RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein
FlhA [Candidatus Liberibacter asiaticus str. psy62]
         (692 letters)



>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein
           transport, type III secretion; 2.30A {Bacillus subtilis}
          Length = 382

 Score =  265 bits (678), Expect = 2e-71
 Identities = 97/375 (25%), Positives = 177/375 (47%), Gaps = 8/375 (2%)

Query: 324 YVPYKNELQRLAKVAQIQEASKQNQHSAQLNFI----TSGVELVLG-SLVSNRLLSSQED 378
           Y   K+  ++      ++E ++ ++  +  + +       +E   G  L+     +   D
Sbjct: 9   YTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLADANQGGD 68

Query: 379 LFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILG 438
           L  R+  IRR+ A++ G ++P +++  +I+L    Y +++ G  VA  EL +   L +  
Sbjct: 69  LLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYLAMSP 128

Query: 439 SGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQ 498
           + +     G E  EP+FG+PA  I E+  D+    G+  +D  +VV TH++E I+ +  +
Sbjct: 129 TPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQHAHE 188

Query: 499 LLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIA 558
           L+  ++ K LI  L   Y  L EE   + +S   IQ VL  LL E VSIRNL  I E++A
Sbjct: 189 LIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTIFETLA 248

Query: 559 EVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGEC 617
           +    +  +  + E  R  +A+QI    A    +L ++      +      +Q+   G  
Sbjct: 249 DYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTEHGN- 307

Query: 618 VDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHM 677
              ++EP   E    +      Q   +     ++  P +R Y++ +LER FP L VLS+ 
Sbjct: 308 -YLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLPVLSYN 366

Query: 678 EIAKGLKVNILGTIS 692
           E+   ++V  +G + 
Sbjct: 367 ELEANVEVQSIGVVD 381


>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like
           fold, bacterial flagellum BIO bacterial flagellum
           protein export; 2.80A {Salmonella typhimurium}
          Length = 389

 Score =  260 bits (665), Expect = 8e-70
 Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 8/316 (2%)

Query: 378 DLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVIL 437
           +L  R+  IR+KFA   GF+ P + +  ++ L    Y I + G  +   +   G  L I 
Sbjct: 79  ELLGRIRSIRKKFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 138

Query: 438 GSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLS 497
                 T PG++  +PAFG+ A  I  +  +  + QGF  ++   VV THL+ +I    +
Sbjct: 139 PGTAAGTLPGEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQFSA 198

Query: 498 QLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESI 557
           +L   ++ + L+ R+  E  KL E+     ++ + +  VL+ LLAE V IR++  ILE++
Sbjct: 199 ELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILETL 258

Query: 558 AEVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGE 616
           AE AP       +   VR+ + + I     P    + ++ L    + +  QA+Q      
Sbjct: 259 AEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQALQGGG--- 315

Query: 617 CVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSH 676
                +EP   +        ++ +    G P  ++    +R  +   L R+ P L VLS+
Sbjct: 316 ----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 371

Query: 677 MEIAKGLKVNILGTIS 692
           +E++    + +  TI 
Sbjct: 372 LELSDNRHIRMTATIG 387


>2x49_A INVA, invasion protein INVA; protein transport, transport,
           pathogenesis; 1.50A {Salmonella enterica subsp} PDB:
           2x4a_A* 3lw9_A
          Length = 333

 Score =  253 bits (646), Expect = 1e-67
 Identities = 72/310 (23%), Positives = 144/310 (46%), Gaps = 3/310 (0%)

Query: 382 RVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQ 441
              ++R +F + YG  +PE+ +     L +    + +    V    +    + V+  S +
Sbjct: 27  LAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDE 86

Query: 442 KPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLS 501
             +F  +           F +     + LR  G+   + L  +   L+  +  N+++   
Sbjct: 87  VVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFG 146

