HHSEARCH alignment of GI: 254780516 and SCOP domain: d1qama_

Alignment
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}
Probab=94.42  E-value=0.032  Score=29.31  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=49.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC----CCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf             69641079478899998722208956999980695551122200123----323211589753657887199986899
Q gi|254780516|r    3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAKIKTQDIPDHDVLLAGFPC   76 (83)
Q Consensus         3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~----~~~~~DI~~~~~~~~~~~D~l~gG~PC   76 (83)
                      +|+|.=+|.|.++..|-..    + ..+.++|+|+...+.++.++.+    ..+.+|+.+++..+... ..++|-.|=
T Consensus        24 ~VlEIGpG~G~LT~~Ll~~----~-~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~-~~vv~NLPY   95 (235)
T d1qama_          24 NIFEIGSGKGHFTLELVQR----C-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS-YKIFGNIPY   95 (235)
T ss_dssp             EEEEECCTTSHHHHHHHHH----S-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC-CEEEEECCG
T ss_pred             EEEEECCCCHHHHHHHHHC----C-CCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC-CEEEEEEHH
T ss_conf             6999789700999999817----6-8428986254168899987422231245545655136531256-103640043


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]