RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780515|ref|YP_003064928.1| hypothetical protein
CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)



>gnl|CDD|149925 pfam09019, EcoRII-C, EcoRII C terminal.  The C-terminal catalytic
           domain of the Restriction Endonuclease EcoRII has a
           restriction endonuclease-like fold with a central
           five-stranded mixed beta-sheet surrounded on both sides
           by alpha-helices. It cleaves DNA specifically at single
           5' CCWGG sites.
          Length = 164

 Score = 26.9 bits (60), Expect = 1.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 2   PTIHLLTVDSEIAENKAERIDKHNIILVV 30
              HL T+   I+EN+   + + N+ LVV
Sbjct: 113 RRKHLFTLQPGISENQTNEMSEANVQLVV 141


>gnl|CDD|177905 PLN02264, PLN02264, lipoxygenase.
          Length = 919

 Score = 25.3 bits (55), Expect = 3.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 7   LTVDSEIAENKAERIDKHNIILVVLDKV 34
           L+V   + EN+   +D H+I L  LD++
Sbjct: 474 LSVQQALEENRLFMVDYHDIYLPFLDRI 501


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 640,789
Number of extensions: 22662
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 10
Length of query: 42
Length of database: 5,994,473
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,648,745
Effective search space: 146867370
Effective search space used: 146867370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (22.9 bits)