T Consensus 143 VVESlK~iT~~~seRIA~yAFeyA 166 (348) T TIGR00175 143 VVESLKVITREKSERIARYAFEYA 166 (348) T ss_pred EEEECHHHHHHHHHHHHHHHHHHH T ss_conf 256102010245788999999999 No 161 >COG5592 Uncharacterized conserved protein [Function unknown] Probab=25.70 E-value=38 Score=12.95 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=58.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9997666489999863115998999999999997----498654699999999875335799899999999998999865 Q gi|254780512|r 509 ISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLA----EHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICG 584 (692) Q Consensus 509 Ld~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~----E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~ 584 (692) ++.+.+.+-.+ +|.+ .-|...=.++.+.-.. |+=+|+|.....|++++.-.+.++|+..-|+++.-.+-..-| T Consensus 37 ~~k~~k~h~e~-Ee~i--lF~v~Vd~~~ed~~~fkdt~~~~~i~~DHkliE~l~tnlik~kR~~k~~e~~p~fyK~LtdH 113 (171) T COG5592 37 NEKLGKDHVEL-EEKI--LFPVIVDADMEDLYVFKDTPEVDRIKNDHKLIETLATNLIKWKRPDKIKERVPLFYKTLTDH 113 (171) T ss_pred HHHHHHHHHHH-HHHH--HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC T ss_conf 89875437889-8876--20210351798877541352233767458999999999986314258899999999999973 Q ss_pred HHCCCCEEEEEEECHHHHHH Q ss_conf 20778848999888789999 Q gi|254780512|r 585 DLAPTGILNILKLGNHWDMI 604 (692) Q Consensus 585 ~~~~~g~L~vi~L~p~lE~~ 604 (692) ..+.++.+. |.|+.. T Consensus 114 n~aEE~~If-----Prvks~ 128 (171) T COG5592 114 NLAEEEYIF-----PRVKSL 128 (171) T ss_pred CCCCCCHHH-----HHHHHH T ss_conf 444310255-----888860 No 162 >COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Probab=25.57 E-value=38 Score=12.93 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998889999999739988999999899986457888515899987 Q gi|254780512|r 209 ASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPALIISL 260 (692) Q Consensus 209 AgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQIPaLliS~ 260 (692) +.+++++.-.+-|..+|++ -|++-| ...-.+=-|=|-+.| |||||+++ T Consensus 101 ~allvt~~a~l~g~~lGi~-AG~t~g--l~s~~lnHilDt~lS-iPsLLlAi 148 (296) T COG4171 101 GALLVTLAATICGGVLGIF-AGATHG--LRSAVLNHILDTLLS-IPSLLLAI 148 (296) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHH-HHHHHHHH T ss_conf 3999999999999999999-977777--899999999999973-58999999 No 163 >COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion] Probab=25.57 E-value=38 Score=12.93 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=20.8 Q ss_pred CCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 5786478999999999-9999988644322221001 Q gi|254780512|r 303 MPNLPAFPFIMLGGFF-ACAGFYVPYKNELQRLAKV 337 (692) Q Consensus 303 vPGmP~~~Fl~la~~l-~~~a~~~~r~~~~~~~~~~ 337 (692) -|--|.+.|..+++++ .++||+...+.+.++.+.. T Consensus 19 Wpl~~rlv~~lL~~~~V~~lGy~f~~s~k~eel~~~ 54 (211) T COG3167 19 WPLAPRLVFCLLAVAAVLGLGYAFYLSGKLEELEEL 54 (211) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 200379999999999999999999854078889999 No 164 >PRK03612 spermidine synthase; Provisional Probab=25.46 E-value=38 Score=12.92 Aligned_cols=48 Identities=8% Similarity=0.060 Sum_probs=25.9 Q ss_pred EEEECCC---CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC--CCHHHHHHH Q ss_conf 2662377---430589999987618648999999999986157--864789999 Q gi|254780512|r 265 LVSRTTS---KGSTNTAIVEQLSHYPRALLISAFFMIVLSVMP--NLPAFPFIM 313 (692) Q Consensus 265 iVTRvss---~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvP--GmP~~~Fl~ 313 (692) +++|.-. +.+.+..+++ +.+.-..=.+.|++++.|-++| |+..-.|+. T Consensus 130 Ll~rl~~~~~~~~~~~~vg~-v~a~DylGaliGsl~f~flLlP~lGl~~~~~l~ 182 (516) T PRK03612 130 LLMRILQRGRDAHAGHNVAT-VLAADYLGALVGGLAFPFLLLPRLGLLRTAALT 182 (516) T ss_pred HHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999986220022246788-886764678899999999998763267899999 No 165 >pfam09922 DUF2154 Predicted membrane protein (DUF2154). This domain, found in various hypothetical prokaryotic proteins, has no known function. Probab=25.42 E-value=38 Score=12.91 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=34.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 86457888515899987331026623774305899999876186489999999999861578647899999999999999 Q gi|254780512|r 244 SVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGF 323 (692) Q Consensus 244 TIGDGLVsQIPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~ 323 (692) ..|...+--+|.+++-+.-=....| . . .....+++.|++++++.+++ +|.+-++.. +++.++++ T Consensus 21 ~~~~~~~l~~~l~li~~G~~~~~~~---~--~---------~~g~il~~iG~~~l~~~l~~-~~~~~~~~~-~~lI~~gi 84 (233) T pfam09922 21 NPGSLFLLIWGLLLIYLGYYRLKKR---H--F---------KLGNFLLIIGLILLLFSLLS-NNAVIFFWP-AALIYLGI 84 (233) T ss_pred CCCHHHHHHHHHHHHHEEEEEEECC---C--C---------CCCHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHH T ss_conf 5407899999999631034787514---5--3---------34565999999999999971-589999999-99999989 Q ss_pred HH Q ss_conf 88 Q gi|254780512|r 324 YV 325 (692) Q Consensus 324 ~~ 325 (692) .. T Consensus 85 ~~ 86 (233) T pfam09922 85 NL 86 (233) T ss_pred HH T ss_conf 85 No 166 >COG3827 Uncharacterized protein conserved in bacteria [Function unknown] Probab=25.38 E-value=38 Score=12.91 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999976664899998631 Q gi|254780512|r 508 LISRLDPEYQKLAEETCS 525 (692) Q Consensus 508 LLd~L~~~~P~LV~Elvp 525 (692) |-|||.++-|.|||++|- T Consensus 202 LqdWLDkNLPtLVErLVr 219 (231) T COG3827 202 LQDWLDKNLPTLVERLVR 219 (231) T ss_pred HHHHHHCCCHHHHHHHHH T ss_conf 999998133599999999 No 167 >TIGR03085 conserved hypothetical protein TIGR03085. This family, like Pfam family pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized. Probab=25.37 E-value=38 Score=12.91 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=6.3 Q ss_pred CCCHHHHHHHHHHHHH Q ss_conf 6698899999999999 Q gi|254780512|r 621 NVEPRAVEMFSENATN 636 (692) Q Consensus 621 ~l~P~~~~~l~~~i~~ 636 (692) .++|+..+.+-..++. T Consensus 116 ~l~~~~~~~Lw~~l~~ 131 (199) T TIGR03085 116 ELPPEHRDALWDALRK 131 (199) T ss_pred CCCHHHHHHHHHHHHH T ss_conf 6998999999999887 No 168 >PRK11056 hypothetical protein; Provisional Probab=25.31 E-value=38 Score=12.90 Aligned_cols=65 Identities=29% Similarity=0.327 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 8999999999999999999995137704542004899999999985---54888889884377776326789998751 Q gi|254780512|r 40 VLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLS---LNIATTRAILSFGHEGYGAAGGIIAGFSS 114 (692) Q Consensus 40 ~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~---LniasTRlIL~~g~~g~~~AG~vI~aFG~ 114 (692) .+|-+...+++..+.- +++. +...||.||-+=|+.+...|- ||-+- .+|-...++|-=.+..