Query gi|254780516|ref|YP_003064929.1| type II modification methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 83
No_of_seqs 109 out of 2682
Neff 7.2
Searched_HMMs 39220
Date Sun May 29 22:55:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780516.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00675 dcm DNA-cytosine met 100.0 6.8E-36 1.7E-40 200.6 4.9 80 4-83 1-92 (425)
2 pfam00145 DNA_methylase C-5 cy 100.0 4.9E-32 1.3E-36 181.2 6.6 77 2-83 1-77 (319)
3 cd00315 Cyt_C5_DNA_methylase C 100.0 7E-31 1.8E-35 175.5 6.8 78 2-83 1-79 (275)
4 COG0270 Dcm Site-specific DNA 100.0 1E-30 2.7E-35 174.6 5.9 79 1-83 3-84 (328)
5 PRK10458 DNA cytosine methylas 100.0 2.3E-30 5.8E-35 172.9 6.5 78 2-83 92-189 (470)
6 KOG0919 consensus 99.6 2E-16 5.1E-21 102.9 3.6 80 2-83 4-86 (338)
7 pfam02475 Met_10 Met-10+ like- 98.5 4.5E-07 1.1E-11 56.0 6.5 69 3-76 103-178 (199)
8 COG2520 Predicted methyltransf 98.4 2.5E-07 6.5E-12 57.2 3.5 69 3-76 191-266 (341)
9 PRK10909 rsmD 16S rRNA m(2)G96 98.1 1.8E-06 4.5E-11 52.9 3.5 71 2-76 54-130 (198)
10 pfam09445 Methyltransf_15 RNA 98.1 1.3E-05 3.2E-10 48.7 7.1 69 3-76 3-81 (165)
11 pfam03602 Cons_hypoth95 Conser 98.0 2.2E-05 5.6E-10 47.4 6.3 72 2-77 45-124 (181)
12 PRK03522 rumB 23S rRNA methylu 97.8 2.8E-05 7.2E-10 46.9 3.8 72 3-79 236-313 (375)
13 PHA02056 putative methyltransf 97.7 8.3E-05 2.1E-09 44.5 5.3 70 3-77 67-137 (279)
14 COG0742 N6-adenine-specific me 97.6 0.00022 5.6E-09 42.4 6.2 71 3-77 46-125 (187)
15 COG2890 HemK Methylase of poly 97.5 0.00045 1.2E-08 40.9 6.7 74 3-80 113-190 (280)
16 KOG1227 consensus 97.4 4.6E-05 1.2E-09 45.9 0.7 55 4-62 198-260 (351)
17 COG2263 Predicted RNA methylas 97.3 0.00053 1.3E-08 40.5 5.4 66 3-76 48-118 (198)
18 PRK13168 rumA 23S rRNA 5-methy 97.3 0.00025 6.5E-09 42.1 3.3 71 3-78 297-376 (440)
19 COG2265 TrmA SAM-dependent met 97.2 0.0003 7.7E-09 41.7 3.3 69 3-76 296-372 (432)
20 TIGR00095 TIGR00095 putative m 97.2 0.00055 1.4E-08 40.4 4.5 70 3-76 58-142 (210)
21 TIGR03533 L3_gln_methyl protei 97.2 0.0015 3.8E-08 38.3 6.6 71 2-79 123-202 (284)
22 PRK11805 N5-glutamine S-adenos 97.1 0.0019 4.9E-08 37.7 6.5 72 2-78 135-213 (307)
23 PRK09328 N5-glutamine S-adenos 97.1 0.0024 6.2E-08 37.2 6.7 74 2-79 111-189 (277)
24 TIGR03534 RF_mod_HemK protein- 97.0 0.0027 6.9E-08 37.0 6.8 74 2-80 89-168 (251)
25 COG4123 Predicted O-methyltran 97.0 0.00093 2.4E-08 39.3 4.0 71 3-76 47-125 (248)
26 cd02440 AdoMet_MTases S-adenos 97.0 0.0013 3.4E-08 38.5 4.6 72 3-78 1-78 (107)
27 PRK05031 tRNA (uracil-5-)-meth 96.8 0.0018 4.5E-08 37.9 4.0 72 3-79 210-302 (363)
28 PRK01544 bifunctional N5-gluta 96.7 0.0071 1.8E-07 34.8 6.5 76 2-80 137-217 (503)
29 pfam05958 tRNA_U5-meth_tr tRNA 96.6 0.0028 7.1E-08 36.9 4.2 41 3-48 200-240 (353)
30 pfam05175 MTS Methyltransferas 96.6 0.0072 1.8E-07 34.8 6.3 67 3-76 34-108 (170)
31 PRK11933 yebU rRNA (cytosine-C 96.6 0.0076 1.9E-07 34.7 6.2 76 3-80 116-197 (471)
32 pfam01189 Nol1_Nop2_Fmu NOL1/N 96.4 0.0084 2.1E-07 34.5 5.6 77 2-80 86-169 (277)
33 COG1092 Predicted SAM-dependen 96.3 0.0024 6.1E-08 37.2 2.2 70 3-76 220-300 (393)
34 pfam01170 UPF0020 Putative RNA 96.3 0.0063 1.6E-07 35.1 4.3 69 3-75 31-106 (171)
35 pfam10672 Methyltrans_SAM S-ad 96.3 0.015 3.8E-07 33.2 6.1 71 2-76 125-205 (286)
36 PRK10901 16S rRNA methyltransf 96.2 0.021 5.2E-07 32.5 6.6 76 2-80 247-328 (428)
37 COG0144 Sun tRNA and rRNA cyto 96.0 0.023 5.9E-07 32.3 6.0 77 3-80 159-243 (355)
38 KOG3420 consensus 96.0 0.007 1.8E-07 34.9 3.4 69 2-75 50-123 (185)
39 TIGR00479 rumA 23S rRNA (uraci 95.6 0.016 4.1E-07 33.1 4.1 68 3-75 297-373 (434)
40 PRK09329 N5-glutamine S-adenos 95.6 0.036 9.1E-07 31.3 5.8 72 3-80 112-188 (285)
41 pfam06325 PrmA Ribosomal prote 95.6 0.039 9.8E-07 31.2 5.8 67 2-72 162-230 (294)
42 PRK00517 prmA ribosomal protei 95.5 0.058 1.5E-06 30.3 6.4 66 2-72 164-233 (298)
43 pfam02005 TRM N2,N2-dimethylgu 95.1 0.041 1E-06 31.0 4.8 45 2-48 51-95 (375)
44 COG3897 Predicted methyltransf 94.7 0.036 9.1E-07 31.3 3.6 73 2-80 81-156 (218)
45 KOG2904 consensus 94.6 0.15 3.7E-06 28.3 6.4 71 3-76 151-232 (328)
46 COG2521 Predicted archaeal met 94.5 0.057 1.4E-06 30.3 4.1 75 2-83 136-220 (287)
47 TIGR00406 prmA ribosomal prote 94.1 0.059 1.5E-06 30.2 3.6 66 3-72 199-272 (330)
48 pfam05185 PRMT5 PRMT5 arginine 94.0 0.13 3.3E-06 28.5 5.2 70 8-80 194-276 (447)
49 COG0030 KsgA Dimethyladenosine 93.8 0.16 4.1E-06 28.1 5.3 69 3-76 33-105 (259)
50 COG2226 UbiE Methylase involve 92.8 0.31 7.8E-06 26.6 5.4 70 2-75 53-128 (238)
51 PRK09489 rsmC 16S ribosomal RN 92.8 0.46 1.2E-05 25.8 6.3 66 3-75 199-270 (342)
52 PRK04338 N(2),N(2)-dimethylgua 92.8 0.18 4.5E-06 27.9 4.2 46 2-50 53-98 (376)
53 TIGR02085 meth_trns_rumB 23S r 92.5 0.11 2.7E-06 29.0 2.8 42 4-45 241-284 (386)
54 TIGR02143 trmA_only tRNA (urac 92.0 0.036 9.1E-07 31.3 -0.1 43 4-51 207-249 (361)
55 COG2264 PrmA Ribosomal protein 92.0 0.38 9.8E-06 26.2 5.1 45 2-50 164-208 (300)
56 PRK05134 3-demethylubiquinone- 91.0 0.45 1.1E-05 25.8 4.6 66 2-72 50-120 (233)
57 pfam08241 Methyltransf_11 Meth 90.9 0.52 1.3E-05 25.5 4.9 65 5-74 1-68 (95)
58 smart00650 rADc Ribosomal RNA 90.9 0.5 1.3E-05 25.6 4.8 68 3-76 16-87 (169)
59 pfam00398 RrnaAD Ribosomal RNA 90.8 0.62 1.6E-05 25.1 5.2 67 3-75 33-103 (258)
60 COG1041 Predicted DNA modifica 90.7 0.44 1.1E-05 25.9 4.3 66 3-76 200-274 (347)
61 COG2813 RsmC 16S RNA G1207 met 90.7 0.66 1.7E-05 25.0 5.3 71 3-76 161-234 (300)
62 PTZ00338 dimethyladenosine tra 90.5 0.93 2.4E-05 24.2 5.9 67 3-77 41-114 (296)
63 KOG2730 consensus 90.2 0.093 2.4E-06 29.3 0.5 69 3-76 97-175 (263)
64 pfam01209 Ubie_methyltran ubiE 89.9 0.44 1.1E-05 25.9 3.8 70 2-74 49-124 (233)
65 COG1867 TRM1 N2,N2-dimethylgua 88.9 0.55 1.4E-05 25.4 3.7 46 2-50 54-99 (380)
66 KOG1122 consensus 88.9 0.75 1.9E-05 24.7 4.4 75 2-78 243-324 (460)
67 PTZ00098 phosphoethanolamine N 88.8 1.4 3.5E-05 23.3 5.7 42 2-47 54-95 (263)
68 PRK06202 hypothetical protein; 88.8 1.1 2.7E-05 23.9 5.1 77 2-79 63-143 (233)
69 TIGR00308 TRM1 N2,N2-dimethylg 88.7 0.13 3.3E-06 28.5 0.3 59 2-62 96-157 (462)
70 KOG2015 consensus 87.6 0.41 1E-05 26.0 2.4 67 8-74 45-137 (422)
71 pfam02086 MethyltransfD12 D12 87.3 0.8 2E-05 24.6 3.7 38 3-45 23-60 (254)
72 TIGR00446 nop2p NOL1/NOP2/sun 87.2 1.4 3.4E-05 23.4 4.8 76 2-79 79-163 (284)
73 TIGR01934 MenG_MenH_UbiE ubiqu 86.9 1.5 3.8E-05 23.2 4.9 71 3-74 46-132 (242)
74 KOG2361 consensus 86.7 0.78 2E-05 24.6 3.4 69 3-72 74-150 (264)
75 PRK00216 ubiE ubiquinone/menaq 86.7 2.1 5.4E-05 22.4 5.6 72 2-76 53-131 (239)
76 PRK10258 biotin biosynthesis p 86.2 1.5 3.8E-05 23.2 4.6 69 3-77 45-114 (251)
77 PRK00274 ksgA dimethyladenosin 86.0 1.5 3.8E-05 23.2 4.5 68 3-76 42-112 (267)
78 KOG2198 consensus 85.1 2.9 7.3E-05 21.8 5.6 76 3-79 158-249 (375)
79 TIGR00755 ksgA dimethyladenosi 84.8 3.2 8.2E-05 21.5 6.0 68 3-75 32-111 (277)
80 PRK01683 trans-aconitate 2-met 83.7 3.6 9.2E-05 21.3 5.9 67 2-73 33-100 (252)
81 COG2227 UbiG 2-polyprenyl-3-me 83.0 1.7 4.4E-05 22.9 3.8 47 2-53 61-107 (243)
82 pfam01728 FtsJ FtsJ-like methy 82.8 1.2 3E-05 23.7 2.8 70 2-80 23-101 (176)
83 COG3963 Phospholipid N-methylt 82.6 2.6 6.7E-05 22.0 4.6 78 2-81 50-132 (194)
84 PRK05785 hypothetical protein; 82.4 2.3 5.8E-05 22.3 4.2 65 2-75 53-117 (225)
85 PRK00377 cbiT cobalt-precorrin 82.0 3.6 9.2E-05 21.3 5.1 69 3-74 43-120 (198)
86 smart00828 PKS_MT Methyltransf 81.8 3.1 7.9E-05 21.6 4.7 65 3-72 2-73 (224)
87 TIGR03587 Pse_Me-ase pseudamin 81.5 4.5 0.00011 20.8 5.7 64 3-71 46-110 (204)
88 TIGR02072 BioC biotin biosynth 80.9 0.73 1.9E-05 24.7 1.2 68 2-73 38-117 (272)
89 PRK08317 hypothetical protein; 80.0 5 0.00013 20.5 6.0 69 2-73 21-94 (241)
90 PRK00258 aroE shikimate 5-dehy 79.5 3.1 7.9E-05 21.6 4.0 67 8-75 127-193 (275)
91 PRK11036 putative metallothion 78.0 2.8 7.1E-05 21.8 3.4 66 2-72 46-118 (256)
92 PRK07580 Mg-protoporphyrin IX 77.6 5.2 0.00013 20.5 4.7 43 2-49 65-107 (230)
93 PRK11207 tellurite resistance 77.1 6.3 0.00016 20.1 5.9 63 3-72 33-101 (198)
94 pfam01564 Spermine_synth Sperm 76.3 1.4 3.7E-05 23.3 1.6 61 15-75 87-157 (240)
95 cd01065 NAD_bind_Shikimate_DH 75.8 6.6 0.00017 19.9 4.9 69 7-76 23-91 (155)
96 pfam03848 TehB Tellurite resis 74.5 7.4 0.00019 19.7 6.3 54 3-61 33-91 (192)
97 pfam02384 N6_Mtase N-6 DNA Met 74.4 6.8 0.00017 19.9 4.6 73 3-75 49-134 (312)
98 KOG2078 consensus 73.2 1.5 3.9E-05 23.1 1.1 43 4-51 253-295 (495)
99 PRK11524 putative methyltransf 71.8 6.2 0.00016 20.1 3.9 45 3-52 211-255 (284)
100 pfam01118 Semialdhyde_dh Semia 71.5 5.7 0.00015 20.3 3.7 66 9-75 8-75 (121)
101 TIGR01829 AcAcCoA_reduct aceto 70.8 4.3 0.00011 20.9 2.9 63 9-71 7-84 (244)
102 PRK03612 spermidine synthase; 70.6 2.8 7.1E-05 21.8 1.9 66 12-77 302-380 (516)
103 pfam01555 N6_N4_Mtase DNA meth 70.5 7.4 0.00019 19.7 4.1 34 4-42 185-218 (221)
104 PRK08213 gluconate 5-dehydroge 70.4 2.9 7.4E-05 21.7 2.0 71 1-72 1-95 (259)
105 cd01488 Uba3_RUB Ubiquitin act 69.9 6.2 0.00016 20.1 3.6 68 7-74 3-96 (291)
106 TIGR00571 dam DNA adenine meth 69.8 4 0.0001 21.1 2.6 44 2-47 32-75 (327)
107 TIGR02021 BchM-ChlM magnesium 69.7 9.8 0.00025 19.1 4.9 63 2-72 56-126 (224)
108 PRK07402 precorrin-6B methylas 69.2 10 0.00026 19.0 4.8 67 3-73 43-117 (196)
109 PRK00536 speE spermidine synth 69.0 2.6 6.6E-05 22.0 1.5 59 12-72 80-145 (262)
110 PRK11873 arsM arsenite S-adeno 67.8 11 0.00028 18.9 5.6 68 2-72 75-148 (258)
111 TIGR00536 hemK_fam methyltrans 67.7 6.8 0.00017 19.9 3.4 76 2-78 128-211 (311)
112 COG0116 Predicted N6-adenine-s 66.6 7.9 0.0002 19.6 3.5 47 29-76 256-309 (381)
113 PRK00421 murC UDP-N-acetylmura 64.8 11 0.00028 18.8 4.0 62 7-74 12-75 (459)
114 PRK00811 spermidine synthase; 64.0 4 0.0001 21.1 1.6 35 15-49 90-124 (283)
115 KOG2187 consensus 64.0 4.4 0.00011 20.8 1.9 39 4-47 387-425 (534)
116 pfam08242 Methyltransf_12 Meth 63.9 13 0.00033 18.5 4.4 68 5-75 1-74 (98)
117 PRK12767 carbamoyl phosphate s 61.8 9.5 0.00024 19.2 3.2 42 1-45 1-43 (325)
118 KOG0822 consensus 59.9 10 0.00026 19.0 3.1 70 9-80 376-457 (649)
119 COG2242 CobL Precorrin-6B meth 59.4 16 0.0004 18.0 5.5 67 4-74 38-111 (187)
120 KOG1540 consensus 59.3 16 0.00041 18.0 6.3 46 2-47 102-150 (296)
121 PRK13699 putative methylase; P 58.5 12 0.0003 18.7 3.2 42 3-49 166-207 (227)
122 pfam03291 Pox_MCEL mRNA cappin 58.3 15 0.00038 18.2 3.7 37 2-42 65-101 (327)
123 PRK06057 short chain dehydroge 57.9 12 0.00032 18.6 3.3 62 9-71 14-84 (255)
124 KOG2360 consensus 56.7 10 0.00027 18.9 2.7 74 3-78 216-296 (413)
125 PRK12549 shikimate 5-dehydroge 56.1 18 0.00046 17.7 4.8 68 8-75 132-201 (284)
126 PRK12335 tellurite resistance 55.4 19 0.00048 17.7 5.4 40 3-47 125-164 (289)
127 KOG1253 consensus 54.1 2.1 5.4E-05 22.4 -1.2 46 2-49 111-156 (525)
128 PRK08643 acetoin reductase; Va 54.0 20 0.0005 17.6 3.8 70 1-71 1-84 (256)
129 COG2519 GCD14 tRNA(1-methylade 53.9 20 0.00051 17.5 5.6 70 2-75 96-172 (256)
130 pfam10294 Methyltransf_16 Puta 53.8 20 0.00051 17.5 5.8 67 3-73 47-124 (171)
131 KOG0820 consensus 52.8 21 0.00053 17.5 6.5 67 4-78 62-135 (315)
132 TIGR01983 UbiG ubiquinone bios 51.8 20 0.00051 17.5 3.5 67 2-72 86-165 (275)
133 pfam07021 MetW Methionine bios 51.4 22 0.00056 17.3 3.9 65 3-73 16-82 (193)
134 pfam01488 Shikimate_DH Shikima 51.4 22 0.00056 17.3 5.1 71 7-78 16-87 (134)
135 pfam01408 GFO_IDH_MocA Oxidore 50.8 19 0.00049 17.6 3.3 65 8-75 5-72 (120)
136 TIGR02469 CbiT precorrin-6Y C5 48.5 19 0.00049 17.6 3.0 70 3-74 23-108 (135)
137 PRK11088 rrmA 23S rRNA methylt 47.7 25 0.00065 17.0 5.8 68 3-71 88-156 (272)
138 COG4106 Tam Trans-aconitate me 47.3 24 0.00061 17.1 3.3 64 3-71 33-97 (257)
139 PRK06124 gluconate 5-dehydroge 46.9 17 0.00044 17.8 2.6 62 10-72 22-97 (259)
140 PRK06841 short chain dehydroge 46.7 25 0.00063 17.1 3.3 62 9-71 22-94 (255)
141 pfam03807 F420_oxidored NADP o 46.3 17 0.00044 17.9 2.5 62 8-73 4-65 (93)
142 COG0421 SpeE Spermidine syntha 45.3 14 0.00035 18.3 1.9 66 4-72 80-155 (282)
143 PRK00094 gpsA NAD(P)H-dependen 44.2 29 0.00074 16.7 5.7 77 1-80 1-85 (325)
144 TIGR00067 glut_race glutamate 44.1 25 0.00064 17.0 3.0 27 9-36 8-35 (262)
145 PRK06200 2,3-dihydroxy-2,3-dih 43.9 26 0.00067 16.9 3.1 63 9-72 13-86 (263)
146 PRK01581 speE spermidine synth 42.8 21 0.00054 17.4 2.5 67 12-78 148-227 (363)
147 pfam02254 TrkA_N TrkA-N domain 41.6 32 0.00081 16.5 4.0 65 8-75 3-70 (115)
148 TIGR03325 BphB_TodD cis-2,3-di 40.6 33 0.00085 16.4 3.3 62 9-71 12-84 (262)
149 PRK12742 oxidoreductase; Provi 39.0 35 0.0009 16.3 3.2 64 9-72 13-81 (237)
150 PRK07067 sorbitol dehydrogenas 37.9 37 0.00094 16.2 3.4 63 9-72 12-85 (256)
151 PRK12935 acetoacetyl-CoA reduc 37.9 30 0.00076 16.7 2.6 64 9-72 13-90 (247)
152 COG0169 AroE Shikimate 5-dehyd 37.3 38 0.00096 16.1 5.4 42 8-49 131-172 (283)
153 PRK06463 fabG 3-ketoacyl-(acyl 37.1 38 0.00097 16.1 3.1 63 9-72 14-85 (254)
154 PRK08265 short chain dehydroge 36.0 40 0.001 16.0 3.2 63 9-72 13-86 (261)
155 KOG1270 consensus 35.6 36 0.00093 16.2 2.8 42 2-48 91-132 (282)
156 TIGR00289 TIGR00289 conserved 34.5 38 0.00097 16.1 2.7 50 2-52 1-50 (227)
157 PRK10904 DNA adenine methylase 33.7 22 0.00055 17.4 1.4 35 3-44 30-64 (271)
158 COG1712 Predicted dinucleotide 33.6 44 0.0011 15.8 3.7 43 9-51 6-50 (255)
159 PRK05872 short chain dehydroge 33.4 44 0.0011 15.8 3.2 61 10-71 17-88 (296)
160 PRK08936 glucose-1-dehydrogena 33.4 37 0.00094 16.2 2.5 64 9-72 14-91 (261)
161 KOG2671 consensus 33.3 18 0.00045 17.8 0.9 68 4-76 212-294 (421)
162 PRK11783 rlmL 23S rRNA m(2)G24 33.0 32 0.00083 16.5 2.2 19 30-48 263-281 (716)
163 TIGR01963 PHB_DH 3-hydroxybuty 32.9 23 0.00059 17.2 1.4 59 9-71 11-85 (258)
164 PRK06476 pyrroline-5-carboxyla 32.8 32 0.00082 16.5 2.1 45 8-52 5-51 (255)
165 TIGR01771 L-LDH-NAD L-lactate 32.4 46 0.0012 15.7 4.8 65 13-78 8-79 (302)
166 PRK09496 trkA potassium transp 32.1 46 0.0012 15.7 3.8 46 26-72 254-303 (455)
167 COG4221 Short-chain alcohol de 32.1 38 0.00096 16.2 2.4 58 13-71 17-86 (246)
168 TIGR03570 NeuD_NnaD sugar O-ac 31.9 47 0.0012 15.7 3.7 33 9-41 5-37 (201)
169 COG4076 Predicted RNA methylas 31.7 47 0.0012 15.7 3.7 53 4-61 36-94 (252)
170 PRK12743 acetoin dehydrogenase 30.6 50 0.0013 15.6 3.6 71 1-71 1-85 (253)
171 TIGR00507 aroE shikimate 5-deh 30.5 50 0.0013 15.5 5.4 67 8-75 126-199 (286)
172 PRK05876 short chain dehydroge 30.4 44 0.0011 15.8 2.5 62 9-71 13-88 (275)
173 PRK12829 short chain dehydroge 29.1 53 0.0013 15.4 3.3 62 9-71 18-91 (264)
174 PRK08277 D-mannonate oxidoredu 29.1 52 0.0013 15.4 2.7 63 9-72 17-93 (278)
175 TIGR02407 ectoine_ectB diamino 28.3 12 0.0003 18.7 -0.8 39 3-43 36-83 (413)
176 PRK06346 consensus 27.7 56 0.0014 15.3 2.9 62 9-71 12-87 (251)
177 PRK06500 short chain dehydroge 27.4 57 0.0014 15.3 3.4 63 9-72 13-86 (249)
178 PRK08642 fabG 3-ketoacyl-(acyl 27.4 57 0.0014 15.3 2.8 63 10-72 14-88 (254)
179 PRK06138 short chain dehydroge 27.0 58 0.0015 15.2 3.0 61 10-71 13-86 (252)
180 PRK07680 late competence prote 26.1 60 0.0015 15.1 2.7 47 7-53 4-53 (273)
181 PRK09134 short chain dehydroge 26.0 61 0.0015 15.1 2.6 63 10-72 17-93 (256)
182 PRK08287 cobalt-precorrin-6Y C 25.8 61 0.0016 15.1 4.7 68 3-74 33-105 (186)
183 cd01492 Aos1_SUMO Ubiquitin ac 24.7 64 0.0016 15.0 3.7 68 7-74 25-118 (197)
184 COG3392 Adenine-specific DNA m 24.4 37 0.00094 16.2 1.2 40 4-48 31-70 (330)
185 KOG3191 consensus 24.2 66 0.0017 14.9 5.3 73 4-80 47-124 (209)
186 PRK07060 short chain dehydroge 24.0 66 0.0017 14.9 3.4 62 9-71 16-82 (245)
187 PRK07074 short chain dehydroge 23.8 67 0.0017 14.9 3.1 63 9-72 9-82 (256)
188 pfam11599 AviRa RRNA methyltra 23.7 31 0.00078 16.6 0.7 42 3-47 54-97 (249)
189 pfam05401 NodS Nodulation prot 23.7 67 0.0017 14.9 2.9 64 3-73 46-113 (201)
190 PRK09135 pteridine reductase; 23.1 69 0.0018 14.8 2.8 63 9-71 13-90 (249)
191 TIGR00477 tehB tellurite resis 22.7 70 0.0018 14.8 3.0 38 3-45 76-113 (239)
192 PRK06198 short chain dehydroge 22.7 71 0.0018 14.8 3.9 71 9-79 13-100 (268)
193 TIGR00379 cobB cobyrinic acid 22.3 47 0.0012 15.7 1.4 34 42-75 265-305 (464)
194 PRK06482 short chain dehydroge 22.2 72 0.0018 14.7 4.3 73 1-74 1-86 (276)
195 KOG1499 consensus 22.0 73 0.0019 14.7 4.9 65 3-72 63-133 (346)
196 pfam08704 GCD14 tRNA methyltra 22.0 73 0.0019 14.7 5.5 52 3-56 105-163 (309)
197 PRK08226 short chain dehydroge 21.7 74 0.0019 14.7 3.0 61 10-71 14-87 (263)
198 pfam03446 NAD_binding_2 NAD bi 21.5 75 0.0019 14.6 3.4 42 1-45 1-42 (163)
199 PRK12481 2-deoxy-D-gluconate 3 21.3 76 0.0019 14.6 2.9 63 10-72 16-89 (251)
200 COG0293 FtsJ 23S rRNA methylas 21.2 76 0.0019 14.6 3.6 50 2-60 47-98 (205)
201 PRK06077 fabG 3-ketoacyl-(acyl 21.2 76 0.0019 14.6 2.6 63 10-72 11-87 (249)
202 PRK07326 short chain dehydroge 21.0 77 0.002 14.6 3.3 62 10-72 13-86 (235)
203 PRK08063 enoyl-(acyl carrier p 20.9 77 0.002 14.6 3.3 69 4-72 6-88 (250)
204 pfam01210 NAD_Gly3P_dh_N NAD-d 20.9 77 0.002 14.6 4.6 69 10-79 7-83 (159)
205 PRK08589 short chain dehydroge 20.9 78 0.002 14.6 2.7 61 10-71 14-87 (272)
No 1
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=100.00 E-value=6.8e-36 Score=200.63 Aligned_cols=80 Identities=60% Similarity=1.060 Sum_probs=74.9
Q ss_pred EEEECCCCCHHHHHHHHHHHC--CCCEEEEEEEC--CHHHHHHHHHCCCC--CCCCCEEEEEECCC------CCCCEEEE
Q ss_conf 964107947889999872220--89569999806--95551122200123--32321158975365------78871999
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNH--RNVECFFSSEI--NPYSVKTYQANFPN--TLIFGDIAKIKTQD------IPDHDVLL 71 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~--~~~~~v~a~e~--d~~a~~~y~~n~~~--~~~~~DI~~~~~~~------~~~~D~l~ 71 (83)
++||||||||+++||++++.. +.+++||++|| |++|++||+.||++ ....+||++++.++ +|++|+|+
T Consensus 1 ~idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~~~~~~~~DI~~i~~~~~~~~~~~Pd~D~L~ 80 (425)
T TIGR00675 1 VIDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGNDEKVPFGDITKISPSDLLRHIAIPDFDILL 80 (425)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 94542551357899997410141113788720166877899999976478842067763336601150012488678996
Q ss_pred ECCCCCCCCCCC
Q ss_conf 868997543689
Q gi|254780516|r 72 AGFPCQPFSQAG 83 (83)
Q Consensus 72 gG~PCq~fS~aG 83 (83)
||||||+||+||
T Consensus 81 gGFPCQ~FS~AG 92 (425)
T TIGR00675 81 GGFPCQPFSIAG 92 (425)
T ss_pred CCCCCCHHHHHC
T ss_conf 389971344641
No 2
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=99.97 E-value=4.9e-32 Score=181.25 Aligned_cols=77 Identities=56% Similarity=0.976 Sum_probs=73.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCC
Q ss_conf 26964107947889999872220895699998069555112220012332321158975365788719998689975436
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ 81 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~~~~D~l~gG~PCq~fS~ 81 (83)
||++|||||+||+++||++| |+++++++|+|+.|++||++|||++. ++||++++.++++++|+|+||||||+||+
T Consensus 1 ~~vidlF~G~GG~s~G~~~a----G~~~~~a~e~d~~a~~ty~~N~~~~~-~~Di~~~~~~~~~~~Dvl~ggpPCQ~fS~ 75 (319)
T pfam00145 1 FKFIDLFAGIGGFRLGLEQA----GFECVAANEIDKSAAKTYEANFPKVP-IGDITLIDIKDIPDIDILTGGFPCQDFSI 75 (319)
T ss_pred CCEEEECCCCCHHHHHHHHC----CCEEEEEEECCHHHHHHHHHHCCCCC-CCCCCCCCHHHCCCCCEEEECCCCCCCCC
T ss_conf 95899780707899999987----99299998389999999998779996-17754088747888688986899987240
Q ss_pred CC
Q ss_conf 89
Q gi|254780516|r 82 AG 83 (83)
Q Consensus 82 aG 83 (83)
||
T Consensus 76 ag 77 (319)
T pfam00145 76 AG 77 (319)
T ss_pred CC
T ss_conf 15
No 3
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.97 E-value=7e-31 Score=175.47 Aligned_cols=78 Identities=56% Similarity=0.990 Sum_probs=74.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCC-CCCEEEEECCCCCCCC
Q ss_conf 269641079478899998722208956999980695551122200123323211589753657-8871999868997543
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI-PDHDVLLAGFPCQPFS 80 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~-~~~D~l~gG~PCq~fS 80 (83)
||++|||||+||+++||+++ |+++++++|+|+.|++||++|||+..+++||++++.+++ +++|+|+||||||+||
T Consensus 1 l~v~dLFsG~GG~s~Gl~~a----G~~~~~a~e~d~~a~~t~~~N~~~~~~~~Di~~~~~~~~~~~vDll~ggpPCQ~fS 76 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA----GFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred CCEEEECCCCCHHHHHHHHC----CCEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 95999767807899999986----99899999689999999998879995258864465321378878898689998735
Q ss_pred CCC
Q ss_conf 689
Q gi|254780516|r 81 QAG 83 (83)
Q Consensus 81 ~aG 83 (83)
.||
T Consensus 77 ~ag 79 (275)
T cd00315 77 IAG 79 (275)
T ss_pred CCC
T ss_conf 478
No 4
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1e-30 Score=174.60 Aligned_cols=79 Identities=48% Similarity=0.902 Sum_probs=74.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC-CCCCCCEEEEEECCCCC--CCEEEEECCCCC
Q ss_conf 926964107947889999872220895699998069555112220012-33232115897536578--871999868997
Q gi|254780516|r 1 MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIP--DHDVLLAGFPCQ 77 (83)
Q Consensus 1 ml~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~-~~~~~~DI~~~~~~~~~--~~D~l~gG~PCq 77 (83)
|++++|||||+||+++||+++ ++++++++|||++|++||++||+ ...+.+||+++..+.++ ++|+|+||||||
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a----gf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA----GFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHC----CCEEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHCHHHCCCCCCCEEEECCCCC
T ss_conf 854998658756588999864----9848998746988999999858887420303766052223556763798589972
Q ss_pred CCCCCC
Q ss_conf 543689
Q gi|254780516|r 78 PFSQAG 83 (83)
Q Consensus 78 ~fS~aG 83 (83)
+||+||
T Consensus 79 ~FS~aG 84 (328)
T COG0270 79 DFSIAG 84 (328)
T ss_pred CHHHHC
T ss_conf 133407
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=99.96 E-value=2.3e-30 Score=172.89 Aligned_cols=78 Identities=55% Similarity=0.914 Sum_probs=69.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC----CCCEEEEEEC----------------
Q ss_conf 26964107947889999872220895699998069555112220012332----3211589753----------------
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL----IFGDIAKIKT---------------- 61 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~----~~~DI~~~~~---------------- 61 (83)
+|++||||||||+++||+.+ |-++|+++|||++|++||++||...+ ..+||+++..
