RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780515|ref|YP_003064928.1| hypothetical protein
CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)



>1na6_A Ecorii, restriction endonuclease ecorii; site-specific
          restriction, mutation, replication, hydrolase; 2.10A
          {Escherichia coli} (A:284-404)
          Length = 121

 Score = 34.4 bits (79), Expect = 0.006
 Identities = 7/40 (17%), Positives = 17/40 (42%)

Query: 2  PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLK 41
            +HL T+   ++  +   + +  + LVV   + K+    
Sbjct: 59 HQVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEA 98


>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction
          endonuclease, nucleotide flipping, base extrusion,
          hydrolase/DNA complex; HET: DNA; 1.70A {Enterobacter
          cloacae} PDB: 2fqz_A* (A:175-264)
          Length = 90

 Score = 32.1 bits (73), Expect = 0.024
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 2  PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKH 39
            ++L T+D   +E     + + N+++V   + K  K+
Sbjct: 28 REMYLATLDDSFSEETINILYEANVVVVTTVENKNFKY 65


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 284,783
Number of extensions: 7009
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 42
Length of database: 4,956,049
Length adjustment: 14
Effective length of query: 28
Effective length of database: 4,482,779
Effective search space: 125517812
Effective search space used: 125517812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)