Query: 502 YKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVA 561
            ++ K+++ +L+ ++  L +E    H +   I  VL+ LL+E VS+RN+ LI+E++A  A
Sbjct: 147 IQETKHMLDQLEAKFPDLLKE-VLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWA 205

Query: 562 PHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFN 621
           P  +   ++VE +R  MA+ IC   A  G L  + +    + +  + I++ S       +
Sbjct: 206 PREKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGST--FLS 263

Query: 622 VEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAK 681
           ++P A     +  T  +   +     L ++T  ++R +I+ ++E  FP L VLS  EIA 
Sbjct: 264 LDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIAD 323

Query: 682 GLKVNILGTI 691
              VN++ TI
Sbjct: 324 SKSVNVIKTI 333


>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III
           secretion, cytoplasmic FRAG protein transport; 2.40A
           {Helicobacter pylori}
          Length = 365

 Score =  241 bits (616), Expect = 4e-64
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 8/337 (2%)

Query: 360 VELVLG-SLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRV 418
           +EL LG  L+S   +    DL  R+  IR+K A  YGF++P+I++  ++ LP   Y I++
Sbjct: 31  LELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKL 90

Query: 419 YGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPI 478
            G  +    +   + L +          G   KEPAFGM A  I     ++   QG+  I
Sbjct: 91  KGIVIGEGMVMPDKFLAMNTGFVNREIEGIPTKEPAFGMDALWIDAKNKEEAIIQGYTII 150

Query: 479 DNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLK 538
           D   V+ TH SE+++      ++  +VK+L+ RL  +Y  + EE+    I    I++VL+
Sbjct: 151 DPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEES--KKIPTGAIRSVLQ 208

Query: 539 LLLAEHVSIRNLPLILESIAEVAPHSRK-TSHIVEQVRIRMAQQICGDLAPT-GILNILK 596
            LL E + I+++  ILE+I ++AP  +   + + EQVR R+++ I        G L  L 
Sbjct: 209 ALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAFKSEDGRLKFLT 268

Query: 597 LGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGI-PLTIVTLPE 655
                +      ++ +   +     +    ++   E  +    + + KGI P+ ++  P 
Sbjct: 269 FSTDSEQFLLNKLRENGTSK--SLLLNVGELQKLIEGVSEEAMKVLQKGIAPVILIVEPN 326

Query: 656 IRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692
           +R  +   +E+    + VLSH E+        LGTI 
Sbjct: 327 LRKALSNQMEQARIDVVVLSHAELDPNSNFEALGTIH 363


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 68.8 bits (168), Expect = 4e-12
 Identities = 96/613 (15%), Positives = 171/613 (27%), Gaps = 256/613 (41%)

Query: 196 MDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSI----HHAA----DVFVR-LS-V 245
           MD  S   R      + ++          G   + + +       A    + F + L   
Sbjct: 1   MDAYS--TR-----PLTLSH---------GSLEHVLLVPTASFFIASQLQEQFNKILPEP 44

Query: 246 GDGLVSQ-VPALIISLSAAFL--VSRTTSKGSTNTAIVEQLSHYPRAL--LISAF---FM 297
            +G  +   P     L   FL  VS               +  + + L   ++ F   ++
Sbjct: 45  TEGFAADDEPTTPAELVGKFLGYVSSLVEPSK--------VGQFDQVLNLCLTEFENCYL 96

Query: 298 I---VLSVMPNLPAFPFIMLGG--------FFACAGFYVPY-KNELQRLAKVAQIQEASK 345
               + ++   L       L            A      P+ K     L +         
Sbjct: 97  EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG------ 150

Query: 346 QNQHSAQLNFITSG-----------VEL------VLGSLV---SNRL--LSSQEDLFLRV 383
             + +AQL  I  G            +L      ++G L+   +  L  L          
Sbjct: 151 --EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL---DA 205