||. T Consensus 12 LlLaliaGl~~na~~s----~Lf~-s~VpFSiFP~IaLvlavyclyq~Yl~~~m-----~eg~p~~a~acFflG~f~y 79 (120) T PRK11056 12 LLLALIAGLSINGTFA----ALFS-SIVPFSVFPLIALVLAVYCLYQRYLNRPM-----PEGLPGLAAACFFLGVFLY 79 (120) T ss_pred HHHHHHHHHHHHHHHH----HHHC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHH T ss_conf 6999999885003269----9871-65510778999999999999999946888-----7777289999999999999 No 169 >TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding. Probab=25.20 E-value=39 Score=12.88 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.4 Q ss_pred HHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 102662377430589999987618648999999999986157864789999999 Q gi|254780512|r 263 AFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGG 316 (692) Q Consensus 263 GiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~ 316 (692) =|||||=-.+.-+-.+..+=|++.|-+-..++| ||-=.++--++-| T Consensus 43 ~lIv~RHEqNAaFMAqavGRlTGkpGV~lvTSG--------PG~sNL~TGl~TA 88 (553) T TIGR02418 43 ELIVVRHEQNAAFMAQAVGRLTGKPGVALVTSG--------PGVSNLVTGLLTA 88 (553) T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCCEEEEECC--------CCHHHHHHHHHEE T ss_conf 154132214589999998630599865998068--------8814467433101 No 170 >TIGR00739 yajC preprotein translocase, YajC subunit; InterPro: IPR003849 This entry describes proteins of unknown function.. Probab=25.02 E-value=39 Score=12.86 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999998864432222100 Q gi|254780512|r 310 PFIMLGGFFACAGFYVPYKNELQRLAK 336 (692) Q Consensus 310 ~Fl~la~~l~~~a~~~~r~~~~~~~~~ 336 (692) +++++...++..+|.+.|.++++..+. T Consensus 5 ~l~~lv~~~~~FYFl~~RPQ~K~~k~~ 31 (86) T TIGR00739 5 TLLPLVLIFLIFYFLIIRPQRKRRKAH 31 (86) T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 589999999999997049779888988 No 171 >TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; InterPro: IPR003526 This entry represents MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The ygbB protein is a putative enzyme of this type .; GO: 0008685 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process. Probab=24.85 E-value=39 Score=12.84 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=33.9 Q ss_pred CHHHHCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 012210111112---3457552688999999999998098788324454 Q gi|254780512|r 360 VELVLGSLVSNR---LLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTT 405 (692) Q Consensus 360 i~l~lg~li~l~---~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrD 405 (692) +--+-||-+..+ ...|.--|..+|..+|.++|+.|++.+-.|.|+- T Consensus 86 ~~~~~gy~~~N~D~tiia~~PKl~P~i~~mR~~iA~~L~i~~d~vnvKA 134 (159) T TIGR00151 86 LVKEKGYRIGNVDVTIIAQRPKLAPHIEAMRENIAELLGIPLDQVNVKA 134 (159) T ss_pred HHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 9985588045689999731898622268999999888468702113258 No 172 >PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Probab=24.83 E-value=39 Score=12.84 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=45.6 Q ss_pred CEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH Q ss_conf 3034397884588828990705889999999999998799987--------29999999999766 Q gi|254780512|r 458 PAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLL--------SYKDVKNLISRLDP 514 (692) Q Consensus 458 ~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ell--------g~qEvq~LLd~L~~ 514 (692) .|.-++|+.+++|+..|.+++|..==+.+.+...+++++.+=. +..|++.++.+... T Consensus 75 rAHGv~~~~~~~a~~~g~~viDaTCP~V~kvh~~v~~~~~~Gy~viiiG~~~HpEv~gi~g~~~~ 139 (281) T PRK12360 75 RSHGVSKKVYKDLTDKGLEVIDATCPFVKKIQNIVEEYYNKGYKIIIVGDPNHPEVIGINGWCND 139 (281) T ss_pred ECCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCC T ss_conf 89999989999999659987705181057999999999978997999716898776522135898 No 173 >TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family; InterPro: IPR005689 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane . The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Toc750, a core component of the Toc complex. This protein is deeply embedded in the outer membrane and forms the voltage-dependent translocation channel . Toc75 itself appears to be capable of at least some discrimination between substrate and non-substrate proteins, with recognition based on based on both conformational and electrostatic interactions. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane. Probab=24.78 E-value=39 Score=12.83 Aligned_cols=95 Identities=19% Similarity=0.252 Sum_probs=64.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHH Q ss_conf 9999999997666489999863115998999999999997-49865469999999987533579-989999999999899 Q gi|254780512|r 503 KDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLA-EHVSIRNLPLILESIAEVAPHSR-KTSHIVEQVRIRMAQ 580 (692) Q Consensus 503 qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~-E~VsIRdlr~IlEaLad~a~~~k-D~~~LtE~VR~aL~R 580 (692) ||--....+++++|-.=+++--|+.+|-.-.-+|.+.|-. .+|+.|.|..|.+++-+|-..+- |..+.+.. T Consensus 213 ~~~~~f~~~l~~~~~~~~~~a~~~lLP~~V~~E~~~~~~~q~~~~~R~LQ~~~~~v~~WY~~~GY~~AQVV~~------- 285 (768) T TIGR00992 213 KEKLEFTRRLEKRYKRRIAEARPCLLPQEVVDEVFGMLYGQGKVSARLLQEIRDRVQEWYHNEGYALAQVVNF------- 285 (768) T ss_pred CCCEEEEHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHCCCEEEEEECC------- T ss_conf 1231110001111011013056554873678899987540551006777778888863110057507787346------- Q ss_pred HHHHHHCCCCEEEEEEECHHHHHHHHH Q ss_conf 986520778848999888789999999 Q gi|254780512|r 581 QICGDLAPTGILNILKLGNHWDMIFYQ 607 (692) Q Consensus 581 ~I~~~~~~~g~L~vi~L~p~lE~~l~~ 607 (692) .++.-+|..-+...+-.+|++-.+ T Consensus 286 ---g~~~~~G~V~~~v~EG~~~~l~~~ 309 (768) T TIGR00992 286 ---GNLNTDGEVVLEVVEGDITNLQIQ 309 (768) T ss_pred ---CCCCCCCEEEEEEECCCEEEEEEE T ss_conf ---763776518999964712167899 No 174 >pfam01638 HxlR HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis. Probab=24.72 E-value=39 Score=12.82 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=40.1 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH-------------------HHHHHHHHHHHHHCCCCCH Q ss_conf 666489999863115998999999999997498654-------------------6999999998753357998 Q gi|254780512|r 513 DPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIR-------------------NLPLILESIAEVAPHSRKT 567 (692) Q Consensus 513 ~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIR-------------------dlr~IlEaLad~a~~~kD~ 567 (692) ..++.++-++ +|. +|-..+++-|+.|-++|+=-| ++..++++|.+|+.+--|+ T Consensus 18 ~~rF~el~~~-l~g-is~~vLs~rLk~L~~~gli~r~~~~~~p~~~eY~LT~~G~~l~pvl~~l~~W~~~~~~~ 89 (90) T pfam01638 18 PKRFSELKRA-LPG-ISQKMLTQRLRELEQDGIINREVYPEVPPKVEYSLTEKGRSLEPILQAMCDWGEEYLEP 89 (90) T ss_pred CCCHHHHHHH-CCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 9889999977-657-69899999999999889937645699999368743907878999999999999998754 No 175 >COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] Probab=24.33 E-value=29 Score=13.82 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=16.