BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62] (42 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62] Length = 42 Score = 81.3 bits (199), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 42/42 (100%), Positives = 42/42 (100%) Query: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE Sbjct: 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42 >gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 20.4 bits (41), Expect = 6.4, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 10 DSEIAENKAERIDKHNIILV 29 D EIA +KA + NIILV Sbjct: 86 DGEIAVHKALQSGARNIILV 105 >gi|254780175|ref|YP_003064588.1| hypothetical protein CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62] Length = 38 Score = 20.0 bits (40), Expect = 8.3, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Query: 11 SEIAENKAERIDKHNIILVVLDKVKKEK 38 ++I EN ++ D H +L +DKV EK Sbjct: 7 AQIKEN--QQRDNHKALLASIDKVMSEK 32 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.133 0.350 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,246 Number of Sequences: 1233 Number of extensions: 633 Number of successful extensions: 6 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6 length of query: 42 length of database: 328,796 effective HSP length: 16 effective length of query: 26 effective length of database: 309,068 effective search space: 8035768 effective search space used: 8035768 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (20.6 bits) S2: 31 (16.5 bits)