HHsearch results for GI: 254780516 and protein with PDBid: 1g8a_A
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=93.99 E-value=0.075 Score=28.63 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=48.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC----CCCCEEEEEEC--CCCCCCEEEEECCC
Q ss_conf 2696410794788999987222089569999806955511222001233----23211589753--65788719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIAKIKT--QDIPDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~----~~~~DI~~~~~--~~~~~~D~l~gG~P 75 (83)
.||+||.||.|....-+....... -.|+++|+++.+.+..+.+.... ++..|..+... .....+|++....+
T Consensus 75 ~~VLDlG~G~G~~~~~la~~vg~~--G~V~avD~s~~~l~~l~~~~~~~~ni~~v~~da~~~~~~~~~~~~vd~v~~~~~ 152 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWE--GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CEEEEEECCCCHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCEEEEEEEEEC
T ss_conf 999997178788999999984899--669999899999999998787669834999876794465445671999997600
Q ss_pred CCC
Q ss_conf 975
Q gi|254780516|r 76 CQP 78 (83)
Q Consensus 76 Cq~ 78 (83)
+.+
T Consensus 153 ~~~ 155 (227)
T 1g8a_A 153 QPT 155 (227)
T ss_dssp STT
T ss_pred CCC
T ss_conf 054