T Consensus 92 f~FIDLFAGIGG~r~~~e~~----gg~CVfssE~dk~a~~tY~an~~~~~~~~~~~~di~~i~~~~~~~v~~~~~~~~~~ 167 (470)
T PRK10458 92 FRFIDLFAGIGGIRRGFEAI----GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIR 167 (470)
T ss_pred CEEEEECCCCCHHHHHHHHC----CCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 66763357755677999973----99799985068999999999659986434356861002235566544200000111
Q ss_pred CCCCCCEEEEECCCCCCCCCCC
Q ss_conf 6578871999868997543689
Q gi|254780516|r 62 QDIPDHDVLLAGFPCQPFSQAG 83 (83)
Q Consensus 62 ~~~~~~D~l~gG~PCq~fS~aG 83 (83)
+++|++|+|.+||||||||+||
T Consensus 168 ~~iP~~dil~aGFPCQ~fS~aG 189 (470)
T PRK10458 168 QHIPDHDVLLAGFPCQPFSLAG 189 (470)
T ss_pred CCCCCCCEEECCCCCCHHHHHC
T ss_conf 4699616773178996354543
No 6
>KOG0919 consensus
Probab=99.62 E-value=2e-16 Score=102.87 Aligned_cols=80 Identities=25% Similarity=0.545 Sum_probs=70.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC-CCCCCCEEEEEECCCCC--CCEEEEECCCCCC
Q ss_conf 26964107947889999872220895699998069555112220012-33232115897536578--8719998689975
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIP--DHDVLLAGFPCQP 78 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~-~~~~~~DI~~~~~~~~~--~~D~l~gG~PCq~ 78 (83)
+||++|+||+|||+.+|+.+. +..++|+|.|+++-|.++|++|+. +..-..||..+..+++. ++|++..+|||||
T Consensus 4 LrVlelysg~ggmhyal~~a~--ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd~l~~~m~lMSPpCQP 81 (338)
T KOG0919 4 LRVLELYSGHGGMHYALEDAQ--IPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFDKLQANMLLMSPPCQP 81 (338)
T ss_pred EEHHHHHHCCCHHHHHHHHHC--CCHHHEEEEECCHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHCCCCEEEECCCCCC
T ss_conf 133355543214565676516--864527877334267788841854312201354411286641014555850799984
Q ss_pred CCCCC
Q ss_conf 43689
Q gi|254780516|r 79 FSQAG 83 (83)
Q Consensus 79 fS~aG 83 (83)
|.+.|
T Consensus 82 fTRiG 86 (338)
T KOG0919 82 FTRIG 86 (338)
T ss_pred HHHHC
T ss_conf 12322
No 7
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=98.47 E-value=4.5e-07 Score=55.95 Aligned_cols=69 Identities=23% Similarity=0.457 Sum_probs=52.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 69641079478899998722208956999980695551122200123-------32321158975365788719998689
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
+|+|+|||+|.+++.+-+.+ +...|+|+|++|.|.+.++.|..- ++..+|.+++..+ ..+|.++.++|
T Consensus 103 ~VlD~faGvG~f~l~~ak~~---~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~~~--~~~DrvimnlP 177 (199)
T pfam02475 103 VVVDMFAGIGPFSIPIAKHS---KAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVILE--GVADRVIMNLP 177 (199)
T ss_pred EEEECCCCCCHHHHHHHHCC---CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCC--CCCCEEEECCC
T ss_conf 89981688657789986407---86489998289999999999999809998369992878786046--74009994897
Q ss_pred C
Q ss_conf 9
Q gi|254780516|r 76 C 76 (83)
Q Consensus 76 C 76 (83)
=
T Consensus 178 ~ 178 (199)
T pfam02475 178 K 178 (199)
T ss_pred C
T ss_conf 3
No 8
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=2.5e-07 Score=57.18 Aligned_cols=69 Identities=22% Similarity=0.437 Sum_probs=53.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 69641079478899998722208956999980695551122200123-------32321158975365788719998689
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
+|+|+|||+|-+++.+...+ ..+ |+|+|++|+|.+.++.|..- .++++|.+++..+. +.+|-++.|-|
T Consensus 191 ~V~DmFAGVGpfsi~~Ak~g---~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-~~aDrIim~~p 265 (341)
T COG2520 191 TVLDMFAGVGPFSIPIAKKG---RPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-GVADRIIMGLP 265 (341)
T ss_pred EEEECCCCCCCCHHHHHHCC---CCE-EEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCC-CCCCEEEECCC
T ss_conf 89983578654012466547---863-99994598999999999985576551567966488850204-66788983898
Q ss_pred C
Q ss_conf 9
Q gi|254780516|r 76 C 76 (83)
Q Consensus 76 C 76 (83)
=
T Consensus 266 ~ 266 (341)
T COG2520 266 K 266 (341)
T ss_pred C
T ss_conf 7
No 9
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.15 E-value=1.8e-06 Score=52.95 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=50.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 26964107947889999872220895699998069555112220012332------321158975365788719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
.+++|||||-|. +|+|.+- -|.+.|.++|.++.++++.+.|..... +..|+.++-.+.-..+|+++.-||
T Consensus 54 ~~vLDLFAGSGa--lGlEALS--RGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~~~~~~fDlIF~DPP 129 (198)
T PRK10909 54 ARCLDCFAGSGA--LGLEALS--RYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 129 (198)
T ss_pred CEEEECCCCCCH--HHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEECCC
T ss_conf 879982777468--8999998--799789999789999999999999848886799955699986255995218998999
Q ss_pred C
Q ss_conf 9
Q gi|254780516|r 76 C 76 (83)
Q Consensus 76 C 76 (83)
=
T Consensus 130 Y 130 (198)
T PRK10909 130 F 130 (198)
T ss_pred C
T ss_conf 7
No 10
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=98.10 E-value=1.3e-05 Score=48.66 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=50.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEEEEEECC---CCCCCEEEEE
Q ss_conf 69641079478899998722208956999980695551122200123-------3232115897536---5788719998
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQ---DIPDHDVLLA 72 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI~~~~~~---~~~~~D~l~g 72 (83)
.++|+|||+||....+.+. +..|.++|+|+.+.+.-++|-.- ..+++|..++-.+ .-..+|+++.
T Consensus 3 ivlD~fcG~Ggn~I~fA~~-----~~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~ 77 (165)
T pfam09445 3 IILDVFCGAGGNTIQFANV-----FCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFL 77 (165)
T ss_pred EEEECCCCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999377807999999975-----89899997989999999998998398731799977599997887635887558997
Q ss_pred CCCC
Q ss_conf 6899
Q gi|254780516|r 73 GFPC 76 (83)
Q Consensus 73 G~PC 76 (83)
+||=
T Consensus 78 sPPW 81 (165)
T pfam09445 78 SPPW 81 (165)
T ss_pred CCCC
T ss_conf 7999
No 11
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=97.97 E-value=2.2e-05 Score=47.45 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=49.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEE--------CCCCCCCEEEEEC
Q ss_conf 26964107947889999872220895699998069555112220012332321158975--------3657887199986
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK--------TQDIPDHDVLLAG 73 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~--------~~~~~~~D~l~gG 73 (83)
.+++|||||-|. +|+|.+- -|.+.|.++|.++.|.++.+.|.........+...+ ...-..+|++..-
T Consensus 45 ~~~LDLFaGSGs--lglEAlS--RGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~D 120 (181)
T pfam03602 45 ARVLDLFAGSGA--LGLEALS--RGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVFLD 120 (181)
T ss_pred CEEEECCCCCCH--HHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEECC
T ss_conf 879982787269--8999997--699889999699999999999999858997799810899998753357888766359
Q ss_pred CCCC
Q ss_conf 8997
Q gi|254780516|r 74 FPCQ 77 (83)
Q Consensus 74 ~PCq 77 (83)
||=.
T Consensus 121 PPY~ 124 (181)
T pfam03602 121 PPYA 124 (181)
T ss_pred CCCC
T ss_conf 9754
No 12
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.75 E-value=2.8e-05 Score=46.90 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=51.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-----C-CCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 69641079478899998722208956999980695551122200123-----3-23211589753657887199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----T-LIFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-----~-~~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
+++|||||+|.+++.|.. ..+.|.++|+++.|.+.-+.|-.. . .+.+|.+++....-...|+++--||=
T Consensus 236 ~vlDlycG~G~~sl~lA~-----~~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~d~vvvDPPR 310 (375)
T PRK03522 236 SMWDLFCGVGGFGLHCAT-----PDMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPELVLVNPPR 310 (375)
T ss_pred EEEEECCCCCHHHHHHHH-----CCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCC
T ss_conf 899965785388898764-----178899998459999999999998699876999737788876345689789989997
Q ss_pred CCC
Q ss_conf 754
Q gi|254780516|r 77 QPF 79 (83)
Q Consensus 77 q~f 79 (83)
.+.
T Consensus 311 ~Gl 313 (375)
T PRK03522 311 RGI 313 (375)
T ss_pred CCC
T ss_conf 775
No 13
>PHA02056 putative methyltransferase
Probab=97.68 E-value=8.3e-05 Score=44.54 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=54.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-CCCEEEEEECCCCCCCEEEEECCCCC
Q ss_conf 6964107947889999872220895699998069555112220012332-32115897536578871999868997
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDIPDHDVLLAGFPCQ 77 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-~~~DI~~~~~~~~~~~D~l~gG~PCq 77 (83)
|++|||+|||.++..+-...+.. +.| -+|.++.-..+=++-.|+.. +++|+-++... ..+|+.++-||--
T Consensus 67 ~iiDLCAGIG~LSy~~~~r~kp~--~iv-CVErN~~y~~vGkkilPeAtWI~~Dv~~~~~~--~~FD~aIsNPPFG 137 (279)
T PHA02056 67 KVLDLCAGIGRLSFCMLHRCKPE--KIV-CVELNPEFARIGKRLLPEAEWITSDVFEFESN--EKFDVVISNPPFG 137 (279)
T ss_pred EEEEECCCCCHHHHHHHHCCCCC--CEE-EEEECHHHHHHHHHCCCCCEEEECCEECCCCC--CCEEEEECCCCCC
T ss_conf 38882146123579998506886--358-99408579886432076402773231303566--6200453389976
No 14
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00022 Score=42.44 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=49.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEE--ECC----CC---CCCEEEEEC
Q ss_conf 696410794788999987222089569999806955511222001233232115897--536----57---887199986
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--KTQ----DI---PDHDVLLAG 73 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~--~~~----~~---~~~D~l~gG 73 (83)
+++|||+|-|+ +|+|.+.+ +...+.++|.|+.+.++++.|.......+..+-+ +.. .. +.+|++..-
T Consensus 46 ~~LDlFAGSGa--LGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 46 RVLDLFAGSGA--LGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred EEEEECCCCCH--HHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEEC
T ss_conf 89994687647--68999857--885699996598999999999998487612599840089998722778851289968
Q ss_pred CCCC
Q ss_conf 8997
Q gi|254780516|r 74 FPCQ 77 (83)
Q Consensus 74 ~PCq 77 (83)
||=.
T Consensus 122 PPy~ 125 (187)
T COG0742 122 PPYA 125 (187)
T ss_pred CCCC
T ss_conf 9975
No 15
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00045 Score=40.86 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=54.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEC---CCC-CCCEEEEECCCCCC
Q ss_conf 69641079478899998722208956999980695551122200123323211589753---657-88719998689975
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT---QDI-PDHDVLLAGFPCQP 78 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~---~~~-~~~D~l~gG~PCq~ 78 (83)
+++|+++|-|...+++...+.+ -.|.++|+++.|.++-+.|...... .++..+.. +.+ +++|+|+.=||=-+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~---~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD---AEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIP 188 (280)
T ss_pred CEEEECCCCCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCEEEECCCCCC
T ss_conf 1899658831999999961898---8799998999999999999998289-74798740033346888577996899888
Q ss_pred CC
Q ss_conf 43
Q gi|254780516|r 79 FS 80 (83)
Q Consensus 79 fS 80 (83)
-+
T Consensus 189 ~~ 190 (280)
T COG2890 189 AE 190 (280)
T ss_pred CC
T ss_conf 85
No 16
>KOG1227 consensus
Probab=97.38 E-value=4.6e-05 Score=45.86 Aligned_cols=55 Identities=33% Similarity=0.481 Sum_probs=40.4
Q ss_pred EEEECCCCCHHHH-HHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEEEEEECC
Q ss_conf 9641079478899-998722208956999980695551122200123-------3232115897536
Q gi|254780516|r 4 ITDLFCGIGGIRL-DLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQ 62 (83)
Q Consensus 4 v~~LFsG~GG~~~-gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI~~~~~~ 62 (83)
++|||+|||-|.+ -+-.+ +.++|+|+||+|++.+.++.|-.. ..+++|=+....+
T Consensus 198 iVDLYAGIGYFTlpflV~a----gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~ 260 (351)
T KOG1227 198 IVDLYAGIGYFTLPFLVTA----GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR 260 (351)
T ss_pred HHHHHCCCCEEEEEHHHCC----CCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 1223426544874023005----74579999458799999998777411578878665102366755
No 17
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00053 Score=40.52 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=50.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-----CCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 69641079478899998722208956999980695551122200123-----323211589753657887199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-----~~~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
+|+||-||.|-+.+|...+ |...|.++|+|+.|.++.+.|-+. .....||+++.. +.|.++.-||=
T Consensus 48 ~V~DlG~GTG~La~ga~~l----Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~----~~dtvimNPPF 118 (198)
T COG2263 48 TVLDLGAGTGILAIGAALL----GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRG----KFDTVIMNPPF 118 (198)
T ss_pred EEEECCCCCCHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHCCC----CCCEEEECCCC
T ss_conf 8888278847889999862----97179999369899999998888608846999821011477----66669978997
No 18
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=97.25 E-value=0.00025 Score=42.11 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=48.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC-----CC-CCCCEEEEEECCC---CCCCEEEEEC
Q ss_conf 6964107947889999872220895699998069555112220012-----33-2321158975365---7887199986
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----NT-LIFGDIAKIKTQD---IPDHDVLLAG 73 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~-----~~-~~~~DI~~~~~~~---~~~~D~l~gG 73 (83)
+++|||||+|.+++-|.. ..+.|.++|.++.|.+--+.|-. +. .+.+|+.+.-.+. ...+|+++--
T Consensus 297 ~VlDLYcGvGtfsl~LA~-----~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D~vi~D 371 (440)
T PRK13168 297 RVLDLFCGLGNFTLPLAR-----QAAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFDKVLLD 371 (440)
T ss_pred EEEEEECCCCCCCHHHHH-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 899862385621111353-----067688760579999999999997499987899746456635578637999989999
Q ss_pred CCCCC
Q ss_conf 89975
Q gi|254780516|r 74 FPCQP 78 (83)
Q Consensus 74 ~PCq~ 78 (83)
||=.+
T Consensus 372 PPR~G 376 (440)
T PRK13168 372 PPRAG 376 (440)
T ss_pred CCCCC
T ss_conf 88527
No 19
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0003 Score=41.73 Aligned_cols=69 Identities=29% Similarity=0.437 Sum_probs=49.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCC--CCCEEEEECC
Q ss_conf 6964107947889999872220895699998069555112220012332------3211589753657--8871999868
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDI--PDHDVLLAGF 74 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~--~~~D~l~gG~ 74 (83)
+++|||||+|.|++.|.. .++.|.++|+.+.+.+.-+.|-.... +.+|..++..+.. ...|.++--|
T Consensus 296 ~vlDlYCGvG~f~l~lA~-----~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 296 RVLDLYCGVGTFGLPLAK-----RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred EEEECCCCCCHHHHHHCC-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEECC
T ss_conf 799935588701355312-----465799996489999999999997398877999586888865100257999899899
Q ss_pred CC
Q ss_conf 99
Q gi|254780516|r 75 PC 76 (83)
Q Consensus 75 PC 76 (83)
|=
T Consensus 371 PR 372 (432)
T COG2265 371 PR 372 (432)
T ss_pred CC
T ss_conf 99
No 20
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=97.19 E-value=0.00055 Score=40.45 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=51.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC----CCCEEEEEECC----------CCC-CC
Q ss_conf 6964107947889999872220895699998069555112220012332----32115897536----------578-87
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL----IFGDIAKIKTQ----------DIP-DH 67 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~----~~~DI~~~~~~----------~~~-~~ 67 (83)
++||+|||=|+ +|+|.+.+ +++.+.++|.|+.+++++..|+.... .-+.+..+--. .=+ .+
T Consensus 58 ~~LD~FAGsG~--LG~EALSR--gA~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~~~~~ts~~ 133 (210)
T TIGR00095 58 HFLDLFAGSGS--LGLEALSR--GAKSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFLAKKQTSPF 133 (210)
T ss_pred EEEEEECCCHH--HHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCE
T ss_conf 27885406446--53766401--416237873686799999999999888715853000000025666577651799611
Q ss_pred EEEEECCCC
Q ss_conf 199986899
Q gi|254780516|r 68 DVLLAGFPC 76 (83)
Q Consensus 68 D~l~gG~PC 76 (83)
|+|.--||=
T Consensus 134 d~iylDPPf 142 (210)
T TIGR00095 134 DIIYLDPPF 142 (210)
T ss_pred EEEEECCCC
T ss_conf 478714888
No 21
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.18 E-value=0.0015 Score=38.25 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=51.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-------CCCEEEEEECCCC--CCCEEEEE
Q ss_conf 26964107947889999872220895699998069555112220012332-------3211589753657--88719998
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-------IFGDIAKIKTQDI--PDHDVLLA 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-------~~~DI~~~~~~~~--~~~D~l~g 72 (83)
.|++|+++|-|...+.+.... .-..+.++|+++.|.++-+.|..... +.+|+.+ .+ .++|+|+.
T Consensus 123 ~~iLDlGtGSG~Iai~la~~~---p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~----~~~~~~fDlIVS 195 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAF---PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA----ALPGRKYDLIVS 195 (284)
T ss_pred CEEEEECCCCHHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH----HCCCCCCCEEEE
T ss_conf 715552168079999999878---9987999989999999999999860854336888351433----145777787997
Q ss_pred CCCCCCC
Q ss_conf 6899754
Q gi|254780516|r 73 GFPCQPF 79 (83)
Q Consensus 73 G~PCq~f 79 (83)
-||=-+-
T Consensus 196 NPPYI~~ 202 (284)
T TIGR03533 196 NPPYVDA 202 (284)
T ss_pred CCCCCCH
T ss_conf 7997884
No 22
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.10 E-value=0.0019 Score=37.71 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=50.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-------CCCEEEEEECCCCCCCEEEEECC
Q ss_conf 26964107947889999872220895699998069555112220012332-------32115897536578871999868
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-------IFGDIAKIKTQDIPDHDVLLAGF 74 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-------~~~DI~~~~~~~~~~~D~l~gG~ 74 (83)
.|++|+++|-|...+.+..... . -.|.++|+++.|.++-+.|..... +.+|+.+--. -.++|+|+.-|
T Consensus 135 ~rilDlGtGSG~Iaisla~~~p--~-~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~~l~--~~~fDlIvSNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP--D-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHCC--C-CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCC--CCCCCEEEECC
T ss_conf 7277742782799999998789--9-88999858999999999999983887738998040221268--87507799679
Q ss_pred CCCC
Q ss_conf 9975
Q gi|254780516|r 75 PCQP 78 (83)
Q Consensus 75 PCq~ 78 (83)
|=-+
T Consensus 210 PYI~ 213 (307)
T PRK11805 210 PYVD 213 (307)
T ss_pred CCCC
T ss_conf 9788
No 23
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.06 E-value=0.0024 Score=37.21 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=51.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECC---CCC--CCEEEEECCCC
Q ss_conf 2696410794788999987222089569999806955511222001233232115897536---578--87199986899
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ---DIP--DHDVLLAGFPC 76 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~---~~~--~~D~l~gG~PC 76 (83)
.|++|+++|-|...+++..... +. .+.++|+++.|.++-+.|...... .+|+-+..+ .++ ++|+|+.-||=
T Consensus 111 ~~ilDlgtGSGcI~isLa~~~p--~~-~v~a~DiS~~Al~~A~~Na~~~~l-~~v~~~~~d~~~~~~~~~fDlIVSNPPY 186 (277)
T PRK09328 111 CRILDLGTGTGAIALALASERP--DC-EVTAVDRMPDAVALAQRNAQHLAI-KNVRILQSDWFSALSGQQFAMIVSNPPY 186 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHCC--CC-EEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCHHHCCCCCCCEEEECCCC
T ss_conf 8189954556999999998677--98-999964899999999999998098-8699994475211378777889978998
Q ss_pred CCC
Q ss_conf 754
Q gi|254780516|r 77 QPF 79 (83)
Q Consensus 77 q~f 79 (83)
-+.
T Consensus 187 I~~ 189 (277)
T PRK09328 187 IDA 189 (277)
T ss_pred CCC
T ss_conf 770
No 24
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=97.04 E-value=0.0027 Score=36.95 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=51.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 26964107947889999872220895699998069555112220012332------321158975365788719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
.|++|+++|-|...+++.+... + -.+.++|+++.|.++-+.|..... +.+|+.+-- .-.++|+++.-||
T Consensus 89 ~~ilDlgtGSG~I~i~la~~~~--~-~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvsNPP 163 (251)
T TIGR03534 89 LKVLDLGTGSGAIALALAKERP--D-ARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPL--PGGKFDLIVSNPP 163 (251)
T ss_pred CEEEEECCCHHHHHHHHHHHCC--C-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCC--CCCCCCEEEECCC
T ss_conf 8699955671699999999679--9-789999898799999999999809982686513143215--6898668997899
Q ss_pred CCCCC
Q ss_conf 97543
Q gi|254780516|r 76 CQPFS 80 (83)
Q Consensus 76 Cq~fS 80 (83)
=-+.+
T Consensus 164 YI~~~ 168 (251)
T TIGR03534 164 YIPEA 168 (251)
T ss_pred CCCHH
T ss_conf 88745
No 25
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.98 E-value=0.00093 Score=39.28 Aligned_cols=71 Identities=24% Similarity=0.265 Sum_probs=50.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEEEEEECCCCC-CCEEEEECC
Q ss_conf 69641079478899998722208956999980695551122200123-------3232115897536578-871999868
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQDIP-DHDVLLAGF 74 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI~~~~~~~~~-~~D~l~gG~ 74 (83)
|++||.||.|...+.+..-. .+ ..+.++|+++.+.+.-++|... ..++.||+++...... .+|++++-|
T Consensus 47 ~IlDlGaG~G~l~L~la~r~--~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 47 RILDLGAGNGALGLLLAQRT--EK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred EEEEECCCCCHHHHHHHCCC--CC-CCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 69883689468999974558--77-8079998179999999998861861340167643088765423656547899598
Q ss_pred CC
Q ss_conf 99
Q gi|254780516|r 75 PC 76 (83)
Q Consensus 75 PC 76 (83)
|=
T Consensus 124 Py 125 (248)
T COG4123 124 PY 125 (248)
T ss_pred CC
T ss_conf 98
No 26
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.95 E-value=0.0013 Score=38.50 Aligned_cols=72 Identities=21% Similarity=0.388 Sum_probs=50.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC-----C-CCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 6964107947889999872220895699998069555112220012-----3-323211589753657887199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----N-TLIFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~-----~-~~~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
||+|+-||.|.....+.+. .+ ..+.++|+++...+..+.+.. + ..+.+|+.+.....-..+|+++..++.