Query: 384 SKIRRKFAVQYGFIV------PEIKVTTD------ISLPEKG------Y--TIRVYGTTV 423
            K+  +     G  +      P      D      IS P  G      Y  T ++ G T 
Sbjct: 206 EKVFTQ-----GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260

Query: 424 AISELRVGEVLVIL----GSGQKPTFPGDEVKEPAFGM-PAFAIM-----ESFSDDLRR- 472
                  GE+   L    G  Q              G+  A AI      ESF   +R+ 
Sbjct: 261 -------GELRSYLKGATGHSQ--------------GLVTAVAIAETDSWESFFVSVRKA 299

Query: 473 ------------QGFHPIDNL--AVV---LTH--------LSEVIRNNLSQLLSYKDVKN 507
                       + + P  +L  +++   L +        LS  I N     L+ + V++
Sbjct: 300 ITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLS--ISN-----LTQEQVQD 351

Query: 508 LISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHV-SIRNLPLILESI--------A 558
            +++ +     L        +  S +     L+++    S+  L L L           +
Sbjct: 352 YVNKTN---SHLPAG---KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405

Query: 559 EVAPHS-RKT--------------SHIVEQVRIRMAQQICGDLAPTGIL---NILKL--- 597
            + P S RK               SH++       +  I  DL    +      +++   
Sbjct: 406 RI-PFSERKLKFSNRFLPVASPFHSHLLVPA----SDLINKDLVKNNVSFNAKDIQIPVY 460

Query: 598 ----GNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFS------ENATNS----IRQYID 643
               G+  D+       R   G     ++  R V+         E  T      I   +D
Sbjct: 461 DTFDGS--DL-------RVLSG-----SISERIVDCIIRLPVKWETTTQFKATHI---LD 503

Query: 644 ------KGI-PLT 649
                  G+  LT
Sbjct: 504 FGPGGASGLGVLT 516



 Score = 64.6 bits (157), Expect = 7e-11
 Identities = 77/458 (16%), Positives = 137/458 (29%), Gaps = 174/458 (37%)

Query: 310 PFIMLGGFFACAGFYVP---YKNELQRLAK--VAQIQEASKQNQHSAQLNFITSGVELV- 363
           P  +  G        VP   +     +L +     + E +   +  A  +  T+  ELV 
Sbjct: 8   PLTLSHGSLEHV-LLVPTASFFI-ASQLQEQFNKILPEPT---EGFAADDEPTTPAELVG 62

Query: 364 --LGSLVSNRLLSSQEDLFLRVSKI-----RRKF-------AVQYGFIVPEIKVTTDISL 409
             LG  VS+ +  S+   F +V  +        +       A+       ++    D +L
Sbjct: 63  KFLG-YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-----AAKLLQENDTTL 116

Query: 410 PEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPG-----DEVKEPAFGMPAFAIME 464
            +    I+ Y T   ++              +             V E    +   AI  
Sbjct: 117 VKTKELIKNYITARIMA-------------KRPFDKKSNSALFRAVGEGNAQL--VAI-- 159

Query: 465 SFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLS-YKD-VKNLISRLDPEYQKLAEE 522
            F      QG     N      +  E     L  L   Y   V +LI        +L   
Sbjct: 160 -FGG----QG-----N---TDDYFEE-----LRDLYQTYHVLVGDLIKFSAETLSELIRT 201

Query: 523 TCSSHISYS-G--IQAVLK----------LLLAEHVSIRNLPLI-LESIAEVAPHSRKTS 568
           T  +   ++ G  I   L+          LL    +S    PLI +  +A    H   T+
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-IS---CPLIGVIQLA----HYVVTA 253

Query: 569 HIVE----QVRIRMAQQICGDLAPTGILNILKLGNH---------------WDMIFYQAI 609
            ++     ++R  +          TG         H               W+  F+ ++
Sbjct: 254 KLLGFTPGELRSYLK-------GATG---------HSQGLVTAVAIAETDSWES-FFVSV 296

