HHSEARCH alignment of GI: 254780516 and SCOP domain: d1uwva2

Alignment

Probab=97.45  E-value=4.8e-05  Score=43.44  Aligned_cols=71  Identities=23%  Similarity=0.288  Sum_probs=49.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC------CCCCEEEEEECCC---CCCCEEEEEC
Q ss_conf             696410794788999987222089569999806955511222001233------2321158975365---7887199986
Q gi|254780516|r    3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIAKIKTQD---IPDHDVLLAG   73 (83)
Q Consensus         3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~------~~~~DI~~~~~~~---~~~~D~l~gG   73 (83)
                      +++|||||+|.+++.|.+     .++.|.++|.++.|.+.-+.|....      .+.+|..+.-...   ....|+++--
T Consensus       215 ~vlDLycG~G~fsl~La~-----~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         215 RVLDLFCGMGNFTLPLAT-----QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             EEEEESCTTTTTHHHHHT-----TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             EEEEECCCCCCCCHHCCC-----CCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEC
T ss_conf             499953666655210035-----652798224749999999984875532462134220454323445540467559967


Q ss_pred             CCCCC
Q ss_conf             89975
Q gi|254780516|r   74 FPCQP   78 (83)
Q Consensus        74 ~PCq~   78 (83)
                      ||=.+
T Consensus       290 PPR~G  294 (358)
T d1uwva2         290 PARAG  294 (358)
T ss_dssp             CCTTC
T ss_pred             CCCCC
T ss_conf             99734

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]