T Consensus 1 rVLDiGcG~G~~~~~l~~~---~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASG---PG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CEEEEECCCCHHHHHHHHC---CC-CEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHCCCEEEEEEECCE
T ss_conf 9999988879999999956---89-8899998988899999998753278864671488678863205753199991750
Q ss_pred CC
Q ss_conf 75
Q gi|254780516|r 77 QP 78 (83)
Q Consensus 77 q~ 78 (83)
+.
T Consensus 77 ~~ 78 (107)
T cd02440 77 HH 78 (107)
T ss_pred EC
T ss_conf 10
No 27
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.76 E-value=0.0018 Score=37.87 Aligned_cols=72 Identities=24% Similarity=0.379 Sum_probs=46.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC-----CCC-CCCEEEEE-------------ECCC
Q ss_conf 6964107947889999872220895699998069555112220012-----332-32115897-------------5365
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----NTL-IFGDIAKI-------------KTQD 63 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~-----~~~-~~~DI~~~-------------~~~~ 63 (83)
+++|||||+|.+++.|... ++.|.++|+++.|.+.-+.|-. +.. +.+|..++ ..-+
T Consensus 210 ~vlDLYcG~Gtfsl~LA~~-----~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~~~~~l~~~~ 284 (363)
T PRK05031 210 DLLELYCGNGNFTLALARN-----FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 284 (363)
T ss_pred CEEEEECCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHCCCCCC
T ss_conf 2898605866426998862-----68799995389999999999998699864999658999999873431010012466
Q ss_pred CC--CCEEEEECCCCCCC
Q ss_conf 78--87199986899754
Q gi|254780516|r 64 IP--DHDVLLAGFPCQPF 79 (83)
Q Consensus 64 ~~--~~D~l~gG~PCq~f 79 (83)
++ ++|+++--||=.+.
T Consensus 285 ~~~~~~d~vvvDPPR~Gl 302 (363)
T PRK05031 285 LKSYNFSTIFVDPPRAGL 302 (363)
T ss_pred CCCCCCCEEEECCCCCCC
T ss_conf 443558648989998887
No 28
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.66 E-value=0.0071 Score=34.84 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=51.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECC---CC--CCCEEEEECCCC
Q ss_conf 2696410794788999987222089569999806955511222001233232115897536---57--887199986899
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ---DI--PDHDVLLAGFPC 76 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~---~~--~~~D~l~gG~PC 76 (83)
++++||..|-|...+.+.... .--.+.++|+++.|.++-+.|-.......-|+=+..+ .+ .++|+|+.-||=
T Consensus 137 ~~ILDLGTGSGcIaISLa~e~---p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l~~~kFDlIVSNPPY 213 (503)
T PRK01544 137 LNILELGTGSGCIAISLLCEL---PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIGKQKFDFIVSNPPY 213 (503)
T ss_pred CEEEEECCCHHHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCEEEECCCC
T ss_conf 727884666799999999867---89989999898999999999999808820179996553101588872479838998
Q ss_pred CCCC
Q ss_conf 7543
Q gi|254780516|r 77 QPFS 80 (83)
Q Consensus 77 q~fS 80 (83)
-+-+
T Consensus 214 I~~~ 217 (503)
T PRK01544 214 ISHS 217 (503)
T ss_pred CCHH
T ss_conf 8756
No 29
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=96.63 E-value=0.0028 Score=36.90 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=33.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC
Q ss_conf 6964107947889999872220895699998069555112220012
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~ 48 (83)
+++|||||+|.+++.+... ++.|.++|+.+.|.+.-+.|-.
T Consensus 200 ~vlDlYcG~Gtfsl~lA~~-----~~~V~GvE~~~~AV~~A~~Na~ 240 (353)
T pfam05958 200 DLLELYCGNGNFSLALAQN-----FRRVLATEIAKPSVNAAQYNIA 240 (353)
T ss_pred CEEEEECCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHH
T ss_conf 5899846888888999864-----7879999625999999999899
No 30
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=96.62 E-value=0.0072 Score=34.83 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=48.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC------CCCCEEEEEECCCC--CCCEEEEECC
Q ss_conf 696410794788999987222089569999806955511222001233------23211589753657--8871999868
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIAKIKTQDI--PDHDVLLAGF 74 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~------~~~~DI~~~~~~~~--~~~D~l~gG~ 74 (83)
|++||.||.|-..+.+.+... . ..+.++|+++.|.+.-+.|.... .+..|+.+ .+ ..+|+|+.=|
T Consensus 34 ~vLDlGcG~G~i~~~la~~~p--~-~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~----~~~~~~fD~IvsNP 106 (170)
T pfam05175 34 KVLDLGCGYGVLGAALAKRSP--D-LEVTMVDINARALESARANLAANGLENGEVFWSDLYS----AVEPGKFDLIISNP 106 (170)
T ss_pred CEEEECCCCCHHHHHHHHHCC--C-CEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----CCCCCCEEEEEECC
T ss_conf 499977648298999999789--8-6798515449999999999998099848999744666----57788660899897
Q ss_pred CC
Q ss_conf 99
Q gi|254780516|r 75 PC 76 (83)
Q Consensus 75 PC 76 (83)
|=
T Consensus 107 P~ 108 (170)
T pfam05175 107 PF 108 (170)
T ss_pred CC
T ss_conf 72
No 31
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.58 E-value=0.0076 Score=34.72 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=54.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-CCEEEEEECCCC----C-CCEEEEECCCC
Q ss_conf 69641079478899998722208956999980695551122200123323-211589753657----8-87199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI----P-DHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-~~DI~~~~~~~~----~-~~D~l~gG~PC 76 (83)
||+||||..||=+.-+.....+.+ .+.|+|+++...+.++.|....-+ .--++..+...+ | .+|-|.--.||
T Consensus 116 ~VLDlCAAPGGKtt~la~~m~~~G--~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~~~FD~ILvDaPC 193 (471)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQG--ALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPEMFDAILLDAPC 193 (471)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCC--EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCC
T ss_conf 899957785489999999758996--699983889999999999997199847999358667403230106679987888
Q ss_pred CCCC
Q ss_conf 7543
Q gi|254780516|r 77 QPFS 80 (83)
Q Consensus 77 q~fS 80 (83)
-+-.
T Consensus 194 SG~G 197 (471)
T PRK11933 194 SGEG 197 (471)
T ss_pred CCCE
T ss_conf 8873
No 32
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=96.41 E-value=0.0084 Score=34.49 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=54.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC------CCCCEEEEEECCCC-CCCEEEEECC
Q ss_conf 2696410794788999987222089569999806955511222001233------23211589753657-8871999868
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIAKIKTQDI-PDHDVLLAGF 74 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~------~~~~DI~~~~~~~~-~~~D~l~gG~ 74 (83)
.+|+|+||+.||-+..+-....+. -.+.|+|+++...+.++.|.... ....|-++...+.. ..+|.+.--.
T Consensus 86 ~~VLD~CAaPGgKt~~la~l~~~~--g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~fD~vLvDa 163 (277)
T pfam01189 86 EFILDMCAAPGGKTTHIAELMKNE--GTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEFDRILLDA 163 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCC--CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEECC
T ss_conf 989883678881699999875898--779983797899999999999759974799966444557434666665799728
Q ss_pred CCCCCC
Q ss_conf 997543
Q gi|254780516|r 75 PCQPFS 80 (83)
Q Consensus 75 PCq~fS 80 (83)
||.+.-
T Consensus 164 PCSg~G 169 (277)
T pfam01189 164 PCSGTG 169 (277)
T ss_pred CCCCCC
T ss_conf 988986
No 33
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.28 E-value=0.0024 Score=37.21 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=51.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC--------CCCCEEEEEECCCCC---CCEEEE
Q ss_conf 696410794788999987222089569999806955511222001233--------232115897536578---871999
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--------LIFGDIAKIKTQDIP---DHDVLL 71 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~--------~~~~DI~~~~~~~~~---~~D~l~ 71 (83)
+||+|||=.||+++..-.+ |.+.|..+|.++.+.+.-+.|+.-+ .+.+|+.++-.+.-. +.|+|+
T Consensus 220 rvLNlFsYTGgfsv~Aa~g----GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALG----GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred EEEEECCCCCHHHHHHHHC----CCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 6788646676999999866----997148982657899999999986299710105672239999999985599556899
Q ss_pred ECCCC
Q ss_conf 86899
Q gi|254780516|r 72 AGFPC 76 (83)
Q Consensus 72 gG~PC 76 (83)
--||=
T Consensus 296 lDPPs 300 (393)
T COG1092 296 LDPPS 300 (393)
T ss_pred ECCCC
T ss_conf 78810
No 34
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=96.27 E-value=0.0063 Score=35.10 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=45.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC-------CCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 696410794788999987222089569999806955511222001233-------2321158975365788719998689
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~-------~~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
.++|.|||-|++-+ +.+....+. .++.+|+|+.+.+.-+.|.... ...+|++++.... ..+|+++.-||
T Consensus 31 ~vlDP~CGSGtilI--EAa~~~~~~-~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~-~~~d~Iv~nPP 106 (171)
T pfam01170 31 PLLDPFCGSGTILI--EAALMGANV-ALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLN-GSVDTIVTDPP 106 (171)
T ss_pred EEEECCCCCCHHHH--HHHHHHCCC-CCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCC-CCCEEEEECCC
T ss_conf 78868998789999--999961358-953675879999999999998289984699976665387987-88318998898
No 35
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=96.25 E-value=0.015 Score=33.23 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=50.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC--------CCCEEEEEE--CCCCCCCEEEE
Q ss_conf 26964107947889999872220895699998069555112220012332--------321158975--36578871999
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--------IFGDIAKIK--TQDIPDHDVLL 71 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~--------~~~DI~~~~--~~~~~~~D~l~ 71 (83)
-||+++||=.|||++..-.+ |.+.|.++|.++.|.+.-+.|+.-+. +..|+.+.- .+.-..+|+++
T Consensus 125 ~rvLn~Fsytg~fsv~A~~~----GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~Vi 200 (286)
T pfam10672 125 KNVLNLFAYTCGFSVAAIAG----GASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVI 200 (286)
T ss_pred CCEEEECCCCCHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEE
T ss_conf 83253114786999998767----98779999198899999999999769995436999830999999986179998799
Q ss_pred ECCCC
Q ss_conf 86899
Q gi|254780516|r 72 AGFPC 76 (83)
Q Consensus 72 gG~PC 76 (83)
--||=
T Consensus 201 lDPPs 205 (286)
T pfam10672 201 IDPPS 205 (286)
T ss_pred ECCCC
T ss_conf 87999
No 36
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.20 E-value=0.021 Score=32.54 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=51.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCC---C---CCCEEEEECCC
Q ss_conf 26964107947889999872220895699998069555112220012332321158975365---7---88719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD---I---PDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~---~---~~~D~l~gG~P 75 (83)
.+|+|+|||.||=+.-+-.+.. +. .|.|+|+++...+..+.|....-...++...+... + ..+|.+.--.|
T Consensus 247 ~~VLD~CAaPGGKt~~la~~~~--~~-~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~~~~~~~fD~ILlDaP 323 (428)
T PRK10901 247 EHILDLCAAPGGKTTHILEVAP--EA-QVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 323 (428)
T ss_pred CEEEEECCCCCHHHHHHHHHCC--CC-CEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCEEEECCC
T ss_conf 8798716887668999999645--89-28999698889999999999759973999776557233134456787997589
Q ss_pred CCCCC
Q ss_conf 97543
Q gi|254780516|r 76 CQPFS 80 (83)
Q Consensus 76 Cq~fS 80 (83)
|.+.=
T Consensus 324 CSg~G 328 (428)
T PRK10901 324 CSATG 328 (428)
T ss_pred CCCCE
T ss_conf 88872
No 37
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.023 Score=32.29 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=53.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCCC--CCEEEEECC
Q ss_conf 6964107947889999872220895699998069555112220012332------32115897536578--871999868
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDIP--DHDVLLAGF 74 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~~--~~D~l~gG~ 74 (83)
+|+|+|++.||=+.-+-++..+.+ ..|.|+|.++...+.++.|....- ...|-+.+...... .+|-+.--.
T Consensus 159 ~VlD~cAAPGGKTthla~~~~~~~-~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDa 237 (355)
T COG0144 159 RVLDLCAAPGGKTTHLAELMENEG-AIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDA 237 (355)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 688807999769999999668998-7699744987899999999997199834899513301431134557778599879
Q ss_pred CCCCCC
Q ss_conf 997543
Q gi|254780516|r 75 PCQPFS 80 (83)
Q Consensus 75 PCq~fS 80 (83)
||.+.-
T Consensus 238 PCSg~G 243 (355)
T COG0144 238 PCSGTG 243 (355)
T ss_pred CCCCCE
T ss_conf 998771
No 38
>KOG3420 consensus
Probab=95.98 E-value=0.007 Score=34.87 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=51.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-----CCEEEEEECCCCCCCEEEEECCC
Q ss_conf 269641079478899998722208956999980695551122200123323-----21158975365788719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-----FGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-----~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
.++++|.||+|-++.|+.+. +-+.|.-.|||+.|.++...|-.+-.+ +.||.+..... .-+|..+.-||
T Consensus 50 kkl~DLgcgcGmLs~a~sm~----~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~-g~fDtaviNpp 123 (185)
T KOG3420 50 KKLKDLGCGCGMLSIAFSMP----KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKG-GIFDTAVINPP 123 (185)
T ss_pred CCHHHHCCCHHHHHHHHHCC----CCCEEEEEECCHHHHHHHHHCHHHHHHHHHEEEEECCCHHCCC-CEEEEEEECCC
T ss_conf 46225247611567775057----8733786405889999986166875233421222215511058-76766786689
No 39
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=95.64 E-value=0.016 Score=33.07 Aligned_cols=68 Identities=26% Similarity=0.486 Sum_probs=48.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC-----CC-CCCCEEEEEECCCC---CCCEEEEEC
Q ss_conf 6964107947889999872220895699998069555112220012-----33-23211589753657---887199986
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----NT-LIFGDIAKIKTQDI---PDHDVLLAG 73 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~-----~~-~~~~DI~~~~~~~~---~~~D~l~gG 73 (83)
+|+|+|||+|-+++-|-+ ..+.|..+|.-+.+.+-=+.|-. +. ...+++.+.-++-. -.+|.|+=-
T Consensus 297 ~V~DayCG~GtftLpLA~-----qak~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~~p~~~~e~~~~D~~llD 371 (434)
T TIGR00479 297 KVVDAYCGVGTFTLPLAK-----QAKSVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETVLPKQPWEGISPDVVLLD 371 (434)
T ss_pred EEEEEECCCCCCHHHHHH-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEC
T ss_conf 578631575520044440-----121888871437678999888886035320133312321101442226778988888
Q ss_pred CC
Q ss_conf 89
Q gi|254780516|r 74 FP 75 (83)
Q Consensus 74 ~P 75 (83)
||
T Consensus 372 PP 373 (434)
T TIGR00479 372 PP 373 (434)
T ss_pred CC
T ss_conf 88
No 40
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.63 E-value=0.036 Score=31.34 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=50.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-----CCCEEEEEECCCCCCCEEEEECCCCC
Q ss_conf 6964107947889999872220895699998069555112220012332-----32115897536578871999868997
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-----IFGDIAKIKTQDIPDHDVLLAGFPCQ 77 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-----~~~DI~~~~~~~~~~~D~l~gG~PCq 77 (83)
+++|+++|-|...+++.... .--.+.++|+++.|.++-+.|..... ..+|+.+-- -.++|+++.-||.-
T Consensus 112 ~~lDlGtGSG~I~isla~~~---p~~~v~avDiS~~Al~~A~~Na~~~~~~v~~~~~dl~~~~---~~~~DlIvSNPPYI 185 (285)
T PRK09329 112 TFYDVCCGSGCIGLAIKKHC---PHVHVVLSDICPQALAVAKSNAKSNGLDVDFLLGDLFAPF---SRPADAFVCNPPYL 185 (285)
T ss_pred EEEEECCCHHHHHHHHHHHC---CCCEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH---CCCCCEEEECCCCC
T ss_conf 78884541799999999858---9865880337699999999999972994799976300333---47678899899988
Q ss_pred CCC
Q ss_conf 543
Q gi|254780516|r 78 PFS 80 (83)
Q Consensus 78 ~fS 80 (83)
+-+
T Consensus 186 ~~~ 188 (285)
T PRK09329 186 SFK 188 (285)
T ss_pred CHH
T ss_conf 844
No 41
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=95.58 E-value=0.039 Score=31.16 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=44.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCC--CCCEEEEE
Q ss_conf 269641079478899998722208956999980695551122200123323211589753657--88719998
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI--PDHDVLLA 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~--~~~D~l~g 72 (83)
.+++|+=||-|=++.+..++ |.+.|.++|+|+.|.++-+.|...+..-..+......+. .++|++++
T Consensus 162 ~~vlD~GcGSGILaIaA~kl----Ga~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~~~~~~~~~~DlIvA 230 (294)
T pfam06325 162 ETVLDVGCGSGILAIAALKL----GAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGDLPEGKADVVVA 230 (294)
T ss_pred CEEEEECCCHHHHHHHHHHC----CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEE
T ss_conf 86785056508999999975----9996899988899999999999976998317996443155664578984
No 42
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.46 E-value=0.058 Score=30.27 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=43.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCC---C-CCCEEEEE
Q ss_conf 26964107947889999872220895699998069555112220012332321158975365---7-88719998
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD---I-PDHDVLLA 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~---~-~~~D~l~g 72 (83)
.+|+|+=||-|=++.+..++ |.+.|.++|+|+.|.++-+.|..-+..- |...+...+ . .++|++++
T Consensus 164 ~~vLDvG~GSGILaIaA~kl----Ga~~v~a~DiD~~Av~~a~eN~~lN~v~-~~~~~~~~~~~~~~~~~DlvvA 233 (298)
T PRK00517 164 KTVLDVGCGSGILAIAAAKL----GAKPVLAIDIDPQAVEAARENAELNGVD-DRLELYLPEDQPLEGKADVIVA 233 (298)
T ss_pred CEEEEECCCCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCCEEEE
T ss_conf 86887157706999999974----9984999989899999999999986998-4268961664344676468997
No 43
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=95.13 E-value=0.041 Score=31.03 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=34.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC
Q ss_conf 26964107947889999872220895699998069555112220012
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~ 48 (83)
++++|.+||.|= .|++.+.+-.+.+.|++||+++.|.+..+.|..
T Consensus 51 ~~iLDalsasGi--R~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~ 95 (375)
T pfam02005 51 IIVLDALSASGI--RAIRFALEVPGVEEVFANDISPKAVELIKENVK 95 (375)
T ss_pred CEEEECCCCCHH--HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 669754675419--999999746998669995599899999999888
No 44
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.75 E-value=0.036 Score=31.33 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=50.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECC---CCCCCEEEEECCCCCC
Q ss_conf 2696410794788999987222089569999806955511222001233232115897536---5788719998689975
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ---DIPDHDVLLAGFPCQP 78 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~---~~~~~D~l~gG~PCq~ 78 (83)
.||+|+.||-|--+.+..++ |.+-|++.|+++++....+.|-...-. +|.-+..+ +-+.+|++..|=-|-+
T Consensus 81 krVLd~gagsgLvaIAaa~a----GA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARA----GAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIGSPPAFDLLLAGDLFYN 154 (218)
T ss_pred CEEEECCCCCCHHHHHHHHH----HHHHHHHCCCCHHHHHHHHCCHHHCCC--EEEEEECCCCCCCCCEEEEEEECEECC
T ss_conf 53244156667088999985----037887627884788885306221562--167743133689864038985030028
Q ss_pred CC
Q ss_conf 43
Q gi|254780516|r 79 FS 80 (83)
Q Consensus 79 fS 80 (83)
.+
T Consensus 155 ~~ 156 (218)
T COG3897 155 HT 156 (218)
T ss_pred CH
T ss_conf 35
No 45
>KOG2904 consensus
Probab=94.55 E-value=0.15 Score=28.25 Aligned_cols=71 Identities=23% Similarity=0.236 Sum_probs=48.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEE---------CC--CCCCCEEEE
Q ss_conf 6964107947889999872220895699998069555112220012332321158975---------36--578871999
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK---------TQ--DIPDHDVLL 71 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~---------~~--~~~~~D~l~ 71 (83)
.++|+++|-|.+++++-... .=-++-|+|..+.|.+.-..|-......+-|..++ .. ...+.|+|+
T Consensus 151 ~ildlgtGSGaIslsll~~L---~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904 151 HILDLGTGSGAISLSLLHGL---PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred EEEEECCCCCHHHHHHHHCC---CCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEE
T ss_conf 68870578318899998347---873489985328899999988998741584689841222012565545457524885
Q ss_pred ECCCC
Q ss_conf 86899
Q gi|254780516|r 72 AGFPC 76 (83)
Q Consensus 72 gG~PC 76 (83)
+-||-
T Consensus 228 sNPPY 232 (328)
T KOG2904 228 SNPPY 232 (328)
T ss_pred CCCCC
T ss_conf 38996
No 46
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.48 E-value=0.057 Score=30.33 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=47.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHC-CC-----C--CCCCCEEEEEECCCCC--CCEEEE
Q ss_conf 269641079478899998722208956999980695551122200-12-----3--3232115897536578--871999
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-FP-----N--TLIFGDIAKIKTQDIP--DHDVLL 71 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n-~~-----~--~~~~~DI~~~~~~~~~--~~D~l~ 71 (83)
-||+|.|-|-|-.....-+ .|...|..+|.||+..+.-+.| |. . ..++||..++ .++++ .+|.|+
T Consensus 136 ~rVLDtC~GLGYtAi~a~~----rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~-V~~~~D~sfDaIi 210 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALE----RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV-VKDFDDESFDAII 210 (287)
T ss_pred CEEEEECCCCCHHHHHHHH----CCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHH-HHCCCCCCCCEEE
T ss_conf 7844324671389999987----5874899996087727741358898420200317861659999-7418865301686
Q ss_pred ECCCCCCCCCCC
Q ss_conf 868997543689
Q gi|254780516|r 72 AGFPCQPFSQAG 83 (83)
Q Consensus 72 gG~PCq~fS~aG 83 (83)
.-|| -||.||
T Consensus 211 HDPP--RfS~Ag 220 (287)
T COG2521 211 HDPP--RFSLAG 220 (287)
T ss_pred ECCC--CCCHHH
T ss_conf 0797--331023
No 47
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=94.12 E-value=0.059 Score=30.25 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=45.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCC--------CCCEEEEE
Q ss_conf 69641079478899998722208956999980695551122200123323211589753657--------88719998
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI--------PDHDVLLA 72 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~--------~~~D~l~g 72 (83)
+++|+=||=|=++.|+.++ |.+.+.++|+||-|.+.=|.|+....+..++.......+ .++|+|++
T Consensus 199 ~viD~GCGSGIL~IAa~~L----Ga~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vPe~~~~~e~~~DViVA 272 (330)
T TIGR00406 199 KVIDVGCGSGILSIAALKL----GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVPELEQPIEGKADVIVA 272 (330)
T ss_pred EEEEECCCHHHHHHHHHHH----HHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf 4787126717899999975----1231122137728999999768745886457643205787534532256675788
No 48
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=94.02 E-value=0.13 Score=28.51 Aligned_cols=70 Identities=29% Similarity=0.398 Sum_probs=43.5
Q ss_pred CCCCCHH-HHHHHHHHHCCCCE-EEEEEECCHHHHHHHHH--CC---CC--CCCCCEEEEEECCCCCCCEEEE----ECC
Q ss_conf 0794788-99998722208956-99998069555112220--01---23--3232115897536578871999----868
Q gi|254780516|r 8 FCGIGGI-RLDLEQTFNHRNVE-CFFSSEINPYSVKTYQA--NF---PN--TLIFGDIAKIKTQDIPDHDVLL----AGF 74 (83)
Q Consensus 8 FsG~GG~-~~gl~~a~~~~~~~-~v~a~e~d~~a~~~y~~--n~---~~--~~~~~DI~~~~~~~~~~~D~l~----gG~ 74 (83)
=+|=|.+ +.+|+.+ ...+.+ .++|+|.+++|.-++++ |. ++ +.+.+|+++.+..+ ++||++ |+|
T Consensus 194 GAGRGPLV~~~l~A~-~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~p~--k~Di~VSELLGSF 270 (447)
T pfam05185 194 GAGRGPLVDRALRAA-EETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKGPE--KADILVSELLGSF 270 (447)
T ss_pred CCCCCHHHHHHHHHH-HHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCC--CCCEEEEECCCCC
T ss_conf 589648999999999-9819966999995687799999998505431780699908000579987--7358975211666
Q ss_pred CCCCCC
Q ss_conf 997543
Q gi|254780516|r 75 PCQPFS 80 (83)
Q Consensus 75 PCq~fS 80 (83)
=|...|
T Consensus 271 GDNELS 276 (447)
T pfam05185 271 GDNELS 276 (447)
T ss_pred CCCCCC
T ss_conf 665579
No 49
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=93.80 E-value=0.16 Score=28.06 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=52.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC---C-CCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 6964107947889999872220895699998069555112220012---3-323211589753657887199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---N-TLIFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~---~-~~~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
+|+|.=.|.|.++..|-..+ ..|.|+|+|+..++.++..+. + +.+.+|+-+++...+...+.+++--|=
T Consensus 33 ~VlEIGpG~GaLT~~Ll~~~-----~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 33 NVLEIGPGLGALTEPLLERA-----ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred EEEEECCCCCHHHHHHHHHC-----CEEEEEEECHHHHHHHHHHHCCCCCEEEEECCHHCCCCHHHCCCCEEEECCCC
T ss_conf 69997898778899999606-----95799996889999999750656655999472424751351578889980897
No 50
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=92.80 E-value=0.31 Score=26.65 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=47.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 26964107947889999872220895699998069555112220012332------321158975365788719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
.+++|+.||.|=+.+.+.+... --.|.+.|+++.-.+.-+....+.. +.+|..++...+ ..+|+++.++-
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D-~sFD~vt~~fg 128 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG---TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD-NSFDAVTISFG 128 (238)
T ss_pred CEEEEECCCCCHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCC-CCCCEEEEEEH
T ss_conf 8799966873199999999658---8449999799999999998743247663279970565498888-76588986512
No 51
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=92.80 E-value=0.46 Score=25.77 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=46.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-----CCCEEEEEECCCC-CCCEEEEECCC
Q ss_conf 6964107947889999872220895699998069555112220012332-----3211589753657-88719998689
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-----IFGDIAKIKTQDI-PDHDVLLAGFP 75 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-----~~~DI~~~~~~~~-~~~D~l~gG~P 75 (83)
|++||=||.|-+...+.+.. .+. .+.++|++..|.+.-+.|..... +..|+.+ ++ .++|+|+.-||
T Consensus 199 ~VLDlGCG~Gvi~~~la~~~--p~~-~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~~~----~v~~~fD~IvsNPP 270 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLAQHS--PKI-RLTLCDVSAPAVEASRATLAANGLEGEVFASNVFS----EIKGRFDMIISNPP 270 (342)
T ss_pred CEEEECCCHHHHHHHHHHHC--CCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCC----CCCCCCCEEEECCC
T ss_conf 47860678179999999869--997-69999688999999999899809886899756445----65567898996885
No 52
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=92.77 E-value=0.18 Score=27.86 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=34.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC
Q ss_conf 2696410794788999987222089569999806955511222001233
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~ 50 (83)
.+++|.+||.|= .|++.+. +.+...|++||+++.|.+..+.|....
