BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780514|ref|YP_003064927.1| type II restriction
endonuclease [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780514|ref|YP_003064927.1| type II restriction endonuclease [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 110

 Score =  224 bits (572), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY 60
           MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY
Sbjct: 1   MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY 60

Query: 61  EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM 110
           EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM
Sbjct: 61  EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM 110


>gi|254780611|ref|YP_003065024.1| RNA polymerase factor sigma-32 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 302

 Score = 22.7 bits (47), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 1   MQFNEIILKNISNNYEVPKMLITELSTELF 30
           +Q N + L+N+S+ +EV +  + ++    F
Sbjct: 248 LQENPVTLENLSSEFEVSRERVRQIEARAF 277


>gi|254781019|ref|YP_003065432.1| hydroxymethylglutaryl-coenzyme A synthase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 20.4 bits (41), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 49  GDYMSKITPYLYEWVLSNTQSRRSRDGQEFEYIIY 83
           G Y +KI     E V  + Q  +  D  +F+Y  Y
Sbjct: 198 GKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCY 232


>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 837

 Score = 20.4 bits (41), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 1   MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY 60
           M+  + + + I  N E+   LIT + T+  ++          ++T  +GD+     P +Y
Sbjct: 281 MRIAQKLYEGIDVNGEI-VGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIY 339

Query: 61  EWVLSNTQSRRSRDGQE 77
                   S +S++ QE
Sbjct: 340 --------SSKSKNAQE 348


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.132    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,067
Number of Sequences: 1233
Number of extensions: 2473
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 110
length of database: 328,796
effective HSP length: 63
effective length of query: 47
effective length of database: 251,117
effective search space: 11802499
effective search space used: 11802499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 32 (16.9 bits)