HHsearch results for GI: 254780516 and protein with PDBid: 3me5_A
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.96 E-value=5.4e-31 Score=174.94 Aligned_cols=79 Identities=53% Similarity=0.879 Sum_probs=69.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC---C-CCCCEEEEEECC--------------
Q ss_conf 9269641079478899998722208956999980695551122200123---3-232115897536--------------
Q gi|254780516|r 1 MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---T-LIFGDIAKIKTQ-------------- 62 (83)
Q Consensus 1 ml~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~---~-~~~~DI~~~~~~-------------- 62 (83)
++||+|||||+||+++||+++ |+++++++|||++|++||++||+. . ...+||++++..
T Consensus 88 ~f~vidLFaG~GGl~~G~e~a----G~~~v~a~E~d~~A~~ty~~N~~~~p~~~~~~~Di~~i~~~~~~~~~~~~~~~~~ 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI----GGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT----TEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHC----CCEEEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHCCHHHCCCCCCCHHHHHH
T ss_conf 998899792708799999987----9959999968999999999865899864363564765661010122210123332
Q ss_pred --CCCCCEEEEECCCCCCCCCCC
Q ss_conf --578871999868997543689
Q gi|254780516|r 63 --DIPDHDVLLAGFPCQPFSQAG 83 (83)
Q Consensus 63 --~~~~~D~l~gG~PCq~fS~aG 83 (83)
++|++|+|+||||||+||+||
T Consensus 164 ~~~~p~vDvl~gGpPCQ~FS~AG 186 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPFSLAG 186 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC----
T ss_pred HCCCCCCCEEEECCCCCCCCHHC
T ss_conf 11388778799779983004231