Query gi|254780514|ref|YP_003064927.1| type II restriction endonuclease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs 7 out of 9
Neff 1.7
Searched_HMMs 13730
Date Wed Jun 1 10:01:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780514.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1na6a2 c.52.1.22 (A:179-398) 97.5 1.2E-05 8.7E-10 51.4 1.7 31 61-91 75-105 (220)
2 d1xsza1 a.118.3.1 (A:1-197) Ra 25.8 16 0.0012 15.5 1.9 79 11-91 58-145 (197)
3 d1r8se_ a.118.3.1 (E:) Exchang 23.0 19 0.0014 15.1 1.9 79 11-91 50-137 (187)
4 d1gg2g_ a.137.3.1 (G:) Transdu 14.0 38 0.0028 13.4 2.8 35 18-53 5-39 (54)
5 d1hyua3 c.47.1.2 (A:1-102) Alk 11.0 47 0.0034 12.8 2.1 16 73-88 82-97 (102)
6 d1v54e_ a.118.11.1 (E:) Cytoch 10.8 48 0.0035 12.8 1.5 50 8-59 29-81 (105)
7 d1rq6a_ a.4.15.1 (A:) ribosoma 10.8 48 0.0035 12.8 1.7 35 41-100 28-62 (62)
8 d1a6sa_ a.61.1.4 (A:) GAG poly 10.0 51 0.0037 12.6 1.9 24 38-61 2-25 (87)
9 d1dqna_ c.61.1.1 (A:) Guanine 9.3 22 0.0016 14.7 -0.8 22 54-75 193-216 (230)
10 d1d0xa2 c.37.1.9 (A:2-33,A:80- 9.1 49 0.0036 12.7 0.9 38 42-79 91-141 (712)
No 1
>d1na6a2 c.52.1.22 (A:179-398) Restriction endonuclease EcoRII, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.54 E-value=1.2e-05 Score=51.43 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=28.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6310322355433045799999999739999
Q gi|254780514|r 61 EWVLSNTQSRRSRDGQEFEYIIYSLYNINTF 91 (110)
Q Consensus 61 ~l~lsntqsrrsrag~~fe~iiY~~Yn~~t~ 91 (110)
.+.||++|+|+||||+.||.+++.|++-+..
T Consensus 75 ~~slSv~nrRKSRAG~sfE~hl~~if~~~gi 105 (220)
T d1na6a2 75 ALANSVSNRRKSRAGKSLELHLEHLFIEHGL 105 (220)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999998877503305699999999996699
No 2
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=25.79 E-value=16 Score=15.51 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=43.3
Q ss_pred HHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH--HCC---CC----HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 77641036999999999637964200157999999996321--201---10----4457631032235543304579999
Q gi|254780514|r 11 ISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDY--MSK---IT----PYLYEWVLSNTQSRRSRDGQEFEYI 81 (110)
Q Consensus 11 i~k~~EtPK~ll~~llselin~~t~K~~e~~etir~~~gdY--~~~---i~----P~iy~l~lsntqsrrsrag~~fe~i 81 (110)
||..+-.|+.+-..++.+.++.-+++++.+-+++|.+|+.. ||+ |- -+--.|+..|...-.|.+ .--.+
T Consensus 58 iGeyLg~~~~~n~~vl~~y~~~f~f~~~~id~ALR~~l~~f~LpgE~Q~IdRile~Fa~~y~~~Np~~~~~~d--~v~~L 135 (197)
T d1xsza1 58 VGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNAD--AAYLL 135 (197)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHH--HHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC--HHHHH
T ss_conf 9999818966789999999984785799789999999984208860899999999999999985929999965--88999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999739999
Q gi|254780514|r 82 IYSLYNINTF 91 (110)
Q Consensus 82 iY~~Yn~~t~ 91 (110)
.||+-=|||=
T Consensus 136 ~~siimLnTD 145 (197)
T d1xsza1 136 AFQTIMLNTD 145 (197)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
T ss_conf 9999998112
No 3
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.99 E-value=19 Score=15.09 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=42.1
Q ss_pred HHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH--C---CCC----HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 776410369999999996379642001579999999963212--0---110----4457631032235543304579999
Q gi|254780514|r 11 ISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYM--S---KIT----PYLYEWVLSNTQSRRSRDGQEFEYI 81 (110)
Q Consensus 11 i~k~~EtPK~ll~~llselin~~t~K~~e~~etir~~~gdY~--~---~i~----P~iy~l~lsntqsrrsrag~~fe~i 81 (110)
||..+.-|+.+-.+++.+.++.-.++++.+-+++|.+|+... | .|- -+--.|+..|...-.| -..--.+
T Consensus 50 ige~Lg~~~~~~~~vl~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~--~d~v~~l 127 (187)
T d1r8se_ 50 IGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQS--TDTCYVL 127 (187)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSC--HHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHH
T ss_conf 99997156678999999998724768994999999999846189718999999999999999869886788--7799999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999739999
Q gi|254780514|r 82 IYSLYNINTF 91 (110)
Q Consensus 82 iY~~Yn~~t~ 91 (110)
.||+-=+||=
T Consensus 128 ~~siimLnTd 137 (187)
T d1r8se_ 128 SYSVIMLNTD 137 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999765
No 4
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.02 E-value=38 Score=13.35 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 699999999963796420015799999999632120
Q gi|254780514|r 18 PKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMS 53 (110)
Q Consensus 18 PK~ll~~llselin~~t~K~~e~~etir~~~gdY~~ 53 (110)
-|+..+ .|..-.+.++.|-+...+.+.++|.+|+.