Query: 610 QRDSKGECVDFNVEPRAVEM-F-----SENATN------SIRQYID-----KGIP---LT 649
           +              +A+ + F        A        SI +  D     +G+P   L+
Sbjct: 297 R--------------KAITVLFFIGVRCYEAYPNTSLPPSILE--DSLENNEGVPSPMLS 340

Query: 650 IVTLPEIRSYIRMILER-NFPSLAVLSHMEIAKGLKVN 686
           I  L   +  ++  + + N   L     +EI+  L VN
Sbjct: 341 ISNLT--QEQVQDYVNKTN-SHLPAGKQVEIS--L-VN 372



 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 96/507 (18%), Positives = 151/507 (29%), Gaps = 177/507 (34%)

Query: 35  LPIPTVLLDVGLASSIALSILILMVALWIE------KPLEFSSFPTVLLIVTIIRLSLNI 88
           LP PT   + G A+    +    +V  ++       +P +   F  VL       L L  
Sbjct: 41  LPEPT---E-GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLT- 89

Query: 89  ATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAE 148
                 L  G++ +  A       + L+   D  +     +I   I   ++ K       
Sbjct: 90  EFENCYLE-GNDIHALA-------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141

Query: 149 VGA--------RFTLDAIPGKQMAID------ADLSS---GLIEE--EEAKRRRKELEEE 189
             A           L AI G Q   D       DL      L+ +  + +     EL   
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201

Query: 190 SAFFGAMDGASK-FVRG----------------DAIASI-----IITAINI----VGGIV 223
           +        A K F +G                D + SI     +I  I +    V   +
Sbjct: 202 T------LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255

Query: 224 IGCFRYDMSIHHAADVFVRLSVGDGLV--SQ--VPALIISLS---AAFLVSRTTSKGSTN 276
           +G            ++   L    G    SQ  V A+ I+ +    +F VS    +    
Sbjct: 256 LGF--------TPGELRSYLK---GATGHSQGLVTAVAIAETDSWESFFVS---VR---- 297

Query: 277 TAIVEQL------SH--YPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYK 328
            A +  L       +  YP   L  +   I+   + N    P  ML    + +       
Sbjct: 298 KA-ITVLFFIGVRCYEAYPNTSLPPS---ILEDSLENNEGVPSPML----SISN------ 343

Query: 329 NELQRLAKVAQIQEASKQ-NQH---SAQL---------NFITSGVELVLGSLVS-NRLL- 373
             L +     Q+Q+   + N H     Q+         N + SG      SL   N  L 
Sbjct: 344 --LTQ----EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ---SLYGLNLTLR 394

Query: 374 ----SSQEDLFLRVSKI---RRKFAVQYGFI---VP-----------EIK---VTTDISL 409
                S  D     S+I    RK      F+    P            I    V  ++S 
Sbjct: 395 KAKAPSGLD----QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450

Query: 410 PEKGYTIRVYGTTVAISELR-VGEVLV 435
             K   I VY T    S+LR +   + 
Sbjct: 451 NAKDIQIPVYDTFDG-SDLRVLSGSIS 476



 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 63/277 (22%)

Query: 375  SQE-----DLFLRVSKIRRK--------FAVQYGFIVPEIKVTTDISLP-----EKGYTI 416
            SQE     DL+ + SK  +         F   YGF + +I +   ++L      EKG  I
Sbjct: 1626 SQEQGMGMDLY-KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684

Query: 417  R------VYGTTVAISELRVGEVLVILGSGQKP-TFPGDE--VKEPAFGMPAFAIMESFS 467
            R      ++ T V   +L+  ++   +       TF  ++  +    F  PA  +ME  +
Sbjct: 1685 RENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743