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH Q ss_conf 489999863115998999999999997498654 Q gi|254780512|r 516 YQKLAEETCSSHISYSGIQAVLKLLLAEHVSIR 548 (692) Q Consensus 516 ~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIR 548 (692) .++--+++ +++|.- .|+-||.+-.++++=. T Consensus 49 lve~rD~~--Rklp~e-~Q~~lq~~Aa~rI~~~ 78 (189) T COG2019 49 LVEHRDEM--RKLPLE-NQRELQAEAAKRIAEM 78 (189) T ss_pred CCCCHHHH--HCCCHH-HHHHHHHHHHHHHHHH T ss_conf 72028988--529888-9999999999999974 No 176 >TIGR02249 integrase_gron integron integrase; InterPro: IPR011946 Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family that also includes recombinases XerC (IPR011931 from INTERPRO) and XerD (IPR011932 from INTERPRO), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration. Probab=24.04 E-value=40 Score=12.73 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=19.4 Q ss_pred CEEECCHHHHHHHHHCCCE-EECHHHH---HHHHHHHHH--HHHHHHHHHHHHHH Q ss_conf 3034397884588828990-7058899---999999999--98799987299999 Q gi|254780512|r 458 PAFAIMESFSDDLRRQGFH-PIDNLAV---VLTHLSEVI--RNNLSQLLSYKDVK 506 (692) Q Consensus 458 ~A~WI~~~~~~~a~~~G~t-vvdp~~V---iatHl~evi--r~~a~ellg~qEvq 506 (692) ...-+...-|..++.+|+. .+.|-|. .||||=|.= =|-..|+||..||+ T Consensus 243 ~e~~~QRav~~Av~~AGI~KpvTcHTLRHSFATHLLe~G~DIRTVQelLGHsDVk 297 (320) T TIGR02249 243 DEKTIQRAVRRAVERAGIEKPVTCHTLRHSFATHLLESGADIRTVQELLGHSDVK 297 (320) T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCC T ss_conf 7004328999999957898867887421224430565177367898861788422 No 177 >TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178 Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process. Probab=23.99 E-value=41 Score=12.72 Aligned_cols=168 Identities=20% Similarity=0.214 Sum_probs=77.4 Q ss_pred CCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------------HHHHHH----HHHHHH Q ss_conf 830343978845888289907058899999999999987999-87299999-------------999997----666489 Q gi|254780512|r 457 MPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQ-LLSYKDVK-------------NLISRL----DPEYQK 518 (692) Q Consensus 457 l~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~e-llg~qEvq-------------~LLd~L----~~~~P~ 518 (692) .|..=|-|+.||-+|.=|.| -|=|.|||.|=|-+ =|++|.=| ++||.| .++.|. T Consensus 24 FPPGSiLPAERELsElIGVT--------RTTLREVLQRLARDGWLTIQHGKPTKVNnfWETSGLNILeTL~~LD~~~~P~ 95 (275) T TIGR02812 24 FPPGSILPAERELSELIGVT--------RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLIRLDGESVPS 95 (275) T ss_pred CCCCCCCHHHHHHHHHCCCC--------CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCH T ss_conf 46589872466575423766--------3037899988764113436588998627624302735789998618777707 Q ss_pred HHHHHHHC--CCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHH-------------------HHHHCCC--CCHHHHHHH Q ss_conf 99986311--5998999999999997--498654699999999-------------------8753357--998999999 Q gi|254780512|r 519 LAEETCSS--HISYSGIQAVLKLLLA--EHVSIRNLPLILESI-------------------AEVAPHS--RKTSHIVEQ 573 (692) Q Consensus 519 LV~Elvp~--~v~l~~i~~VLq~LL~--E~VsIRdlr~IlEaL-------------------ad~a~~~--kD~~~LtE~ 573 (692) ||++++.- -+|.-=+-.=+|+==+ |++ |.+.-.=+|.| -..-+.+ +|+..--|- T Consensus 96 l~dnLLSARTnIS~IYir~A~K~np~~~~~~-~~~VI~s~e~L~~~~s~~~F~~~SP~~~~~~~~l~d~~~~D~~~~~~I 174 (275) T TIGR02812 96 LIDNLLSARTNISAIYIRAAFKNNPEESEEL-IENVIKSLEVLANAESFAEFVEASPLAEKVKKELEDTSKKDEEKREEI 174 (275) T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 9999997764137788999862283568999-999999999983040179998508268999987420366576889999 Q ss_pred HHHH----HHHHHHHHHC--CCCEEEEEEECHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999----8999865207--78848999888789999999830--37778846456698899999999999999999569 Q gi|254780512|r 574 VRIR----MAQQICGDLA--PTGILNILKLGNHWDMIFYQAIQ--RDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKG 645 (692) Q Consensus 574 VR~a----L~R~I~~~~~--~~g~L~vi~L~p~lE~~l~~~i~--~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g 645 (692) +|.. .=-++-|+++ -++.+.++.|. +++ -+-=|.| .=.+|+ +++|..+.-..+++....+ T Consensus 175 ~~A~~f~~fDY~lf~~LA~~SgN~iY~LILN---------glKglY~RiG~y--YF~~pe-aReLA~~FY~~L~~lc~~~ 242 (275) T TIGR02812 175 LRAEAFTEFDYQLFRGLAFASGNPIYGLILN---------GLKGLYTRIGLY--YFASPE-ARELALQFYKELQELCKAG 242 (275) T ss_pred HHHHHHHHHHHHHHHHHEECCCCCEEEEHCC---------HHHHHHHHHHHH--CCCCHH-HHHHHHHHHHHHHHHHHCC T ss_conf 8787776988999874100137823330200---------101455555110--158878-8899999989999997205 No 178 >PRK09428 pssA phosphatidylserine synthase; Provisional Probab=23.98 E-value=41 Score=12.72 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=6.5 Q ss_pred HHHHHHCCCCCCE Q ss_conf 9999809878832 Q gi|254780512|r 389 KFAVQYGFIVPEI 401 (692) Q Consensus 389 ~la~elG~~iP~I 401 (692) .+..++|..+|-. T Consensus 105 ~l~~~~~~~v~i~ 117 (444) T PRK09428 105 RMAQEYGHDVPVY 117 (444) T ss_pred HHHHHCCCCCCEE T ss_conf 8998759975543 No 179 >COG2966 Uncharacterized conserved protein [Function unknown] Probab=23.89 E-value=41 Score=12.71 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=18.5 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 876489998999999999986522220 Q gi|254780512|r 168 DLSSGLIEEEEAKRRRKELEEESAFFG 194 (692) Q Consensus 168 Dl~aG~I~~~eA~~rR~~l~~Es~fyG 194 (692) +.-.|.++.|||+++=++++++..-|. T Consensus 98 ~v~~~~~~~e~a~~~l~~i~~~~~~y~ 124 (250) T COG2966 98 AVEHGRLDLEEAHKKLDEIQKQPLRYS 124 (250) T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 998288779999999987650865566 No 180 >COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Probab=23.86 E-value=41 Score=12.71 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=31.6 Q ss_pred EEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHH Q ss_conf 0343978845888289907058899999999999987999 Q gi|254780512|r 459 AFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQ 498 (692) Q Consensus 459 A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~e 498 (692) |.-|+++-+++|+..|.+++|+.-=+.|-....+++|+.+ T Consensus 74 AHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~ 113 (294) T COG0761 74 AHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYARE 113 (294) T ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHC T ss_conf 7999989999998779979946897516999999999858 No 181 >PTZ00134 40S ribosomal protein S18; Provisional Probab=23.86 E-value=40 Score=12.79 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=32.3 Q ss_pred HHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHH Q ss_conf 98999865207788489998887899999998303777884645669889999999999999999956998799828335 Q gi|254780512|r 577 RMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEI 656 (692) Q Consensus 577 aL~R~I~~~~~~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~i 656 (692) +.+..||.+..=+..-.+=-|+.+=.+.|++.+....+ ..+ |++.-+-.. -...|.. --+++.