HHsearch alignment for GI: 254780516 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=97.04 E-value=0.0027 Score=36.95 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=51.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 26964107947889999872220895699998069555112220012332------321158975365788719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
T Consensus 89 ~~ilDlgtGSG~I~i~la~~~~--~-~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvsNPP 163 (251)
T TIGR03534 89 LKVLDLGTGSGAIALALAKERP--D-ARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPL--PGGKFDLIVSNPP 163 (251)
T ss_pred CEEEEECCCHHHHHHHHHHHCC--C-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCC--CCCCCCEEEECCC
T ss_conf 8699955671699999999679--9-789999898799999999999809982686513143215--6898668997899
Q ss_pred CCCCC
Q ss_conf 97543
Q gi|254780516|r 76 CQPFS 80 (83)
Q Consensus 76 Cq~fS 80 (83)
T Consensus 164 YI~~~ 168 (251)
T TIGR03534 164 YIPEA 168 (251)
T ss_pred CCCHH
T ss_conf 88745