HHsearch results for GI: 254780516 and protein with PDBid: 1g8a_A

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=93.99  E-value=0.075  Score=28.63  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC----CCCCEEEEEEC--CCCCCCEEEEECCC
Q ss_conf             2696410794788999987222089569999806955511222001233----23211589753--65788719998689
Q gi|254780516|r    2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIAKIKT--QDIPDHDVLLAGFP   75 (83)
Q Consensus         2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~----~~~~DI~~~~~--~~~~~~D~l~gG~P   75 (83)
                      .||+||.||.|....-+.......  -.|+++|+++.+.+..+.+....    ++..|..+...  .....+|++....+
T Consensus        75 ~~VLDlG~G~G~~~~~la~~vg~~--G~V~avD~s~~~l~~l~~~~~~~~ni~~v~~da~~~~~~~~~~~~vd~v~~~~~  152 (227)
T 1g8a_A           75 KSVLYLGIASGTTASHVSDIVGWE--GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCEEEEEEEEEC
T ss_conf             999997178788999999984899--669999899999999998787669834999876794465445671999997600


Q ss_pred             CCC
Q ss_conf             975
Q gi|254780516|r   76 CQP   78 (83)
Q Consensus        76 Cq~   78 (83)
                      +.+
T Consensus       153 ~~~  155 (227)
T 1g8a_A          153 QPT  155 (227)
T ss_dssp             STT
T ss_pred             CCC
T ss_conf             054