BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780515|ref|YP_003064928.1| hypothetical protein
CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62]
(42 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040192|gb|ACT56988.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 42
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/42 (100%), Positives = 42/42 (100%)
Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE
Sbjct: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
>gi|319407457|emb|CBI81107.1| putative type II restriction endonuclease [Bartonella sp. 1-1C]
Length = 302
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 2 PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKE 37
P IHLLTVDS+I+ NK E+++KHNI+LVVLD +KK+
Sbjct: 237 PNIHLLTVDSDISVNKIEQMNKHNIVLVVLDTIKKQ 272
>gi|261400949|ref|ZP_05987074.1| type II restriction enzyme SsoII [Neisseria lactamica ATCC 23970]
gi|269209192|gb|EEZ75647.1| type II restriction enzyme SsoII [Neisseria lactamica ATCC 23970]
Length = 132
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
+P I+LLTVD +I+ENK +++ HNI+LVV +KK+ HLK+
Sbjct: 67 VPNIYLLTVDDDISENKVIQMNNHNIVLVVPQNIKKQPHLKD 108
>gi|313667523|ref|YP_004047807.1| restriction endonuclease [Neisseria lactamica ST-640]
gi|309378246|emb|CBX23131.1| putative Type II restriction endonuclease R.NlaX [Neisseria
lactamica Y92-1009]
gi|313004985|emb|CBN86413.1| putative restriction endonuclease [Neisseria lactamica 020-06]
Length = 132
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
+P I+LLTVD +I+ENK +++ HNI+ VV +K + HLK+
Sbjct: 67 VPNIYLLTVDDDISENKVIQMNNHNIVPVVPQSIKNQPHLKD 108
>gi|150026186|ref|YP_001297012.1| type II restriction endonuclease [Flavobacterium psychrophilum
JIP02/86]
gi|149772727|emb|CAL44210.1| Probable type II restriction endonuclease [Flavobacterium
psychrophilum JIP02/86]
Length = 298
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLK 41
+P IHLLT D I ++KA+ + HNII+V + V LK
Sbjct: 231 IPEIHLLTADESIPKSKAQEMANHNIIVVTYEWVANSVALK 271
Searching..................................................done
Results from round 2
>gi|261400949|ref|ZP_05987074.1| type II restriction enzyme SsoII [Neisseria lactamica ATCC 23970]
gi|269209192|gb|EEZ75647.1| type II restriction enzyme SsoII [Neisseria lactamica ATCC 23970]
Length = 132
Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
+P I+LLTVD +I+ENK +++ HNI+LVV +KK+ HLK+
Sbjct: 67 VPNIYLLTVDDDISENKVIQMNNHNIVLVVPQNIKKQPHLKD 108
>gi|313667523|ref|YP_004047807.1| restriction endonuclease [Neisseria lactamica ST-640]
gi|309378246|emb|CBX23131.1| putative Type II restriction endonuclease R.NlaX [Neisseria
lactamica Y92-1009]
gi|313004985|emb|CBN86413.1| putative restriction endonuclease [Neisseria lactamica 020-06]
Length = 132
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
+P I+LLTVD +I+ENK +++ HNI+ VV +K + HLK+
Sbjct: 67 VPNIYLLTVDDDISENKVIQMNNHNIVPVVPQSIKNQPHLKD 108
>gi|319407457|emb|CBI81107.1| putative type II restriction endonuclease [Bartonella sp. 1-1C]
Length = 302
Score = 60.7 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 2 PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKE 37
P IHLLTVDS+I+ NK E+++KHNI+LVVLD +KK+
Sbjct: 237 PNIHLLTVDSDISVNKIEQMNKHNIVLVVLDTIKKQ 272
>gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040192|gb|ACT56988.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 42
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/42 (100%), Positives = 42/42 (100%)
Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE
Sbjct: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
>gi|150026186|ref|YP_001297012.1| type II restriction endonuclease [Flavobacterium psychrophilum
JIP02/86]
gi|149772727|emb|CAL44210.1| Probable type II restriction endonuclease [Flavobacterium
psychrophilum JIP02/86]
Length = 298
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLK 41
+P IHLLT D I ++KA+ + HNII+V + V LK
Sbjct: 231 IPEIHLLTADESIPKSKAQEMANHNIIVVTYEWVANSVALK 271
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.319 0.144 0.379
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 726,049,633
Number of Sequences: 14124377
Number of extensions: 16624999
Number of successful extensions: 32513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32503
Number of HSP's gapped (non-prelim): 10
length of query: 42
length of database: 4,842,793,630
effective HSP length: 16
effective length of query: 26
effective length of database: 4,616,803,598
effective search space: 120036893548
effective search space used: 120036893548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.1 bits)
S2: 76 (33.8 bits)