RPSBLAST alignment of GI: 254780512 and protein with PDBid: 3myd

>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III secretion, cytoplasmic FRAG protein transport; 2.40A {Helicobacter pylori} Length = 365
 Score =  241 bits (616), Expect = 4e-64
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 8/337 (2%)

Query: 360 VELVLG-SLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRV 418
           +EL LG  L+S   +    DL  R+  IR+K A  YGF++P+I++  ++ LP   Y I++
Sbjct: 31  LELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKL 90

Query: 419 YGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPI 478
            G  +    +   + L +          G   KEPAFGM A  I     ++   QG+  I
Sbjct: 91  KGIVIGEGMVMPDKFLAMNTGFVNREIEGIPTKEPAFGMDALWIDAKNKEEAIIQGYTII 150

Query: 479 DNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLK 538
           D   V+ TH SE+++      ++  +VK+L+ RL  +Y  + EE+    I    I++VL+
Sbjct: 151 DPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEES--KKIPTGAIRSVLQ 208

Query: 539 LLLAEHVSIRNLPLILESIAEVAPHSRK-TSHIVEQVRIRMAQQICGDLAPT-GILNILK 596
            LL E + I+++  ILE+I ++AP  +   + + EQVR R+++ I        G L  L 
Sbjct: 209 ALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAFKSEDGRLKFLT 268

Query: 597 LGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGI-PLTIVTLPE 655
                +      ++ +   +     +    ++   E  +    + + KGI P+ ++  P 
Sbjct: 269 FSTDSEQFLLNKLRENGTSK--SLLLNVGELQKLIEGVSEEAMKVLQKGIAPVILIVEPN 326

Query: 656 IRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692
           +R  +   +E+    + VLSH E+        LGTI 
Sbjct: 327 LRKALSNQMEQARIDVVVLSHAELDPNSNFEALGTIH 363