T Consensus 53 ~~ilDalsasGi--R~iRy~~-E~~~~~v~~NDi~~~a~~~i~~N~~~N 98 (376)
T PRK04338 53 KSVLDALSASGI--RGIRYAL-ETGVEKVILNDINPDAVELIKKNLELN 98 (376)
T ss_pred CEEEECCCCCCH--HHHHHHH-HCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 768740676549--9999987-279987999569999999999999982
No 53
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=92.52 E-value=0.11 Score=28.96 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=25.3
Q ss_pred EEEECCCCCHHHHHHHHHH-HCCC-CEEEEEEECCHHHHHHHHH
Q ss_conf 9641079478899998722-2089-5699998069555112220
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTF-NHRN-VECFFSSEINPYSVKTYQA 45 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~-~~~~-~~~v~a~e~d~~a~~~y~~ 45 (83)
.=|||||+|||.+=--++. ++++ =..+--.||++.|+..=++
T Consensus 241 mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~ 284 (386)
T TIGR02085 241 MWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQ 284 (386)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHH
T ss_conf 32010465412789989876415897044313437789999999
No 54
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=92.02 E-value=0.036 Score=31.32 Aligned_cols=43 Identities=35% Similarity=0.535 Sum_probs=36.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC
Q ss_conf 964107947889999872220895699998069555112220012332
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL 51 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~ 51 (83)
.||||||-|-|+++|.. .|+-|-|-||.|..++.=..|.....
T Consensus 207 LLELYCGNGNFsLaLA~-----~f~rVLATEiaK~SV~aAq~Ni~~N~ 249 (361)
T TIGR02143 207 LLELYCGNGNFSLALAQ-----NFERVLATEIAKPSVNAAQYNIAANK 249 (361)
T ss_pred CCEEECCCCCCHHHHHH-----HHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 01000267531044565-----33345543024024799999987179
No 55
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=91.98 E-value=0.38 Score=26.16 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=35.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC
Q ss_conf 2696410794788999987222089569999806955511222001233
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~ 50 (83)
.+++|+=||=|=++.+..++ |.+.+.++|+||.|.++-+.|..-+
T Consensus 164 ~~vlDvGcGSGILaIAa~kL----GA~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKL----GAKKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred CEEEEECCCHHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 87998267815999999981----9866899718889999999999976
No 56
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=91.02 E-value=0.45 Score=25.80 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=44.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-----CCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 269641079478899998722208956999980695551122200123-----32321158975365788719998
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-----~~~~~DI~~~~~~~~~~~D~l~g 72 (83)
+|+||+=||.|-++..|.+. |.+ |..+|..+.+.++-+.+-.. ...++|+.++....-..+|++++
T Consensus 50 ~~ILDVGCGgG~lse~LAr~----Ga~-VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l~~~~~~~FDvV~~ 120 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARL----GAT-VTGIDASEENIEVARLHALESGLKIDYRQITAEELAAEHPGQFDVVTC 120 (233)
T ss_pred CEEEEECCCCCHHHHHHHHC----CCE-EEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCEEEEEE
T ss_conf 98999755897112899967----997-999879989999999985644345116751476654305786347744
No 57
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=90.91 E-value=0.52 Score=25.51 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=42.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC---CCCCEEEEEECCCCCCCEEEEECC
Q ss_conf 6410794788999987222089569999806955511222001233---232115897536578871999868
Q gi|254780516|r 5 TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAKIKTQDIPDHDVLLAGF 74 (83)
Q Consensus 5 ~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~---~~~~DI~~~~~~~~~~~D~l~gG~ 74 (83)
||+=||.|.+..-+.+. .+ ..+.++|+++...+..+.+.+.. .+..|+.++..++ ..+|+++...
T Consensus 1 LDiGcG~G~~~~~l~~~---~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~d~~~~~~~~-~~fD~I~~~~ 68 (95)
T pfam08241 1 LDVGCGTGLLTEALARL---PG-AQVTGVDLSPEMLALARKRAQEDGLTFVVGDAEDLPFPD-ESFDVVVSSL 68 (95)
T ss_pred CCCCCCCCHHHHHHHHC---CC-CEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECC
T ss_conf 96462499999999845---79-999999497899877663102669479980332467554-5685999833
No 58
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=90.87 E-value=0.5 Score=25.59 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=49.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC----CCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 69641079478899998722208956999980695551122200123----323211589753657887199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~----~~~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
+++|.=.|.|.++..|-+.+ +.+.++|+|+.-.+.++..+.. +.+++|+-+++..+.+. ..++|-.|=
T Consensus 16 ~VlEIGPG~G~LT~~Ll~~~-----~~v~aiE~D~~l~~~L~~~~~~~~n~~ii~~D~L~~~~~~~~~-~~iv~NLPY 87 (169)
T smart00650 16 TVLEIGPGKGALTEELLERA-----ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP-YKVVGNLPY 87 (169)
T ss_pred EEEEECCCHHHHHHHHHHHC-----CCCCEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCC-CEEEECCCC
T ss_conf 79996897029999999731-----6353163788999999986410797799957111255311587-369934763
No 59
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=90.82 E-value=0.62 Score=25.11 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=47.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC---C-CCCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 6964107947889999872220895699998069555112220012---3-32321158975365788719998689
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---N-TLIFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~---~-~~~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
+|+|.=.|.|.++..|-+. .+.+.++|+|+...+.++..+. + +.+++|+-+++.....+. .++|--|
T Consensus 33 ~VlEIGPG~G~LT~~L~~~-----~~~v~aiE~D~~l~~~L~~~~~~~~~~~ii~~D~l~~d~~~~~~~-~vvgNLP 103 (258)
T pfam00398 33 TVLEIGPGKGALTEELAKR-----AKQVVAIEIDPRLAKRLQKKLALHPNVEVVHQDFLKFSFPKHEPF-LVVGNIP 103 (258)
T ss_pred EEEEECCCHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCE-EEEECCC
T ss_conf 7999799623999999961-----694799954477999999864428977999663010575457861-6894488
No 60
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.70 E-value=0.44 Score=25.88 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=45.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC------CCC-CEEEEEECCCCCC--CEEEEEC
Q ss_conf 696410794788999987222089569999806955511222001233------232-1158975365788--7199986
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIF-GDIAKIKTQDIPD--HDVLLAG 73 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~------~~~-~DI~~~~~~~~~~--~D~l~gG 73 (83)
+++|=|||.||+-.-... .|.+++. +|+|.....=-+.|+..- ... .|.+++. +++ +|-++.-
T Consensus 200 ~vlDPFcGTGgiLiEagl----~G~~viG-~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~~~vdaIatD 271 (347)
T COG1041 200 LVLDPFCGTGGILIEAGL----MGARVIG-SDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRDNSVDAIATD 271 (347)
T ss_pred EEECCCCCCCHHHHHHHH----CCCEEEE-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---CCCCCCCEEEEC
T ss_conf 764576783488883664----2756760-32379998556641566276761688730221277---887742358846
Q ss_pred CCC
Q ss_conf 899
Q gi|254780516|r 74 FPC 76 (83)
Q Consensus 74 ~PC 76 (83)
||=
T Consensus 272 PPY 274 (347)
T COG1041 272 PPY 274 (347)
T ss_pred CCC
T ss_conf 998
No 61
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=90.69 E-value=0.66 Score=24.95 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=44.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCC-EEEEEE-CCCC-CCCEEEEECCCC
Q ss_conf 6964107947889999872220895699998069555112220012332321-158975-3657-887199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK-TQDI-PDHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~-DI~~~~-~~~~-~~~D~l~gG~PC 76 (83)
+++||=||.|-+.+-+.+.. +-..+..+|++..|.+.=+.|.......+ .|..-+ .+.+ .++|+|+.-||=
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~---p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPf 234 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKS---PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPF 234 (300)
T ss_pred CEEEECCCCCHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 68870788429999999868---987289982669999998876997398763799812446654400689848884
No 62
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=90.54 E-value=0.93 Score=24.23 Aligned_cols=67 Identities=30% Similarity=0.423 Sum_probs=47.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 69641079478899998722208956999980695551122200123-------32321158975365788719998689
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
.|+|.=.|.|.++..|-.. .+.|.++|+|+.....++.++.. +.+.+|+-+++ +|..|.++|--|
T Consensus 41 ~VlEIGPG~G~LT~~Ll~~-----~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d---~~~~~~vVaNLP 112 (296)
T PTZ00338 41 TVLEIGPGTGNLTEKLLQL-----AKKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTE---FPYFDVCVANVP 112 (296)
T ss_pred EEEEECCCCHHHHHHHHHC-----CCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCC---CCCCCEEEECCC
T ss_conf 5799668542999999835-----89179999488999999999851445667357705053185---641144663587
Q ss_pred CC
Q ss_conf 97
Q gi|254780516|r 76 CQ 77 (83)
Q Consensus 76 Cq 77 (83)
=+
T Consensus 113 Y~ 114 (296)
T PTZ00338 113 YQ 114 (296)
T ss_pred CH
T ss_conf 04
No 63
>KOG2730 consensus
Probab=90.16 E-value=0.093 Score=29.25 Aligned_cols=69 Identities=23% Similarity=0.470 Sum_probs=44.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC-----C--CCCCCEEEEEECC-CCC--CCEEEEE
Q ss_conf 6964107947889999872220895699998069555112220012-----3--3232115897536-578--8719998
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----N--TLIFGDIAKIKTQ-DIP--DHDVLLA 72 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~-----~--~~~~~DI~~~~~~-~~~--~~D~l~g 72 (83)
.+++-|+|+||...-+-. .+-.|.+.|+||-..+.-++|-. . +.++||+.++-.. .+. ..|++..
T Consensus 97 ~iidaf~g~gGntiqfa~-----~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730 97 VIVDAFCGVGGNTIQFAL-----QGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred HHHHHHHCCCCHHHHHHH-----HCCEEEEEECCHHHHHHHHCCCEEECCCCEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_conf 002545368842889987-----188079985267888877606503257750588833099999988641010456616
Q ss_pred CCCC
Q ss_conf 6899
Q gi|254780516|r 73 GFPC 76 (83)
Q Consensus 73 G~PC 76 (83)
+||=
T Consensus 172 sppw 175 (263)
T KOG2730 172 SPPW 175 (263)
T ss_pred CCCC
T ss_conf 9999
No 64
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=89.93 E-value=0.44 Score=25.87 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=43.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC------CCCCCEEEEEECCCCCCCEEEEECC
Q ss_conf 269641079478899998722208956999980695551122200123------3232115897536578871999868
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGDIAKIKTQDIPDHDVLLAGF 74 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~------~~~~~DI~~~~~~~~~~~D~l~gG~ 74 (83)
.+++|+.||-|-+...+.+.... .. .+..+|+++.-.+.-+.+..+ +...+|..++..++ ..+|+++.++
T Consensus 49 ~~vLDl~cGTG~~~~~l~~~~~~-~~-~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf~d-~sfD~v~~~f 124 (233)
T pfam01209 49 NKFLDVAGGTGDWTFGLSDSAGS-SG-KVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFED-DSFDIVTISF 124 (233)
T ss_pred CEEEEECCCCCHHHHHHHHHHCC-CC-EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCHHHHHH
T ss_conf 98998254058899999998499-97-49999699999999999998569998369982166688666-5657314210
No 65
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.95 E-value=0.55 Score=25.38 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=32.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC
Q ss_conf 2696410794788999987222089569999806955511222001233
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~ 50 (83)
.+++|-|||-|= .|++.+. ..+...+++||++|.|.++.+.|....
T Consensus 54 ~~v~DalsatGi--RgIRya~-E~~~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 54 KRVLDALSATGI--RGIRYAV-ETGVVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred EEEEECCCCCCH--HHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 388643555336--6754534-257617997158989999999999834
No 66
>KOG1122 consensus
Probab=88.90 E-value=0.75 Score=24.68 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=55.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-----CC-CCCEEEEEECCCCC-CCEEEEECC
Q ss_conf 269641079478899998722208956999980695551122200123-----32-32115897536578-871999868
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TL-IFGDIAKIKTQDIP-DHDVLLAGF 74 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-----~~-~~~DI~~~~~~~~~-~~D~l~gG~ 74 (83)
-|++|+||-.||=..-+...-++. -.|+|+|-+....+.++.|... +. ...|-+++..+.++ .+|-+.---
T Consensus 243 ERIlDmcAAPGGKTt~IAalMkn~--G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLDA 320 (460)
T KOG1122 243 ERILDMCAAPGGKTTHIAALMKNT--GVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLDA 320 (460)
T ss_pred CEECCHHCCCCCHHHHHHHHHCCC--CEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 711212107995077899987277--469961354377999998899748774489736763255333676423145348
Q ss_pred CCCC
Q ss_conf 9975
Q gi|254780516|r 75 PCQP 78 (83)
Q Consensus 75 PCq~ 78 (83)
||-+
T Consensus 321 PCSG 324 (460)
T KOG1122 321 PCSG 324 (460)
T ss_pred CCCC
T ss_conf 7777
No 67
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.84 E-value=1.4 Score=23.34 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=29.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC
Q ss_conf 2696410794788999987222089569999806955511222001
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~ 47 (83)
.||||+=||+||...=|. ++.+++ |...|+.+..++.-+.+-
T Consensus 54 ~kVLDvGCG~GG~a~~LA---~~yg~~-V~GiDls~~~~~~A~er~ 95 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYIN---EKYGAH-THGIDICEKIVNIAKERN 95 (263)
T ss_pred CEEEEECCCCCHHHHHHH---HHCCCE-EEEEECCHHHHHHHHHHC
T ss_conf 868886888788999999---974987-999858899999999855
No 68
>PRK06202 hypothetical protein; Provisional
Probab=88.78 E-value=1.1 Score=23.94 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=47.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCE-EEEEEECCHHHHHHHHHCCCCCCC---CCEEEEEECCCCCCCEEEEECCCCC
Q ss_conf 269641079478899998722208956-999980695551122200123323---2115897536578871999868997
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVE-CFFSSEINPYSVKTYQANFPNTLI---FGDIAKIKTQDIPDHDVLLAGFPCQ 77 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~-~v~a~e~d~~a~~~y~~n~~~~~~---~~DI~~~~~~~~~~~D~l~gG~PCq 77 (83)
++|+|+=||.|.+...+.+.....++. .+..+|+++.+.+.-+.+.+.... +.+...+... -..+|++++.--+-
T Consensus 63 ~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~d~l~~~-~~~~DvV~~sl~LH 141 (233)
T PRK06202 63 LTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVTFRFAVSDELVAE-GERFDVVYSNHFLH 141 (233)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHHCCC-CCCCCEEEHHHHHH
T ss_conf 28998347875799999999975599638999779889999998734036983699734320245-78875760324686
Q ss_pred CC
Q ss_conf 54
Q gi|254780516|r 78 PF 79 (83)
Q Consensus 78 ~f 79 (83)
.|
T Consensus 142 Hf 143 (233)
T PRK06202 142 HL 143 (233)
T ss_pred CC
T ss_conf 49
No 69
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=88.65 E-value=0.13 Score=28.51 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=38.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHCCCCCCC-CCEEEEEECC
Q ss_conf 269641079478899998722208--956999980695551122200123323-2115897536
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHR--NVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQ 62 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~--~~~~v~a~e~d~~a~~~y~~n~~~~~~-~~DI~~~~~~ 62 (83)
|.++|-|||-| -.|++.|.+-. +.+-+++||++|.|.+..+.|....-+ ..++.+.++.
T Consensus 96 i~~~dALSasG--iRaiRya~E~~fngv~~v~~ND~~P~Ave~I~~N~~~N~v~N~~v~n~Da~ 157 (462)
T TIGR00308 96 IEIADALSASG--IRAIRYALEVEFNGVKKVFANDINPKAVESIKNNVKLNSVENIEVINEDAA 157 (462)
T ss_pred HHHHHHHHCCC--HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 89998751040--889999874465761067753477378899884123244227654550379
No 70
>KOG2015 consensus
Probab=87.60 E-value=0.41 Score=26.00 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCH-----------------------HHHHHHHHCCCC---CCCCCEEEEEEC
Q ss_conf 079478899998722208956999980695-----------------------551122200123---323211589753
Q gi|254780516|r 8 FCGIGGIRLDLEQTFNHRNVECFFSSEINP-----------------------YSVKTYQANFPN---TLIFGDIAKIKT 61 (83)
Q Consensus 8 FsG~GG~~~gl~~a~~~~~~~~v~a~e~d~-----------------------~a~~~y~~n~~~---~~~~~DI~~~~~ 61 (83)
-=|+||+..-+-+-+.-.+|+.+-..|.|. -|.+....++|+ +++.++|.+...
T Consensus 45 viGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~ 124 (422)
T KOG2015 45 VIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPI 124 (422)
T ss_pred EECCCCCCHHHHHHHHHHCCCEEEEEEECCEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHCCCH
T ss_conf 98068632799876776245516898503253144102323033116853689999999734887277440021201897
Q ss_pred CCCCCCEEEEECC
Q ss_conf 6578871999868
Q gi|254780516|r 62 QDIPDHDVLLAGF 74 (83)
Q Consensus 62 ~~~~~~D~l~gG~ 74 (83)
+-+.+++++++|-
T Consensus 125 ~FYk~F~~iicGL 137 (422)
T KOG2015 125 SFYKRFDLIICGL 137 (422)
T ss_pred HHHHHHCEEEECC
T ss_conf 8986415677534
No 71
>pfam02086 MethyltransfD12 D12 class N6 adenine-specific DNA methyltransferase.
Probab=87.28 E-value=0.8 Score=24.55 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=28.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH
Q ss_conf 6964107947889999872220895699998069555112220
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~ 45 (83)
+++|.|+|.|...+.++.. .+.++.+|+++.-...|+.
T Consensus 23 ~yvEPF~GggsV~~~~~~~-----~~~~~iNDin~~l~~~~~~ 60 (254)
T pfam02086 23 RFVEPFAGGGAVFFEAKKR-----GKKVLINDINYDLINLYKA 60 (254)
T ss_pred EEEEECCCHHHHHHHHHCC-----CCEEEEEECCHHHHHHHHH
T ss_conf 9998368777999976416-----8869999688899999999
No 72
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=87.24 E-value=1.4 Score=23.41 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=56.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-CCEEEEEECCCCC----C----CEEEEE
Q ss_conf 269641079478899998722208956999980695551122200123323-2115897536578----8----719998
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIP----D----HDVLLA 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-~~DI~~~~~~~~~----~----~D~l~g 72 (83)
.+|+|+.|-.||=+.=+.+..++.| +|.|||+.+.-.+.+.+|..--=. .--|.+.|...+| + +|-+.-
T Consensus 79 ~~vlD~AAaPGgKTT~is~~m~N~G--~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~DgR~f~~~~~~~eifFD~iLL 156 (284)
T TIGR00446 79 ERVLDMAAAPGGKTTQISALMKNEG--AIVANEVSKSRTKVLIANINRMGVLNVAVINVDGRKFGAVVLKMEIFFDRILL 156 (284)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCEEEEEEEEE
T ss_conf 8799974088964899999865885--18997376341066786555621003332413763001231443034321452
Q ss_pred CCCCCCC
Q ss_conf 6899754
Q gi|254780516|r 73 GFPCQPF 79 (83)
Q Consensus 73 G~PCq~f 79 (83)
--||-+-
T Consensus 157 DAPCSG~ 163 (284)
T TIGR00446 157 DAPCSGE 163 (284)
T ss_pred CCCCCCC
T ss_conf 5787988
No 73
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=86.86 E-value=1.5 Score=23.22 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=47.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCC------CEEEEEEECCHHHHHHHHHCCCCCC----------CCCEEEEEECCCCCC
Q ss_conf 696410794788999987222089------5699998069555112220012332----------321158975365788
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRN------VECFFSSEINPYSVKTYQANFPNTL----------IFGDIAKIKTQDIPD 66 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~------~~~v~a~e~d~~a~~~y~~n~~~~~----------~~~DI~~~~~~~~~~ 66 (83)
|+||++||-|=+..-+.+...+.+ ..-|..+|+++.-.++=++.+++.. +.+|-+++..++ ..
T Consensus 46 ~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF~D-~s 124 (242)
T TIGR01934 46 KVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPFED-NS 124 (242)
T ss_pred CEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCCC-CC
T ss_conf 77887238399999998635755533577633789870798899999874134200333216421100055087998-62
Q ss_pred CEEEEECC
Q ss_conf 71999868
Q gi|254780516|r 67 HDVLLAGF 74 (83)
Q Consensus 67 ~D~l~gG~ 74 (83)
+|+++-+|
T Consensus 125 FD~~TiaF 132 (242)
T TIGR01934 125 FDAVTIAF 132 (242)
T ss_pred EEEEEEEC
T ss_conf 44466402
No 74
>KOG2361 consensus
Probab=86.73 E-value=0.78 Score=24.62 Aligned_cols=69 Identities=12% Similarity=0.280 Sum_probs=46.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC--CCCCCCEEEEEECCCCC------CCEEEEE
Q ss_conf 6964107947889999872220895699998069555112220012--33232115897536578------8719998
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQDIP------DHDVLLA 72 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~--~~~~~~DI~~~~~~~~~------~~D~l~g 72 (83)
++++.=||+|-...-+-+...+.++ .++++|+.+.|.+.++.|-. ......++.++...++. .+|+++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l-~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361 74 TILEVGCGVGNTVFPLLKTSPNNRL-KVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred HHEEECCCCCCCCCHHHHCCCCCCE-EEEECCCCHHHHHHHHHCCCCCHHHHCCCCEECCCHHCCCCCCCCCCCEEEE
T ss_conf 5112224777512244424899873-8997489868999987363326455012000165601037888676334789
No 75
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.72 E-value=2.1 Score=22.45 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=44.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEEEEEECCCCCCCEEEEECC
Q ss_conf 269641079478899998722208956999980695551122200123-------3232115897536578871999868
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQDIPDHDVLLAGF 74 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI~~~~~~~~~~~D~l~gG~ 74 (83)
.+++|+-||-|-+...+.+... ....|.+.|+++.-.+.-+.+... ..+.+|..++...+ ..+|+++.++
T Consensus 53 ~~vLDvgcGTG~~~~~l~~~~~--~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d-~sfD~v~~~f 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVG--ETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPD-NSFDAVTIAF 129 (239)
T ss_pred CEEEEECCCCCHHHHHHHHHCC--CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCC
T ss_conf 9898845776387999999729--976799991988999999999997389888507982355688876-6676500261
Q ss_pred CC
Q ss_conf 99
Q gi|254780516|r 75 PC 76 (83)
Q Consensus 75 PC 76 (83)
--
T Consensus 130 ~l 131 (239)
T PRK00216 130 GL 131 (239)
T ss_pred EE
T ss_conf 56
No 76
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=86.16 E-value=1.5 Score=23.21 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=48.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-CCCCCEEEEEECCCCCCCEEEEECCCCC
Q ss_conf 69641079478899998722208956999980695551122200123-3232115897536578871999868997
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDHDVLLAGFPCQ 77 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-~~~~~DI~~~~~~~~~~~D~l~gG~PCq 77 (83)
+++|+=||-|-++..|... + ..+.++|+.+...+.-+.+.+. ....+|+..+...+ ..+|+++.++-=|
T Consensus 45 ~vLDlGcGtG~~t~~l~~~----~-~~v~~~Dls~~Ml~~a~~~~~~~~~~~~D~e~Lp~~~-~sfDli~S~~~lq 114 (251)
T PRK10258 45 HVLDAGCGPGWMSRYWRER----G-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLAT-ATFDLAWSNLAVQ 114 (251)
T ss_pred CEEEEEEHHHHHHHHHHHC----C-CEEEEEECCHHHHHHHHHHCCCHHHHHCHHHHCCCCC-CCCCEEEECCCHH
T ss_conf 3999831002789999974----9-9699995989999999874863343536063099987-8821785504045
No 77
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=86.02 E-value=1.5 Score=23.19 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=49.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-CCCCCEEEEEECCCCCC--CEEEEECCCC
Q ss_conf 69641079478899998722208956999980695551122200123-32321158975365788--7199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPD--HDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-~~~~~DI~~~~~~~~~~--~D~l~gG~PC 76 (83)
+|+|.=.|.|.++..|-+.+ ..+.++|+|+...+.++.. ++ +.+++|+-+++..++.+ ...++|--|=
T Consensus 42 ~VlEIGpG~G~LT~~Ll~~~-----~~v~aiEiD~~l~~~L~~~-~~~~ii~~D~L~~~~~~~~~~~~~~vvgNLPY 112 (267)
T PRK00274 42 RVLEIGPGLGALTEPLLERA-----AKVTAIEIDRDLAPILRET-DNLTIIEGDALKVDLEELAEGQPLKVVANLPY 112 (267)
T ss_pred EEEEECCCCCHHHHHHHHHC-----CCEEEEECCHHHHHHHHHC-CCEEEEECHHHHCCHHHHCCCCCEEEEECCCC
T ss_conf 07996388888999999626-----8058863688999998504-78699965066478677456787279955883
No 78
>KOG2198 consensus
Probab=85.11 E-value=2.9 Score=21.77 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=48.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCE--EEEEEECCHHHHHHHHHCCCCCCC------CCEEEEEE--------CCCCCC
Q ss_conf 69641079478899998722208956--999980695551122200123323------21158975--------365788
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLI------FGDIAKIK--------TQDIPD 66 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~--~v~a~e~d~~a~~~y~~n~~~~~~------~~DI~~~~--------~~~~~~ 66 (83)
+|+|||+-.||=+..+-++.. ...+ .|.+||.|+.....+.+-....+. ..|+.... ..++-.
T Consensus 158 ~VLDmCAAPG~Kt~qLLeal~-~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~ 236 (375)
T KOG2198 158 KVLDMCAAPGGKTAQLLEALH-KDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLK 236 (375)
T ss_pred EEEEECCCCCCCHHHHHHHHH-CCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCHHHHHH
T ss_conf 444201389844899999972-3777773675345788999999998526984333431211005641014676033441
Q ss_pred CEEEEECCCCCCC
Q ss_conf 7199986899754
Q gi|254780516|r 67 HDVLLAGFPCQPF 79 (83)
Q Consensus 67 ~D~l~gG~PCq~f 79 (83)
+|=+..--||..=
T Consensus 237 fDrVLvDVPCS~D 249 (375)
T KOG2198 237 FDRVLVDVPCSGD 249 (375)
T ss_pred CCEEEEECCCCCC
T ss_conf 2536871456898
No 79
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=84.84 E-value=3.2 Score=21.52 Aligned_cols=68 Identities=21% Similarity=0.354 Sum_probs=50.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEE-EEEEECCHHHHHHHHHCCC--C----CCCCCEEEEEECC---CCCCCE--EE
Q ss_conf 696410794788999987222089569-9998069555112220012--3----3232115897536---578871--99
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFP--N----TLIFGDIAKIKTQ---DIPDHD--VL 70 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~-v~a~e~d~~a~~~y~~n~~--~----~~~~~DI~~~~~~---~~~~~D--~l 70 (83)
+|+|.=.|+|.++..|-.- ... |.++|+|+..++.++.... . +.+.+|+-+++.. ++++.+ .+
T Consensus 32 ~vlEIGPG~G~LT~~Ll~~-----~~~~v~aiEiD~~l~~~L~~~~~~~~~~~~~~i~~Dalk~~~~~~~~~~~~~~~~v 106 (277)
T TIGR00755 32 VVLEIGPGLGALTEPLLKR-----AKKLVTAIEIDPRLAEILRKLLSEKLYENLEVIEGDALKVDLNSLEDFPKEDKLKV 106 (277)
T ss_pred EEEEECCCCHHHHHHHHHH-----CCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCEEEECCCHHHHCCCCCCCEE
T ss_conf 7999738820789999982-----59848999726789999875215433242578714445412320433167898579
Q ss_pred EECCC
Q ss_conf 98689
Q gi|254780516|r 71 LAGFP 75 (83)
Q Consensus 71 ~gG~P 75 (83)
+|=-|
T Consensus 107 v~NLP 111 (277)
T TIGR00755 107 VSNLP 111 (277)
T ss_pred EEECC
T ss_conf 85077
No 80
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=83.75 E-value=3.6 Score=21.27 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=49.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-CCCEEEEEECCCCCCCEEEEEC
Q ss_conf 26964107947889999872220895699998069555112220012332-3211589753657887199986
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDIPDHDVLLAG 73 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-~~~DI~~~~~~~~~~~D~l~gG 73 (83)
-+|+||=||-|-+...|..... + -.|..+|.++...+.-+.+.|+.. ..+|+.++... ..+|+|+..