++ T Consensus 41 ~~A~~Ic~~~gid~~~r~g~Lteeei~~i~~~I~~~~~-----~~i-P~w~~Nr~k--------D~~~G~~-~hlv~~dL 105 (154) T PTZ00134 41 RFATVVCKQAGVDVTKRAGELTQEEINKIVAIISSPAQ-----FKI-PDWFLNRQK--------DVKEGKN-LHNTSNQL 105 (154) T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-----CCC-CHHHHHHHH--------HHHHCCE-EEEECCHH T ss_conf 99999999809894542164999999999999727210-----156-488765577--------7650631-24530128 Q ss_pred HHHHHHHHHH Q ss_conf 4899999886 Q gi|254780512|r 657 RSYIRMILER 666 (692) Q Consensus 657 Rr~lr~lle~ 666 (692) |+.++.-+++ T Consensus 106 ~~~~~~dIkR 115 (154) T PTZ00134 106 DSCLREDLER 115 (154) T ss_pred HHHHHHHHHH T ss_conf 8999988999 No 182 >COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Probab=23.59 E-value=41 Score=12.67 Aligned_cols=103 Identities=10% Similarity=0.034 Sum_probs=61.1 Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HCCCC------- Q ss_conf 70588999999999999879998729999999999766648999986311599899999999999---74986------- Q gi|254780512|r 477 PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLL---AEHVS------- 546 (692) Q Consensus 477 vvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL---~E~Vs------- 546 (692) ++|....+...+++.+.+.-++-....+-+.-++.++.. |.+| ++--.+|-..=.+++|++= ...+| T Consensus 5 iveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~-~dlv--iLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~ 81 (229) T COG0745 5 LVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLV--LLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTAR 81 (229) T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCEE--EEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECC T ss_conf 991888999999999987597899978989999997269-9999--9988999856899999998516899988999668 Q ss_pred --HHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf --546999999998-753357998999999999989998 Q gi|254780512|r 547 --IRNLPLILESIA-EVAPHSRKTSHIVEQVRIRMAQQI 582 (692) Q Consensus 547 --IRdlr~IlEaLa-d~a~~~kD~~~LtE~VR~aL~R~I 582 (692) ..|...-||+=| ||-.+-=+|..|...+|..|+|.- T Consensus 82 ~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229) T COG0745 82 DDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229) T ss_pred CCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCC T ss_conf 728889999975634233488998999999999967365 No 183 >pfam10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. Members of this family are found in various bacterial 2,3-bisphosphoglycerate-independent phosphoglycerate mutase enzymes, which catalyse the interconversion of 2-phosphoglycerate and 3-phosphoglycerate in the reaction: [2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate]. Probab=23.55 E-value=41 Score=12.67 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=7.0 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 899999999999809 Q gi|254780512|r 381 LRVSKIRRKFAVQYG 395 (692) Q Consensus 381 ~rI~~iRk~la~elG 395 (692) +.-+.+-+.+..++| T Consensus 83 eea~~L~~~l~~~~~ 97 (174) T pfam10143 83 EEAAELIEALNEELG 97 (174) T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999873459 No 184 >TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX. Probab=23.51 E-value=41 Score=12.66 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=11.2 Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 7998283354899999886448981894 Q gi|254780512|r 648 LTIVTLPEIRSYIRMILERNFPSLAVLS 675 (692) Q Consensus 648 pVLl~s~~iRr~lr~lle~~~p~l~VLS 675 (692) |+.++|...+++++.+++...+..++.| T Consensus 88 p~~IvS~G~d~~I~~lL~~~~~~~~i~a 115 (214) T TIGR03333 88 PFYVISGGMDFFVYPLLEGIVEKDRIYC 115 (214) T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEE T ss_conf 7899869933899999996378766797 No 185 >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. Probab=23.37 E-value=32 Score=13.45 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 89999999999974986546999 Q gi|254780512|r 530 YSGIQAVLKLLLAEHVSIRNLPL 552 (692) Q Consensus 530 l~~i~~VLq~LL~E~VsIRdlr~ 552 (692) .|.+.+|.+-|-.+++||+|+.. T Consensus 12 pG~Ia~vt~~L~~~~IsI~nI~I 34 (69) T cd04909 12 PGVIAEVTQILGDAGISIKNIEI 34 (69) T ss_pred CCHHHHHHHHHHHCCCCEEEEEE T ss_conf 98699999999987987472487 No 186 >KOG1814 consensus Probab=23.24 E-value=42 Score=12.62 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=35.7 Q ss_pred CCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 47668830343978845888289907058899999999999987999872999999999976664899998631159989 Q gi|254780512|r 452 EPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYS 531 (692) Q Consensus 452 eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~ 531 (692) -|.|-+...|++++++-..-.. |+-+..+.-++.|.|..++-..+.-+-|-.+.+. T Consensus 91 pP~f~l~s~Wmn~~q~~~lc~~------------------------el~~i~~~~q~m~~l~~~~~s~l~~i~~~~lki~ 146 (445) T KOG1814 91 PPKFELKSYWMNPDQKSALCSK------------------------ELRLIEELNQMMDFLKESTISILNLIAPFELKII 146 (445) T ss_pred CCCEEEEHCCCCHHHHHHCCCH------------------------HHCCCEEHHHHHHHHHHHHHHHHHHCCCCEECCC T ss_conf 9725610101587776411521------------------------2123100999999999989999874252100551 Q ss_pred HHHHHHHHHHHCCCCHHH Q ss_conf 999999999974986546 Q gi|254780512|r 532 GIQAVLKLLLAEHVSIRN 549 (692) Q Consensus 532 ~i~~VLq~LL~E~VsIRd 549 (692) .+ .+.+++-+-+=++-| T Consensus 147 ~~-~~~~~~~~~~~~~~s 163 (445) T KOG1814 147 SQ-KEFPALIRQGESIDS 163 (445) T ss_pred HH-HHCCCCCCCCCCHHH T ss_conf 55-430221123557377 No 187 >TIGR02611 TIGR02611 conserved hypothetical protein TIGR02611; InterPro: IPR013434 Proteins in this entry are putative Actinobacterial proteins of about 150 amino acids in length, with three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.. Probab=23.10 E-value=42 Score=12.60 Aligned_cols=15 Identities=13% Similarity=0.554 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 899999999998615 Q gi|254780512|r 289 ALLISAFFMIVLSVM 303 (692) Q Consensus 289 aL~iaa~~l~~lglv 303 (692) .+.++|-+.+.+|+| T Consensus 32 ~~lv~G~~V~~~GiI 46 (126) T TIGR02611 32 LVLVVGLVVLVVGII 46 (126) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999887787 No 188 >PRK09821 inner membrane permease YgbN; Provisional Probab=22.95 E-value=42 Score=12.58 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=57.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHH Q ss_conf 99999999999999995137704542004899999999985548888898843777763267899987514501326999 Q gi|254780512|r 45 GLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIG 124 (692) Q Consensus 45 ~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG 124 (692) ++.+=+++.++++++.- +....|=++++.+-.+-+..-.+.+..+ ..+-+.||+-. --+| T Consensus 7 lli~~~~I~~li~li~k-----~KlhpFlaLli~ai~~Gl~~G~~~~~ii-----------~~i~~GfG~tl----g~ig 66 (454) T PRK09821 7 LCIALAGVILLLLLVIK-----AKVQPFVALLLVSLLVALAAGIPAGEVG-----------KVMTAGMGGVL----GSVT 66 (454) T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCHHHHH-----------HHHHHHHHHHH----HHHH T ss_conf 99999999999999999-----9650999999999999998399989999-----------99998788888----9999 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999999988645751466655454 Q gi|254780512|r 125 LVVFMILITINFIVITKGATRIAEVGARF 153 (692) Q Consensus 125 ~viF~Il~ivqfiVItkGa~RvaEV~ARF 153 (692) ++|++=-++=+++-.