RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] (692 letters) >3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis} Length = 382 Score = 265 bits (678), Expect = 2e-71 Identities = 97/375 (25%), Positives = 177/375 (47%), Gaps = 8/375 (2%) Query: 324 YVPYKNELQRLAKVAQIQEASKQNQHSAQLNFI----TSGVELVLG-SLVSNRLLSSQED 378 Y K+ ++ ++E ++ ++ + + + +E G L+ + D Sbjct: 9 YTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLADANQGGD 68 Query: 379 LFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILG 438 L R+ IRR+ A++ G ++P +++ +I+L Y +++ G VA EL + L + Sbjct: 69 LLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYLAMSP 128 Query: 439 SGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQ 498 + + G E EP+FG+PA I E+ D+ G+ +D +VV TH++E I+ + + Sbjct: 129 TPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQHAHE 188 Query: 499 LLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIA 558 L+ ++ K LI L Y L EE + +S IQ VL LL E VSIRNL I E++A Sbjct: 189 LIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTIFETLA 248 Query: 559 EVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGEC 617 + + + + E R +A+QI A +L ++ + +Q+ G Sbjct: 249 DYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTEHGN- 307 Query: 618 VDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHM 677 ++EP E + Q + ++ P +R Y++ +LER FP L VLS+ Sbjct: 308 -YLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLPVLSYN 366 Query: 678 EIAKGLKVNILGTIS 692 E+ ++V +G + Sbjct: 367 ELEANVEVQSIGVVD 381 >3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium} Length = 389 Score = 260 bits (665), Expect = 8e-70 Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 8/316 (2%) Query: 378 DLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVIL 437 +L R+ IR+KFA GF+ P + + ++ L Y I + G + + G L I Sbjct: 79 ELLGRIRSIRKKFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 138 Query: 438 GSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLS 497 T PG++ +PAFG+ A I + + + QGF ++ VV THL+ +I + Sbjct: 139 PGTAAGTLPGEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQFSA 198 Query: 498 QLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESI 557 +L ++ + L+ R+ E KL E+ ++ + + VL+ LLAE V IR++ ILE++ Sbjct: 199 ELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILETL 258 Query: 558 AEVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGE 616 AE AP + VR+ + + I P + ++ L + + QA+Q Sbjct: 259 AEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQALQGGG--- 315 Query: 617 CVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSH 676 +EP + ++ + G P ++ +R + L R+ P L VLS+ Sbjct: 316 ----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 371 Query: 677 MEIAKGLKVNILGTIS 692 +E++ + + TI Sbjct: 372 LELSDNRHIRMTATIG 387 >2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A Length = 333 Score = 253 bits (646), Expect = 1e-67 Identities = 72/310 (23%), Positives = 144/310 (46%), Gaps = 3/310 (0%) Query: 382 RVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQ 441 ++R +F + YG +PE+ + L + + + V + + V+ S + Sbjct: 27 LAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDE 86 Query: 442 KPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLS 501 +F + F + + LR G+ + L + L+ + N+++ Sbjct: 87 VVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFG 146 Query: 502 YKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVA 561 ++ K+++ +L+ ++ L +E H + I VL+ LL+E VS+RN+ LI+E++A A Sbjct: 147 