HHsearch results for GI: 254780512 and protein with PDBid: 3mix_A
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=100.00 E-value=0 Score=769.90 Aligned_cols=375 Identities=26% Similarity=0.418 Sum_probs=349.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999886443222210011000---2356676753001002460122101-1111234575526889999999999
Q gi|254780512|r 316 GFFACAGFYVPYKNELQRLAKVAQIQ---EASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFA 391 (692)
Q Consensus 316 ~~l~~~a~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la 391 (692)
+++++.||+++|+.+.++..+....+ ......++++......|++++++|| ++++++.+++++|.+||+++||+++
T Consensus 2 g~~~~~ay~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~vd~i~lelG~~Li~lvd~~~gg~L~~rI~~iRk~ia 81 (382)
T 3mix_A 2 GHHHHHAYTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLADANQGGDLLDRIVMIRRQLA 81 (382)
T ss_dssp ---------------------CHHHHHHHHSCCCSHHHHGGGSCCCSEEEEECGGGHHHHHSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 86421566413523335567777754420003478531344357760799965064977484559749999999999999
Q ss_pred HHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHH
Q ss_conf 98098788324454377898716999748245348841783413305888767887410147668830343978845888
Q gi|254780512|r 392 VQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLR 471 (692)
Q Consensus 392 ~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~ 471 (692)
.|+||++|+||||||++|+||+|+|+|+|+++++|+++||++||+++++....++|++++||+||+||+||+++++++|+
T Consensus 82 ~elG~v~P~IrIrDn~~L~~~~Y~I~i~gv~v~~g~l~~~~lLai~~~~~~~~~~g~~~~ePafgl~a~WI~~~~~~~a~ 161 (382)
T 3mix_A 82 LELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYLAMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEAD 161 (382)
T ss_dssp HHHSCCCCCCEEEECTTSCTTEEEEEETTEEEEEEECCTTCCBC------------------------------------
T ss_pred HHCCCCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHH
T ss_conf 97198789469997877888859999988998641356661111178765445788303278888751775776787999
Q ss_pred HCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 28990705889999999999998799987299999999997666489999863115998999999999997498654699
Q gi|254780512|r 472 RQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLP 551 (692)
Q Consensus 472 ~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr 551 (692)
.+|||||||.+||+||+++++|+||+||+||||||+|+|.++++||+||||++|+++|++.+|+|||+||+|+|||||++
T Consensus 162 ~~G~tvvd~~~ViaTHL~evir~~a~ellgrqevq~LLd~l~~~~p~LVeelvp~~l~l~~i~~VLq~LL~E~VsIRdl~ 241 (382)
T 3mix_A 162 MLGYTVVDPASVVSTHITEKIKQHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLV 241 (382)
T ss_dssp ----CCBCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHTTTTCCHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 77985763344899999999999699996999999999999877579999875557798999999999987786353599
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999998753357998999999999989998652077-884899988878999999983037778846456698899999
Q gi|254780512|r 552 LILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMF 630 (692)
Q Consensus 552 ~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~~~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l 630 (692)
+|||||+||++++|||+.||||||++|+||||++|.+ +|.|+|++|+|+||++++++++++++|++ +++||+..+++
T Consensus 242 tIlEtLad~a~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~L~vi~L~p~lE~~l~~s~~~~~~g~~--l~l~P~~~~~l 319 (382)
T 3mix_A 242 TIFETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTEHGNY--LSLEPDISESI 319 (382)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHCCTTSCEECBEECHHHHHHHHHHBC------C--BCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHH
T ss_conf 9999999872147999999999999999999998568987158997398999999998762378885--56598999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf 99999999999956998799828335489999988644898189440178996579888609
Q gi|254780512|r 631 SENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692)
Q Consensus 631 ~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692)
++++++.++++...|.+|||+|||++||++|+|+++++|+++||||+||+++++++++|+|+
T Consensus 320 ~~~~~~~~~~~~~~g~~pVllvs~~iR~~l~~l~~~~~p~l~VLS~~EI~~~~~i~~ig~V~ 381 (382)
T 3mix_A 320 VRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLPVLSYNELEANVEVQSIGVVD 381 (382)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEECHHHHHHHHHHHTTTCTTCCEEEGGGSCTTCCEECSCEEC
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCEEEEEEEE
T ss_conf 99999999999964998599978106799999999868998697055459998158999997