T Consensus 33 ~~vlDlGCG~G~~t~~l~~r~p--~-a~v~GiD~S~~Ml~~Ar~~~~~~~f~~~D~~~~~~~--~~~D~ifSN 100 (252)
T PRK01683 33 EYVADLGCGPGNSTALLHQRWP--A-ARITGIDSSPAMLAEARQALPDCQFVEADIRNWQPE--QALDLIYAN 100 (252)
T ss_pred CEEEEECCCCCHHHHHHHHHCC--C-CEEEEEECCHHHHHHHHHHCCCCEEEECCHHCCCCC--CCCCEEEEE
T ss_conf 9899937749899999999779--9-879999898999999997589983872504207876--787889561
No 81
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=82.98 E-value=1.7 Score=22.85 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=34.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCC
Q ss_conf 2696410794788999987222089569999806955511222001233232
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~ 53 (83)
+|++|.=||.|-++..+.+. | ..|.++|..+.+.++-+.+.......
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~----G-a~VtgiD~se~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARL----G-ASVTGIDASEKPIEVAKLHALESGVN 107 (243)
T ss_pred CEEEEECCCCCHHHHHHHHC----C-CEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 70887458832864999977----9-94697438767789998754424632
No 82
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=82.83 E-value=1.2 Score=23.71 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=42.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC-CCCCEEEEEECCC-----C-CCCEEEE--E
Q ss_conf 2696410794788999987222089569999806955511222001233-2321158975365-----7-8871999--8
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD-----I-PDHDVLL--A 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~-~~~~DI~~~~~~~-----~-~~~D~l~--g 72 (83)
.+++||.++.||+...+.+.+ .-..|.++|..+.. ..+.+ .+.+||++....+ + .++|+++ +
T Consensus 23 ~~vlDLg~aPGgwsq~~~~~~---~~~~v~~vDl~~~~------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~DlV~sD~ 93 (176)
T pfam01728 23 KTVLDLGAAPGGFSQVLLERG---AKGRVVAVDLGPMK------PIQGVTFLRGDITDPETLEKLLELLPGKVDLVLCDG 93 (176)
T ss_pred CEEEEECCCCCHHHHHHHHHC---CCCEEEEEECCCCC------CCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEECC
T ss_conf 999996899976999999856---68739999734465------677845651676687899999997399846897336
Q ss_pred CCCCCCCC
Q ss_conf 68997543
Q gi|254780516|r 73 GFPCQPFS 80 (83)
Q Consensus 73 G~PCq~fS 80 (83)
+|++++..
T Consensus 94 a~~~~g~~ 101 (176)
T pfam01728 94 APNVSGLE 101 (176)
T ss_pred CCCCCCCC
T ss_conf 65656773
No 83
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=82.61 E-value=2.6 Score=21.96 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=57.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-CCEEEEEE----CCCCCCCEEEEECCCC
Q ss_conf 269641079478899998722208956999980695551122200123323-21158975----3657887199986899
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK----TQDIPDHDVLLAGFPC 76 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-~~DI~~~~----~~~~~~~D~l~gG~PC 76 (83)
+.|+||=.|-|-+..++-.-+ ..=+.+.+.|++++-...+...||.+.+ .+|..++. ....+.+|.++.|-|-
T Consensus 50 lpVlElGPGTGV~TkaIL~~g--v~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRG--VRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred CEEEEECCCCCHHHHHHHHCC--CCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 764777698667689999657--995436899827799999997588751305405657877865279740168865600
Q ss_pred CCCCC
Q ss_conf 75436
Q gi|254780516|r 77 QPFSQ 81 (83)
Q Consensus 77 q~fS~ 81 (83)
-.|+.
T Consensus 128 l~~P~ 132 (194)
T COG3963 128 LNFPM 132 (194)
T ss_pred CCCCH
T ss_conf 24867
No 84
>PRK05785 hypothetical protein; Provisional
Probab=82.41 E-value=2.3 Score=22.25 Aligned_cols=65 Identities=15% Similarity=0.334 Sum_probs=36.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 26964107947889999872220895699998069555112220012332321158975365788719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
.|+||+.+|-|-+...+.+. ..+..+|+.+.-.+.-+. ....+.+|..++..++ ..+|.++.+|=
T Consensus 53 ~~vLDva~GTGd~a~~l~~~------~~v~~~D~s~~ML~~a~~--~~~~v~~~ae~LPf~d-~sFD~vt~~Fg 117 (225)
T PRK05785 53 LKVLDAGAGPGNMAYHLRKI------RYVVALDYTEEMLRLNLV--ADDKVVGSFEAMPFRD-KSFDLVMSGYA 117 (225)
T ss_pred CEEEEECCCCHHHHHHHHCC------CEEEEEECCHHHHHHHHH--CCCCEEEHHHHCCCCC-CCEEEEEEEEE
T ss_conf 82899568843999996347------869999889999998764--3211373185399998-82527763443
No 85
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=82.00 E-value=3.6 Score=21.26 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=40.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-------CCEEEEEECCCC-CCCEE-EEEC
Q ss_conf 69641079478899998722208956999980695551122200123323-------211589753657-88719-9986
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-------FGDIAKIKTQDI-PDHDV-LLAG 73 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-------~~DI~~~~~~~~-~~~D~-l~gG 73 (83)
++.|+=+|.|..++ +.+..-..-..|+++|.++.+.+..+.|....-. .+|.-+.- .++ |+.|. ++||
T Consensus 43 ~vwDIGaGsGsvsi--Eaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l-~~l~p~pD~vFIGG 119 (198)
T PRK00377 43 KLVDVGCGTGSVSV--EAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVL-PKLNPKSDRYFIGG 119 (198)
T ss_pred EEEEECCCEEHHHH--HHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH-HCCCCCCCEEEEEC
T ss_conf 99991770329999--9999669787599996788899999999998099988599952548877-20899889899978
Q ss_pred C
Q ss_conf 8
Q gi|254780516|r 74 F 74 (83)
Q Consensus 74 ~ 74 (83)
.
T Consensus 120 ~ 120 (198)
T PRK00377 120 G 120 (198)
T ss_pred C
T ss_conf 8
No 86
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=81.79 E-value=3.1 Score=21.60 Aligned_cols=65 Identities=20% Similarity=0.376 Sum_probs=40.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 69641079478899998722208956999980695551122200123-------32321158975365788719998
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI~~~~~~~~~~~D~l~g 72 (83)
||+|+=||.|+...-+.+.. ...+ +..+|+++...+.-+.+... ....+|..+....+ .+|++++
T Consensus 2 rVLDiGCG~G~~~~~LA~~~--p~~~-v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d--~FD~V~s 73 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH--PHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD--TYDLVFG 73 (224)
T ss_pred EEEEEECCCCHHHHHHHHHC--CCCE-EEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC--CCCEEEH
T ss_conf 08998366888899999977--9988-99997999999999999997299865147852110399999--8356768
No 87
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=81.50 E-value=4.5 Score=20.80 Aligned_cols=64 Identities=27% Similarity=0.315 Sum_probs=46.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-CCEEEEEECCCCCCCEEEE
Q ss_conf 69641079478899998722208956999980695551122200123323-2115897536578871999
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPDHDVLL 71 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-~~DI~~~~~~~~~~~D~l~ 71 (83)
.++|+=|.+|---.+|+.+.. -....++||++.|++..+..+|...+ .++|-+. ..-..+|+++
T Consensus 46 SilE~GcNIGlNL~ALk~L~P---~~~l~gIEIN~~A~~~lk~~~~~~~i~n~SIld~--~~~~~~DLv~ 110 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLP---FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP--FKDNFFDLVL 110 (204)
T ss_pred EEEEECCCCCHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCEEEEE
T ss_conf 268966884776999987487---4404999539999999986589726996533466--7787423899
No 88
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=80.95 E-value=0.73 Score=24.74 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=52.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC----------CCCCCCEEEEEECCCCCC--CEE
Q ss_conf 26964107947889999872220895699998069555112220012----------332321158975365788--719
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----------NTLIFGDIAKIKTQDIPD--HDV 69 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~----------~~~~~~DI~~~~~~~~~~--~D~ 69 (83)
.+|+|+=||-|=++..+.+.. ....+.++|+.+.-....+.+.+ ...+.+||.++...+ +. +|+
T Consensus 38 ~~vLd~GcGTG~~t~~l~~~~---~~~~~~a~D~~~~ml~~a~~~~~~GWW~~~~~~~~f~~gD~E~l~~~~-~~~~~DL 113 (272)
T TIGR02072 38 ASVLDIGCGTGYLTRALLKRF---PQAELIALDISEEMLAQAKEKLSEGWWQKNLKAVQFICGDIEKLPLED-SSFKFDL 113 (272)
T ss_pred CCEEEECCCCHHHHHHHHHHC---CCCEEHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCEEEH
T ss_conf 435651268548999999868---800123333256789999974467886576045666663777178876-6303412
Q ss_pred EEEC
Q ss_conf 9986
Q gi|254780516|r 70 LLAG 73 (83)
Q Consensus 70 l~gG 73 (83)
|+..
T Consensus 114 I~Sn 117 (272)
T TIGR02072 114 IVSN 117 (272)
T ss_pred HHHH
T ss_conf 7563
No 89
>PRK08317 hypothetical protein; Provisional
Probab=80.03 E-value=5 Score=20.54 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=43.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC----CC-CCCCCEEEEEECCCCCCCEEEEEC
Q ss_conf 2696410794788999987222089569999806955511222001----23-323211589753657887199986
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PN-TLIFGDIAKIKTQDIPDHDVLLAG 73 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~----~~-~~~~~DI~~~~~~~~~~~D~l~gG 73 (83)
.||+|+=||.|.+...|.+... .+ -.|..+|+++...+.-+.+. ++ ..+.+|+.++...+ ..+|++++.
T Consensus 21 ~~vLDiGcG~G~~~~~la~~~g-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~lp~~d-~sfD~v~~~ 94 (241)
T PRK08317 21 ERVLDVGCGPGNDLRELADRVG-PE-GRVVGIDRSEAMLALARERAAGLLSNVEFVRGDADGLPFPD-ESFDAVRSD 94 (241)
T ss_pred CEEEEECCCCCHHHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCEEEHH
T ss_conf 9999966417499999999749-99-78999969889999999998622896499955464358988-870456221
No 90
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.46 E-value=3.1 Score=21.59 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 07947889999872220895699998069555112220012332321158975365788719998689
Q gi|254780516|r 8 FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 8 FsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
--|.||...+.-.++...+.+.+.....++...+.+...+.......+..++ .+...+.|+++-..|
T Consensus 127 IlGaGGaarai~~al~~~g~~~i~i~nR~~~~a~~l~~~~~~~~~~~~~~~~-~~~~~~~diiInaTp 193 (275)
T PRK00258 127 LLGAGGAARAVILPLLELGVAEITIVNRTVERAEELAELFGEGVQALGLDEL-AGELADFDLIINTTS 193 (275)
T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEHHHH-HHCCCCCCEEEECCC
T ss_conf 9888710799999999769998999958999999999983567627537875-430445777996577
No 91
>PRK11036 putative metallothionein SmtA; Provisional
Probab=78.01 E-value=2.8 Score=21.83 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=44.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCC-------CEEEEEECCCCCCCEEEEE
Q ss_conf 2696410794788999987222089569999806955511222001233232-------1158975365788719998
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------GDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~-------~DI~~~~~~~~~~~D~l~g 72 (83)
+||+|.=+|-|.++..|-++ |.+ |..+|.++...+.-+.+..+.-.- +++.++....-..+|++++
T Consensus 46 lrVLDvG~G~G~~a~~lA~~----Gh~-Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVlc 118 (256)
T PRK11036 46 LRVLDAGGGEGQTAIKMAEL----GHQ-VTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (256)
T ss_pred CEEEEECCCCCHHHHHHHHC----CCE-EEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEE
T ss_conf 83998379877989999977----997-99866999999999999886496612798856899885423688667865
No 92
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=77.57 E-value=5.2 Score=20.45 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=32.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC
Q ss_conf 269641079478899998722208956999980695551122200123
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN 49 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~ 49 (83)
.||+|.=||.|.+++.|-+. |.+ |.++|+.+...+.-+.+.+.
T Consensus 65 ~rVLDaGCGtG~la~~LA~~----Ga~-V~avDiS~~mi~~A~~Ra~~ 107 (230)
T PRK07580 65 LSILDAGCGTGSLSIPLARR----GAK-VVASDISPQMVEEARERAPE 107 (230)
T ss_pred CEEEECCCCCCHHHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHH
T ss_conf 98988187867879999977----998-99983899999999975586
No 93
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=77.13 E-value=6.3 Score=20.07 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=39.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC------CCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 69641079478899998722208956999980695551122200123------32321158975365788719998
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~------~~~~~DI~~~~~~~~~~~D~l~g 72 (83)
|++||=||-|..++-|... |++ |.++|+++.+.+..+.--.. .....|+.+...+ .+.|+|+.
T Consensus 33 ~~LDlgcG~Grna~~La~~----G~~-VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~~~~--~~yDlIls 101 (198)
T PRK11207 33 RTLDLGCGNGRNSLYLAAN----GYD-VTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNLTFD--GEYDFILS 101 (198)
T ss_pred CEEEECCCCCHHHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC--CCCCEEEE
T ss_conf 4777247887869999868----985-999979999999999999875998246562031238877--77058978
No 94
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=76.35 E-value=1.4 Score=23.27 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC----------CCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 9999872220895699998069555112220012332----------321158975365788719998689
Q gi|254780516|r 15 RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL----------IFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 15 ~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~----------~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
...++...++..++.|..+|+|+...++-+..+|... +.+|-.++-.+.-.+.|+++.-+|
T Consensus 87 G~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvII~D~~ 157 (240)
T pfam01564 87 GGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVIIVDST 157 (240)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECC
T ss_conf 79999985679953899975788999999998798524347985599981689999857254458999589
No 95
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=75.84 E-value=6.6 Score=19.95 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=42.9
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 1079478899998722208956999980695551122200123323211589753657887199986899
Q gi|254780516|r 7 LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 7 LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
|-=|.||...+.-.++.+.+.+.+.....++...+-+...+.......+..+. .+...++|+++-..|-
T Consensus 23 lIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~-~~~~~~~dliIN~tp~ 91 (155)
T cd01065 23 LILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDL-EELLAEADLIINTTPV 91 (155)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCH-HHHHCCCCEEEECCCC
T ss_conf 99867589999999999719982288608999999999985013664010453-4431568879876778
No 96
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=74.46 E-value=7.4 Score=19.68 Aligned_cols=54 Identities=24% Similarity=0.198 Sum_probs=35.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-----CCCCCEEEEEEC
Q ss_conf 69641079478899998722208956999980695551122200123-----323211589753
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKIKT 61 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-----~~~~~DI~~~~~ 61 (83)
|++||=||-|--++=|.+. |++ |-|+|+++.+.+..+..... ....-||.+.+.
T Consensus 33 k~LDlgcG~GRNslyLa~~----G~~-VtavD~n~~aL~~l~~ia~~e~l~i~~~~~Din~~~~ 91 (192)
T pfam03848 33 KALDLGCGQGRNSLFLSLL----GYD-VTAVDHNENSIANLQDIKEKENLDIPTALYDINSASI 91 (192)
T ss_pred CEEEECCCCCHHHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 4666047897318999868----991-7999799999999999999709975268731555687
No 97
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=74.43 E-value=6.8 Score=19.88 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=42.5
Q ss_pred EEEEECCCCCHHHHHHHHHHH----CCCCEEEEEEECCHHHHHHHHHCC-----CC-C--CCCCEEE-EEECCCCCCCEE
Q ss_conf 696410794788999987222----089569999806955511222001-----23-3--2321158-975365788719
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFN----HRNVECFFSSEINPYSVKTYQANF-----PN-T--LIFGDIA-KIKTQDIPDHDV 69 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~----~~~~~~v~a~e~d~~a~~~y~~n~-----~~-~--~~~~DI~-~~~~~~~~~~D~ 69 (83)
+|.|-+||-|||=....+... +..-..++-.|+++...+.-+.|. +. . ..++|-- +-......++|+
T Consensus 49 ~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~~~~i~~gdsl~~~~~~~~~kfD~ 128 (312)
T pfam02384 49 SIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYNDFGIRHGDTLLSPKFEEDKKFDV 128 (312)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 88216877337899999999984378556556368899899999999999847988745521477655767665455118
Q ss_pred EEECCC
Q ss_conf 998689
Q gi|254780516|r 70 LLAGFP 75 (83)
Q Consensus 70 l~gG~P 75 (83)
++.-||
T Consensus 129 IlsNPP 134 (312)
T pfam02384 129 VVANPP 134 (312)
T ss_pred EEECCC
T ss_conf 983786
No 98
>KOG2078 consensus
Probab=73.23 E-value=1.5 Score=23.13 Aligned_cols=43 Identities=26% Similarity=0.470 Sum_probs=33.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC
Q ss_conf 964107947889999872220895699998069555112220012332
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL 51 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~ 51 (83)
+-|+|||+|-+.+-+..- + -.|+++|.++.+.+.++.|.+-..
T Consensus 253 v~D~FaGvGPfa~Pa~kK----~-crV~aNDLNpesik~Lk~ni~lNk 295 (495)
T KOG2078 253 VCDVFAGVGPFALPAAKK----G-CRVYANDLNPESIKWLKANIKLNK 295 (495)
T ss_pred HHHHHCCCCCCCCCHHHC----C-CEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 344404767433502225----8-589934799789999997565366
No 99
>PRK11524 putative methyltransferase; Provisional
Probab=71.79 E-value=6.2 Score=20.08 Aligned_cols=45 Identities=16% Similarity=-0.012 Sum_probs=31.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC
Q ss_conf 69641079478899998722208956999980695551122200123323
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI 52 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~ 52 (83)
.|+|-|+|-|.-..+.++.+ -+.+ .+|+++.-++.-+.+...+..
T Consensus 211 lVLDPF~GSGTT~~aA~~lg----R~~I-GiEi~~eY~~iA~~Ri~~~~~ 255 (284)
T PRK11524 211 IVLDPFAGSFTTGAVAKASG----RKFI-GIEINEEYIKMGLRRLDVASH 255 (284)
T ss_pred EEEECCCCCCHHHHHHHHCC----CCEE-EEECCHHHHHHHHHHHHHCCC
T ss_conf 89957988868999999829----9589-996899999999999873534
No 100
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=71.51 E-value=5.7 Score=20.25 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCC--EEEEEECCCCCCCEEEEECCC
Q ss_conf 7947889999872220895699998069555112220012332321--158975365788719998689
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~--DI~~~~~~~~~~~D~l~gG~P 75 (83)
+|..|..+ ++.+..+..++.+...-.++.+-+.+..-+|...... .+.+++...+.++|+++-.-|
T Consensus 8 tGyvG~eL-irlL~~hp~~~i~~l~~s~~saG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 75 (121)
T pfam01118 8 TGYVGQEL-LRLLAEHPPLELVALVASSRSAGKKVAFAGPWLTGGVDLLLEDVDPEDLKDVDIVFFALP 75 (121)
T ss_pred CHHHHHHH-HHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCEEEECCC
T ss_conf 61999999-999971887551378850565896014416542466664477589778538989998387
No 101
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=70.80 E-value=4.3 Score=20.89 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEEC-CHHHHHHHHHC--CC---CCCCCCEEEEEEC---------CCCCCCEEEE
Q ss_conf 794788999987222089569999806-95551122200--12---3323211589753---------6578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEI-NPYSVKTYQAN--FP---NTLIFGDIAKIKT---------QDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~-d~~a~~~y~~n--~~---~~~~~~DI~~~~~---------~~~~~~D~l~ 71 (83)
-|.||.-.+.-..+.+-|++++.-+-= +..+.+-+... +. -....+||.+++. .++.++|+|+
T Consensus 7 Gg~GGIGtAIC~rL~~dG~~V~An~~p~N~~~a~~W~~~~~~~g~~~~~~~~DV~~~e~c~~~v~~v~a~lGpvDvLV 84 (244)
T TIGR01829 7 GGTGGIGTAICTRLAKDGYRVAANYVPSNEERAEAWLQEQGAQGFDFAVVEGDVSSFEDCKAAVAKVEAELGPVDVLV 84 (244)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 787744689999998759889881789825899999986269851478987276777899999999997119536898
No 102
>PRK03612 spermidine synthase; Provisional
Probab=70.63 E-value=2.8 Score=21.85 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHC--C----------CCC-CCCCEEEEEECCCCCCCEEEEECCCCC
Q ss_conf 78899998722208956999980695551122200--1----------233-232115897536578871999868997
Q gi|254780516|r 12 GGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--F----------PNT-LIFGDIAKIKTQDIPDHDVLLAGFPCQ 77 (83)
Q Consensus 12 GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n--~----------~~~-~~~~DI~~~~~~~~~~~D~l~gG~PCq 77 (83)
||-..+++...++.+++.|..+|+|+.-.+.-+.+ + |.. .+.+|-.+.-.+.-.+.|+|+.-+|=.
T Consensus 302 GGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~~~~yDvIi~D~pdP 380 (516)
T PRK03612 302 GGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLPETFDAIIVDLPDP 380 (516)
T ss_pred CCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 7760879998648996637899518899999985721444412323499648985378999986888788899818997
No 103
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=70.45 E-value=7.4 Score=19.71 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=16.5
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHH
Q ss_conf 964107947889999872220895699998069555112
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT 42 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~ 42 (83)
|+|.|+|-|....+.++++ -+ ...+|+++...++
T Consensus 185 VlDpF~GSGTT~~Aa~~l~----R~-~iG~E~~~~y~~~ 218 (221)
T pfam01555 185 VLDPFAGSGTTGAAAKELG----RN-FIGIEIEEEYVEI 218 (221)
T ss_pred EEECCCCCHHHHHHHHHHC----CE-EEEEECCHHHHHH
T ss_conf 9989998279999999829----95-9999589999999
No 104
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=70.40 E-value=2.9 Score=21.75 Aligned_cols=71 Identities=17% Similarity=0.333 Sum_probs=41.7
Q ss_pred CCEEEEECC----------CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC----C-CCCCCEEEEEE-----
Q ss_conf 926964107----------947889999872220895699998069555112220012----3-32321158975-----
Q gi|254780516|r 1 MLKITDLFC----------GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----N-TLIFGDIAKIK----- 60 (83)
Q Consensus 1 ml~v~~LFs----------G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~----~-~~~~~DI~~~~----- 60 (83)
||++.+||+ |.+|+..+.-+.+-+.|.+++. ++.++...+..+.... + ..+..|+++..
T Consensus 1 mm~i~~lf~L~gKvalVTG~s~GIG~aia~~la~~Ga~V~i-~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~ 79 (259)
T PRK08213 1 MMTVLELFDLTGKTALVTGGSRGLGLQIAEALGEAGARVVL-SARKAEELEEAAAHLEALGIDALWLAADVADEADIERL 79 (259)
T ss_pred CCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 97767873999998999487768999999999986999999-97988999999999995499589998268999999999
Q ss_pred ----CCCCCCCEEEEE
Q ss_conf ----365788719998
Q gi|254780516|r 61 ----TQDIPDHDVLLA 72 (83)
Q Consensus 61 ----~~~~~~~D~l~g 72 (83)
.+++..+|+|+-
T Consensus 80 v~~~~~~~G~iDiLVN 95 (259)
T PRK08213 80 AEETLERFGHIDILVN 95 (259)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999998399989998
No 105
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.85 E-value=6.2 Score=20.08 Aligned_cols=68 Identities=18% Similarity=0.358 Sum_probs=38.0
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCHH-----------------------HHHHHHHCCCC---CCCCCEEEEEE
Q ss_conf 10794788999987222089569999806955-----------------------51122200123---32321158975
Q gi|254780516|r 7 LFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----------------------SVKTYQANFPN---TLIFGDIAKIK 60 (83)
Q Consensus 7 LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~-----------------------a~~~y~~n~~~---~~~~~DI~~~~ 60 (83)
|.-|+||+..-+-+.+-..|+..+..+|.|.- |.+..+...|. +.+.++|.+.+
T Consensus 3 lvvG~GglG~e~~k~la~~Gvg~i~ivD~d~i~~sNL~rQflf~~~dvG~~Ka~~a~~~i~~~np~v~v~~~~~~i~~~~ 82 (291)
T cd01488 3 LVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDKD 82 (291)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCC
T ss_conf 99928888999999999848985999739934413565674676553687899999999998789978998505310078
Q ss_pred CCCCCCCEEEEECC
Q ss_conf 36578871999868
Q gi|254780516|r 61 TQDIPDHDVLLAGF 74 (83)
Q Consensus 61 ~~~~~~~D~l~gG~ 74 (83)
.+-+.++|+++.+.
T Consensus 83 ~~f~~~fdvVi~~l 96 (291)
T cd01488 83 EEFYRQFNIIICGL 96 (291)
T ss_pred HHHHHHCCEEEECC
T ss_conf 98995199999887
No 106
>TIGR00571 dam DNA adenine methylase; InterPro: IPR012326 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes . N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognize a specific sequence in DNA and methylate an adenine in that sequence. It has been shown , , , that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A . The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements . According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=69.78 E-value=4 Score=21.06 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=32.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC
Q ss_conf 2696410794788999987222089569999806955511222001
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~ 47 (83)
.+.+|.|.|.|...+-+..- ...++.+..+|++++-+.+|+.--
T Consensus 32 ~~~vEPFvGgGAv~~~~~~~--~~~lk~~~l~DiN~dLi~~Y~~~k 75 (327)
T TIGR00571 32 KCLVEPFVGGGAVFFNLNPK--REELKDVLLSDINEDLINLYKAIK 75 (327)
T ss_pred CEEECCCCCHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 04534764177887664268--711340145328877999999982
No 107
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=69.67 E-value=9.8 Score=19.09 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=38.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC--------CCEEEEEECCCCCCCEEEEE
Q ss_conf 269641079478899998722208956999980695551122200123323--------21158975365788719998
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------FGDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~--------~~DI~~~~~~~~~~~D~l~g 72 (83)
.||+|-=||.|=++.-|-.- |+ .|.|+||.+.-.+.=+...+.... .+|+..+.. +++|.+++
T Consensus 56 ~~vlDAGCGtGllsi~LAk~----GA-~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~~~---G~fD~VV~ 126 (224)
T TIGR02021 56 KKVLDAGCGTGLLSIELAKR----GA-IVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESLEL---GKFDAVVA 126 (224)
T ss_pred CEEEECCCCCCHHHHHHHHC----CC-EEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCC---CCCCEEEE
T ss_conf 77775588931544988847----98-68662376899999986210021016700354530444138---98555675
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=69.19 E-value=10 Score=19.04 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=38.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEC------CCC-CCCEE-EEEC
Q ss_conf 69641079478899998722208956999980695551122200123323211589753------657-88719-9986
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT------QDI-PDHDV-LLAG 73 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~------~~~-~~~D~-l~gG 73 (83)
.+.|+=||-|. .+++.|... .--.|+|+|.++.+.+..+.|....-. .+|+-+.. .++ |..|. ++||
T Consensus 43 ~vwDIGaGtGs--VsiEaa~~~-~~g~V~AIE~~~~a~~li~~N~~rfgv-~nv~ii~g~ape~L~~l~p~pD~vFIGG 117 (196)
T PRK07402 43 VLWDIGAGTGT--IPVEAALLC-PKGRVIAIERDEEVANLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRICIEG 117 (196)
T ss_pred EEEEECCCCCH--HHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHCCCCCCEEEECC
T ss_conf 99994788779--999999878-998899997688899999998997299-9879997263666840899999999848
No 109
>PRK00536 speE spermidine synthase; Provisional
Probab=69.04 E-value=2.6 Score=21.99 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=33.5
Q ss_pred CHHHHH-HHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCCCCCEEEEE
Q ss_conf 788999-9872220895699998069555112220012332------321158975365788719998
Q gi|254780516|r 12 GGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 12 GG~~~g-l~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~~~~D~l~g 72 (83)
||.+-| ++...++. - .+..+|||+...++-+..+|... ...++.++......+.|+|+.