Query: 468  -DDLRRQGFHPIDNLAVVLTH-LSEVIRNNLSQLLSYKDVKNLISRLDPEY-----QKLA 520
             +DL+ +G  P D  A    H L E      + L S  DV ++ S ++  +      ++A
Sbjct: 1744 FEDLKSKGLIPAD--ATFAGHSLGE-----YAALASLADVMSIESLVEVVFYRGMTMQVA 1796

Query: 521  ---EETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIR 577
               +E   S  +Y G+ A+    +A   S   L  ++E +       ++T  +VE V   
Sbjct: 1797 VPRDELGRS--NY-GMIAINPGRVAASFSQEALQYVVERVG------KRTGWLVEIVNYN 1847

Query: 578  MAQQ---ICGDLAP----TGILNILKLGNHWDMIFYQ 607
            +  Q     GDL      T +LN +KL    D+I  Q
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKL-QKIDIIELQ 1883



 Score = 33.0 bits (75), Expect = 0.25
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 32/106 (30%)

Query: 34  FLPI--P--TVLLDVGLASSIALSILILMVALWIEKPLEFSSFPT------------VL- 76
           FLP+  P  + LL    AS +    L+     +  K ++   + T            +  
Sbjct: 420 FLPVASPFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477

Query: 77  -LIVTIIRLSLN--IATT-RA--ILSFGHEGYGAAGGIIAGFSSLV 116
            ++  IIRL +     T  +A  IL FG       GG  +G   L 
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFG------PGG-ASGLGVLT 516



 Score = 31.8 bits (72), Expect = 0.51
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 29/139 (20%)

Query: 413  GYTIRVYGTTVAISEL----RVGEVLVILGSGQKPTFPGDEVKEPAFGMPAF---AIMES 465
            G+++  Y    +++++     + EV+   G   +   P DE+    +GM A     +  S
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820

Query: 466  FSDDL---------RRQGFHPIDNLAVVLTHLSE----VIRNNLSQLLSYKDVKNLI--S 510
            FS +          +R G+     L  ++ +  E    V   +L  L +  +V N I   
Sbjct: 1821 FSQEALQYVVERVGKRTGW-----LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875

Query: 511  RLD-PEYQK-LAEETCSSH 527
            ++D  E QK L+ E    H
Sbjct: 1876 KIDIIELQKSLSLEEVEGH 1894


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 6/26 (23%), Positives = 18/26 (69%)

Query: 653 LPEIRSYIRMILERNFPSLAVLSHME 678
           L ++++ +++  + + P+LA+ + ME
Sbjct: 22  LKKLQASLKLYADDSAPALAIKATME 47



 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 17/46 (36%)

Query: 515 EYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLP-LILESIAE 559
           E Q L +           +QA LK L A+  +    P L +++  E
Sbjct: 18  EKQALKK-----------LQASLK-LYADDSA----PALAIKATME 47


>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
           {Thermus thermophilus HB8} PDB: 2yvx_A
          Length = 473

 Score = 32.0 bits (72), Expect = 0.48
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 462 IMESFSDDLRRQGFH--PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE 515
           + +    + R       P    A VL+HLS   +    + L    ++ ++  L  +
Sbjct: 59  LWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLD 114


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 31.8 bits (71), Expect = 0.55
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 166 DADLSSGLIEEEEAKRRRKELEE 188
           + D +S ++E+E  ++ +K+LEE
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEE 122


>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
           {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
           d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
          Length = 643

 Score = 31.1 bits (69), Expect = 0.83
 Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 556 SIAEVAPHSRKTSHIVEQVRIR----MAQQICGDLAPTGILNILKLGNHWDMIFYQAIQR 611
             A  A        +VE+  +     +AQ +        +    +  N  +  + + +  
Sbjct: 40  EAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLED-YVRYVTL 98

Query: 612 DSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649
           D  G           V  ++ +   ++  +   G+P+ 
Sbjct: 99  DMMGLA-----REDLVADYARHVDGTVHLFEKWGLPIW 131


>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
           oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
           c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
          Length = 540

