RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein
FlhA [Candidatus Liberibacter asiaticus str. psy62]
         (692 letters)



>2obd_A Cholesteryl ester transfer protein; lipid transfer protein,
           lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A
           {Homo sapiens} (A:282-439)
          Length = 158

 Score = 31.0 bits (70), Expect = 0.48
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 618 VDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMIL 664
           +DF + P+ V   +E+++ SI+ ++   I  T V +PE+ S + ++ 
Sbjct: 104 LDFQITPKTVSNLTESSSESIQSFLQSMI--TAVGIPEVMSRLEVVF 148


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 30.1 bits (68), Expect = 0.79
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 14/36 (38%)

Query: 583 CGDLAPTGILNILKLGNHWDMIFY-----Q-AIQRD 612
             D     +++I  L    +++FY     Q A+ RD
Sbjct: 2   LAD-----VMSIESLV---EVVFYRGMTMQVAVPRD 29


>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} (A:104-227)
          Length = 124

 Score = 29.5 bits (66), Expect = 1.5
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 503 KDVKNLISRLDPEYQKLAEETCSSHISYSGIQA-VLKLLLAEHVSIRNLPLILESIA-EV 560
           KD+ +  +R++   +       +   +  GI    L    +  V I              
Sbjct: 34  KDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIE 93

Query: 561 APHSRKTSHIVEQV 574
             HS   S +++  
Sbjct: 94  NIHSETYSLLIDTY 107


>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME
           TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
           (A:1-89)
          Length = 89

 Score = 27.8 bits (63), Expect = 4.0
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 7/24 (29%)

Query: 294 AFFMIVLSVMPNLPAFPFIMLGGF 317
           AF MI   VMP       IM+GGF
Sbjct: 62  AFVMIFFMVMP-------IMIGGF 78


>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport
           protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A
           (A:56-137)
          Length = 82

 Score = 27.8 bits (62), Expect = 4.1
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 477 PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE 515
           P    A VL+HLS   +    + L    ++ ++  L  +
Sbjct: 1   PKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLD 39


>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
           mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
           {Shewanella frigidimarina} (A:168-250)
          Length = 83

 Score = 27.0 bits (60), Expect = 8.0
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 619 DFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTL 653
               +P  V++ S ++ +S+      G  LT V +
Sbjct: 34  QNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGM 68


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.324    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,958,127
Number of extensions: 223315
Number of successful extensions: 800
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 20
Length of query: 692
Length of database: 4,956,049
Length adjustment: 95
Effective length of query: 597
Effective length of database: 1,744,574
Effective search space: 1041510678
Effective search space used: 1041510678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.2 bits)