+-||+|+|+--=|. T Consensus 67 iiI~lG~~iG~~Le~SGaa~~ia~~~l~~ 95 (454) T PRK09821 67 IIIGLGAMLGRMIEHSGGAESLANYFTRK 95 (454) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 99999999999999848099999999998 No 189 >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ Probab=22.77 E-value=43 Score=12.56 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 69999999987533579989999999999899986 Q gi|254780512|r 549 NLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQIC 583 (692) Q Consensus 549 dlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~ 583 (692) |...+++.+..|+.+-.+++.+.|.+|.+++...+ T Consensus 113 d~~~~~~~~tK~~~~v~~~~~~~~~~~~A~~~A~~ 147 (164) T cd07039 113 DLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIA 147 (164) T ss_pred CHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHCC T ss_conf 49999899745788859999999999999998540 No 190 >PRK13952 mscL large-conductance mechanosensitive channel; Provisional Probab=22.66 E-value=43 Score=12.54 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=20.7 Q ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 2201345301058999999999888999999973998899 Q gi|254780512|r 196 MDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHH 235 (692) Q Consensus 196 MDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~e 235 (692) +|=|--+|=|-|-..++=.+||=+=-=.||..-.|.+|++ T Consensus 17 iDLAVgVIIG~AF~~IV~slV~diimPlIg~l~G~~dfs~ 56 (143) T PRK13952 17 MDLAVGVIIGGAFGKIVDSLVNDLIMPIIGLITGGLDFSN 56 (143) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 9999999999999999999999889888987328888657 No 191 >KOG3120 consensus Probab=22.53 E-value=43 Score=12.53 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 899999999999749865469999999987 Q gi|254780512|r 530 YSGIQAVLKLLLAEHVSIRNLPLILESIAE 559 (692) Q Consensus 530 l~~i~~VLq~LL~E~VsIRdlr~IlEaLad 559 (692) ..-..+|+|.|=+.||++++++.++++|-. T Consensus 56 ne~M~rv~k~Lheqgv~~~~ik~~~r~iP~ 85 (256) T KOG3120 56 NELMDRVFKELHEQGVRIAEIKQVLRSIPI 85 (256) T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCC T ss_conf 999999999998738899999999851889 No 192 >COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] Probab=22.38 E-value=43 Score=12.51 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=42.0 Q ss_pred CCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 3978845888289907058899999999999987999872999999-999976664899998631159989999999999 Q gi|254780512|r 462 IMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKN-LISRLDPEYQKLAEETCSSHISYSGIQAVLKLL 540 (692) Q Consensus 462 I~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~-LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~L 540 (692) .-...+.+.+...+....+..++..-+.++..+++.-+=...+-.. +=|.+..+..+ -.+.++.+.=+.| T Consensus 119 ~~~~vr~r~~~~~~~~~~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~---------~~l~~l~~l~~~l 189 (322) T COG0598 119 AFDRVRERLEKGTLLTRGADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN---------EELERLGELRRSL 189 (322) T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHH T ss_conf 0899999886135556788999999999999999999999999999999999736546---------8999999999999 Q ss_pred HHCCCCHHHHHHHHHHHHHHH Q ss_conf 974986546999999998753 Q gi|254780512|r 541 LAEHVSIRNLPLILESIAEVA 561 (692) Q Consensus 541 L~E~VsIRdlr~IlEaLad~a 561 (692) +.=+-++.+++.++-.+.... T Consensus 190 ~~lr~~l~~~~~~l~~l~~~~ 210 (322) T COG0598 190 VYLRRALAPLRDVLLRLARRP 210 (322) T ss_pred HHHHHHHHHHHHHHHHHHHCC T ss_conf 999999877999999997437 No 193 >KOG0233 consensus Probab=22.13 E-value=38 Score=12.95 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 999999999888999999973998899999 Q gi|254780512|r 209 ASIIITAINIVGGIVIGCFRYDMSIHHAAD 238 (692) Q Consensus 209 AgiiI~~iNiigG~~iG~~q~gm~~~eA~~ 238 (692) ||++.=+.|++-|+++|+.-.+-..+||.+ T Consensus 131 aGl~vG~~nl~cglavGIigs~aalaDA~n 160 (196) T KOG0233 131 AGLIVGLCNLVCGLAVGIIGSGAALADAAN 160 (196) T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHCCCC T ss_conf 367888999874634400050556541568 No 194 >COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning] Probab=22.07 E-value=44 Score=12.46 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999998889999999739988999999899986457888 Q gi|254780512|r 213 ITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVS 251 (692) Q Consensus 213 I~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVs 251 (692) ..+||++|.+.+|.+-.--......+.+..+-+|.|... T Consensus 38 Tl~vNv~GsFllG~~~~~~~~~~~~~~~~~~~l~tGflG 76 (126) T COG0239 38 TLLVNVVGSFLLGFLTALFAVRLISSEDWRLLLGTGFLG 76 (126) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC T ss_conf 999999999999999999861478849999999988712 No 195 >KOG2714 consensus Probab=21.77 E-value=28 Score=13.88 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=17.1 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 76489998999999999986522220122 Q gi|254780512|r 169 LSSGLIEEEEAKRRRKELEEESAFFGAMD 197 (692) Q Consensus 169 l~aG~I~~~eA~~rR~~l~~Es~fyGaMD 197 (692) ||.|-++..-+ .-++.+-+||.|||=-+ T Consensus 72 LRTg~L~~~g~-~~~~llhdEA~fYGl~~ 99 (465) T KOG2714 72 LRTGDLDASGV-FPERLLHDEAMFYGLTP 99 (465) T ss_pred HHCCCCCCCCC-CHHHHHHHHHHHCCCHH T ss_conf 85178887657-41555544556608378 No 196 >pfam02776 TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain. Probab=21.56 E-value=38 Score=12.90 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 699999999875335799899999999998999865 Q gi|254780512|r 549 NLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICG 584 (692) Q Consensus 549 dlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~ 584 (692) |...+++.+..|+.+-.+++.+.+.+|.+++..... T Consensus 115 d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~ 150 (172) T pfam02776 115 DQLALFRPVTKWAERVTSPDEIPEALDRAFRTALSG 150 (172) T ss_pred HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 554145660668888899999999999999998329 No 197 >TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. . Probab=21.46 E-value=30 Score=13.75 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=26.5 Q ss_pred HHHHHH---HHH-C-C-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 899986---520-7-7-884899988878999999983037778846456698899999999999 Q gi|254780512|r 578 MAQQIC---GDL-A-P-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATN 636 (692) Q Consensus 578 L~R~I~---~~~-~-~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~ 636 (692) ||..++ .++ + | +|+|- | ++|. .+.|+....-|+++.+..++..