T Consensus 80 GGGDGG~~REvlKH~-~-~v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~~~~~~~~~~~~~fDvIIv 145 (262)
T PRK00536 80 DGFDLELAHQLFKYD-T-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCHHHHHHHHCCC-C-EEEEEEECHHHHHHHHHHCHHHHHHHCCCCEEHHHHHHHHCCCCCCEEEE
T ss_conf 687559999987289-7-66999967899999999785656541399611399987615476688998
No 110
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=67.76 E-value=11 Score=18.88 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=41.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC-----CCCC-CCCEEEEEECCCCCCCEEEEE
Q ss_conf 2696410794788999987222089569999806955511222001-----2332-321158975365788719998
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTL-IFGDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~-----~~~~-~~~DI~~~~~~~~~~~D~l~g 72 (83)
-+||||=||.|-..+-+.+.-... -.|..+|+.+...+.-+.|. .++. ..+||+++...+ ..+|+++.
T Consensus 75 e~VLDLGcG~G~d~~~aA~~VG~~--G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl~D-~SfDvViS 148 (258)
T PRK11873 75 ETVLDLGSGAGFDCFLAARRVGPT--GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD-GSVDVIIS 148 (258)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC--CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCEEEEEE
T ss_conf 989994788777599999986999--779998599999999999999759975599995553136898-83519988
No 111
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=67.74 E-value=6.8 Score=19.90 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=51.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCC-------CEEEEEECC-CCCCCEEEEEC
Q ss_conf 2696410794788999987222089569999806955511222001233232-------115897536-57887199986
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------GDIAKIKTQ-DIPDHDVLLAG 73 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~-------~DI~~~~~~-~~~~~D~l~gG 73 (83)
.+++|++.|-|...+++......- -..+.++|+.+.+.++.+.|....... .++.+--.. ..|+.|+++..
T Consensus 128 ~~~~d~~~g~g~~~~~~~~~~~pc-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 206 (311)
T TIGR00536 128 LHILDLGTGSGCIALALAYEFPPC-NAEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGLGGPKLDLLVSN 206 (311)
T ss_pred CHHHHCCCCCHHHHHHHHHCCCCC-CCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCEEEEECC
T ss_conf 011101456315666554304666-6226641122367888887677643201200101124443320366522366458
Q ss_pred CCCCC
Q ss_conf 89975
Q gi|254780516|r 74 FPCQP 78 (83)
Q Consensus 74 ~PCq~ 78 (83)
||--+
T Consensus 207 ppy~~ 211 (311)
T TIGR00536 207 PPYID 211 (311)
T ss_pred CCCCC
T ss_conf 86544
No 112
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=66.56 E-value=7.9 Score=19.57 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=33.9
Q ss_pred EEEEEECCHHHHHHHHHCCCCCC-------CCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 99998069555112220012332-------3211589753657887199986899
Q gi|254780516|r 29 CFFSSEINPYSVKTYQANFPNTL-------IFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 29 ~v~a~e~d~~a~~~y~~n~~~~~-------~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
.++.+|+|+...+.-+.|-...- ..+|++++...- .+.|+++.-||=
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPY 309 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPY 309 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCC-CCCCEEEECCCC
T ss_conf 589874898999999998997698832899974432166876-669989958983
No 113
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=64.80 E-value=11 Score=18.85 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=33.2
Q ss_pred ECCCCCHHHH-HHHHHHHCCCCEEEEEEECCHHHHH-HHHHCCCCCCCCCEEEEEECCCCCCCEEEEECC
Q ss_conf 1079478899-9987222089569999806955511-222001233232115897536578871999868
Q gi|254780516|r 7 LFCGIGGIRL-DLEQTFNHRNVECFFSSEINPYSVK-TYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGF 74 (83)
Q Consensus 7 LFsG~GG~~~-gl~~a~~~~~~~~v~a~e~d~~a~~-~y~~n~~~~~~~~DI~~~~~~~~~~~D~l~gG~ 74 (83)
.|-|+||... ||-+.+.+.|+++ ..+|..+.... -++. ..-....+ .+.+.+.+.|+++-+|
T Consensus 12 h~iGigG~GmsalA~~l~~~G~~V-~gsD~~~~~~~~~L~~-~Gi~v~~g----~~~~~l~~~d~vV~Sp 75 (459)
T PRK00421 12 HFVGIGGIGMSGLAEVLLNLGYKV-SGSDLKESAVTQRLLE-LGAIIFIG----HDAENIKGADVVVVSS 75 (459)
T ss_pred EEEEECHHHHHHHHHHHHHCCCEE-EEECCCCCHHHHHHHH-CCCEEECC----CCHHHCCCCCEEEECC
T ss_conf 999866888999999999689939-9988989978999997-87999779----8979879999999899
No 114
>PRK00811 spermidine synthase; Provisional
Probab=64.02 E-value=4 Score=21.06 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC
Q ss_conf 99998722208956999980695551122200123
Q gi|254780516|r 15 RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN 49 (83)
Q Consensus 15 ~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~ 49 (83)
...++...++..++.|..+|+|+...++-+..+|.
T Consensus 90 Gg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~ 124 (283)
T PRK00811 90 GGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPE 124 (283)
T ss_pred HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 79999984278856799994689999999998388
No 115
>KOG2187 consensus
Probab=64.00 E-value=4.4 Score=20.82 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=31.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC
Q ss_conf 96410794788999987222089569999806955511222001
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~ 47 (83)
++|.|||-|-+.+++.+ ++..|.-+|+++.|.+--+.|-
T Consensus 387 llDv~CGTG~iglala~-----~~~~ViGvEi~~~aV~dA~~nA 425 (534)
T KOG2187 387 LLDVCCGTGTIGLALAR-----GVKRVIGVEISPDAVEDAEKNA 425 (534)
T ss_pred EEEEEECCCCEEHHHHC-----CCCCEEEEECCHHHCCHHHHCC
T ss_conf 99863068840000102-----6661210233845444355400
No 116
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=63.90 E-value=13 Score=18.47 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=38.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC----CCEEEEEECCCC--CCCEEEEECCC
Q ss_conf 641079478899998722208956999980695551122200123323----211589753657--88719998689
Q gi|254780516|r 5 TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI----FGDIAKIKTQDI--PDHDVLLAGFP 75 (83)
Q Consensus 5 ~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~----~~DI~~~~~~~~--~~~D~l~gG~P 75 (83)
||+=||.|.+...+.+.. ....|.++|+++...+..+.+++.... .-+....+.... ..+|+++...-
T Consensus 1 LDvGcG~G~~~~~l~~~~---~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~v 74 (98)
T pfam08242 1 LDIGCGTGTLLRALLEAL---PGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVASNV 74 (98)
T ss_pred CCCCCCCCHHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEECCC
T ss_conf 988633799999999878---99889998598899999999998713453111000000022203589889961041
No 117
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=61.81 E-value=9.5 Score=19.16 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCC-EEEEEEECCHHHHHHHHH
Q ss_conf 926964107947889999872220895-699998069555112220
Q gi|254780516|r 1 MLKITDLFCGIGGIRLDLEQTFNHRNV-ECFFSSEINPYSVKTYQA 45 (83)
Q Consensus 1 ml~v~~LFsG~GG~~~gl~~a~~~~~~-~~v~a~e~d~~a~~~y~~ 45 (83)
|||++ +.|+|+ +.++-++++..+. ..|.++|.++.|-..+..
T Consensus 1 m~nIL--vt~~G~-~~~ii~~lk~~~~~~~Vi~~D~~~~a~~~~~a 43 (325)
T PRK12767 1 MMNIL--VTSAGR-RVQLVKALKKSLLGGKVIGADISPLAPALYFA 43 (325)
T ss_pred CCEEE--EECCCC-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHC
T ss_conf 94899--986786-89999999976998599996899899534454
No 118
>KOG0822 consensus
Probab=59.91 E-value=10 Score=18.99 Aligned_cols=70 Identities=30% Similarity=0.474 Sum_probs=41.6
Q ss_pred CCCCHH-HHHHHHHHHC-CCCEEEEEEECCHHHHHHHHH-CC---CC--CCCCCEEEEEECCCCCCCEEE----EECCCC
Q ss_conf 794788-9999872220-895699998069555112220-01---23--323211589753657887199----986899
Q gi|254780516|r 9 CGIGGI-RLDLEQTFNH-RNVECFFSSEINPYSVKTYQA-NF---PN--TLIFGDIAKIKTQDIPDHDVL----LAGFPC 76 (83)
Q Consensus 9 sG~GG~-~~gl~~a~~~-~~~~~v~a~e~d~~a~~~y~~-n~---~~--~~~~~DI~~~~~~~~~~~D~l----~gG~PC 76 (83)
+|=|-+ +..|+.+-.. -+++ ++++|.+|.|..+++. |+ .+ +.+-+|.++..+. ..++||+ .|+|=|
T Consensus 376 aGRGPLv~~~lkaa~~~~RkVk-lyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VSELLGSFGD 453 (649)
T KOG0822 376 AGRGPLVDASLKAAEETDRKVK-LYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP-REQADIIVSELLGSFGD 453 (649)
T ss_pred CCCCCHHHHHHHHHHHHCCCEE-EEEEECCCCHHHHHHHHCHHHHCCEEEEEECCCCCCCCC-HHHCCCHHHHHHCCCCC
T ss_conf 8876078899999987247157-999933854404245424365468169993431246884-44212039976422467
Q ss_pred CCCC
Q ss_conf 7543
Q gi|254780516|r 77 QPFS 80 (83)
Q Consensus 77 q~fS 80 (83)
...|
T Consensus 454 NELS 457 (649)
T KOG0822 454 NELS 457 (649)
T ss_pred CCCC
T ss_conf 6679
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=59.40 E-value=16 Score=18.04 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=36.7
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC--CCC----CEEEEEECCCCCCCEEE-EECC
Q ss_conf 96410794788999987222089569999806955511222001233--232----11589753657887199-9868
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIF----GDIAKIKTQDIPDHDVL-LAGF 74 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~--~~~----~DI~~~~~~~~~~~D~l-~gG~ 74 (83)
+.|.=||.| +.+++.+... .--.++|.|-|+.+.++.+.|...- ..+ +|--+.-. ++++.|.+ +||.
T Consensus 38 l~DIGaGtG--si~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIGGg 111 (187)
T COG2242 38 LWDIGAGTG--SITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIGGG 111 (187)
T ss_pred EEEECCCCC--HHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHC-CCCCCCEEEECCC
T ss_conf 999578866--8999999739-885599992588899999999998499967999546457636-9999999998798
No 120
>KOG1540 consensus
Probab=59.31 E-value=16 Score=18.03 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=31.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCC---CCEEEEEEECCHHHHHHHHHCC
Q ss_conf 269641079478899998722208---9569999806955511222001
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHR---NVECFFSSEINPYSVKTYQANF 47 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~---~~~~v~a~e~d~~a~~~y~~n~ 47 (83)
||++|+..|-|-...++-+..... .=..|..+||+++-.++=+.+-
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa 150 (296)
T KOG1540 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRA 150 (296)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 7589834775256777987611345777761799938989999998777
No 121
>PRK13699 putative methylase; Provisional
Probab=58.54 E-value=12 Score=18.70 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=29.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC
Q ss_conf 69641079478899998722208956999980695551122200123
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN 49 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~ 49 (83)
.|+|-|+|-|.-..+.++.+ -+.+ -+|+|+.-.+.-+.+...
T Consensus 166 lVLDPF~GSGTT~vAA~~lg----R~fI-GiEi~~~Y~~ia~~Rl~~ 207 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQSG----RRYI-GIELLEQYHRAGQQRLAA 207 (227)
T ss_pred EEEECCCCCCHHHHHHHHCC----CCEE-EEECCHHHHHHHHHHHHH
T ss_conf 99977998758999999819----9489-996899999999999999
No 122
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=58.25 E-value=15 Score=18.19 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=26.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHH
Q ss_conf 26964107947889999872220895699998069555112
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT 42 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~ 42 (83)
++|+||.||=||--.=...+ ++..+...|+++.+.+-
T Consensus 65 ~~VLDl~CGkGGDL~Kw~~~----~i~~~vgiDis~~sI~~ 101 (327)
T pfam03291 65 RKVLDLDCGKGGDLEKYFKG----GISGLIGTDIAEVSIEQ 101 (327)
T ss_pred CEEEEECCCCCCCHHHHHHC----CCCEEEEECCCHHHHHH
T ss_conf 87998368664457889747----98689996689999999
No 123
>PRK06057 short chain dehydrogenase; Provisional
Probab=57.89 E-value=12 Score=18.56 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 7947889999872220895699998069555112220012332321158975---------36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
-|.+|+..+.-+.+-..|.+++ .+|.++...+..........+..|+++.. .+.+..+|+|+
T Consensus 14 Gas~GIG~aia~~la~~Ga~Vv-i~d~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iDiLV 84 (255)
T PRK06057 14 GGASGIGLATARRMRAEGATVV-VGDIDPEAGKAAADELGGLFVQVDVTDEDAVNALFDTAAETYGSVDIAF 84 (255)
T ss_pred CCCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8488899999999998699899-9969889999999864997999816999999999999999819987899
No 124
>KOG2360 consensus
Probab=56.75 E-value=10 Score=18.94 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=48.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC--C----CCCCCEEEE-EECCCCCCCEEEEECCC
Q ss_conf 6964107947889999872220895699998069555112220012--3----323211589-75365788719998689
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--N----TLIFGDIAK-IKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~--~----~~~~~DI~~-~~~~~~~~~D~l~gG~P 75 (83)
++++.+|-.|--..-+.+...+ --.+++.|.|+.-.++++.... + ...++|-.. ....+++++..++.-|+
T Consensus 216 ~v~d~caapg~KTsH~a~i~~n--~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~iL~Dps 293 (413)
T KOG2360 216 RVIDTCAAPGNKTSHLAAIMRN--QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYILVDPS 293 (413)
T ss_pred CEEEECCCCCCCHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 2355414665321129988622--48721323416889999999987178745320144447778100265059985798
Q ss_pred CCC
Q ss_conf 975
Q gi|254780516|r 76 CQP 78 (83)
Q Consensus 76 Cq~ 78 (83)
||+
T Consensus 294 cSg 296 (413)
T KOG2360 294 CSG 296 (413)
T ss_pred CCC
T ss_conf 787
No 125
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=56.06 E-value=18 Score=17.74 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEE--CCCCCCCEEEEECCC
Q ss_conf 07947889999872220895699998069555112220012332321158975--365788719998689
Q gi|254780516|r 8 FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK--TQDIPDHDVLLAGFP 75 (83)
Q Consensus 8 FsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~--~~~~~~~D~l~gG~P 75 (83)
--|.||...+.-.+..+.+.+.+.....++...+.+...+.......++.... .+.+++.|+++-..|
T Consensus 132 ilGaGGaa~ai~~al~~~g~~~i~I~nR~~~r~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~d~iINaTp 201 (284)
T PRK12549 132 QLGAGGAGAAVAHALLTLGVERLTLFDVDPARAQALADELNARFPAARVTAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCEEEECCC
T ss_conf 9656616899999999769998999979889999999999865798637641676765421382665789
No 126
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=55.43 E-value=19 Score=17.68 Aligned_cols=40 Identities=30% Similarity=0.319 Sum_probs=29.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC
Q ss_conf 696410794788999987222089569999806955511222001
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~ 47 (83)
|++||=||-|--++=|... ||+ |-|+|+++.+.+.++.-.
T Consensus 125 kaLDLGCG~GRNsLyLa~~----Gfd-VTA~D~N~~sl~~L~~ia 164 (289)
T PRK12335 125 KALDLGCGQGRNSLYLALL----GFD-VTAVDINQASLENLQQIA 164 (289)
T ss_pred CEEEECCCCCCCHHHHHHC----CCC-EEEEECCHHHHHHHHHHH
T ss_conf 4666047888227889757----984-258868999999999999
No 127
>KOG1253 consensus
Probab=54.10 E-value=2.1 Score=22.44 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=31.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC
Q ss_conf 269641079478899998722208956999980695551122200123
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN 49 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~ 49 (83)
+++||-+|..|= .+++.+-+-.++.-|.|+|.++.+.+.-+.|-.-
T Consensus 111 l~vLealsAtGl--rslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~ 156 (525)
T KOG1253 111 LRVLEALSATGL--RSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL 156 (525)
T ss_pred CHHHHHHHHHHH--HHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 008987645517--8889988704245310367877788999866550
No 128
>PRK08643 acetoin reductase; Validated
Probab=54.00 E-value=20 Score=17.58 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=43.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC----CC-CCCCCEEEEEE---------CCCCCC
Q ss_conf 92696410794788999987222089569999806955511222001----23-32321158975---------365788
Q gi|254780516|r 1 MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PN-TLIFGDIAKIK---------TQDIPD 66 (83)
Q Consensus 1 ml~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~----~~-~~~~~DI~~~~---------~~~~~~ 66 (83)
|=|+.=.--|.+|+..++-..+-..|++++. .++++...+...... .+ .....|+++.+ .+++.+
T Consensus 1 mnKvalVTGg~~GIG~aia~~la~~Ga~V~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 79 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAI-VDYNEETAKAAADKLSSDGGKAIAVKADVSNRDQVFDAVQQVVDTFGD 79 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9849999575788999999999987999999-969889999999999853990999980589999999999999998299
Q ss_pred CEEEE
Q ss_conf 71999
Q gi|254780516|r 67 HDVLL 71 (83)
Q Consensus 67 ~D~l~ 71 (83)
+|+|+
T Consensus 80 iDiLV 84 (256)
T PRK08643 80 LNVVV 84 (256)
T ss_pred CCEEE
T ss_conf 87999
No 129
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=53.88 E-value=20 Score=17.55 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=45.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC-------CCCCEEEEEECCCCCCCEEEEECC
Q ss_conf 2696410794788999987222089569999806955511222001233-------232115897536578871999868
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDIAKIKTQDIPDHDVLLAGF 74 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~-------~~~~DI~~~~~~~~~~~D~l~gG~ 74 (83)
.||+|.=.|-|-++..|-++... .-.|+.+|+++.-.++-+.|+... ...+||++.-..+ ++|.++---
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg~--~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~--~vDav~LDm 171 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVGP--EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE--DVDAVFLDL 171 (256)
T ss_pred CEEEECCCCCHHHHHHHHHHHCC--CCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCEEEECC
T ss_conf 78998156805999999996488--84599999527899999999998424561378705400024655--467799758
Q ss_pred C
Q ss_conf 9
Q gi|254780516|r 75 P 75 (83)
Q Consensus 75 P 75 (83)
|
T Consensus 172 p 172 (256)
T COG2519 172 P 172 (256)
T ss_pred C
T ss_conf 9
No 130
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=53.82 E-value=20 Score=17.54 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=39.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCC-C--EEEEEECCC-C-------CCCEEEE
Q ss_conf 696410794788999987222089569999806955511222001233232-1--158975365-7-------8871999
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-G--DIAKIKTQD-I-------PDHDVLL 71 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~-~--DI~~~~~~~-~-------~~~D~l~ 71 (83)
||+||=||.|-..+.+...+ +-..|...|.+ ......++|....... . .+..+++.+ . ..+|+|+
T Consensus 47 ~VLELGaG~GL~Gi~~a~~~---~~~~V~lTD~~-~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~Il 122 (171)
T pfam10294 47 NVLELGSGCGLVGIAVALLL---PGASVTITDLE-EAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDLIL 122 (171)
T ss_pred EEEEECCCCCHHHHHHHHHC---CCCEEEECCCH-HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEEE
T ss_conf 67870566575899999857---98589963837-899999999997057899669998110898843331467767899
Q ss_pred EC
Q ss_conf 86
Q gi|254780516|r 72 AG 73 (83)
Q Consensus 72 gG 73 (83)
|+
T Consensus 123 ~s 124 (171)
T pfam10294 123 AA 124 (171)
T ss_pred EE
T ss_conf 71
No 131
>KOG0820 consensus
Probab=52.84 E-value=21 Score=17.46 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=46.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-------CCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 964107947889999872220895699998069555112220012332-------3211589753657887199986899
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-------IFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-------~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
|+|.=-|-|-++..+-.++ +.|.|+|+|+.-..-+++.+.+++ +.+|.-+. ++|-+|+.+.--|-
T Consensus 62 VLEvGPGTGnLT~~lLe~~-----kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~---d~P~fd~cVsNlPy 133 (315)
T KOG0820 62 VLEVGPGTGNLTVKLLEAG-----KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT---DLPRFDGCVSNLPY 133 (315)
T ss_pred EEEECCCCCHHHHHHHHHC-----CEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC---CCCCCCEEECCCCC
T ss_conf 9995798778999999720-----848999408078999999866998656046885031257---88510311226985
Q ss_pred CC
Q ss_conf 75
Q gi|254780516|r 77 QP 78 (83)
Q Consensus 77 q~ 78 (83)
|=
T Consensus 134 qI 135 (315)
T KOG0820 134 QI 135 (315)
T ss_pred CC
T ss_conf 33
No 132
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=51.76 E-value=20 Score=17.51 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=44.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-----------CCEEEEEECCC--CCCCE
Q ss_conf 269641079478899998722208956999980695551122200123323-----------21158975365--78871
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-----------FGDIAKIKTQD--IPDHD 68 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-----------~~DI~~~~~~~--~~~~D 68 (83)
+||||.=||.|=++..|-+. |++.|-.+|-.+...++=+.+-...+. +.+|.++..+. =..+|
T Consensus 86 ~~vLDVGCGGGlLsE~lAR~----Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~FD 161 (275)
T TIGR01983 86 LRVLDVGCGGGLLSEPLARL----GANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKKSFD 161 (275)
T ss_pred CEEEEECCCHHHHHHHHHHC----CCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77998427857888999755----88425775211779999998887334023311114544430788730557841573
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780516|r 69 VLLA 72 (83)
Q Consensus 69 ~l~g 72 (83)
++++
T Consensus 162 ~V~~ 165 (275)
T TIGR01983 162 VVTC 165 (275)
T ss_pred EEEE
T ss_conf 3764
No 133
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=51.42 E-value=22 Score=17.33 Aligned_cols=65 Identities=25% Similarity=0.382 Sum_probs=37.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCC--CCEEEEEC
Q ss_conf 696410794788999987222089569999806955511222001233232115897536578--87199986
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP--DHDVLLAG 73 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~~--~~D~l~gG 73 (83)
||+|+=||-|.+-.-|+. ..+++ ++-+|+|+.+...-..+ .-.++.+|+.+ ....++ .+|.++.+
T Consensus 16 rVLDlGCG~G~ll~~L~~---~k~v~-~~GvEid~~~v~~a~~k-g~~Vi~~D~d~-~l~~f~d~sFD~VIls 82 (193)
T pfam07021 16 RVLDLGCGDGSLLYLLQE---EKQVD-GRGIELDAAGVAECVAK-GLSVIQGDADK-GLEHFPDKSFDYVILS 82 (193)
T ss_pred EEEEECCCCCHHHHHHHH---CCCCC-EEEECCCHHHHHHHHHC-CCCEECCCHHH-CHHHCCCCCCCEEEHH
T ss_conf 899836889899999987---66987-69833899999999864-79545077445-9745776780378698
No 134
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=51.37 E-value=22 Score=17.33 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=37.0
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-CCCEEEEEECCCCCCCEEEEECCCCCC
Q ss_conf 107947889999872220895699998069555112220012332-321158975365788719998689975
Q gi|254780516|r 7 LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDIPDHDVLLAGFPCQP 78 (83)
Q Consensus 7 LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-~~~DI~~~~~~~~~~~D~l~gG~PCq~ 78 (83)
|.=|.|.+....-+.+...+++.+...--.....+.+...|+... ..-+..++. +.+.+.|+++.+.....
T Consensus 16 lVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~-~~l~~~DivI~aT~s~~ 87 (134)
T pfam01488 16 LLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDELE-ELLAEADIVISATSAPT 87 (134)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHH-HHHHHCCEEEEECCCCC
T ss_conf 9999609999999999975998899954757899999998499725898513544-13631999999259997
No 135
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=50.77 E-value=19 Score=17.62 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHH--HCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEE-ECCC
Q ss_conf 079478899998722--2089569999806955511222001233232115897536578871999-8689
Q gi|254780516|r 8 FCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLL-AGFP 75 (83)
Q Consensus 8 FsG~GG~~~gl~~a~--~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~~~~D~l~-gG~P 75 (83)
.-|+|.+....-++. ...+++.+..+|.++...+.++..+.- +.+.|+.++-. -+++|+++ +.||
T Consensus 5 iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~iD~v~I~tp~ 72 (120)
T pfam01408 5 IVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESFGV-PAYSDLEELLA--DPDVDAVSVATPP 72 (120)
T ss_pred EEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC-CEECCHHHHHH--CCCCCEEEECCCH
T ss_conf 99077999999999985599978999982999999999998399-67886999973--7788989990874
No 136
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=48.47 E-value=19 Score=17.62 Aligned_cols=70 Identities=21% Similarity=0.350 Sum_probs=39.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC------CC-CCEEE------EEE--CCCCCCC
Q ss_conf 696410794788999987222089569999806955511222001233------23-21158------975--3657887
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LI-FGDIA------KIK--TQDIPDH 67 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~------~~-~~DI~------~~~--~~~~~~~ 67 (83)
++.|.=||-|+ ..+|.+..--+-=-|++.|-++.+....+.|-..- .+ -+|.- +.. ..+++++
T Consensus 23 v~wDIGaGtGS--~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~~~~~~~~~~~~~~~ 100 (135)
T TIGR02469 23 VLWDIGAGTGS--VTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELLNSDAPEDSAKLPEP 100 (135)
T ss_pred EEEEECCCCCH--HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCC
T ss_conf 68896057483--8999997359860799985376898799999998289996325635568433367777100588746
Q ss_pred EE-EEECC
Q ss_conf 19-99868
Q gi|254780516|r 68 DV-LLAGF 74 (83)
Q Consensus 68 D~-l~gG~ 74 (83)
|- ++||.
T Consensus 101 Da~fvGGs 108 (135)
T TIGR02469 101 DAVFVGGS 108 (135)
T ss_pred CEEEECCC
T ss_conf 88888389
No 137
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=47.66 E-value=25 Score=17.02 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=42.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-CCEEEEEECCCCCCCEEEE
Q ss_conf 69641079478899998722208956999980695551122200123323-2115897536578871999
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPDHDVLL 71 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-~~DI~~~~~~~~~~~D~l~ 71 (83)
+++|+=||=|--...+..+.....-..++..||.+.|...-.+.++.... ..|.+++...+ ..+|+++
T Consensus 88 ~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~~~~~~~Va~~~~lP~~d-~s~D~vl 156 (272)
T PRK11088 88 AILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFAD-QSLDAII 156 (272)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCCCCCC-CCCEEEE
T ss_conf 48881587778999999974115787379981179999999626888549996100188876-6540899
No 138
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=47.29 E-value=24 Score=17.13 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=46.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-CCCEEEEEECCCCCCCEEEE
Q ss_conf 6964107947889999872220895699998069555112220012332-32115897536578871999
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDIPDHDVLL 71 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-~~~DI~~~~~~~~~~~D~l~ 71 (83)
++.||=||-|-...=|.+- ..-..+...|.++.-.+.-+..-|+.. ..+||++..++. +.|+|+
T Consensus 33 ~v~DLGCGpGnsTelL~~R---wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~--~~dllf 97 (257)
T COG4106 33 RVVDLGCGPGNSTELLARR---WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQ--PTDLLF 97 (257)
T ss_pred EEEECCCCCCHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHCCCCCEECCCHHHCCCCC--CCCHHH
T ss_conf 0345577887788999986---8888676046999999999974899732105275449987--633033
No 139
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=46.86 E-value=17 Score=17.84 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH----HHCCC-CCCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 9478899998722208956999980695551122----20012-332321158975---------365788719998
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY----QANFP-NTLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y----~~n~~-~~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
|.+|+..+.-+.+-+.|.+++. ++.++...+.. +..-. -.....|+++.+ .+.++.+|+|+-
T Consensus 22 gs~GIG~~ia~~la~~Ga~V~i-~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVn 97 (259)
T PRK06124 22 SARGLGLEIARALAEAGAHVLV-NGRNAARVEAAVAALRAAGGAAEALVFDISDEEAVAAAFARIDAEHGRLDILVN 97 (259)
T ss_pred CCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 6748999999999987999999-969889999999999965995899995179999999999999997599979998
No 140
>PRK06841 short chain dehydrogenase; Provisional
Probab=46.71 E-value=25 Score=17.07 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC--CCCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 79478899998722208956999980695551122200123--32321158975---------36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~--~~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
-|.+|+..+.-+.+-..|.+++. ++.++...+..+...+. ..+..|+++.. .+.++.+|+|+
T Consensus 22 Gas~GIG~aiA~~la~~Ga~V~i-~d~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~g~iDiLV 94 (255)
T PRK06841 22 GGASGIGHAIAELFAAKGARVAL-LDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAAISAFGRIDILV 94 (255)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 96778999999999987999999-96987899999984599669999846999999999999999819987999
No 141
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=46.30 E-value=17 Score=17.85 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEC
Q ss_conf 079478899998722208956999980695551122200123323211589753657887199986
Q gi|254780516|r 8 FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAG 73 (83)
Q Consensus 8 FsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~~~~D~l~gG 73 (83)
|=|.|-|..++-..+.+.+.+.+..++.++...+.++..+.......|.. +-..+.|+++-.
