HHsearch results for GI: 254780516 and protein with PDBid: 3m6w_A

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.61  E-value=0.0023  Score=36.25  Aligned_cols=76  Identities=14%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCC-----CCCEEEEECCCC
Q ss_conf             269641079478899998722208956999980695551122200123323211589753657-----887199986899
Q gi|254780516|r    2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI-----PDHDVLLAGFPC   76 (83)
Q Consensus         2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~-----~~~D~l~gG~PC   76 (83)
                      .+|+|+||+.||=+..+.....+.  -.+.++|+++...++++.|....-...-|+..+...+     ..+|.|+.-.||
T Consensus       103 ~~VLDlCAAPGGKt~~la~~l~~~--g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d~~~l~~~~~~~fD~ILvDaPC  180 (464)
T 3m6w_A          103 ERVLDLAAAPGGKTTHLAARMGGK--GLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC  180 (464)
T ss_dssp             CEEEESSCTTCHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCC--CEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCEEEECCCC
T ss_conf             979883658765599999885358--357622431788888988888618861687232243320466644379844876


Q ss_pred             CCC
Q ss_conf             754
Q gi|254780516|r   77 QPF   79 (83)
Q Consensus        77 q~f   79 (83)
                      -+-
T Consensus       181 SG~  183 (464)
T 3m6w_A          181 SGE  183 (464)
T ss_dssp             CCG
T ss_pred             CCC
T ss_conf             667