T Consensus 5 ~rk~Ve-qLr~e~~~~RikvS~aa~~l~~y~e~~~~ 39 (54)
T d1gg2g_ 5 ARKLVE-QLKMEANIDRIKVSKAAADLMAYCEAHAK 39 (54)
T ss_dssp HHHHHH-HHHHHHSSCCCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999-99999687420499999999999996276
No 5
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=11.01 E-value=47 Score=12.80 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3045799999999739
Q gi|254780514|r 73 RDGQEFEYIIYSLYNI 88 (110)
Q Consensus 73 rag~~fe~iiY~~Yn~ 88 (110)
-+|.||-+.|-+|||.
T Consensus 82 P~GhEF~Slilail~v 97 (102)
T d1hyua3 82 PLGHEFTSLVLALLWT 97 (102)
T ss_dssp CCGGGHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC
T ss_conf 8851088999999841
No 6
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.79 E-value=48 Score=12.75 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=26.3
Q ss_pred HHHHHH--HHCCHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999776--41036999999999-63796420015799999999632120110445
Q gi|254780514|r 8 LKNISN--NYEVPKMLITELST-ELFNLKTANQNFFHNTLTKKFGDYMSKITPYL 59 (110)
Q Consensus 8 ~~~i~k--~~EtPK~ll~~lls-elin~~t~K~~e~~etir~~~gdY~~~i~P~i 59 (110)
||++.- ++--||-+.-++-- -++| --+--.-+.|+||.+||+- ..|.|||
T Consensus 29 mN~l~~~DlVPeP~Ii~aALrAcRRvN-D~alAVR~lE~vK~K~~~~-k~~y~yi 81 (105)
T d1v54e_ 29 MNTLVGYDLVPEPKIIDAALRACRRLN-DFASAVRILEVVKDKAGPH-KEIYPYV 81 (105)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTC-TTHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_conf 999851566899099999999998840-0799999999999873470-8899999
No 7
>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.78 E-value=48 Score=12.75 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999963212011044576310322355433045799999999739999999974220
Q gi|254780514|r 41 HNTLTKKFGDYMSKITPYLYEWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKK 100 (110)
Q Consensus 41 ~etir~~~gdY~~~i~P~iy~l~lsntqsrrsrag~~fe~iiY~~Yn~~t~~~~~~~~~~ 100 (110)
.++=++.|.|++- .+|.+-|. .|-.||||||...|
T Consensus 28 F~~NK~~v~e~a~-------------i~SKklRN------------~IAGYvTrl~k~~k 62 (62)
T d1rq6a_ 28 FDTNKKLVEEFST-------------VSTKHLRN------------KIAGYITRIISQQK 62 (62)
T ss_dssp HHHHHHHHHTTCC-------------CSSTTHHH------------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC-------------CCCHHHHH------------HHHHHHHHHHHHCC
T ss_conf 8887899999813-------------88665767------------99989999998229
No 8
>d1a6sa_ a.61.1.4 (A:) GAG polyprotein M-domain {Rous sarcoma virus [TaxId: 11886]}
Probab=10.02 E-value=51 Score=12.59 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 579999999963212011044576
Q gi|254780514|r 38 NFFHNTLTKKFGDYMSKITPYLYE 61 (110)
Q Consensus 38 ~e~~etir~~~gdY~~~i~P~iy~ 61 (110)
.-+..-+..+|-+|-|+.+|---+
T Consensus 2 e~VikVl~~~ck~~~gk~spskKe 25 (87)
T d1a6sa_ 2 EAVIKVISSACKTYCGKTSPSKKE 25 (87)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCSSH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 069999999999874778983889
No 9
>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId: 5741]}
Probab=9.34 E-value=22 Score=14.69 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHCCC--HHHHHHHH
Q ss_conf 11044576310322--35543304
Q gi|254780514|r 54 KITPYLYEWVLSNT--QSRRSRDG 75 (110)
Q Consensus 54 ~i~P~iy~l~lsnt--qsrrsrag 75 (110)
|=.|+||.+..|+. +++|+|+-
T Consensus 193 RnLp~Iy~l~~~~~~~~~~~~~~~ 216 (230)
T d1dqna_ 193 RGWAHLFDINLSESEVTEFRRRLT 216 (230)
T ss_dssp TTCCSEEESSSCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHCH
T ss_conf 898916997520123424442053
No 10
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=9.10 E-value=49 Score=12.69 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-------------CHHHHHHHHHHHH
Q ss_conf 9999996321201104457631032-------------2355433045799
Q gi|254780514|r 42 NTLTKKFGDYMSKITPYLYEWVLSN-------------TQSRRSRDGQEFE 79 (110)
Q Consensus 42 etir~~~gdY~~~i~P~iy~l~lsn-------------tqsrrsrag~~fe 79 (110)
+.++.+.+.-.+...||||.++.+- --|-.|-|||+.-
T Consensus 91 ~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~ 141 (712)
T d1d0xa2 91 EMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTEN 141 (712)
T ss_dssp HHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf 999997188768899859999999999999738991699967998888999
Done!