T Consensus 4 ~IG~G~mg~ai~~~l~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~DvIila 65 (93)
T pfam03807 4 IIGAGNMGEALARGLAAAGHEVIIANSRNPEKAAALAEELGVGATAVSNE----EAAEEADVVILA 65 (93)
T ss_pred EECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHH----HHHHCCCEEEEE
T ss_conf 99700999999999997799612786487899999999819976458999----997449989999
No 142
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=45.35 E-value=14 Score=18.33 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=36.8
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC----------CCEEEEEECCCCCCCEEEEE
Q ss_conf 9641079478899998722208956999980695551122200123323----------21158975365788719998
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI----------FGDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~----------~~DI~~~~~~~~~~~D~l~g 72 (83)
|+=+=-|-||.. +...++...+-+.++|+|+.-.+.-++.+|.... .+|-.++-.+.-.++|+|+-
T Consensus 80 VLiiGgGdG~tl---Revlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 80 VLIIGGGDGGTL---REVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred EEEECCCCCHHH---HHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEE
T ss_conf 999889766999---9998368843379997088999999986667543357973689961079998748876778998
No 143
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=44.22 E-value=29 Score=16.73 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=45.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC------CCCCCCCEEEEEE-CCC-CCCCEEEEE
Q ss_conf 92696410794788999987222089569999806955511222001------2332321158975-365-788719998
Q gi|254780516|r 1 MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDIAKIK-TQD-IPDHDVLLA 72 (83)
Q Consensus 1 ml~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~------~~~~~~~DI~~~~-~~~-~~~~D~l~g 72 (83)
|+|+.=+ |.|.+..+|-...-+.+.++... -.|+.-.+..+.++ |+...-.+|+-.. .++ +.+.|+++-
T Consensus 1 MmkI~Vi--GaGawGtAlA~~la~n~~~V~lw-~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l~~ad~iii 77 (325)
T PRK00094 1 MMKIAVL--GAGSWGTALAILLARNGHDVVLW-GRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEALADADLILV 77 (325)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHHCCCEEEEE-EECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEE
T ss_conf 9889998--98999999999999789978999-83899999999649886568978589983897899999837984999
Q ss_pred CCCCCCCC
Q ss_conf 68997543
Q gi|254780516|r 73 GFPCQPFS 80 (83)
Q Consensus 73 G~PCq~fS 80 (83)
.-|.|.+.
T Consensus 78 avPs~~~~ 85 (325)
T PRK00094 78 AVPSHAFR 85 (325)
T ss_pred ECCHHHHH
T ss_conf 45769999
No 144
>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=44.08 E-value=25 Score=17.05 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHCCC-CEEEEEEECC
Q ss_conf 794788999987222089-5699998069
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRN-VECFFSSEIN 36 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~-~~~v~a~e~d 36 (83)
||+||++.-=+ +.+... -+.+++.|.-
T Consensus 8 SGvGGLsV~~e-i~~~lp~~~yiY~~D~~ 35 (262)
T TIGR00067 8 SGVGGLSVLKE-ILKQLPKEEYIYVGDTA 35 (262)
T ss_pred CCCCHHHHHHH-HHHHCCCCCEEEEECCC
T ss_conf 68635789999-99857897368861423
No 145
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=43.94 E-value=26 Score=16.93 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC--CCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 794788999987222089569999806955511222001233--2321158975---------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~--~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
-|.+|+-.++-+.+...|++++ .++.++...+..+..++.. .+..|+++.. .+.++.+|+|+.
T Consensus 13 Gas~GIG~aia~~l~~~Ga~V~-~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iDiLVn 86 (263)
T PRK06200 13 GGGSGIGRALVERFLAEGARVA-VLERSAEKCASLRQRFGDDVLVVEGDVTSYADNQRAVAQTVDRFGKLDCFVG 86 (263)
T ss_pred CCCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8667999999999998799999-9979999999999981886468717999999999999999998499888997
No 146
>PRK01581 speE spermidine synthase; Validated
Probab=42.76 E-value=21 Score=17.42 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC------------CCC-CCCCEEEEEECCCCCCCEEEEECCCCCC
Q ss_conf 788999987222089569999806955511222001------------233-2321158975365788719998689975
Q gi|254780516|r 12 GGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------------PNT-LIFGDIAKIKTQDIPDHDVLLAGFPCQP 78 (83)
Q Consensus 12 GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~------------~~~-~~~~DI~~~~~~~~~~~D~l~gG~PCq~ 78 (83)
||-.+|++..++...++.|.-+|.||.-.+..+.+= |.+ .+..|..+.-.+.-..+|+|+--+|=.+
T Consensus 148 GGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FDvIIVDlPDP~ 227 (363)
T PRK01581 148 GGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYDVIIIDFPDPA 227 (363)
T ss_pred CCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 76439999987179856278995699999987519799875120014980499921089998616754428999589998
No 147
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=41.62 E-value=32 Score=16.51 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEC---CCCCCCEEEEECCC
Q ss_conf 079478899998722208956999980695551122200123323211589753---65788719998689
Q gi|254780516|r 8 FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT---QDIPDHDVLLAGFP 75 (83)
Q Consensus 8 FsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~---~~~~~~D~l~gG~P 75 (83)
-+|.|-+...+-+.+...+ .+...|.|+...+.++... ...+++|.++... ..+.+.|.++...|
T Consensus 3 I~G~g~~G~~la~~L~~~~--~v~vId~d~~~~~~~~~~~-~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~ 70 (115)
T pfam02254 3 IIGYGRVGRSLAEELREGG--PVVVIDKDPERVEELREEG-VPVVVGDATDEEVLEEAGIEDADAVVAATG 70 (115)
T ss_pred EECCCHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCC-CEEEEEECCCHHHHHHHCCCCCCEEEEECC
T ss_conf 9878889999999998089--9999999879987788669-869999568866787619202879999629
No 148
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=40.61 E-value=33 Score=16.43 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC--CCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 7947889999872220895699998069555112220012332--321158975---------36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--IFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~--~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
-|.+|+..++-+.+-..|.+++. ++.++...+-.+..++... +..|+++.+ .++++.+|+|+
T Consensus 12 Ggs~GIG~aia~~~a~~Ga~V~i-~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~~G~iDiLV 84 (262)
T TIGR03325 12 GGASGLGRAIVDRFVAEGARVAV-LDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLI 84 (262)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 67878999999999987999999-98998999999986799679998457999999999999999849988899
No 149
>PRK12742 oxidoreductase; Provisional
Probab=38.96 E-value=35 Score=16.29 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEE-----CCCCCCCEEEEE
Q ss_conf 7947889999872220895699998069555112220012332321158975-----365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK-----TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~-----~~~~~~~D~l~g 72 (83)
-|-+|+..++-+.+...|++++.....++...+.+........+..|..+.+ .++++.+|+|+-
T Consensus 13 Gas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~iD~lVn 81 (237)
T PRK12742 13 GGSRGIGAAIVRRFVTDGANVVFTYAGSKDAAERLAAETGATAVFTDSADRDAVIDVVRKSGPLDILVV 81 (237)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 788799999999999879999997799989999998863982899354589999999998699989998
No 150
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=37.95 E-value=37 Score=16.20 Aligned_cols=63 Identities=13% Similarity=0.214 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC--CCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 794788999987222089569999806955511222001233--2321158975---------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~--~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
-|.+|+..+.-+.+-..|.+++. +|+++...+......... .+..|+++.+ .+.+..+|+|+-
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~i-~d~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVN 85 (256)
T PRK07067 12 GAASGIGEAVAQRYLREGARVVL-ADIKPARAALAALEIGPAAVAVSLDVTRQDSIDRIVAAAVERFGGIDILVN 85 (256)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 76778999999999987999999-979889999999981997599998489999999999999998199989998
No 151
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=37.89 E-value=30 Score=16.67 Aligned_cols=64 Identities=11% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC----C-CCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 7947889999872220895699998069555112220012----3-32321158975---------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----N-TLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~----~-~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
-|.+|+..+.-+.+-..|.+++...+.++.+.+....... . .....|+++.+ .++++.+|+|+-
T Consensus 13 G~s~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~~~~~v~~~~~~~G~iDiLVN 90 (247)
T PRK12935 13 GGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGKVDILVN 90 (247)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 727689999999999879989997699989999999999843995899985799999999999999998399989998
No 152
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=37.26 E-value=38 Score=16.14 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC
Q ss_conf 079478899998722208956999980695551122200123
Q gi|254780516|r 8 FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN 49 (83)
Q Consensus 8 FsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~ 49 (83)
--|.||...|.-.++...+.+.+......+...+-+...++.
T Consensus 131 ilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~ 172 (283)
T COG0169 131 ILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGE 172 (283)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 989768999999999986998799995888999999998645
No 153
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.05 E-value=38 Score=16.13 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 7947889999872220895699998069555112220012332321158975---------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
-|.+|+..+.-+.+-..|.+++.....++...+..+.. ....+..|+++.+ .++++.+|+|+-
T Consensus 14 Gas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~-~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVN 85 (254)
T PRK06463 14 GGSRGIGRAIAEKFLKEGAKVAILYNSSEDKAKELKEK-GVETFKCDVSNRDQVRKAKEEIHKKLGRIDVLVN 85 (254)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 84778999999999988999999649978999999866-9889997389999999999999998299989998
No 154
>PRK08265 short chain dehydrogenase; Provisional
Probab=36.04 E-value=40 Score=16.04 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC--CCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 7947889999872220895699998069555112220012332--321158975---------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--IFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~--~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
-|-+|+..++-+.+-..|++++. .+.++...+.....++... ...|+++.. .+.++.+|+|+-
T Consensus 13 Ggs~GIG~aia~~la~~Ga~V~i-~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~fG~iDiLVN 86 (261)
T PRK08265 13 GGATLIGAAVARALVAAGACVAI-LDIDADNGAAVAASLGERARFIATDITDDAAIERAVATAVARFGGLDILVN 86 (261)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 87768999999999987998999-979889999999981997289981389999999999999998199878998
No 155
>KOG1270 consensus
Probab=35.59 E-value=36 Score=16.23 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=33.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC
Q ss_conf 26964107947889999872220895699998069555112220012
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~ 48 (83)
++++|.=||.|=++.-|-+. + ..|..+|..+.+.++++.+-.
T Consensus 91 ~~ilDvGCGgGLLSepLArl----g-a~V~GID~s~~~V~vA~~h~~ 132 (282)
T KOG1270 91 MKILDVGCGGGLLSEPLARL----G-AQVTGIDASDDMVEVANEHKK 132 (282)
T ss_pred CEEEEECCCCCCCCHHHHHH----C-CEEEEECCHHHHHHHHHHHHH
T ss_conf 64787236755023235750----8-856852655999999987510
No 156
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=34.51 E-value=38 Score=16.12 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=41.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC
Q ss_conf 269641079478899998722208956999980695551122200123323
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI 52 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~ 52 (83)
||+.-|+||.==..+||-++... |+++.+-+-+.+.-.+.|-.|.|+...
T Consensus 1 MkvAvLySGGKDS~~ALy~al~e-G~eV~~LV~v~seN~eSyMfH~pN~Hl 50 (227)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE-GFEVKYLVGVISENEESYMFHVPNVHL 50 (227)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCEEECHHHHH
T ss_conf 90689851871368999999862-885478510002889862053425789
No 157
>PRK10904 DNA adenine methylase; Provisional
Probab=33.67 E-value=22 Score=17.37 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=24.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
Q ss_conf 696410794788999987222089569999806955511222
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ 44 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~ 44 (83)
+++|-|.|.|..-+.+ ..+.+..+|+++.-+.+|+
T Consensus 30 ~Y~EPF~GgGaVff~~-------~~~~~~lnDiN~~LIn~y~ 64 (271)
T PRK10904 30 CLIEPFVGAGSVFLNT-------DFSRYILADINSDLISLYN 64 (271)
T ss_pred CEEEECCCCEEEEEEC-------CCCCEEEEECCHHHHHHHH
T ss_conf 6871033740010214-------7784798858999999999
No 158
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=33.64 E-value=44 Score=15.83 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHCCCCCC
Q ss_conf 7947889999872220--895699998069555112220012332
Q gi|254780516|r 9 CGIGGIRLDLEQTFNH--RNVECFFSSEINPYSVKTYQANFPNTL 51 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~--~~~~~v~a~e~d~~a~~~y~~n~~~~~ 51 (83)
-|+|....++-...++ .+++.+..+|.++..++...+.++...
T Consensus 6 VGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~ 50 (255)
T COG1712 6 VGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRC 50 (255)
T ss_pred EECCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 823378899999986688643699994488788888886038876
No 159
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.43 E-value=44 Score=15.81 Aligned_cols=61 Identities=11% Similarity=0.292 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC--CCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 94788999987222089569999806955511222001233--2321158975---------36578871999
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~--~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
|.+|+..++-+.+-..|.+++ .++.++...+.....++.. ....|+++.. .+++..+|+|+
T Consensus 17 assGIG~aiA~~la~~Ga~Vv-l~dr~~~~l~~~~~~lg~~~~~~~~DVtd~~~v~~~v~~i~~~~G~iDiLV 88 (296)
T PRK05872 17 AARGVGAELARRLHARGAKVA-LVDLEEAELAALAAELGDRVLTVVADVTDLAAMQAAAEEAVERFGGIDVVV 88 (296)
T ss_pred CCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 105899999999998799899-998999999999998388738999827999999999999999719987876
No 160
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=33.40 E-value=37 Score=16.19 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH-H---HHHCCCC-CCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 794788999987222089569999806955511-2---2200123-32321158975---------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK-T---YQANFPN-TLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~-~---y~~n~~~-~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
-|.+|+..+.-+.+-..|.+++.....++...+ + ++..-.+ ..+..|+++.+ .+++..+|+|+-
T Consensus 14 Ga~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iDiLVN 91 (261)
T PRK08936 14 GGSTGLGRAMAVRFGKEKAKVVINYRSDESEANDVAEEIKKVGGEAIAVKGDVTVESDVVNLIQSAVKEFGTLDVMIN 91 (261)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 847789999999999879999997289878999999999965993899982799999999999999998299889998
No 161
>KOG2671 consensus
Probab=33.30 E-value=18 Score=17.79 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=37.8
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHH-------HHHHHHHCCCC---CCCCCEEEEEEC-----CCCCCCE
Q ss_conf 96410794788999987222089569999806955-------51122200123---323211589753-----6578871
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-------SVKTYQANFPN---TLIFGDIAKIKT-----QDIPDHD 68 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~-------a~~~y~~n~~~---~~~~~DI~~~~~-----~~~~~~D 68 (83)
|.|=|.|-|++-+....- |.- |.-.|||-. .....++||.+ ....-|+-..+. ..--.+|
T Consensus 212 vyDPFVGTGslLvsaa~F----Ga~-viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671 212 VYDPFVGTGSLLVSAAHF----GAY-VIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred EECCCCCCCCEEEEHHHH----CCE-EECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEECCCCCCHHHCCEEE
T ss_conf 744765667426662230----635-641245312011345777426676877477532032045105676301032333
Q ss_pred EEEECCCC
Q ss_conf 99986899
Q gi|254780516|r 69 VLLAGFPC 76 (83)
Q Consensus 69 ~l~gG~PC 76 (83)
.|++-||-
T Consensus 287 aIvcDPPY 294 (421)
T KOG2671 287 AIVCDPPY 294 (421)
T ss_pred EEEECCCC
T ss_conf 78727981
No 162
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=33.03 E-value=32 Score=16.48 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=11.1
Q ss_pred EEEEECCHHHHHHHHHCCC
Q ss_conf 9998069555112220012
Q gi|254780516|r 30 FFSSEINPYSVKTYQANFP 48 (83)
Q Consensus 30 v~a~e~d~~a~~~y~~n~~ 48 (83)
++.+|+|+.+.+.-+.|..
T Consensus 263 i~G~D~D~~ai~~Ar~Na~ 281 (716)
T PRK11783 263 FYGSDIDPRVIQAARRNAR 281 (716)
T ss_pred EEEEECCHHHHHHHHHHHH
T ss_conf 8999599899999999999
No 163
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=32.89 E-value=23 Score=17.20 Aligned_cols=59 Identities=12% Similarity=0.280 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECC--HHHHHHHHHCCCC-----CCCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 7947889999872220895699998069--5551122200123-----32321158975---------36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEIN--PYSVKTYQANFPN-----TLIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d--~~a~~~y~~n~~~-----~~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
|||| +..|. .+-..|.+++ .+|++ +...+..+..... ..+--|+++.. .+++...|+|+
T Consensus 11 SGIG-~~iA~--~LA~aGa~v~-~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T~~~e~~~~~~~~~~~fG~~DiLV 85 (258)
T TIGR01963 11 SGIG-LAIAK--ALAAAGANVV-VNDLGEADEGAEAAAKVATDAGGSVIYLVADVTKEEEIADMIQAVAAEFGGLDILV 85 (258)
T ss_pred HHHH-HHHHH--HHHHCCCEEE-EECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 1678-99999--9987298899-84678878999999999996188357751478888999999999999856887488
No 164
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=32.80 E-value=32 Score=16.50 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHCCCC--EEEEEEECCHHHHHHHHHCCCCCCC
Q ss_conf 07947889999872220895--6999980695551122200123323
Q gi|254780516|r 8 FCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLI 52 (83)
Q Consensus 8 FsG~GG~~~gl~~a~~~~~~--~~v~a~e~d~~a~~~y~~n~~~~~~ 52 (83)
|=|+|-|..++-+.+...++ +.++..+.++...+.++.+|+....
T Consensus 5 fIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~~v~~ 51 (255)
T PRK06476 5 FIGTGAITEAMVTGLLSSPADVSEIIVSPRNAQIAARLAARFAKVRI 51 (255)
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEE
T ss_conf 98646999999999997889925088989898999999987695598
No 165
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=32.38 E-value=46 Score=15.72 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCHHHHHHH--HHCCCC--CCCC-CEEEEEECCCCCCCEE--EEECCCCCC
Q ss_conf 8899998722208956999980695551122--200123--3232-1158975365788719--998689975
Q gi|254780516|r 13 GIRLDLEQTFNHRNVECFFSSEINPYSVKTY--QANFPN--TLIF-GDIAKIKTQDIPDHDV--LLAGFPCQP 78 (83)
Q Consensus 13 G~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y--~~n~~~--~~~~-~DI~~~~~~~~~~~D~--l~gG~PCq~ 78 (83)
|.+.++..+...+--+ +.-+|++++..+-- -.+|.. .+.. .+|+.=+.++..+.|+ +++|+|=+|
T Consensus 8 Gss~A~a~~~~g~a~E-~vliDin~~ka~Gea~DL~ha~~f~~~~~~~v~~gdY~dc~daD~vVITAG~~QKP 79 (302)
T TIGR01771 8 GSSTAFALLNQGLADE-IVLIDINKDKAEGEAMDLQHAASFLPTPGVKVRAGDYSDCKDADLVVITAGAPQKP 79 (302)
T ss_pred HHHHHHHHHHCCCCCE-EEEEECCHHHHHHHHHHHHCCHHHCCCCCEEEECCCHHHHCCCCEEEEECCCCCCC
T ss_conf 8999999973150318-87883475778987865522222237861177618979963897899932777534
No 166
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=32.12 E-value=46 Score=15.69 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=27.9
Q ss_pred CCEEEEEEECCHHHHHHHHHCCCCCC-CCCEEEEEE---CCCCCCCEEEEE
Q ss_conf 95699998069555112220012332-321158975---365788719998
Q gi|254780516|r 26 NVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK---TQDIPDHDVLLA 72 (83)
Q Consensus 26 ~~~~v~a~e~d~~a~~~y~~n~~~~~-~~~DI~~~~---~~~~~~~D~l~g 72 (83)
+++ |--.|.|+..++-+..++|++. ++||-++.+ ...+.+.|.+++
T Consensus 254 ~~~-v~iIe~d~~~~~~la~~l~~~~Vi~GD~td~~~L~e~gi~~aD~~ia 303 (455)
T PRK09496 254 GYS-VKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (455)
T ss_pred CCE-EEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCEEEE
T ss_conf 883-89970898999999974785399978876889997636455648999
No 167
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=32.08 E-value=38 Score=16.15 Aligned_cols=58 Identities=9% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC---CCCCCEEEEEEC---------CCCCCCEEEE
Q ss_conf 8899998722208956999980695551122200123---323211589753---------6578871999
Q gi|254780516|r 13 GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKIKT---------QDIPDHDVLL 71 (83)
Q Consensus 13 G~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~---~~~~~DI~~~~~---------~~~~~~D~l~ 71 (83)
|+..+.-+.+...|++++. .-......+-++..++. .+..-|+++... +++.++|+|+
T Consensus 17 GiG~A~A~~l~~~G~~vvl-~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLv 86 (246)
T COG4221 17 GIGEATARALAEAGAKVVL-AARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILV 86 (246)
T ss_pred HHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 6889999999978996999-863688999999862567437896136788999999999997517605899
No 168
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=31.87 E-value=47 Score=15.67 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
Q ss_conf 794788999987222089569999806955511
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK 41 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~ 41 (83)
=|.||+..-+-...++.+++.+.+.|-++....
T Consensus 5 iGaGg~ar~v~~~~~~~~~~v~gfiDd~~~~~~ 37 (201)
T TIGR03570 5 IGAGGHGRVVADIAESSGWEIVGFLDDNPALQG 37 (201)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 967889999999999689939999989830067
No 169
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=31.74 E-value=47 Score=15.66 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=32.5
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC--CC----CCCCCEEEEEEC
Q ss_conf 96410794788999987222089569999806955511222001--23----323211589753
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PN----TLIFGDIAKIKT 61 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~--~~----~~~~~DI~~~~~ 61 (83)
+.||=+|-|=++ +-.+ ...+-|.|.|.||+.....+.|. ++ ..+.+|-++++.
T Consensus 36 ~~DLGaGsGiLs--~~Aa---~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 36 FADLGAGSGILS--VVAA---HAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred EEECCCCCCHHH--HHHH---HHHCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
T ss_conf 563468863288--9887---5320278874180787776505777887646898055321332
No 170
>PRK12743 acetoin dehydrogenase; Provisional
Probab=30.55 E-value=50 Score=15.55 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=39.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHC---CCC--CCCCCEEEEEE---------CCCCCC
Q ss_conf 9269641079478899998722208956999980695551122200---123--32321158975---------365788
Q gi|254780516|r 1 MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPN--TLIFGDIAKIK---------TQDIPD 66 (83)
Q Consensus 1 ml~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n---~~~--~~~~~DI~~~~---------~~~~~~ 66 (83)
|=||.=.--|.+|+..+.-..+-+.|++++.....++...+....- +.. ..+..|+++.. .+++..
