RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780514|ref|YP_003064927.1| type II restriction
endonuclease [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction
           endonuclease, nucleotide flipping, base extrusion,
           hydrolase/DNA complex; HET: DNA; 1.70A {Enterobacter
           cloacae} PDB: 2fqz_A* (A:1-137)
          Length = 137

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 24  ELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
           E +T + +     +     +      D+  +   ++Y+  LSNTQSRRSR G+EFE I+
Sbjct: 70  EFTTRMLSYLIDEERIKDMSPYDAIRDFTMEYPTHIYDLALSNTQSRRSRAGKEFESIL 128


>3he1_A Major exported HCP3 protein; structural genomics, APC22128,
           HCPC, secretion, virulence, PSI-2, protein structure
           initiative; 2.10A {Pseudomonas aeruginosa} (A:)
          Length = 195

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 12/53 (22%)

Query: 43  TLTKKFGDYMSKITPYLYEWVLSNTQ--------SRRSRDGQEFEYIIYSLYN 87
            +TK       K +P L   + S  +         R S  G +  Y    L +
Sbjct: 91  VITK----VFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLED 139


>1u7i_A Hypothetical protein; structural genomics, PSI, protein
          structure initiative, midwest center for structural
          genomics, MCSG; HET: MSE; 1.40A {Pseudomonas aeruginosa
          PAO1} (A:1-75)
          Length = 75

 Score = 23.9 bits (52), Expect = 7.2
 Identities = 3/11 (27%), Positives = 7/11 (63%)

Query: 49 GDYMSKITPYL 59
          G   +++ P+L
Sbjct: 1  GHXSARVRPFL 11


>1u69_A Hypothetical protein; structural genomics, MSCG, protein
          structure initiative (PSI), midwest center for
          structural genomics, MCSG; 1.60A {Pseudomonas
          aeruginosa PAO1} (A:1-73)
          Length = 73

 Score = 23.9 bits (52), Expect = 8.9
 Identities = 5/11 (45%), Positives = 5/11 (45%)

Query: 49 GDYMSKITPYL 59
          G   SK T  L
Sbjct: 1  GHXNSKNTICL 11


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 749,665
Number of extensions: 28042
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 12
Length of query: 110
Length of database: 4,956,049
Length adjustment: 65
Effective length of query: 45
Effective length of database: 2,758,724
Effective search space: 124142580
Effective search space used: 124142580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)