HHsearch results for GI: 254780516 and protein with PDBid: 3m6w_A
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.61 E-value=0.0023 Score=36.25 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=53.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCC-----CCCEEEEECCCC
Q ss_conf 269641079478899998722208956999980695551122200123323211589753657-----887199986899
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI-----PDHDVLLAGFPC 76 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~-----~~~D~l~gG~PC 76 (83)
.+|+|+||+.||=+..+.....+. -.+.++|+++...++++.|....-...-|+..+...+ ..+|.|+.-.||
T Consensus 103 ~~VLDlCAAPGGKt~~la~~l~~~--g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d~~~l~~~~~~~fD~ILvDaPC 180 (464)
T 3m6w_A 103 ERVLDLAAAPGGKTTHLAARMGGK--GLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC 180 (464)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCEEEECCCC
T ss_conf 979883658765599999885358--357622431788888988888618861687232243320466644379844876
Q ss_pred CCC
Q ss_conf 754
Q gi|254780516|r 77 QPF 79 (83)
Q Consensus 77 q~f 79 (83)
-+-
T Consensus 181 SG~ 183 (464)
T 3m6w_A 181 SGE 183 (464)
T ss_dssp CCG
T ss_pred CCC
T ss_conf 667