 Score = 30.2 bits (67), Expect = 1.6
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 586 LAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKG 645
            A  GI  +    +  D    +       G C     +  AVE  + NA + ++  ID+G
Sbjct: 48  YAQGGIAAVFDETDSID-SHVEDTLIAGAGIC-----DRHAVEFVASNARSCVQWLIDQG 101

Query: 646 IPLTIVTLPEIRSYIRMILE 665
           +       P       +  E
Sbjct: 102 VLFDTHIQPNGEESYHLTRE 121


>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside
           6-adenyltransferase, PSI-2, structural genomics; 2.65A
           {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
          Length = 294

 Score = 29.8 bits (67), Expect = 2.3
 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 479 DNLAVVLTHLSEVIRNNLSQLLSY-------------KDVKNLISRLDPEYQKLAEETCS 525
           + +   + HL+E++R NL +++++             K+ K +   L  +  +    T S
Sbjct: 175 NEILFAIDHLNEIVRPNLLRMMAWHIASQKGYSFSMGKNYKFMKRYLSNKEWEELMSTYS 234

Query: 526 SHISYSGIQAVLKL 539
            +      +++   
Sbjct: 235 VNGYQEMWKSLFTC 248


>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
           succinate dehydrogenase, complex II, quinol, quinone;
           HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP:
           a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A*
           3cir_A*
          Length = 602

 Score = 29.0 bits (64), Expect = 3.3
 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 6/64 (9%)

Query: 586 LAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKG 645
            A  G   + +  + ++   +          C     E   V+ F  +    + Q    G
Sbjct: 48  AAEGGSAAVAQDHDSFEY-HFHDTVAGGDWLC-----EQDVVDYFVHHCPTEMTQLELWG 101

Query: 646 IPLT 649
            P +
Sbjct: 102 CPWS 105


>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
           4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
           HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
           c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
          Length = 660

 Score = 29.2 bits (64), Expect = 3.6
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 577 RMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATN 636
             AQ   G +  +   + +  G++ D + +    + S   C     + +   MF   A  
Sbjct: 45  AAAQ---GGMQASLGNSKMSDGDNED-LHFMDTVKGSDWGC-----DQKVARMFVNTAPK 95

Query: 637 SIRQYIDKGIPLT 649
           +IR+    G+P T
Sbjct: 96  AIRELAAWGVPWT 108


>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
           enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
           SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
           1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
           1k62_A
          Length = 468

 Score = 29.0 bits (64), Expect = 3.8
 Identities = 49/391 (12%), Positives = 109/391 (27%), Gaps = 43/391 (10%)

Query: 172 GLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGD-----AIASIIITAINIVGGIV-IG 225
           G++ + E ++    LE+ S       G     + D     A    +   I  + G +  G
Sbjct: 55  GILTKTELEKILSGLEKISE--EWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTG 112

Query: 226 CFRYDMSIHHAADVFVRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSH 285
             R D  +     +F++ S+       +  +   +  A +       G T+    + +  
Sbjct: 113 RSRNDQ-VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRW 171

Query: 286 YPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQIQEASK 345
               L  +         +  +     ++  G  A AG  +    E+ R          + 
Sbjct: 172 SQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNS 231

Query: 346 QNQHSAQLNFITSGVELVLGSLVSNRLLSSQEDLFL----RVSKIRRKFAVQYGFIVPEI 401
            +  S +   +         +L+   L    EDL +        +    A   G  +   
Sbjct: 232 MDAISERDFVVEFLSFA---TLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQ 288

Query: 402 KVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFA 461
           K   D     +    RV+G   +I  +             K                 F 
Sbjct: 289 KKNPDSLELIRSKAGRVFGRLASILMV------------LKGLPSTYNKDLQEDKEAVFD 336

Query: 462 IMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAE 521
           ++++ +  L+                   +    L+  L+   V+  +            
Sbjct: 337 VVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPF---------- 386