+.. T Consensus 264 lG~~~a~vAL~~GANDlGGTl~--------E----E~i~-~aAGA~~~~~~~~E~l~~~ik~~G~ 315 (331) T TIGR00423 264 LGLKLAQVALEFGANDLGGTLM--------E----ENIS-KAAGAKTGVGLEVEELIELIKDAGR 315 (331) T ss_pred HHHHHHHHHHHHCCCCCCCEEE--------E----EECC-CCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 5478999999817743687578--------6----5321-1027888886788999999998488 No 198 >pfam07427 consensus Probab=21.42 E-value=45 Score=12.37 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=18.3 Q ss_pred CCEEEEEECCEEEEEEEECCCCE Q ss_conf 87169997482453488417834 Q gi|254780512|r 411 EKGYTIRVYGTTVAISELRVGEV 433 (692) Q Consensus 411 ~~~Y~I~I~Gv~va~gei~~~~l 433 (692) .-.|.|+++|+++++|+..-+.. T Consensus 36 ~v~y~v~mNgv~ig~G~~~~~~~ 58 (126) T pfam07427 36 GLKADIYMNGVKIGEGRILKGAT 58 (126) T ss_pred CEEEEEEECCEEEEEEEECCCEE T ss_conf 42899999999986468602189 No 199 >KOG2716 consensus Probab=21.34 E-value=44 Score=12.43 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=10.0 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 53357998999999999989998 Q gi|254780512|r 560 VAPHSRKTSHIVEQVRIRMAQQI 582 (692) Q Consensus 560 ~a~~~kD~~~LtE~VR~aL~R~I 582 (692) +.+..-|.....|.-+-++--+. T Consensus 143 ~~p~~f~~~~~~e~~~d~l~i~f 165 (230) T KOG2716 143 YPPNGFDFQEFNEEYSDKLDNYF 165 (230) T ss_pred CCCCCCCHHHHHHHHHHHHHHHH T ss_conf 07898738898898778889787 No 200 >pfam01749 IBB Importin beta binding domain. This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Probab=21.32 E-value=45 Score=12.36 Aligned_cols=10 Identities=50% Similarity=0.906 Sum_probs=3.5 Q ss_pred CHHHHHHHHH Q ss_conf 9899999999 Q gi|254780512|r 175 EEEEAKRRRK 184 (692) Q Consensus 175 ~~~eA~~rR~ 184 (692) |.+|.|+||. T Consensus 19 d~~e~RrrR~ 28 (97) T pfam01749 19 DAEEMRRRRE 28 (97) T ss_pred CHHHHHHHHH T ss_conf 8799987422 No 201 >COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Probab=21.10 E-value=28 Score=13.88 Aligned_cols=178 Identities=14% Similarity=0.252 Sum_probs=100.9 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEEC----CCCCCCCCCCCEEECC Q ss_conf 268899999999999809878832445437789871699974824534884178341330----5888767887410147 Q gi|254780512|r 378 DLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVIL----GSGQKPTFPGDEVKEP 453 (692) Q Consensus 378 ~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~----~~~~~~~l~G~~~~eP 453 (692) .|.+-|-.+||..+.++= -|... | -..+.|+..+ ++|.+.+-.. ++...+.-.|..+-.| T Consensus 146 gl~~tIDvL~khvFN~lv--WP~lt--~---~gs~~~~~qv---------v~P~~~~slt~t~l~~~pfpv~Hg~ktG~p 209 (356) T COG5212 146 GLADTIDVLRKHVFNWLV--WPNLT--D---SGSGTYRMQV---------VRPAQSLSLTLTRLTGEPFPVSHGKKTGSP 209 (356) T ss_pred ECHHHHHHHHHHHHCCCC--CCCCC--C---CCCCEEEEEE---------ECHHHEEEEEEEEECCEEEECCCCCCCCCC T ss_conf 240279999987510001--57744--1---4585488898---------473471055334402225641378666884 Q ss_pred CCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHH Q ss_conf 668830343978845888289907058899999999999987999872999999999976664899998-6311599899 Q gi|254780512|r 454 AFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEE-TCSSHISYSG 532 (692) Q Consensus 454 ~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~E-lvp~~v~l~~ 532 (692) .+. ...+=.+.+.+--..-+.-|+|..|=..-+.+.+-|..+|.+..|..+.+| .+-++|.-+++ .+-..+++-- T Consensus 210 ~yS--s~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~Lkgil--iEcS~P~~~~~~~LfGH~~P~~ 285 (356) T COG5212 210 SYS--SMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGIL--IECSYPNDVADNKLFGHMTPTW 285 (356) T ss_pred CCC--EEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE--EEECCCCCCCHHHHHCCCCHHH T ss_conf 421--489985378762489946878203210177999999998764687627169--9943899877567650568499 Q ss_pred H---HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHH Q ss_conf 9---99999999749865469999999987533579989-9999999 Q gi|254780512|r 533 I---QAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTS-HIVEQVR 575 (692) Q Consensus 533 i---~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~-~LtE~VR 575 (692) + ...|+.|..++++.+-+..++.-+--+-.+..||. .+.|..| T Consensus 286 L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~q~~~pr~~ILeeL~ 332 (356) T COG5212 286 LLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQQGQDPRKLILEELQ 332 (356) T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 99999999988625877789607888325860025788899999999 No 202 >cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. Probab=21.10 E-value=46 Score=12.32 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999766648999 Q gi|254780512|r 503 KDVKNLISRLDPEYQKLA 520 (692) Q Consensus 503 qEvq~LLd~L~~~~P~LV 520 (692) .|-..|-+.|.++||..+ T Consensus 54 sDF~~L~~~L~~~~p~~i 71 (120) T cd06868 54 SEFEELYKKLSEKYPGTI 71 (120) T ss_pred HHHHHHHHHHHHHCCCCC T ss_conf 999999999998788983 No 203 >TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process. Probab=21.03 E-value=39 Score=12.82 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHHCC--CCHHHH Q ss_conf 899999999999749--865469 Q gi|254780512|r 530 YSGIQAVLKLLLAEH--VSIRNL 550 (692) Q Consensus 530 l~~i~~VLq~LL~E~--VsIRdl 550 (692) =+.+.+|+|.-.+.. |-.+|+ T Consensus 193 dgLF~~V~rEi~~~~g~ve~~d~ 215 (350) T TIGR02088 193 DGLFLEVCREIAKSYGEVEYEDY 215 (350) T ss_pred CCHHHHHHHHHHCCCCCEEHHHH T ss_conf 63159999998517996413228 No 204 >PRK09468 ompR osmolarity response regulator; Provisional Probab=21.01 E-value=39 Score=12.82 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=50.6 Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCCH------H Q ss_conf 7058899999999999987999872999999999976664899998631159989999999999974--9865------4 Q gi|254780512|r 477 PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAE--HVSI------R 548 (692) Q Consensus 477 vvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E--~VsI------R 548 (692) +||...-+..-+.+.++++-++-....+.+..++.++...|.|| ++.-.+|-..=.++++.+=+. .+|| . T Consensus 10 iVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~Dlv--ilDi~lp~~dG~~l~~~iR~~~~~~pII~LTa~~ 87 (239) T PRK09468 10 VVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLM--VLDLMLPGEDGLSICRRLRSQNNPTPIIMLTAKG 87 (239) T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEE--EECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC T ss_conf 99099999999999999889999998999999999975899899--9878998888734677787505787789994667 Q ss_pred HHHHHHHHH----HHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 699999999----87533579989999999999899986 Q gi|254780512|r 549 NLPLILESI----AEVAPHSRKTSHIVEQVRIRMAQQIC 583 (692) Q Consensus 549 dlr~IlEaL----ad~a~~~kD~~~LtE~VR~aL~R~I~ 583 (692) +.....+++ -||-.+-=++..|...||.