RPSBLAST alignment of GI: 254780512 and protein with PDBid: 3myd
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III secretion, cytoplasmic FRAG protein transport; 2.40A {Helicobacter pylori} Length = 365
Score = 241 bits (616), Expect = 4e-64
Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 8/337 (2%)
Query: 360 VELVLG-SLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRV 418
+EL LG L+S + DL R+ IR+K A YGF++P+I++ ++ LP Y I++
Sbjct: 31 LELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKL 90
Query: 419 YGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPI 478
G + + + L + G KEPAFGM A I ++ QG+ I
Sbjct: 91 KGIVIGEGMVMPDKFLAMNTGFVNREIEGIPTKEPAFGMDALWIDAKNKEEAIIQGYTII 150
Query: 479 DNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLK 538
D V+ TH SE+++ ++ +VK+L+ RL +Y + EE+ I I++VL+
Sbjct: 151 DPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEES--KKIPTGAIRSVLQ 208
Query: 539 LLLAEHVSIRNLPLILESIAEVAPHSRK-TSHIVEQVRIRMAQQICGDLAPT-GILNILK 596
LL E + I+++ ILE+I ++AP + + + EQVR R+++ I G L L
Sbjct: 209 ALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAFKSEDGRLKFLT 268
Query: 597 LGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGI-PLTIVTLPE 655
+ ++ + + + ++ E + + + KGI P+ ++ P
Sbjct: 269 FSTDSEQFLLNKLRENGTSK--SLLLNVGELQKLIEGVSEEAMKVLQKGIAPVILIVEPN 326
Query: 656 IRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692
+R + +E+ + VLSH E+ LGTI
Sbjct: 327 LRKALSNQMEQARIDVVVLSHAELDPNSNFEALGTIH 363