RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62] (42 letters) >1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} (A:284-404) Length = 121 Score = 34.4 bits (79), Expect = 0.006 Identities = 7/40 (17%), Positives = 17/40 (42%) Query: 2 PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLK 41 +HL T+ ++ + + + + LVV + K+ Sbjct: 59 HQVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEA 98 >2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction endonuclease, nucleotide flipping, base extrusion, hydrolase/DNA complex; HET: DNA; 1.70A {Enterobacter cloacae} PDB: 2fqz_A* (A:175-264) Length = 90 Score = 32.1 bits (73), Expect = 0.024 Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 2 PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKH 39 ++L T+D +E + + N+++V + K K+ Sbjct: 28 REMYLATLDDSFSEETINILYEANVVVVTTVENKNFKY 65 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.315 0.133 0.350 Gapped Lambda K H 0.267 0.0620 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 284,783 Number of extensions: 7009 Number of successful extensions: 18 Number of sequences better than 10.0: 1 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 2 Length of query: 42 Length of database: 4,956,049 Length adjustment: 14 Effective length of query: 28 Effective length of database: 4,482,779 Effective search space: 125517812 Effective search space used: 125517812 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.3 bits)