HHSEARCH alignment of GI: 254780516 and SCOP domain: d2frna1

Alignment

Probab=98.05  E-value=5.3e-06  Score=48.27  Aligned_cols=70  Identities=21%  Similarity=0.306  Sum_probs=50.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCC-------CCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf             696410794788999987222089569999806955511222001233-------2321158975365788719998689
Q gi|254780516|r    3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDIAKIKTQDIPDHDVLLAGFP   75 (83)
Q Consensus         3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~-------~~~~DI~~~~~~~~~~~D~l~gG~P   75 (83)
                      +|+|+|||.|.+++-+-..    +...|.++|+++.|.+..+.|....       .+.+|.+++..+  ..+|.++.++|
T Consensus       110 ~VlD~~aG~G~~~l~~a~~----~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~--~~~D~Ii~~~p  183 (260)
T d2frna1         110 LVVDMFAGIGHLSLPIAVY----GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE--NIADRILMGYV  183 (260)
T ss_dssp             EEEETTCTTTTTHHHHHHH----TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC--SCEEEEEECCC
T ss_pred             EEEECCCEECHHHHHHHHH----CCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCC--CCCCEEEECCC
T ss_conf             8997756595999999972----89689996498999999999999809875599998236884457--87899998898


Q ss_pred             CCC
Q ss_conf             975
Q gi|254780516|r   76 CQP   78 (83)
Q Consensus        76 Cq~   78 (83)
                      ...
T Consensus       184 ~~~  186 (260)
T d2frna1         184 VRT  186 (260)
T ss_dssp             SSG
T ss_pred             CCH
T ss_conf             726

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]