HHsearch results for GI: 254780516 and protein with PDBid: 2pjd_A
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=95.85 E-value=0.0086 Score=33.34 Aligned_cols=72 Identities=14% Similarity=0.327 Sum_probs=48.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEC-CCC-CCCEEEEECCCCC
Q ss_conf 69641079478899998722208956999980695551122200123323211589753-657-8871999868997
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QDI-PDHDVLLAGFPCQ 77 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~-~~~-~~~D~l~gG~PCq 77 (83)
|++|+.||.|.+...+.+... +. .|.++|+++.|.+.-+.|........++..-+. +.+ ..+|+++.-||.-
T Consensus 199 ~VLDlGcG~G~l~~~la~~~p--~~-~v~~vD~s~~al~~ar~n~~~n~l~~~~~~~d~~~~~~~~fD~Iv~NpPfh 272 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHSP--KI-RLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFH 272 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHCT--TC-BCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCC
T ss_pred EEEEECCCCCHHHHHHHHHCC--CC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCEEEECCCCC
T ss_conf 299932527799999999789--97-899998999999999999998499379996440122665545899887501