-|+|+-. T Consensus 88 ~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR~~~ 126 (239) T PRK09468 88 EEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRQAP 126 (239) T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCC T ss_conf 878999999769868855899989999999999863234 No 205 >PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional Probab=20.76 E-value=47 Score=12.27 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=32.0 Q ss_pred HCCCHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6186489--999999999861578647899999999999999886443 Q gi|254780512|r 284 SHYPRAL--LISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKN 329 (692) Q Consensus 284 ~~~p~aL--~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~ 329 (692) +-+||=| |+.-+++.+++. +|.-....+|.++|.+.|.+.++. T Consensus 13 ~l~Pkyw~~wl~~~~~~l~s~---LP~~~~~~lg~~lG~ll~~~~~~r 57 (306) T PRK08733 13 LRNPKHWPMYLGLAVMVLAGR---LPWTLQRALGRGVGWVAMRLAGTR 57 (306) T ss_pred HCCCCHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHCCHH T ss_conf 129646999999999999998---989999999999999999864358 No 206 >pfam06942 GlpM GlpM protein. This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa. Probab=20.71 E-value=47 Score=12.27 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=17.3 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 98761864899999999998615786478999 Q gi|254780512|r 281 EQLSHYPRALLISAFFMIVLSVMPNLPAFPFI 312 (692) Q Consensus 281 ~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl 312 (692) =++++.+|..+++| ++|=||++..+ T Consensus 13 IalLsksk~yYIAG-------LvPLFPTFALI 37 (107) T pfam06942 13 IALLSKTKNFYIAG-------LVPLFPTFALI 37 (107) T ss_pred HHHHHHHHHHHHHH-------HCCCCCHHHHH T ss_conf 99997001578765-------21113148898 No 207 >COG4769 Predicted membrane protein [Function unknown] Probab=20.53 E-value=47 Score=12.24 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=61.8 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHEEEECCC-------C-C-CHHHHHHHHHHCCCHHHH Q ss_conf 99997399889999998999864578885---1589998733102662377-------4-3-058999998761864899 Q gi|254780512|r 224 IGCFRYDMSIHHAADVFVRLSVGDGLVSQ---VPALIISLSAAFLVSRTTS-------K-G-STNTAIVEQLSHYPRALL 291 (692) Q Consensus 224 iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQ---IPaLliS~aaGiiVTRvss-------~-~-~lg~~i~~Ql~~~p~aL~ 291 (692) +=+.-.-.++.+|+++-.+=.|+-.|++- .|..+.|.|+|++-|=.-. + . =+|-...+-+++|---|. T Consensus 45 vlIa~~~l~~~~~~~~i~lr~il~AL~sGtlfs~~Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~mGaF~hNl~QLi 124 (181) T COG4769 45 VLIAFETLNFKDALQTILLRVILQALFSGTLFSPVFLYSFAGAILSTLFMYFLYQFGPKYLSLLGISVMGAFTHNLGQLI 124 (181) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHH T ss_conf 87839864687999999999999999748622189999999999999999999976974274541116889998699999 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 999999998615786478999999 Q gi|254780512|r 292 ISAFFMIVLSVMPNLPAFPFIMLG 315 (692) Q Consensus 292 iaa~~l~~lglvPGmP~~~Fl~la 315 (692) +++.+.+.-+..--+|.+.|+.+= T Consensus 125 vas~Lv~~~~v~l~lPll~flGiv 148 (181) T COG4769 125 VASFLVFTTSVMLYLPLLIFLGIV 148 (181) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 999998130699999999999999 No 208 >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Probab=20.37 E-value=47 Score=12.22 Aligned_cols=260 Identities=15% Similarity=0.187 Sum_probs=117.6 Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCC-------CCCCEEECCCCCC Q ss_conf 999999998098788324454377898716999748245348841783413305888767-------8874101476688 Q gi|254780512|r 385 KIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPT-------FPGDEVKEPAFGM 457 (692) Q Consensus 385 ~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~-------l~G~~~~eP~fgl 457 (692) .-||+--.|+||.+|+- .||--|.-.+|.=+.+.+...+.+ +-+.-+...++..... ++-+-..-|+-|. T Consensus 355 rsRK~~LVeyGFRLPSA--lDNRPL~feEf~~~~~q~i~VSAT-Pg~~E~e~s~~~vveQiIRPTGLlDP~ievRp~~~Q 431 (663) T COG0556 355 RSRKQTLVEYGFRLPSA--LDNRPLKFEEFEAKIPQTIYVSAT-PGDYELEQSGGNVVEQIIRPTGLLDPEIEVRPTKGQ 431 (663) T ss_pred HHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHCCCEEEEECC-CCHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCC T ss_conf 78888898715768611--137997779999745977999789-974877745584268872477888985265148774 Q ss_pred CEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 30343978845888289907058899999999999987999872999999---999976664899998631159989999 Q gi|254780512|r 458 PAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKN---LISRLDPEYQKLAEETCSSHISYSGIQ 534 (692) Q Consensus 458 ~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~---LLd~L~~~~P~LV~Elvp~~v~l~~i~ 534 (692) ---.+. +-+...+...-+.| ++++-.+.|-+..+..|+ |.. ++. =+|.+++. +++.++ -+|.+ T Consensus 432 vdDL~~-EI~~r~~~~eRvLV---TtLTKkmAEdLT~Yl~e~-gik-v~YlHSdidTlER~--eIirdL-----R~G~~- 497 (663) T COG0556 432 VDDLLS-EIRKRVAKNERVLV---TTLTKKMAEDLTEYLKEL-GIK-VRYLHSDIDTLERV--EIIRDL-----RLGEF- 497 (663) T ss_pred HHHHHH-HHHHHHHCCCEEEE---EEEHHHHHHHHHHHHHHC-CCE-EEEEECCCHHHHHH--HHHHHH-----HCCCC- T ss_conf 789999-99999964972999---843688899999999866-964-78642440389999--999997-----57787- Q ss_pred HHH--HHHHHCCCCH-----------------HHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHH-----HHHHHHH Q ss_conf 999--9999749865-----------------4699999999875335799-----899999999998-----9998652 Q gi|254780512|r 535 AVL--KLLLAEHVSI-----------------RNLPLILESIAEVAPHSRK-----TSHIVEQVRIRM-----AQQICGD 585 (692) Q Consensus 535 ~VL--q~LL~E~VsI-----------------Rdlr~IlEaLad~a~~~kD-----~~~LtE~VR~aL-----~R~I~~~ 585 (692) +|| =|||+||.-| |+-+....++.-.|..... .+..|+..+.|+ +|+|-.. T Consensus 498 DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~ 577 (663) T COG0556 498 DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRREIQMA 577 (663) T ss_pred CEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 48985013313478864557988606854443453259999878863579739997101149999999988889999999 Q ss_pred HCC-CCEEEEEEECHHHHHHHHHHHHC-C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH Q ss_conf 077-88489998887899999998303-7--7788464566988999999999999999995699879982833548999 Q gi|254780512|r 586 LAP-TGILNILKLGNHWDMIFYQAIQR-D--SKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIR 661 (692) Q Consensus 586 ~~~-~g~L~vi~L~p~lE~~l~~~i~~-t--~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr 661 (692) |.. +|..| -++--.+.+.+...... . .......-.++++..++++..+...+.++...-. .=-+..+|--+. T Consensus 578 yN~~hgItP-~ti~K~i~d~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~~l~---FE~Aa~lRD~i~ 653 (663) T COG0556 578 YNEEHGITP-QTIKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKKLEKEMKEAAKNLE---FEEAARLRDEIK 653 (663) T ss_pred HHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHH T ss_conf 999669997-1220115666420110123332012222348989999999999999999998478---888999999999 Q ss_pred HHHH Q ss_conf 9988 Q gi|254780512|r 662 MILE 665 (692) Q Consensus 662 ~lle 665 (692) ++=+ T Consensus 654 ~L~~ 657 (663) T COG0556 654 ELKE 657 (663) T ss_pred HHHH T ss_conf 9998 No 209 >PHA01633 putative glycosyl transferase group 1 Probab=20.25 E-value=28 Score=13.95 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=13.0 Q ss_pred EEEECCCCCCHHHHHHHHHHCC Q ss_conf 2662377430589999987618 Q gi|254780512|r 265 LVSRTTSKGSTNTAIVEQLSHY 286 (692) Q Consensus 265 iVTRvss~~~lg~~i~~Ql~~~ 286 (692) +.