T Consensus 1 M~KValITGgs~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~ 80 (253)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVVSHGVRAEIVHLDLSNLPEGAQAIEKLIQRLGR 80 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 99989990758899999999999879989997489979999999999945991899990489999999999999998199
Q ss_pred CEEEE
Q ss_conf 71999
Q gi|254780516|r 67 HDVLL 71 (83)
Q Consensus 67 ~D~l~ 71 (83)
+|+|+
T Consensus 81 iDilV 85 (253)
T PRK12743 81 LDVLV 85 (253)
T ss_pred CCEEE
T ss_conf 98999
No 171
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=30.46 E-value=50 Score=15.54 Aligned_cols=67 Identities=12% Similarity=0.293 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHCC-CCEEEEEEECCHHHHHHHHHCCCC--CCCCCEEEEEECCCCC--C--CEEEEECCC
Q ss_conf 079478899998722208-956999980695551122200123--3232115897536578--8--719998689
Q gi|254780516|r 8 FCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIKTQDIP--D--HDVLLAGFP 75 (83)
Q Consensus 8 FsG~GG~~~gl~~a~~~~-~~~~v~a~e~d~~a~~~y~~n~~~--~~~~~DI~~~~~~~~~--~--~D~l~gG~P 75 (83)
-=|+||-..|+--.+... +-+++-+|=..+.|.+..+. +.. ..++|.+..++.+++| + +|||+=-.|
T Consensus 126 i~GAGGAa~a~a~~L~~~t~~~~~i~NRT~~ka~~La~~-~~~kln~~~G~~~~~~~~~~~l~~G~~DlIINATs 199 (286)
T TIGR00507 126 IIGAGGAAKAVALELLKATDCNVIIANRTVEKAEELAER-FQRKLNKKYGEIQAFSLDEVPLHKGKVDLIINATS 199 (286)
T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 994286789999999860099789982877899999999-89885342485365211335555785679985467
No 172
>PRK05876 short chain dehydrogenase; Provisional
Probab=30.37 E-value=44 Score=15.83 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC-----CCCCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 7947889999872220895699998069555112220012-----332321158975---------36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----NTLIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~-----~~~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
-|.+|+.+++-+.+-..|.+++. +|+++...+....... -..+..|+++.. .+.+..+|+|+
T Consensus 13 GaasGIG~a~A~~la~~Ga~Vvi-~d~~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~l~~~~~~~~G~iDilv 88 (275)
T PRK05876 13 GGASGIGLATGTEFARRGARVVL-GDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHVDVVF 88 (275)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 82669999999999987998999-97988999999999982698479997888999999999999999848988512
No 173
>PRK12829 short chain dehydrogenase; Provisional
Probab=29.09 E-value=53 Score=15.42 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC---CCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 794788999987222089569999806955511222001233---2321158975---------36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~---~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
-|.+|+..+.-+.+-..|.+++. ++.++...+......++. .+..|+++.. .+.+..+|+|+
T Consensus 18 Ggs~GIG~aiA~~la~~Ga~V~i-~~r~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLV 91 (264)
T PRK12829 18 GGASGIGRAIAEAFAEAGARVHV-CDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLV 91 (264)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 73768999999999987998999-979989999999974799759999628999999999999999739998999
No 174
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=29.07 E-value=52 Score=15.44 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC----C-CCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 7947889999872220895699998069555112220012----3-32321158975---------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----N-TLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~----~-~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
-|.+|+..++-+.+-..|.+++. ++.++...+....... . ..+..||++.+ .+.+..+|+|+-
T Consensus 17 Gas~GIG~aia~~la~~Ga~V~i-~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~~~~~~~~~G~iDiLVN 93 (278)
T PRK08277 17 GGGGVLGGAMAKELARAGAKVAI-LDRNQEKAEAVVEEIKANGGEAIALKADVLDKESLEQARQQILKDFGRCDILIN 93 (278)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 86748999999999987998999-979889999999999845990999982489999999999999998499888998
No 175
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=28.32 E-value=12 Score=18.72 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=23.2
Q ss_pred EEEEECCCCCHHHHH-----HHHHH----HCCCCEEEEEEECCHHHHHHH
Q ss_conf 696410794788999-----98722----208956999980695551122
Q gi|254780516|r 3 KITDLFCGIGGIRLD-----LEQTF----NHRNVECFFSSEINPYSVKTY 43 (83)
Q Consensus 3 ~v~~LFsG~GG~~~g-----l~~a~----~~~~~~~v~a~e~d~~a~~~y 43 (83)
+++|+|||+|.+-.| ++++. .+-| ++.+-|.-..|++.+
T Consensus 36 ~YIDFlaGAGaLNYGHN~p~~K~~L~~Yl~~DG--I~hsLDM~T~AK~~F 83 (413)
T TIGR02407 36 EYIDFLAGAGALNYGHNNPKLKQALIDYLADDG--IIHSLDMATEAKREF 83 (413)
T ss_pred EEECHHHCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEECCCCHHHHHH
T ss_conf 311021015646788889899999999998589--336200241789999
No 176
>PRK06346 consensus
Probab=27.70 E-value=56 Score=15.29 Aligned_cols=62 Identities=11% Similarity=0.222 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH----HCCCC-CCCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 794788999987222089569999806955511222----00123-32321158975---------36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ----ANFPN-TLIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~----~n~~~-~~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
-|.+|+..+.-+.+-..|.+++. ++.++...+-.. .+... ..+..|+++.. .+.++.+|+|+
T Consensus 12 Ggs~GIG~a~a~~la~~Ga~V~i-~~r~~e~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~i~~~~~~fg~iDiLV 87 (251)
T PRK06346 12 GAASGMGKSIAELFAKEGAKVVV-ADLNLERAQKVVEEITSNGGTAIAVVANVTKQEDIENMVDTAVDTYGTLDILV 87 (251)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 75788999999999987998999-97989999999999996399089997788989999999999999829997999
No 177
>PRK06500 short chain dehydrogenase; Provisional
Probab=27.39 E-value=57 Score=15.26 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC--CCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 794788999987222089569999806955511222001233--2321158975---------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~--~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
-|.+|+..+.-..+-..|.+++ .++.++...+..+...... .+..|+++.. .++++.+|+|+-
T Consensus 13 Gas~GIG~aiA~~la~~Ga~V~-i~~r~~~~l~~~~~~l~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDiLvn 86 (249)
T PRK06500 13 GGTSGIGLETARQFAAEGARVA-ITGRDAATLEAARAELGEDALVIRNDAGSVAAQRALAQALAEAGGRLDAVFI 86 (249)
T ss_pred CCCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 7687899999999998799999-9969989999999985897599995179999999999999997699989998
No 178
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.39 E-value=57 Score=15.26 Aligned_cols=63 Identities=10% Similarity=0.205 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC--CCCCEEEEEE---------CCCCCC-CEEEEE
Q ss_conf 94788999987222089569999806955511222001233--2321158975---------365788-719998
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK---------TQDIPD-HDVLLA 72 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~--~~~~DI~~~~---------~~~~~~-~D~l~g 72 (83)
|.+|+..++-+.+-..|.+++.....++...+.+...++.. .+..|+++.. .+.+.. +|+|+-
T Consensus 14 as~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~~G~~idilVn 88 (254)
T PRK08642 14 GSRGLGAAIARAFAREGARVVVNYHRSEDAAEALADELGDRAIAIQADVTDRNQVDAMFATATEHFGKPITTVVN 88 (254)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 111999999999998799999961898899999999819946999806999999999999999994997769986
No 179
>PRK06138 short chain dehydrogenase; Provisional
Probab=26.97 E-value=58 Score=15.21 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC--C--CCCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 947889999872220895699998069555112220012--3--32321158975---------36578871999
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--N--TLIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~--~--~~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
|.+|+..+.-+.+-+.|.+++. ++.++...+....... . ..+..|+++.. .+++..+|+|+
T Consensus 13 as~GIG~aia~~la~~Ga~V~i-~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLV 86 (252)
T PRK06138 13 AGSGIGRATAKLFAREGARVVV-ADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLV 86 (252)
T ss_pred CCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 4679999999999987998999-9688789999999983799199999428999999999999999829998999
No 180
>PRK07680 late competence protein ComER; Validated
Probab=26.14 E-value=60 Score=15.13 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=29.9
Q ss_pred ECCCCCHHHHHHHHHHHCCC---CEEEEEEECCHHHHHHHHHCCCCCCCC
Q ss_conf 10794788999987222089---569999806955511222001233232
Q gi|254780516|r 7 LFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTYQANFPNTLIF 53 (83)
Q Consensus 7 LFsG~GG~~~gl~~a~~~~~---~~~v~a~e~d~~a~~~y~~n~~~~~~~ 53 (83)
.|=|+|-|..++-+.+.+.+ -+.+..++.++.....++..++.....
T Consensus 4 ~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~~~i~~~ 53 (273)
T PRK07680 4 GFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKYPSIHVA 53 (273)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEE
T ss_conf 99876999999999999779989456999889989999999876990886
No 181
>PRK09134 short chain dehydrogenase; Provisional
Probab=25.97 E-value=61 Score=15.12 Aligned_cols=63 Identities=8% Similarity=0.072 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC---C--CCCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 94788999987222089569999806955511222001---2--332321158975---------365788719998
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---P--NTLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~---~--~~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
|.+|+..+.-+.+-+.|++++..++.++...+...... . -..+..|+++.. .+.++.+|+|+-
T Consensus 17 as~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dl~~~~~~~~~v~~~~~~~G~iDiLVn 93 (256)
T PRK09134 17 AARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAQVRALVARASAALGPITLLVN 93 (256)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 86789999999999879989998499989999999999964991899975589999999999999998299878998
No 182
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=25.78 E-value=61 Score=15.10 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=38.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECC---CCC-CCE-EEEECC
Q ss_conf 696410794788999987222089569999806955511222001233232115897536---578-871-999868
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ---DIP-DHD-VLLAGF 74 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~---~~~-~~D-~l~gG~ 74 (83)
.+.|+=||.|..+ ++.+... .--.|+++|.++.+.+..+.|....- ..+|+-+..+ .++ +.| +++||.
T Consensus 33 vvwDIGaGsGsvs--iEaa~~~-p~~~V~AvE~~~~~~~~i~~N~~~fg-~~nv~~i~g~Ap~~l~~~pD~vFIGGs 105 (186)
T PRK08287 33 HLIDVGAGTGSVS--IEAALQF-PSLQVTAIERNPAALRLIKENRQRFG-CGNIDIIPGEAPITLTGKADAIFMGGS 105 (186)
T ss_pred EEEEECCCCCHHH--HHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHCCCCCCEEEEECC
T ss_conf 9999578877899--9999978-99889999379899999999899729-998799937781103578984999747
No 183
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=24.74 E-value=64 Score=14.99 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=33.8
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHH-----------------------HHHCCCCCCCC---CEEEEEE
Q ss_conf 107947889999872220895699998069555112-----------------------22001233232---1158975
Q gi|254780516|r 7 LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-----------------------YQANFPNTLIF---GDIAKIK 60 (83)
Q Consensus 7 LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~-----------------------y~~n~~~~~~~---~DI~~~~ 60 (83)
|-.|+||+..-.-...-..|+..+..+|.|.-...- ++.-.|...+. .++++..
T Consensus 25 lvvG~GGLG~~v~~~La~aGvg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~~~~~ 104 (197)
T cd01492 25 LLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISEKP 104 (197)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 99887889999999999837986999989918777739786032334788859999999997389972898704585768
Q ss_pred CCCCCCCEEEEECC
Q ss_conf 36578871999868
Q gi|254780516|r 61 TQDIPDHDVLLAGF 74 (83)
Q Consensus 61 ~~~~~~~D~l~gG~ 74 (83)
.+-+.+.|+++.+.
T Consensus 105 ~~~i~~~D~Vvd~~ 118 (197)
T cd01492 105 EEFFSQFDVVVATE 118 (197)
T ss_pred HHHHHCCCEEEECC
T ss_conf 99982899999999
No 184
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=24.37 E-value=37 Score=16.21 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=26.8
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC
Q ss_conf 964107947889999872220895699998069555112220012
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~ 48 (83)
+.|+|+|-|-...-++.++ +-|-++|+.-+.--.++..+.
T Consensus 31 f~DiFaGtGVV~~~fkk~~-----n~iiaNDle~ysylln~~yi~ 70 (330)
T COG3392 31 FCDIFAGTGVVGRFFKKAG-----NKIIANDLEYYSYLLNQNYIG 70 (330)
T ss_pred EEEECCCCCHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH
T ss_conf 3200268626779998722-----610132289999999988760
No 185
>KOG3191 consensus
Probab=24.23 E-value=66 Score=14.94 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=44.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH----HCCCC-CCCCCEEEEEECCCCCCCEEEEECCCCCC
Q ss_conf 96410794788999987222089569999806955511222----00123-32321158975365788719998689975
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ----ANFPN-TLIFGDIAKIKTQDIPDHDVLLAGFPCQP 78 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~----~n~~~-~~~~~DI~~~~~~~~~~~D~l~gG~PCq~ 78 (83)
++|+=||-|-.+.-|.... .+.-++.+.|+++.|+++-. .|--+ .++..|+.+-- ++ .++|+|+--||-.+
T Consensus 47 ~lEIG~GSGvvstfL~~~i--~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~-~~VDvLvfNPPYVp 122 (209)
T KOG3191 47 CLEIGCGSGVVSTFLASVI--GPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RN-ESVDVLVFNPPYVP 122 (209)
T ss_pred EEEECCCCCHHHHHHHHHC--CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHH-CC-CCCCEEEECCCCCC
T ss_conf 8993488465999999741--77716999549989998879999855775205652577663-32-77308997899676
Q ss_pred CC
Q ss_conf 43
Q gi|254780516|r 79 FS 80 (83)
Q Consensus 79 fS 80 (83)
-|
T Consensus 123 t~ 124 (209)
T KOG3191 123 TS 124 (209)
T ss_pred CC
T ss_conf 98
No 186
>PRK07060 short chain dehydrogenase; Provisional
Probab=23.97 E-value=66 Score=14.91 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEE-----CCCCCCCEEEE
Q ss_conf 7947889999872220895699998069555112220012332321158975-----36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK-----TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~-----~~~~~~~D~l~ 71 (83)
-|.+|+..+.-+.+-+.|.+++. .+.++...+.....+.......|+++.. .+++..+|+|+
T Consensus 16 G~~~GIG~aia~~la~~Ga~V~~-~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilV 82 (245)
T PRK07060 16 GASSGIGRACAVALAARGARVVA-AARNQADLDRLAGETGCEPLRLDVGDDAAIRAALAGAGAFDGLV 82 (245)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEE
T ss_conf 77768999999999987999999-97998999999986398799980799999999999659998999
No 187
>PRK07074 short chain dehydrogenase; Provisional
Probab=23.77 E-value=67 Score=14.89 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC---CCCCEEEEEE--------CCCCCCCEEEEE
Q ss_conf 794788999987222089569999806955511222001233---2321158975--------365788719998
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAKIK--------TQDIPDHDVLLA 72 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~---~~~~DI~~~~--------~~~~~~~D~l~g 72 (83)
-|.+|+..++-+.+-..|.++ ..++.++...+.....+.+. ....|+++.+ .++++.+|+|+-
T Consensus 9 Ggs~GIG~aia~~la~~Ga~V-~~~~r~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~~i~~~g~iDiLVN 82 (256)
T PRK07074 9 GAAGGIGQALARRFLAAGDRV-LALDIDRAALAAFVDALGDAAVAPVICDLTDAASVERLAAALANEGPVDVLVA 82 (256)
T ss_pred CCCCHHHHHHHHHHHHCCCEE-EEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 846899999999999869999-99979889999999982699779999727999999999999998599879998
No 188
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=23.67 E-value=31 Score=16.59 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=28.9
Q ss_pred EEEEECCCCCHHH--HHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC
Q ss_conf 6964107947889--99987222089569999806955511222001
Q gi|254780516|r 3 KITDLFCGIGGIR--LDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47 (83)
Q Consensus 3 ~v~~LFsG~GG~~--~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~ 47 (83)
++-|-|||.|.+- +||-+ ..-+.-+.++|+|+.+.+.-++|.
T Consensus 54 tlwDpCCG~gYlLTvlgLLh---r~~i~~v~aSDVd~~al~LA~~NL 97 (249)
T pfam11599 54 SLWDCCCGGAYLLSILGLLH---RNSIANLIASDIDPAPIELAADNL 97 (249)
T ss_pred CEEECCCCCHHHHHHHHHHC---HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 03305777118999999853---157877774258878999998645
No 189
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=23.66 E-value=67 Score=14.88 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=38.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC---CCCC-CCCEEEEEECCCCCCCEEEEEC
Q ss_conf 696410794788999987222089569999806955511222001---2332-3211589753657887199986
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTL-IFGDIAKIKTQDIPDHDVLLAG 73 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~---~~~~-~~~DI~~~~~~~~~~~D~l~gG 73 (83)
+.+++=|++|-++..|..-. +-..+.|+.+.|.+.-+.+- |+.. ...||-+..+. .++|+|+-+
T Consensus 46 ~alE~GCa~G~lT~~LA~RC-----drLla~Dvs~~Av~~Ar~Rla~~~hV~v~~~~vp~~wP~--~~FDLIV~S 113 (201)
T pfam05401 46 NALEVGCAAGAFTERLAPYC-----QRLTVIDVMPEAIARARLRMKKWSHISWIVSDVQQFSTN--ELFDLIVVA 113 (201)
T ss_pred HHCCCCCCCCHHHHHHHHHH-----HHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--CCEEEEEEE
T ss_conf 02043566248789999987-----467321362999999999855799828982566665998--886279751
No 190
>PRK09135 pteridine reductase; Provisional
Probab=23.09 E-value=69 Score=14.82 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH----CCCCC--CCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 7947889999872220895699998069555112220----01233--2321158975---------36578871999
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA----NFPNT--LIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~----n~~~~--~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
-|.+|+..++-+.+-..|++++.....+....+.... ..+.. .+..|+++.. .+++..+|+|+
T Consensus 13 Gas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV 90 (249)
T PRK09135 13 GGARRIGAAIARTLHAAGYRVAVHYHRSAAEADALAAELNRLRPGSAAALQADLLDPDALEQLVAAAVAAFGRLDALV 90 (249)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 887589999999999879989998189879999999999850598189998169999999999999999839998999
No 191
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=22.74 E-value=70 Score=14.78 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=28.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH
Q ss_conf 6964107947889999872220895699998069555112220
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~ 45 (83)
|+|||=||=|=-++=|..+ |++ |-|+|.++.+++....
T Consensus 76 KtLDLGCGqGrNsLyLsl~----GYD-V~awD~n~~siA~v~~ 113 (239)
T TIGR00477 76 KTLDLGCGQGRNSLYLSLA----GYD-VDAWDHNEASIASVEE 113 (239)
T ss_pred CEEECCCCCCHHHHHHHHH----CCC-CEEECCCHHHHHHHHH
T ss_conf 6532688885378999761----684-1012168668875998
No 192
>PRK06198 short chain dehydrogenase; Provisional
Probab=22.65 E-value=71 Score=14.77 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC----CCC-CCCCEEEEEE---------CCCCCCCEEEE---
Q ss_conf 794788999987222089569999806955511222001----233-2321158975---------36578871999---
Q gi|254780516|r 9 CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNT-LIFGDIAKIK---------TQDIPDHDVLL--- 71 (83)
Q Consensus 9 sG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~----~~~-~~~~DI~~~~---------~~~~~~~D~l~--- 71 (83)
-|.+|+-.+.-+.+-..|.++|..++.++...+...... ++. .+..|+++.. .++++.+|+|+
T Consensus 13 Gas~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~fG~iDiLVNnA 92 (268)
T PRK06198 13 GGTQGLGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALGAKAVFVQADLAKVEDCRAVVAAADEAFGRLDALVNAA 92 (268)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 85778999999999987993899962988899999999995499679998268999999999999999839998999899
Q ss_pred ECCCCCCC
Q ss_conf 86899754
Q gi|254780516|r 72 AGFPCQPF 79 (83)
Q Consensus 72 gG~PCq~f 79 (83)
|.++..+|
T Consensus 93 G~~~~~~~ 100 (268)
T PRK06198 93 GLTDRGTI 100 (268)
T ss_pred CCCCCCCH
T ss_conf 78999982
No 193
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=22.28 E-value=47 Score=15.65 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=21.8
Q ss_pred HHHHCCCCCCCCC-E---EEEEECCCCC-CCEEEE--ECCC
Q ss_conf 2220012332321-1---5897536578-871999--8689
Q gi|254780516|r 42 TYQANFPNTLIFG-D---IAKIKTQDIP-DHDVLL--AGFP 75 (83)
Q Consensus 42 ~y~~n~~~~~~~~-D---I~~~~~~~~~-~~D~l~--gG~P 75 (83)
-|+.|++.-..++ . ..-+..+++| ++|.|- ||||
T Consensus 265 YY~dNld~L~~~~a~l~ffspL~D~eLPPdvD~lYiGGGfP 305 (464)
T TIGR00379 265 YYQDNLDALEENAAELVFFSPLEDKELPPDVDALYIGGGFP 305 (464)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCH
T ss_conf 35778999974782798517766877971215765078852
No 194
>PRK06482 short chain dehydrogenase; Provisional
Probab=22.17 E-value=72 Score=14.72 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=41.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC--CCCEEEEEE---------CCCCCCCEE
Q ss_conf 926964107947889999872220895699998069555112220012332--321158975---------365788719
Q gi|254780516|r 1 MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--IFGDIAKIK---------TQDIPDHDV 69 (83)
Q Consensus 1 ml~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~--~~~DI~~~~---------~~~~~~~D~ 69 (83)
|-|+.=.--+-+|+..++-+.....|.+++. ...++...+-+...+++.. ..-|+++.. .+.++.+|+
T Consensus 1 M~Kv~lITGaSsGiG~ala~~l~~~G~~Vi~-t~R~~~~l~~l~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDv 79 (276)
T PRK06482 1 MTKTWFITGASSGFGRGLTERLLARGDRVAA-TVRRPDALDDLKARYGERLWVLQLDVTDTAAVRAVVDRAFAELGRIDV 79 (276)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 9978999158659999999999988998999-978989999999866995799995379999999999999998099878
Q ss_pred EE--ECC
Q ss_conf 99--868
Q gi|254780516|r 70 LL--AGF 74 (83)
Q Consensus 70 l~--gG~ 74 (83)
|+ +|.
T Consensus 80 LVNNAG~ 86 (276)
T PRK06482 80 VVSNAGY 86 (276)
T ss_pred EEECCCC
T ss_conf 8746877
No 195
>KOG1499 consensus
Probab=21.96 E-value=73 Score=14.70 Aligned_cols=65 Identities=18% Similarity=0.368 Sum_probs=39.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCH---HHHHHHHHCCC-C--CCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 69641079478899998722208956999980695---55112220012-3--32321158975365788719998
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP---YSVKTYQANFP-N--TLIFGDIAKIKTQDIPDHDVLLA 72 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~---~a~~~y~~n~~-~--~~~~~DI~~~~~~~~~~~D~l~g 72 (83)
.|+|.=||.|=+++=.-+| |.+.|.|+|... .|.+..+.|.- + +.+.+.|+++..- ++++|+++.
T Consensus 63 ~VlDVGcGtGILS~F~akA----GA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP-~eKVDiIvS 133 (346)
T KOG1499 63 TVLDVGCGTGILSMFAAKA----GARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELP-VEKVDIIVS 133 (346)
T ss_pred EEEECCCCCCHHHHHHHHH----CCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECC-CCCEEEEEE
T ss_conf 8997578812889998873----7533999962689999999998568660599950305787647-554029963
No 196
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=21.95 E-value=73 Score=14.70 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=37.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-------CCCCCEE
Q ss_conf 69641079478899998722208956999980695551122200123-------3232115
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-------~~~~~DI 56 (83)
||+|-=.|=|+++.+|-++.... -.++..|+.+...+.-+.||.. +..++||
T Consensus 105 ~VlEaGtGSGsLT~~Laravgp~--G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv 163 (309)
T pfam08704 105 VVCESGTGSGSLSHAIARTVAPT--GHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDV 163 (309)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 99983678429999999974888--659998447899999999998749875058898520
No 197
>PRK08226 short chain dehydrogenase; Provisional
Probab=21.67 E-value=74 Score=14.67 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC----CCCCCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 94788999987222089569999806955511222001----2332321158975---------36578871999
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~----~~~~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
|.+|+..+.-+.+-..|.+++. ++.++.+.++-+.-. .-..+..|+++.. .+.+..+|+|+
T Consensus 14 as~GIG~aiA~~la~~Ga~Vvi-~d~~~~~~~~~~~~~~~g~~~~~~~~Dvsd~~~v~~~v~~~~~~~G~iDiLV 87 (263)
T PRK08226 14 ALQGIGEGIARVFARHGANLIL-LDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILV 87 (263)
T ss_pred CCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 3779999999999987998999-9698799999999983699179999417999999999999999839986999
No 198
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=21.49 E-value=75 Score=14.65 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=27.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH
Q ss_conf 926964107947889999872220895699998069555112220
Q gi|254780516|r 1 MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45 (83)
Q Consensus 1 ml~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~ 45 (83)
|+|+. |=|.|-|..++-+-+.+.+++++ ..|.++.+.+.+..
T Consensus 1 M~~Ig--~IGlG~MG~~ma~~L~~~g~~v~-v~d~~~~~~~~~~~ 42 (163)
T pfam03446 1 MAKIG--FIGLGVMGSPMALNLLKAGYTVT-VYNRTPEKVEELVA 42 (163)
T ss_pred CCEEE--EEEEHHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHH
T ss_conf 98899--98367989999999997799699-99797887799998
No 199
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.28 E-value=76 Score=14.62 Aligned_cols=63 Identities=10% Similarity=0.105 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC--CCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 9478899998722208956999980695551122200123--32321158975---------365788719998
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~--~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
|.+|+..++-.++-..|.+++.....+....+........ ..+..|+++.+ .+.++.+|+|+-
T Consensus 16 as~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilVN 89 (251)
T PRK12481 16 CNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDILIN 89 (251)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 67689999999999869999997898719999999975994799991279999999999999998199989998
No 200
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=76 Score=14.62 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=30.4
Q ss_pred CEEEEECCCCCHHHH-HHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC-CCCEEEEEE
Q ss_conf 269641079478899-99872220895699998069555112220012332-321158975
Q gi|254780516|r 2 LKITDLFCGIGGIRL-DLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60 (83)
Q Consensus 2 l~v~~LFsG~GG~~~-gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~-~~~DI~~~~ 60 (83)
.+|+||.|-.||++. +.+.++... + |.++|+.|-.- ++++. +.+|+++-+
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~--~-vvavDi~p~~~------~~~V~~iq~d~~~~~ 98 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGG--K-IVAVDILPMKP------IPGVIFLQGDITDED 98 (205)
T ss_pred CEEEECCCCCCCHHHHHHHHHCCCC--C-EEEEECCCCCC------CCCCEEEEEECCCCC
T ss_conf 8799838799849999999738888--4-89997754556------789468841324843
No 201
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.18 E-value=76 Score=14.61 Aligned_cols=63 Identities=10% Similarity=0.105 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHH-HHH---HHHCCCC-CCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 947889999872220895699998069555-112---2200123-32321158975---------365788719998
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYS-VKT---YQANFPN-TLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a-~~~---y~~n~~~-~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
|..|+..+.-..+-..|++++...+.++.. .++ .+..-++ ..+..|+++.+ .+.++.+|+|+-
T Consensus 11 gs~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDiLVn 87 (249)
T PRK06077 11 SGRGIGRAIAVRLAKEGAKVVVNAKKRAEEMNETLRMVKEYGGEGIGVLADVSTREGCRTLAKAALDNFGVVDILVN 87 (249)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 36789999999999879989998488768999999999975995899984799999999999999998199888998
No 202
>PRK07326 short chain dehydrogenase; Provisional
Probab=21.01 E-value=77 Score=14.59 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC---CCCCCEEEEEE---------CCCCCCCEEEEE
Q ss_conf 9478899998722208956999980695551122200123---32321158975---------365788719998
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKIK---------TQDIPDHDVLLA 72 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~---~~~~~DI~~~~---------~~~~~~~D~l~g 72 (83)
|..|+..++-+.+-..|++++. ++.++...+........ .....|+++.+ .++++.+|+|+-
T Consensus 13 as~GIG~aiA~~la~~Ga~V~i-~~r~~~~l~~~~~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~G~iDiLVN 86 (235)
T PRK07326 13 GSKGIGFAVAEALAAAGYRVAI-CARDESELEAAAQELGKRNVLGLACDVRDEADVRQAVDAHVEAFGGLDILVN 86 (235)
T ss_pred CCCHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 2679999999999987999999-9898899999999842398699996389999999999999998299669998
No 203
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.93 E-value=77 Score=14.58 Aligned_cols=69 Identities=6% Similarity=0.109 Sum_probs=38.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC---C--CCCCCCEEEEEE---------CCCCCCCEE
Q ss_conf 96410794788999987222089569999806955511222001---2--332321158975---------365788719
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---P--NTLIFGDIAKIK---------TQDIPDHDV 69 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~---~--~~~~~~DI~~~~---------~~~~~~~D~ 69 (83)
++=..-|.+|+..++-+.+-+.|++++.....++...+...... . -..+..|+++.+ .++++.+|+
T Consensus 6 valVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~G~iDi 85 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAKEGYDIAINYARSRKAAEETANEIEQLGRKALVVKANVGDVEKIKEMFSQIDEHFGRLDV 85 (250)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 89995876699999999999889989997599989999999999954995899984799999999999999998099889
Q ss_pred EEE
Q ss_conf 998
Q gi|254780516|r 70 LLA 72 (83)
Q Consensus 70 l~g 72 (83)
|+-
T Consensus 86 LVn 88 (250)
T PRK08063 86 FVN 88 (250)
T ss_pred EEE
T ss_conf 998
No 204
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=20.92 E-value=77 Score=14.58 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCC------CCCCCCCEEEEEE-CCC-CCCCEEEEECCCCCCC
Q ss_conf 94788999987222089569999806955511222001------2332321158975-365-7887199986899754
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDIAKIK-TQD-IPDHDVLLAGFPCQPF 79 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~------~~~~~~~DI~~~~-~~~-~~~~D~l~gG~PCq~f 79 (83)
|.|.+..+|-...-+.+.++.. ...++.-.+.++.++ |+...-.+|+-.. .++ +.+.|+++-.-|.|.+
T Consensus 7 GaG~wGtAla~~la~n~~~V~l-~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiiavps~~~ 83 (159)
T pfam01210 7 GAGSWGTALAKVLARNGHEVRL-WGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAVPSQAL 83 (159)
T ss_pred CCCHHHHHHHHHHHHCCCEEEE-EEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEECCHHHH
T ss_conf 9699999999999987998999-9904366677886697821047864555305428899998379899991748899
No 205
>PRK08589 short chain dehydrogenase; Validated
Probab=20.85 E-value=78 Score=14.58 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH---CCCC-CCCCCEEEEEE---------CCCCCCCEEEE
Q ss_conf 947889999872220895699998069555112220---0123-32321158975---------36578871999
Q gi|254780516|r 10 GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA---NFPN-TLIFGDIAKIK---------TQDIPDHDVLL 71 (83)
Q Consensus 10 G~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~---n~~~-~~~~~DI~~~~---------~~~~~~~D~l~ 71 (83)
|.+|+..+.-+.+-+.|.+++ ..++++.+.++.+. +-.+ .....|+++.. .+++..+|+|+
T Consensus 14 as~GIG~aiA~~la~~Ga~Vv-~~d~~~~~~~~~~~i~~~g~~~~~~~~Dvsd~~~v~~~v~~~~~~~G~iDiLV 87 (272)
T PRK08589 14 ASTGIGQASAIALAQEGAYVL-AVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASDIKEQFGHIDVLF 87 (272)
T ss_pred CCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 256999999999998699999-98382789999999995599489999607999999999999999829987899
Done!