Query: 522 ETCSSHISYSGIQAVLKLLLAEHVSIRNLPL 552
                  +++     + L   + ++I  L L
Sbjct: 387 -----RQAHTASGKAVHLAETKGITINKLSL 412


>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
           protein, heme protein, iron sulfur protein,
           oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL;
           1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
           2h89_A* 1zoy_A* 1zp0_A*
          Length = 621

 Score = 28.6 bits (63), Expect = 4.8
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 619 DFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649
           D+  +  A+   +E A  ++ +  + G+P +
Sbjct: 88  DWLGDQDAIHYMTEQAPAAVIELENYGMPFS 118


>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
           {Desulfovibrio gigas}
          Length = 662

 Score = 28.4 bits (62), Expect = 5.2
 Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 605 FYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649
           + + ++ D  G           +     +  +S+  + + G+P+ 
Sbjct: 87  YVRMVRTDLMGLV-----REDLIYDLGRHVDDSVHLFEEWGLPVW 126


>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
           dehydrogenase activity, cell inner membrane,
           tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
           {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A*
           2wdv_A*
          Length = 588

 Score = 28.2 bits (62), Expect = 6.1
 Identities = 6/31 (19%), Positives = 14/31 (45%)

Query: 619 DFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649
           D+  +  A+E   +    +I +    G+P +
Sbjct: 77  DYIGDQDAIEYMCKTGPEAILELEHMGLPFS 107


>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor,
           HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET:
           UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A*
           3hqr_A* 2g19_A*
          Length = 247

 Score = 28.3 bits (62), Expect = 6.3
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 457 MPAF-AIMESFSDDLRRQGFHPIDNLAVVLTH-LSEVIRNNLSQL 499
           +PA    +E     + + G   +D+    L     + I + +  L
Sbjct: 9   LPALKLALEYIVPCMNKHGICVVDDF---LGKETGQQIGDEVRAL 50


>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
           ER, golgi, transport, disulfide bond, endoplasmic
           reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB:
           2vrg_A
          Length = 143

 Score = 28.1 bits (62), Expect = 6.4
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 165 IDADLSSGLIEEEEAKRRRKELEEESAFFGAMD-GASKFVRGDAIASIIITAINIVGGIV 223
           I   L  G+I + EA+   +EL+    +F   D   +  + G  +++ I       G   
Sbjct: 49  IMEHLE-GVINKPEAEMSPQELQLH--YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQ 105

Query: 224 IGCFRYDMSIHHAADVFVRLSV-GDGLVS 251
                 D  I+    V        DG + 
Sbjct: 106 APLMSEDELINIIDGVLRDDDKNNDGYID 134


>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger,
           propeller cluster, helical repeats, cullin repeats,
           protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP:
           a.4.5.34 a.118.17.1 e.40.1.1
          Length = 759

 Score = 27.7 bits (61), Expect = 8.6
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 482 AVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE--YQKLAEETCSSHISYSGIQAVLKL 539
           AV     S  IR NL +L  Y+ V+NL S       Y++L  + C  H+       +L  
Sbjct: 69  AVRAVQSSTSIRYNLEEL--YQAVENLCSHKVSPMLYKQL-RQACEDHVQ----AQILPF 121

Query: 540 LLAEHVSIRNLPLILESIAEVAPHSRKT------------SHIVEQVRIRMAQQICGDLA 587
                 S+  L  I     +   H R+             +++++   +     +  +L 
Sbjct: 122 REDSLDSVLFLKKINTCWQD---HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELF 178

Query: 588 PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSE 632
            T I++   + +         I+R+  GE VD ++    + M S+
Sbjct: 179 RTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSD 223


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.324    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,677,483
Number of extensions: 268119
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 38
Length of query: 692
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 593
Effective length of database: 3,293,074
Effective search space: 1952792882
Effective search space used: 1952792882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.3 bits)