-.-||-.|..++|.+-+-.+ T Consensus 6 ltmnyssi~nvaediaevlr~n 27 (335) T PHA01633 6 LTMNYSSISNVSEDIAEVLREN 27 (335) T ss_pred EEECHHHHHHHHHHHHHHHHHC T ss_conf 9840055541788999999728 No 210 >TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex. Probab=20.22 E-value=27 Score=14.09 Aligned_cols=238 Identities=13% Similarity=0.213 Sum_probs=118.2 Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCC-CCCCCCCCCEEECCCCCC--CEEE Q ss_conf 9999999980987883244543778987169997482453488417834133058-887678874101476688--3034 Q gi|254780512|r 385 KIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGS-GQKPTFPGDEVKEPAFGM--PAFA 461 (692) Q Consensus 385 ~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~-~~~~~l~G~~~~eP~fgl--~A~W 461 (692) .-||+--.||||.+|+= .||-=|+-.|+.=+++.+...+.+ ||.+=.=.++ .+.+.+ .=|+ |+ |-+- T Consensus 356 ~SRK~~LVeYGFRLPSA--lDNRPLkfeEF~~~~~Q~vyVSAT--PG~~E~e~S~~~vvEQi-----iRPT-GLlDP~i~ 425 (667) T TIGR00631 356 RSRKQTLVEYGFRLPSA--LDNRPLKFEEFEERINQVVYVSAT--PGDYELEQSGGNVVEQI-----IRPT-GLLDPEIE 425 (667) T ss_pred HHHHHHHHHCCCCCCHH--CCCCCCCHHHHHHHCCCEEEEECC--CCHHHHHHHCCCEEEEE-----ECCC-CCCCCEEE T ss_conf 67654332027753001--358789879999855988999638--85899973269158998-----7377-86488368 Q ss_pred CCH----------HHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 397----------88458882899070588999999999999879998729--999999999766648999986311599 Q gi|254780512|r 462 IME----------SFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSY--KDVKNLISRLDPEYQKLAEETCSSHIS 529 (692) Q Consensus 462 I~~----------~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~--qEvq~LLd~L~~~~P~LV~Elvp~~v~ 529 (692) |-| +-+..++...=+.|. .++-.|.|=|..+..|+ |+ .=...=+|.+++-. ++.+| |.=. T Consensus 426 VRP~~gQvdDL~~EI~~R~~~~ERvLVT---TLTKkMAEdLTdYl~E~-Gikv~YLHSeIdt~ER~e--iirdL--R~G~ 497 (667) T TIGR00631 426 VRPTDGQVDDLLSEIRQRVARNERVLVT---TLTKKMAEDLTDYLKEL-GIKVRYLHSEIDTLERVE--IIRDL--RLGE 497 (667) T ss_pred EECCCCHHHHHHHHHHHHHHCCCCEEEE---EHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH--HHHHH--CCCC T ss_conf 8358515888899999999728948998---20167788999997058-837987145578999999--99984--4788 Q ss_pred HHHHHHHHHHHHHCCCCH-----------------HHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHH-----HHH Q ss_conf 899999999999749865-----------------46999999998753357998-----999999999989-----998 Q gi|254780512|r 530 YSGIQAVLKLLLAEHVSI-----------------RNLPLILESIAEVAPHSRKT-----SHIVEQVRIRMA-----QQI 582 (692) Q Consensus 530 l~~i~~VLq~LL~E~VsI-----------------Rdlr~IlEaLad~a~~~kD~-----~~LtE~VR~aL~-----R~I 582 (692) .--+.- =||||||.=| |+-|....||.-.|...+-- +..|+..+.|+. |.| T Consensus 498 fDVLVG--INLLREGLDlPEVSLVAILDADKEGFLRSerSLIQTIGRAARN~~G~VilYAD~iT~sM~~AI~ET~RRR~~ 575 (667) T TIGR00631 498 FDVLVG--INLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIEETERRRKI 575 (667) T ss_pred CEEEEE--CCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHH T ss_conf 408860--002002465114889976327888998663027889888752579659997287007899999987888999 Q ss_pred HHHHCC-CCEEEEEEECHHHHHHHHHHHHC------CCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 652077-88489998887899999998303------77788-------464566988999999999999999995 Q gi|254780512|r 583 CGDLAP-TGILNILKLGNHWDMIFYQAIQR------DSKGE-------CVDFNVEPRAVEMFSENATNSIRQYID 643 (692) Q Consensus 583 ~~~~~~-~g~L~vi~L~p~lE~~l~~~i~~------t~~G~-------~~~l~l~P~~~~~l~~~i~~~~~~~~~ 643 (692) =..|.. +|.-| =++.-++++.+...... ..+.+ ...-.+.++..+++++++...+.++.. T Consensus 576 Q~~YNe~HgItP-~ti~K~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~ 649 (667) T TIGR00631 576 QIAYNEEHGITP-QTIRKKIKDILDIELKEKEDAAKKKKKGKVAEEPAEDASDLSEKELKKLIKQLEKEMKQAAR 649 (667) T ss_pred HHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999997538978-85405688877777644455555320231122210313208987999999999999999997 No 211 >PRK10429 melibiose:sodium symporter; Provisional Probab=20.19 E-value=48 Score=12.19 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 7299999999997666489999863115998999999 Q gi|254780512|r 500 LSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAV 536 (692) Q Consensus 500 lg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~V 536 (692) |+++..+++.++|++++.+...|-+.--+|++.+.+| T Consensus 435 L~~~~~~eI~~~L~~rr~~~~~~~~~~~~~~~~~~~~ 471 (473) T PRK10429 435 LNGDMLRKIQIHLLDKYRKVPPEPVHPDIPVGAVSDV 471 (473) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCC T ss_conf 8899999999999999850899999999874410346 No 212 >COG2322 Predicted membrane protein [Function unknown] Probab=20.17 E-value=48 Score=12.19 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999886 Q gi|254780512|r 310 PFIMLGGFFACAGFYVP 326 (692) Q Consensus 310 ~Fl~la~~l~~~a~~~~ 326 (692) +|..++..+..+||+.- T Consensus 51 i~~~~s~~~llag~~~I 67 (177) T COG2322 51 IFNSLSFIFLLAGWRLI 67 (177) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999999 No 213 >TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly. Probab=20.07 E-value=48 Score=12.17 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=29.0 Q ss_pred EECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHH Q ss_conf 34397884588828990705889999999999998799987299999999997666489999863115-9989 Q gi|254780512|r 460 FAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSH-ISYS 531 (692) Q Consensus 460 ~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~-v~l~ 531 (692) --|-...|++++..|.-..|-.+.| ++||+||||=.-++ +|+. T Consensus 131 EviY~~~Ke~L~~~GVIF~d~d~Al-----------------------------~~YPdLVKeYF~~v~VPp~ 174 (469) T TIGR01980 131 EVIYHNIKEDLEEKGVIFCDMDTAL-----------------------------KEYPDLVKEYFGKVCVPPS 174 (469) T ss_pred EEEECCCHHHHHHCCEEECCHHHHH-----------------------------HHCHHHHHHHCCCCCCCCC T ss_conf 4462220467562987863859986-----------------------------5172567866270025876 No 214 >PRK09825 idnK D-gluconate kinase; Provisional Probab=20.04 E-value=48 Score=12.17 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=11.8 Q ss_pred EEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH Q ss_conf 8999888789999999830377788464566988999 Q gi|254780512|r 592 LNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVE 628 (692) Q Consensus 592 L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~ 628 (692) +..+-|+.+.|. +.+.+.+ -.|.| |.|++++ T Consensus 100 v~fv~L~g~~~~-i~~Rl~~-R~gHF----Mp~~LL~ 130 (176) T PRK09825 100 VHFLWLDGDYET-ILARMQR-RAGHF----MPPDLLQ 130 (176) T ss_pred EEEEEEECCHHH-HHHHHHH-CCCCC----CCHHHHH T ss_conf 799997189999-9999974-60379----9979999 Done!