IQETKHMLDQLEAKFPDLLKE-VLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWA 205 Query: 562 PHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFN 621 P + ++VE +R MA+ IC A G L + + + + + I++ S + Sbjct: 206 PREKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGST--FLS 263 Query: 622 VEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAK 681 ++P A + T + + L ++T ++R +I+ ++E FP L VLS EIA Sbjct: 264 LDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIAD 323 Query: 682 GLKVNILGTI 691 VN++ TI Sbjct: 324 SKSVNVIKTI 333 >3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III secretion, cytoplasmic FRAG protein transport; 2.40A {Helicobacter pylori} Length = 365 Score = 241 bits (616), Expect = 4e-64 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 8/337 (2%) Query: 360 VELVLG-SLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRV 418 +EL LG L+S + DL R+ IR+K A YGF++P+I++ ++ LP Y I++ Sbjct: 31 LELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKL 90 Query: 419 YGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPI 478 G + + + L + G KEPAFGM A I ++ QG+ I Sbjct: 91 KGIVIGEGMVMPDKFLAMNTGFVNREIEGIPTKEPAFGMDALWIDAKNKEEAIIQGYTII 150 Query: 479 DNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLK 538 D V+ TH SE+++ ++ +VK+L+ RL +Y + EE+ I I++VL+ Sbjct: 151 DPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEES--KKIPTGAIRSVLQ 208 Query: 539 LLLAEHVSIRNLPLILESIAEVAPHSRK-TSHIVEQVRIRMAQQICGDLAPT-GILNILK 596 LL E + I+++ ILE+I ++AP + + + EQVR R+++ I G L L Sbjct: 209 ALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAFKSEDGRLKFLT 268 Query: 597 LGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGI-PLTIVTLPE 655 + ++ + + + ++ E + + + KGI P+ ++ P Sbjct: 269 FSTDSEQFLLNKLRENGTSK--SLLLNVGELQKLIEGVSEEAMKVLQKGIAPVILIVEPN 326 Query: 656 IRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 +R + +E+ + VLSH E+ LGTI Sbjct: 327 LRKALSNQMEQARIDVVVLSHAELDPNSNFEALGTIH 363 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 68.8 bits (168), Expect = 4e-12 Identities = 96/613 (15%), Positives = 171/613 (27%), Gaps = 256/613 (41%) Query: 196 MDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSI----HHAA----DVFVR-LS-V 245 MD S R + ++ G + + + A + F + L Sbjct: 1 MDAYS--TR-----PLTLSH---------GSLEHVLLVPTASFFIASQLQEQFNKILPEP 44 Query: 246 GDGLVSQ-VPALIISLSAAFL--VSRTTSKGSTNTAIVEQLSHYPRAL--LISAF---FM 297 +G + P L FL VS + + + L ++ F ++ Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSK--------VGQFDQVLNLCLTEFENCYL 96 Query: 298 I---VLSVMPNLPAFPFIMLGG--------FFACAGFYVPY-KNELQRLAKVAQIQEASK 345 + ++ L L A P+ K L + Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG------ 150 Query: 346 QNQHSAQLNFITSG-----------VEL------VLGSLV---SNRL--LSSQEDLFLRV 383 + +AQL I G +L ++G L+ + L L Sbjct: 151 --EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL---DA 205 Query: 384 SKIRRKFAVQYGFIV------PEIKVTTD------ISLPEKG------Y--TIRVYGTTV 423 K+ + G + P D IS P G Y T ++ G T Sbjct: 206 EKVFTQ-----GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260 Query: 424 AISELRVGEVLVIL----GSGQKPTFPGDEVKEPAFGM-PAFAIM-----ESFSDDLRR- 472 GE+ L G Q G+ A AI ESF +R+ Sbjct: 261 -------GELRSYLKGATGHSQ--------------GLVTAVAIAETDSWESFFVSVRKA 299 Query: 473 ------------QGFHPIDNL--AVV---LTH--------LSEVIRNNLSQLLSYKDVKN 507 + + P +L +++ L + LS I N L+ + V++ Sbjct: 300 ITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLS--ISN-----LTQEQVQD 351 Query: 508 LISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHV-SIRNLPLILESI--------A 558 +++ + L + S + L+++ S+ L L L + Sbjct: 352 YVNKTN---SHLPAG---KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405 Query: 559 EVAPHS-RKT--------------SHIVEQVRIRMAQQICGDLAPTGIL---NILKL--- 597 + P S RK SH++ + I DL + +++ Sbjct: 406 RI-PFSERKLKFSNRFLPVASPFHSHLLVPA----SDLINKDLVKNNVSFNAKDIQIPVY 460 Query: 598 ----GNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFS------ENATNS----IRQYID 643 G+ D+ R G ++ R V+ E T I +D Sbjct: 461 DTFDGS--DL-------RVLSG-----SISERIVDCIIRLPVKWETTTQFKATHI---LD 503 Query: 644 ------KGI-PLT 649 G+ LT Sbjct: 504 FGPGGASGLGVLT 516 Score = 64.6 bits (157), Expect = 7e-11 Identities = 77/458 (16%), Positives = 137/458 (29%), Gaps = 174/458 (37%) Query: 310 PFIMLGGFFACAGFYVP---YKNELQRLAK--VAQIQEASKQNQHSAQLNFITSGVELV- 363 P + G VP + +L + + E + + A + T+ ELV Sbjct: 8 PLTLSHGSLEHV-LLVPTASFFI-ASQLQEQFNKILPEPT---EGFAADDEPTTPAELVG 62 Query: 364 --LGSLVSNRLLSSQEDLFLRVSKI-----RRKF-------AVQYGFIVPEIKVTTDISL 409 LG VS+ + S+ F +V + + A+ ++ D +L Sbjct: 63 KFLG-YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-----AAKLLQENDTTL 116 Query: 410 PEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPG-----DEVKEPAFGMPAFAIME 464 + I+ Y T ++ + V E + AI Sbjct: 117 VKTKELIKNYITARIMA-------------KRPFDKKSNSALFRAVGEGNAQL--VAI-- 159 Query: 465 SFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLS-YKD-VKNLISRLDPEYQKLAEE 522 F QG N + E L L Y V +LI +L Sbjct: 160 -FGG----QG-----N---TDDYFEE-----LRDLYQTYHVLVGDLIKFSAETLSELIRT 201 Query: 523 TCSSHISYS-G--IQAVLK----------LLLAEHVSIRNLPLI-LESIAEVAPHSRKTS 568 T + ++ G I L+ LL +S PLI + +A H T+ Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-IS---CPLIGVIQLA----HYVVTA 253 Query: 569 HIVE----QVRIRMAQQICGDLAPTGILNILKLGNH---------------WDMIFYQAI 609 ++ ++R + TG H W+ F+ ++ Sbjct: 254 KLLGFTPGELRSYLK-------GATG---------HSQGLVTAVAIAETDSWES-FFVSV 296 Query: 610 QRDSKGECVDFNVEPRAVEM-F-----SENATN------SIRQYID-----KGIP---LT 649 + +A+ + F A SI + D +G+P L+ Sbjct: 297 R--------------KAITVLFFIGVRCYEAYPNTSLPPSILE--DSLENNEGVPSPMLS 340 Query: 650 IVTLPEIRSYIRMILER-NFPSLAVLSHMEIAKGLKVN 686 I L + ++ + + N L +EI+ L VN Sbjct: 341 ISNLT--QEQVQDYVNKTN-SHLPAGKQVEIS--L-VN 372 Score = 56.1 bits (135), Expect = 3e-08 Identities = 96/507 (18%), Positives = 151/507 (29%), Gaps = 177/507 (34%) Query: 35 LPIPTVLLDVGLASSIALSILILMVALWIE------KPLEFSSFPTVLLIVTIIRLSLNI 88 LP PT + G A+ + +V ++ +P + F VL L L Sbjct: 41 LPEPT---E-GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLT- 89 Query: 89 ATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAE 148 L G++ + A + L+ D + +I I ++ K Sbjct: 90 EFENCYLE-GNDIHALA-------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141 Query: 149 VGA--------RFTLDAIPGKQMAID------ADLSS---GLIEE--EEAKRRRKELEEE 189 A L AI G Q D DL L+ + + + EL Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201 Query: 190 SAFFGAMDGASK-FVRG----------------DAIASI-----IITAINI----VGGIV 223 + A K F +G D + SI +I I + V + Sbjct: 202 T------LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255 Query: 224 IGCFRYDMSIHHAADVFVRLSVGDGLV--SQ--VPALIISLS---AAFLVSRTTSKGSTN 276 +G ++ L G SQ V A+ I+ + +F VS + Sbjct: 256 LGF--------TPGELRSYLK---GATGHSQGLVTAVAIAETDSWESFFVS---VR---- 297 Query: 277 TAIVEQL------SH--YPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYK 328 A + L + YP L + I+ + N P ML + + Sbjct: 298 KA-ITVLFFIGVRCYEAYPNTSLPPS---ILEDSLENNEGVPSPML----SISN------ 343 Query: 329 NELQRLAKVAQIQEASKQ-NQH---SAQL---------NFITSGVELVLGSLVS-NRLL- 373 L + Q+Q+ + N H Q+ N + SG SL N L Sbjct: 344 --LTQ----EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ---SLYGLNLTLR 394 Query: 374 ----SSQEDLFLRVSKI---RRKFAVQYGFI---VP-----------EIK---VTTDISL 409 S D S+I RK F+ P I V ++S Sbjct: 395 KAKAPSGLD----QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450 Query: 410 PEKGYTIRVYGTTVAISELR-VGEVLV 435 K I VY T S+LR + + Sbjct: 451 NAKDIQIPVYDTFDG-SDLRVLSGSIS 476 Score = 55.7 bits (134), Expect = 3e-08 Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 63/277 (22%) Query: 375 SQE-----DLFLRVSKIRRK--------FAVQYGFIVPEIKVTTDISLP-----EKGYTI 416 SQE DL+ + SK + F YGF + +I + ++L EKG I Sbjct: 1626 SQEQGMGMDLY-KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684 Query: 417 R------VYGTTVAISELRVGEVLVILGSGQKP-TFPGDE--VKEPAFGMPAFAIMESFS 467 R ++ T V +L+ ++ + TF ++ + F PA +ME + Sbjct: 1685 RENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743 Query: 468 -DDLRRQGFHPIDNLAVVLTH-LSEVIRNNLSQLLSYKDVKNLISRLDPEY-----QKLA 520 +DL+ +G P D A H L E + L S DV ++ S ++ + ++A Sbjct: 1744 FEDLKSKGLIPAD--ATFAGHSLGE-----YAALASLADVMSIESLVEVVFYRGMTMQVA 1796 Query: 521 ---EETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIR 577 +E S +Y G+ A+ +A S L ++E + ++T +VE V Sbjct: 1797 VPRDELGRS--NY-GMIAINPGRVAASFSQEALQYVVERVG------KRTGWLVEIVNYN 1847 Query: 578 MAQQ---ICGDLAP----TGILNILKLGNHWDMIFYQ 607 + Q GDL T +LN +KL D+I Q Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKL-QKIDIIELQ 1883 Score = 33.0 bits (75), Expect = 0.25 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 32/106 (30%) Query: 34 FLPI--P--TVLLDVGLASSIALSILILMVALWIEKPLEFSSFPT------------VL- 76 FLP+ P + LL AS + L+ + K ++ + T + Sbjct: 420 FLPVASPFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477 Query: 77 -LIVTIIRLSLN--IATT-RA--ILSFGHEGYGAAGGIIAGFSSLV 116 ++ IIRL + T +A IL FG GG +G L Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFG------PGG-ASGLGVLT 516 Score = 31.8 bits (72), Expect = 0.51 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 29/139 (20%) Query: 413 GYTIRVYGTTVAISEL----RVGEVLVILGSGQKPTFPGDEVKEPAFGMPAF---AIMES 465 G+++ Y +++++ + EV+ G + P DE+ +GM A + S Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820 Query: 466 FSDDL---------RRQGFHPIDNLAVVLTHLSE----VIRNNLSQLLSYKDVKNLI--S 510 FS + +R G+ L ++ + E V +L L + +V N I Sbjct: 1821 FSQEALQYVVERVGKRTGW-----LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875 Query: 511 RLD-PEYQK-LAEETCSSH 527 ++D E QK L+ E H Sbjct: 1876 KIDIIELQKSLSLEEVEGH 1894 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.0 bits (79), Expect = 0.052 Identities = 6/26 (23%), Positives = 18/26 (69%) Query: 653 LPEIRSYIRMILERNFPSLAVLSHME 678 L ++++ +++ + + P+LA+ + ME Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47 Score = 29.6 bits (65), Expect = 2.3 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 17/46 (36%) Query: 515 EYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLP-LILESIAE 559 E Q L + +QA LK L A+ + P L +++ E Sbjct: 18 EKQALKK-----------LQASLK-LYADDSA----PALAIKATME 47 >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A Length = 473 Score = 32.0 bits (72), Expect = 0.48 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 462 IMESFSDDLRRQGFH--PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE 515 + + + R P A VL+HLS + + L ++ ++ L + Sbjct: 59 LWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLD 114 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.8 bits (71), Expect = 0.55 Identities = 8/23 (34%), Positives = 17/23 (73%) Query: 166 DADLSSGLIEEEEAKRRRKELEE 188 + D +S ++E+E ++ +K+LEE Sbjct: 100 ELDAASKVMEQEWREKAKKDLEE 122 >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643 Score = 31.1 bits (69), Expect = 0.83 Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 10/98 (10%) Query: 556 SIAEVAPHSRKTSHIVEQVRIR----MAQQICGDLAPTGILNILKLGNHWDMIFYQAIQR 611 A A +VE+ + +AQ + + + N + + + + Sbjct: 40 EAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLED-YVRYVTL 98 Query: 612 DSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649 D G V ++ + ++ + G+P+ Sbjct: 99 DMMGLA-----REDLVADYARHVDGTVHLFEKWGLPIW 131 >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540 Score = 30.2 bits (67), Expect = 1.6 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 6/80 (7%) Query: 586 LAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKG 645 A GI + + D + G C + AVE + NA + ++ ID+G Sbjct: 48 YAQGGIAAVFDETDSID-SHVEDTLIAGAGIC-----DRHAVEFVASNARSCVQWLIDQG 101 Query: 646 IPLTIVTLPEIRSYIRMILE 665 + P + E Sbjct: 102 VLFDTHIQPNGEESYHLTRE 121 >2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13 Length = 294 Score = 29.8 bits (67), Expect = 2.3 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Query: 479 DNLAVVLTHLSEVIRNNLSQLLSY-------------KDVKNLISRLDPEYQKLAEETCS 525 + + + HL+E++R NL +++++ K+ K + L + + T S Sbjct: 175 NEILFAIDHLNEIVRPNLLRMMAWHIASQKGYSFSMGKNYKFMKRYLSNKEWEELMSTYS 234 Query: 526 SHISYSGIQAVLKL 539 + +++ Sbjct: 235 VNGYQEMWKSLFTC 248 >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* Length = 602 Score = 29.0 bits (64), Expect = 3.3 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 6/64 (9%) Query: 586 LAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKG 645 A G + + + ++ + C E V+ F + + Q G Sbjct: 48 AAEGGSAAVAQDHDSFEY-HFHDTVAGGDWLC-----EQDVVDYFVHHCPTEMTQLELWG 101 Query: 646 IPLT 649 P + Sbjct: 102 CPWS 105 >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660 Score = 29.2 bits (64), Expect = 3.6 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%) Query: 577 RMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATN 636 AQ G + + + + G++ D + + + S C + + MF A Sbjct: 45 AAAQ---GGMQASLGNSKMSDGDNED-LHFMDTVKGSDWGC-----DQKVARMFVNTAPK 95 Query: 637 SIRQYIDKGIPLT 649 +IR+ G+P T Sbjct: 96 AIRELAAWGVPWT 108 >1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Length = 468 Score = 29.0 bits (64), Expect = 3.8 Identities = 49/391 (12%), Positives = 109/391 (27%), Gaps = 43/391 (10%) Query: 172 GLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGD-----AIASIIITAINIVGGIV-IG 225 G++ + E ++ LE+ S G + D A + I + G + G Sbjct: 55 GILTKTELEKILSGLEKISE--EWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTG 112 Query: 226 CFRYDMSIHHAADVFVRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSH 285 R D + +F++ S+ + + + A + G T+ + + Sbjct: 113 RSRNDQ-VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRW 171 Query: 286 YPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQIQEASK 345 L + + + ++ G A AG + E+ R + Sbjct: 172 SQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNS 231 Query: 346 QNQHSAQLNFITSGVELVLGSLVSNRLLSSQEDLFL----RVSKIRRKFAVQYGFIVPEI 401 + S + + +L+ L EDL + + A G + Sbjct: 232 MDAISERDFVVEFLSFA---TLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQ 288 Query: 402 KVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFA 461 K D + RV+G +I + K F Sbjct: 289 KKNPDSLELIRSKAGRVFGRLASILMV------------LKGLPSTYNKDLQEDKEAVFD 336 Query: 462 IMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAE 521 ++++ + L+ + L+ L+ V+ + Sbjct: 337 VVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPF---------- 386 Query: 522 ETCSSHISYSGIQAVLKLLLAEHVSIRNLPL 552 +++ + L + ++I L L Sbjct: 387 -----RQAHTASGKAVHLAETKGITINKLSL 412 >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 1zoy_A* 1zp0_A* Length = 621 Score = 28.6 bits (63), Expect = 4.8 Identities = 6/31 (19%), Positives = 16/31 (51%) Query: 619 DFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649 D+ + A+ +E A ++ + + G+P + Sbjct: 88 DWLGDQDAIHYMTEQAPAAVIELENYGMPFS 118 >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 662 Score = 28.4 bits (62), Expect = 5.2 Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 5/45 (11%) Query: 605 FYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649 + + ++ D G + + +S+ + + G+P+ Sbjct: 87 YVRMVRTDLMGLV-----REDLIYDLGRHVDDSVHLFEEWGLPVW 126 >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* Length = 588 Score = 28.2 bits (62), Expect = 6.1 Identities = 6/31 (19%), Positives = 14/31 (45%) Query: 619 DFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649 D+ + A+E + +I + G+P + Sbjct: 77 DYIGDQDAIEYMCKTGPEAILELEHMGLPFS 107 >2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2g19_A* Length = 247 Score = 28.3 bits (62), Expect = 6.3 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 5/45 (11%) Query: 457 MPAF-AIMESFSDDLRRQGFHPIDNLAVVLTH-LSEVIRNNLSQL 499 +PA +E + + G +D+ L + I + + L Sbjct: 9 LPALKLALEYIVPCMNKHGICVVDDF---LGKETGQQIGDEVRAL 50 >3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endoplasmic reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A Length = 143 Score = 28.1 bits (62), Expect = 6.4 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Query: 165 IDADLSSGLIEEEEAKRRRKELEEESAFFGAMD-GASKFVRGDAIASIIITAINIVGGIV 223 I L G+I + EA+ +EL+ +F D + + G +++ I G Sbjct: 49 IMEHLE-GVINKPEAEMSPQELQLH--YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQ 105 Query: 224 IGCFRYDMSIHHAADVFVRLSV-GDGLVS 251 D I+ V DG + Sbjct: 106 APLMSEDELINIIDGVLRDDDKNNDGYID 134 >2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 Length = 759 Score = 27.7 bits (61), Expect = 8.6 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 24/165 (14%) Query: 482 AVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE--YQKLAEETCSSHISYSGIQAVLKL 539 AV S IR NL +L Y+ V+NL S Y++L + C H+ +L Sbjct: 69 AVRAVQSSTSIRYNLEEL--YQAVENLCSHKVSPMLYKQL-RQACEDHVQ----AQILPF 121 Query: 540 LLAEHVSIRNLPLILESIAEVAPHSRKT------------SHIVEQVRIRMAQQICGDLA 587 S+ L I + H R+ +++++ + + +L Sbjct: 122 REDSLDSVLFLKKINTCWQD---HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELF 178 Query: 588 PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSE 632 T I++ + + I+R+ GE VD ++ + M S+ Sbjct: 179 RTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSD 223 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.139 0.392 Gapped Lambda K H 0.267 0.0568 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 5,677,483 Number of extensions: 268119 Number of successful extensions: 1078 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1060 Number of HSP's successfully gapped: 38 Length of query: 692 Length of database: 5,693,230 Length adjustment: 99 Effective length of query: 593 Effective length of database: 3,293,074 Effective search space: 1952792882 Effective search space used: 1952792882 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 60 (27.3 bits)