HHsearch results for GI: 254780516 and protein with PDBid: 2pjd_A

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=95.85  E-value=0.0086  Score=33.34  Aligned_cols=72  Identities=14%  Similarity=0.327  Sum_probs=48.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEC-CCC-CCCEEEEECCCCC
Q ss_conf             69641079478899998722208956999980695551122200123323211589753-657-8871999868997
Q gi|254780516|r    3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QDI-PDHDVLLAGFPCQ   77 (83)
Q Consensus         3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~-~~~-~~~D~l~gG~PCq   77 (83)
                      |++|+.||.|.+...+.+...  +. .|.++|+++.|.+.-+.|........++..-+. +.+ ..+|+++.-||.-
T Consensus       199 ~VLDlGcG~G~l~~~la~~~p--~~-~v~~vD~s~~al~~ar~n~~~n~l~~~~~~~d~~~~~~~~fD~Iv~NpPfh  272 (343)
T 2pjd_A          199 KVLDVGCGAGVLSVAFARHSP--KI-RLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFH  272 (343)
T ss_dssp             BCCBTTCTTSHHHHHHHHHCT--TC-BCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCC
T ss_pred             EEEEECCCCCHHHHHHHHHCC--CC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCEEEECCCCC
T ss_conf             299932527799999999789--97-899998999999999999998499379996440122665545899887501